ID:

dan_2514

 Coordinate:

scaffold_13337:9034152-9034302 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.0 -26.9 -26.8

Flybase annnotation

CDS [Dana\GF24267-cds]; exon [dana_GLEANR_9003:2]; intron [Dana\GF24267-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCCACCTATATGGTAAGTAATCACCCACCACCCACCACCCATCACCCCCGACTTAAAACAGCTGTTGCTCAGCAAAGTCAACAGCTGGAATGGCAGTAAGCCTCAAGCCTCAAGTATTTTTAATTATGCTTTATTTGTTTTCACTCAATTGGCTCAATGGCTCACTGGCTCACTGACTCGCAGTTTCATCGGCCTCCGTATCGCACATACATA
**************************************************..........................((((................(((((((((((......)).)))))))))..)))).....((((...((((..((((((........))))))...................))))....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V055
head
 V105
male body		 V039
embryo
..................TACCGTCAGAGAGTAAACT...................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1
......................GTCAGAGAGTAAACTCGCCACCTATA........................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0
.................ATACCGTCAGAGAGTAAACT...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.CTCGCCAACGAATGGTATACCGTCAGAG.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0
......CAACGAATGGTATACCGTCAGAGA............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0
...............................................................................TCACCCCCGACTTTGACCAGCT...................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0
....................CCGTCAGAGAGTAAACTCGCCACC............................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................TGGAATGGGAGTAAGTCTCTAG.......................................................................................................... 22 3 1 1.00 1 0 0 1 0 0
....................................................................................................................................................................................................................GACTCGCAGTTTCATCGGCCTCC................ 23 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................CAGCTGGAATGGCAGTAAGCCTCAAGC......................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...CGCCAACGAATGGTATACC..................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
............ATGGTATACCGTCAGAGAGC........................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................AATTATGCTTTATTAGTTT......................................................................... 19 1 3 0.33 1 0 0 0 0 1
............................GAGAAAACACGACACCTATA........................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0
.......................................................TAATAACCCACGAGCCACCAC............................................................................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0
................TATACCGTCAGAGAAAAGA........................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0
................................................TAATAAATAATCACCCACCA....................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
....................................................................................................................................AATAACCCTCTAGCCTCA..................................................................................................... 18 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

AGAGCGGTTGCTTACCATATGGCAGTCTCTCATTTGAGCGGTGGATATACCATTCATTAGTGGGTGGTGGGTGGTGGGTAGTGGGGGCTGAATTTTGTCGACAACGAGTCGTTTCAGTTGTCGACCTTACCGTCATTCGGAGTTCGGAGTTCATAAAAATTAATACGAAATAAACAAAAGTGAGTTAACCGAGTTACCGAGTGACCGAGTGACTGAGCGTCAAAGTAGCCGGAGGCATAGCGTGTATGTAT
**************************************************..........................((((................(((((((((((......)).)))))))))..)))).....((((...((((..((((((........))))))...................))))....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V055
head
 M044
female body
 V105
male body		 M058
embryo
 V039
embryo
............................................................TGGGTGGTGGGTGGTGGGT............................................................................................................................................................................ 19 0 20 8.95 179 176 0 0 3 0 0
...........................................................GTGGGTGGTGGGTGGTGG.............................................................................................................................................................................. 18 0 20 3.50 70 70 0 0 0 0 0
..........................................................AGTGGGTGGTGGGTGGTGGGT............................................................................................................................................................................ 21 0 2 1.50 3 3 0 0 0 0 0
...........................................................GTGGGTGGTGGGTGGTGGGT............................................................................................................................................................................ 20 0 20 1.45 29 29 0 0 0 0 0
.......................................................AAAAGTGGGTGGTGGGTGGTG............................................................................................................................................................................... 21 2 7 1.14 8 8 0 0 0 0 0
.......................................................ATAAGTGGGTGGTGGGTGGTGG.............................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
....................................................................GGGTGGTGGGCAGTGGGGG.................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0
....................................................................GGGTGGTGGATTGTTGGGGCTGA................................................................................................................................................................ 23 3 1 1.00 1 0 1 0 0 0 0
..........................................................AATGGGTGGTGGGTGGTGGGTAG.......................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................AAAAGTGGGTGGTGGGTGGTGG.............................................................................................................................................................................. 22 2 6 0.67 4 4 0 0 0 0 0
..........................................................AGTGGGTGGTGGGTGGTGG.............................................................................................................................................................................. 19 0 2 0.50 1 1 0 0 0 0 0
.........................................................AAGTGGGTGGTGGGTGGTGGGT............................................................................................................................................................................ 22 1 7 0.43 3 3 0 0 0 0 0
.................................................................................................................................................................................CAGTGAGTTAACCGAGTTG....................................................... 19 2 3 0.33 1 0 0 0 0 1 0
................................................................................................................................................................................................................GTGCCTGTGCGTCCAAGTAGC...................... 21 3 3 0.33 1 0 1 0 0 0 0
.......................................................................TGGTGTCGAGTGGGGGCTGA................................................................................................................................................................ 20 3 3 0.33 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................GGAGCCGTAGTGTGTATGTAT 21 3 3 0.33 1 0 0 1 0 0 0
.......................................................AAAAGTGGGTGGTGGGTGGTGGGT............................................................................................................................................................................ 24 2 3 0.33 1 1 0 0 0 0 0
...........................................................GTGGGTGGTGGGTGGTGGGTA........................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
.............................................................GGGTGGTGGGTGGTGGGTA........................................................................................................................................................................... 19 0 4 0.25 1 1 0 0 0 0 0
.......................................................................TGGTGTCTAGTAGGGGCTGA................................................................................................................................................................ 20 3 4 0.25 1 0 0 0 1 0 0
............................................................TGGGTGGTGGGTGGTGGGTA........................................................................................................................................................................... 20 0 4 0.25 1 1 0 0 0 0 0
...........................................................................CGAAAGTGGGGGCTGAATTT............................................................................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0
.......................................................AAGAGTGGGTGGTGGGTGGTG............................................................................................................................................................................... 21 2 5 0.20 1 1 0 0 0 0 0
.......................................................AAAAGTGGGTGGTGGGTGGTGGGTC........................................................................................................................................................................... 25 3 5 0.20 1 1 0 0 0 0 0
..............................................ATACTGTGCATTAGTGGGTG......................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................AGGCATGGCCTGTAAGTAT 19 3 7 0.14 1 0 1 0 0 0 0
..........................................................ATTGGGTGGTGGGTGGTGG.............................................................................................................................................................................. 19 1 7 0.14 1 1 0 0 0 0 0
...........................TCTCAATTTAGCGGTAGATA............................................................................................................................................................................................................ 20 3 9 0.11 1 0 1 0 0 0 0
..........................................................AATGGGTGGTGGGTGGTGGGT............................................................................................................................................................................ 21 1 9 0.11 1 1 0 0 0 0 0
...........................................................GTGGGTGGTGGGTGGTGGG............................................................................................................................................................................. 19 0 20 0.10 2 2 0 0 0 0 0
.................................................................................................................................................................................................................TGACTAGTCGTCAAAGTAGC...................... 20 3 10 0.10 1 0 1 0 0 0 0
............................................................TGGGTGGTGGGTGGTGGCT............................................................................................................................................................................ 19 1 20 0.10 2 2 0 0 0 0 0
.......................................................................................................................................................................................................................AGCGTCAAAGTATCTGCAG................. 19 3 11 0.09 1 0 0 1 0 0 0
.................................................................................................................................................................AATACGAAGTAGACAAGAGT...................................................................... 20 3 13 0.08 1 1 0 0 0 0 0
..........................................................AATGGGTGGTGGGTGGTGGGA............................................................................................................................................................................ 21 2 17 0.06 1 1 0 0 0 0 0
............................................................TGGGTAGTAGGTGGTGGGTAG.......................................................................................................................................................................... 21 2 18 0.06 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................GCCGGGGGGATAGTGTGTA..... 19 3 19 0.05 1 0 1 0 0 0 0
..........................................................................................................CGTCGTCTCAGTTGTCGA............................................................................................................................... 18 2 19 0.05 1 0 0 1 0 0 0
............................................................TGGGTGGTGCGTGGTGGGT............................................................................................................................................................................ 19 1 20 0.05 1 1 0 0 0 0 0
................................................................TGGTGCGTGGTAGGTAGT......................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1
...........................................................CTGGGTGGTGGGTGGTGGG............................................................................................................................................................................. 19 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................TGTCGCCAACGAGTCTTTA......................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0
.......................................................................TGGTGTCGAGTGGGGGCTG................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0
.............................................................GGGTGGTGGGTGGTGGGT............................................................................................................................................................................ 18 0 20 0.05 1 0 0 1 0 0 0
............................................................TGGGTGGTGGGTTGTGGGT............................................................................................................................................................................ 19 1 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:9034102-9034352 - dan_2514 TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCCACCTATATGGTAAGTAA---TC-A-----------------------------------------------------------------------------------------------------------------------------------CC--CACCACCCACCACC----CATCACCCCCGA--CTTAAAACAGCTGTTGCTC------A----GCA--AAGTCAACAGCTGGAATGGCAGTAAGCCTCAAGCCTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTGGCTCAATGGCTCACTGGCTCACTGAC-TCG--------CAGTTTCATCGGCCT-CCGT-----ATCGCACATACATA
droBip1 scf7180000395622:22739-22965 + TCTCGCCATCGAATGGTATACCTTCAGAGAGTAAACTCGCCACCTATATGGTAAGTTC---CAGTACA--------------------------------------------------------------------------------------------------------------------------------CC--CA-CACCCACTA------------CGCCCACAACAAAAACAGCTGTTGGGA-----------GGA--AAGTCAACAGCTGGAATGGCTGA----C---TGCTTCAAGTATTTTTAATTATGTTTTTTTATTATTATTTGTTTT--------TCG------------------------G-TTGAAACATTTCAATTTCATCGGCCTTCCATACACATCGGCACATA----
droKik1 scf7180000302577:1249760-1249896 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAGCTGCTTACCATGCTTATACCCCCAAAAGTTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTG------------------------CTTCGAAACATTTCAATTTCAACGC--T-C-------AGCCGCACATA----
droFic1 scf7180000454105:1394144-1394448 + TCTCGCCAACGAATGGTATACCGTCAGAAAGTAAACTCGCTACTTATATGGTAAGTTA-GTGCCTCCC-CT--CTCCTCCC--TCCACAA--ACCTTTTATCACAGTT--CCCCC------GA--A--------AGCCAAG------CACAAAAGCAAGGCGATAACAGTTTT-GGGGAGGACTATTTTGACAC--------------CCCAAC----AAAAGCCACCCA--CTGAAAACAGCTGTTGGCC-----------CCC--AATTTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAATTTCAACGC--T-C-------AGTCGCACATA----
droEle1 scf7180000491249:2222740-2223037 - TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCTACTTATATGGTAAGTTG---ACTTTTC-CTA-----TCCC--TTAACAA-----TTTTATCAAAAT-------------------------------A-GAA-----ACGAAAACAAGTTGATAACAGTTTATGGGGATGAATATCTTAACAACACCAACACCACC-CCCAAC----GAAATGCGCCCA--CATAAAACAGCTGTTGACC-----------GCC--AAGTCAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-CCGAAACATTTCAATTTCAACGC--T-C-------AGTTGCACATA----
droRho1 scf7180000777063:181378-181675 - TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCTACTTATATGGTAAGTTT---GCTTATT-TTA-----TCCC------CAA--ACTTTTTATCAAAGTT--CCCCTG--A--AA--A--------A--TAAAAA-----ACGAAAACAAGGCGATAACACTTTATGTGGAAGAATATCTTAAC--------------CCCCCAAT----AGAAACCACCCA--CTGAAAACAGCTGTTGACC-----------GCC--AAGTTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTC---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAATTTCAACGC--T-T-------AGTAGCACATA----
droBia1 scf7180000302428:2424511-2424810 + TCTCGCCAACGAATGGTATACCCTCAGAGAGTAAACTCGCTACTTATATGGTAAGTTT---GGCTCTCCCC-------GCCACC---CAAAACTTTCTTATCACGGTC--CCCCGC---------------------------CC-CCACGAAAACAAAGCGATAACAGTTTAAGGGGTAGATTATTATTATAGCC---------TCCCGGGCG----AAAAACCACCCA--CTGAAACCAGCTGTTGGCG-----------GCC--AAGTTAACAGCTGGCCACGTT----------TG-CTCGAGTACTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAATTTCAACGC--T-C-------GGTCGCACATA----
droTak1 scf7180000415378:343703-343991 - TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCTACTTATATGGTAAGTGTA--ACTCCCC-CT-------CCC----------TATCTTTTATCAGAGTCTTCCCC----A-----------------------------CCAAAAACAAGACGATAACAGTTTAAGGGGAAGATTATTAAAG--CC-------------CCCAAA-TTCAAGAACCACCCA--CTGAAAGCAGCTGTTGGCC-----------GCC-AAAGTTAACAGCTGGCCACGTT----------TGCCTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAATTTCAACGT--T-C-------AGTCGCACATA----
droEug1 scf7180000409466:804640-804946 + TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCAACTTATATGGTAAGTTA---ACTTCTCCGT-TCCACTCCC------AAA--AACTCTTATCAAAGTC--TCCCACCCACCAAACAACA--AAAA--TAAGA------ACGAAAACAAGGCGATAACAGTTTAAGGGGAAGATTATCATAACACC-------------CCCAAC----AAAAAGCACCCA--CTGAAAGCAGCTGTTGGCC-----------GCC--AAGTTAACAGCTGGCCACATT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAAACATTTCAATTTCAACG------------------CACATA----
dm3 chr3L:3083760-3084064 + TCTCGCCAACGAATGGAATACCGTCAGAGAGTAAACTCGCCACTTATATGGTAAGCTA---ACTTCCC-AT------TCCC--T---CAATTAGCTCTTATCAGAGTC--CCTCC------AA--A--------A--TAAGAAAC-TCACGAAAACAGGGCGATAAGAGTTGA-GGGG-AGATTATGATAACACCA---------CTGCCCATC----GAAAACCACCCA--CTGAAAGCAGCTGTTGGCC-----------CCC--AAATTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAGTTTCAACGC--T-C-------AGTCGCTCATA----
droSim2 3l:2941403-2941706 + dsi_12848 TCTCGCCAACGAATGGAATACCGTCAGAGAGTAAACTCGCCACTTATATGGTAAGCCA---ACTTCCC-AT------T---ACC---CAATTAGCTCTTATCAGAGTC--CCTCC------AA--A--------A--TAAGAAAC-TCACGAAAACAGGGCGATAAGAGTTGA-GGGG-AGATTATGATAACATCA---------CCGCCCACC----GAAAACCACCCA--CTGAAAGCAGCTGTTGGCC-----------CCC--AAATTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAGTTTCAACGC--T-C-------AGTCGCACATA----
droSec2 scaffold_2:3077274-3077577 + TCTCGCCAACGAATGGAATACCGTCAGAGAGTAAACTCGCCACTTATATGGTAAGCCA---ACTTCCC-AT------T---ACC---CAATTAGCTCTTATCAGAGTC--CCTTC------AA--A--------A--TAAGAAAC-TCACGAAAACAGGGCGATAAGAGTTGA-GGGG-AGCTTATGATAACACCA---------CCGCCCACC----GAAAACCACCCA--CTGAAAGCAGCTGTTGGCC-----------CCC--AAATTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAGTTTCAACGC--T-C-------AGTCGCACATA----
droYak3 3L:8863465-8863776 - TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCCACTTATATGGTAAGCTA---ACTTCCC-CT-------CCCACC---CAATTAGCTCTTATCACAGTC--CCCC-------AA--AACA--AAAA-----TAAACCGATTGAAAACAGGGCGATAAGAGTTAA-GAGGAAGATTATGATAACACCA---------CCGCCCACCA--AAAAAACCACCCA--TTGAAAGCAGCTGTTGGCC-----------CCC--AAGTTAACAGCTGGCCACGTT----------TA-CGCGAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAGTTTCAACGC--T-C-------AGTCGCACATA----
droEre2 scaffold_4784:3091947-3092255 + TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCCACTTATATGGTAAGCTA---ACTTCCC-CT-------CCC------CAATCAGCTCTTATCAGAGTC--CCCC-------AA--AACATAAAA----A-AAAACCGTTTGAAAACAGGGCGATAAGAGTTGA-GCAGAAGATTATGATAACACCA---------CCTCCCACC----ATAAACCAACCA--TTGAAAGCAGCTGTTGGCC-----------CCC--AAGTTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TAGAACCATTTCAGTTTCAACGC--T-C-------AGTCGCACATA----
dp5 XR_group8:3946163-3946218 + ACTCGCCCACGAATGGTATTCCGTCAGAGAGTAAACTCGCTACTTATATGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_29:177538-177593 + ACTCGCCCACGAATGGTATTCCGTCAGAGAGTAAACTCGCTACTTATATGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004830:153721-153779 + TTTCACCTACGAATGGAATACCGTCAGAGAGTAAACTCGCCACATATATGGTAAGCAA---T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:129020-129074 + TTTCACCTTCAAACGGTATACCCTCTGAAAGTAAACTCGCCACTTATATGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:1011505-1011561 - TTTCGCCTTCAAATGGTATACCCTCTGAAAGTAAATTAGCCACATATATGGTAAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:1465797-1465852 + TTTCACCTTCAAATGGTATACCGTCTGAGAGTAAACTCGCCACTTATATGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCCACCTATATGGTAAGTAA---TC-A-----------------------------------------------------------------------------------------------------------------------------------CC--CACCACCCACCACC----CATCACCCCCGA--CTTAAAACAGCTGTTGCTC------A----GCA--AAGTCAACAGCTGGAATGGCAGTAAGCCTCAAGCCTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTGGCTCAATGGCTCACTGGCTCACTGAC-TCG--------CAGTTTCATCGGCCT-CCGT-----ATCGCACATACATASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................TACCGTCAGAGAGTAAACT.........................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
......................GTCAGAGAGTAAACTCGCCACCTATA..............................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.................ATACCGTCAGAGAGTAAACT.........................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.CTCGCCAACGAATGGTATACCGTCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
......CAACGAATGGTATACCGTCAGAGA................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
....................CCGTCAGAGAGTAAACTCGCCACC..................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
........................................................................................................................................................................................................................................................................................................................................................................................GAC-TCG--------CAGTTTCATCGGCCT-CC.....................2311.001010000
..................................................................................................................................................................................................................................................................................CAGCTGGAATGGCAGTAAGCCTCAAGC.................................................................................................................................2711.001010000
...CGCCAACGAATGGTATACC........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............ATGGTATACCGTCAGAGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
TCTCGCCATCGAATGGTATACCTTCAGAGAGTAAACTCGCCACCTATATGGTAAGTTC---CAGTACA--------------------------------------------------------------------------------------------------------------------------------CC--CA-CACCCACTA------------CGCCCACAACAAAAACAGCTGTTGGGA-----------GGA--AAGTCAACAGCTGGAATGGCTGA----C---TGCTTCAAGTATTTTTAATTATGTTTTTTTATTATTATTTGTTTT--------TCG------------------------G-TTGAAACATTTCAATTTCATCGGCCTTCCATACACATCGGCACATA----SizeHit CountTotal NormTotal
No Reads
droKik1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAGCTGCTTACCATGCTTATACCCCCAAAAGTTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTG------------------------CTTCGAAACATTTCAATTTCAACGC--T-C-------AGCCGCACATA----SizeHit CountTotal NormTotal
No Reads
droFic1
TCTCGCCAACGAATGGTATACCGTCAGAAAGTAAACTCGCTACTTATATGGTAAGTTA-GTGCCTCCC-CT--CTCCTCCC--TCCACAA--ACCTTTTATCACAGTT--CCCCC------GA--A--------AGCCAAG------CACAAAAGCAAGGCGATAACAGTTTT-GGGGAGGACTATTTTGACAC--------------CCCAAC----AAAAGCCACCCA--CTGAAAACAGCTGTTGGCC-----------CCC--AATTTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAATTTCAACGC--T-C-------AGTCGCACATA----SizeHit CountTotal NormTotal
No Reads
droEle1
TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCTACTTATATGGTAAGTTG---ACTTTTC-CTA-----TCCC--TTAACAA-----TTTTATCAAAAT-------------------------------A-GAA-----ACGAAAACAAGTTGATAACAGTTTATGGGGATGAATATCTTAACAACACCAACACCACC-CCCAAC----GAAATGCGCCCA--CATAAAACAGCTGTTGACC-----------GCC--AAGTCAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-CCGAAACATTTCAATTTCAACGC--T-C-------AGTTGCACATA----SizeHit CountTotal NormTotal
No Reads
droRho1
TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCTACTTATATGGTAAGTTT---GCTTATT-TTA-----TCCC------CAA--ACTTTTTATCAAAGTT--CCCCTG--A--AA--A--------A--TAAAAA-----ACGAAAACAAGGCGATAACACTTTATGTGGAAGAATATCTTAAC--------------CCCCCAAT----AGAAACCACCCA--CTGAAAACAGCTGTTGACC-----------GCC--AAGTTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTC---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAATTTCAACGC--T-T-------AGTAGCACATA----SizeHit CountTotal NormTotal
No Reads
droBia1
TCTCGCCAACGAATGGTATACCCTCAGAGAGTAAACTCGCTACTTATATGGTAAGTTT---GGCTCTCCCC-------GCCACC---CAAAACTTTCTTATCACGGTC--CCCCGC---------------------------CC-CCACGAAAACAAAGCGATAACAGTTTAAGGGGTAGATTATTATTATAGCC---------TCCCGGGCG----AAAAACCACCCA--CTGAAACCAGCTGTTGGCG-----------GCC--AAGTTAACAGCTGGCCACGTT----------TG-CTCGAGTACTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAATTTCAACGC--T-C-------GGTCGCACATA----SizeHit CountTotal NormTotal
No Reads
droTak1
TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCTACTTATATGGTAAGTGTA--ACTCCCC-CT-------CCC----------TATCTTTTATCAGAGTCTTCCCC----A-----------------------------CCAAAAACAAGACGATAACAGTTTAAGGGGAAGATTATTAAAG--CC-------------CCCAAA-TTCAAGAACCACCCA--CTGAAAGCAGCTGTTGGCC-----------GCC-AAAGTTAACAGCTGGCCACGTT----------TGCCTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAATTTCAACGT--T-C-------AGTCGCACATA----SizeHit CountTotal NormTotal
No Reads
droEug1
TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCAACTTATATGGTAAGTTA---ACTTCTCCGT-TCCACTCCC------AAA--AACTCTTATCAAAGTC--TCCCACCCACCAAACAACA--AAAA--TAAGA------ACGAAAACAAGGCGATAACAGTTTAAGGGGAAGATTATCATAACACC-------------CCCAAC----AAAAAGCACCCA--CTGAAAGCAGCTGTTGGCC-----------GCC--AAGTTAACAGCTGGCCACATT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAAACATTTCAATTTCAACG------------------CACATA----SizeHit CountTotal NormTotal
No Reads
dm3
TCTCGCCAACGAATGGAATACCGTCAGAGAGTAAACTCGCCACTTATATGGTAAGCTA---ACTTCCC-AT------TCCC--T---CAATTAGCTCTTATCAGAGTC--CCTCC------AA--A--------A--TAAGAAAC-TCACGAAAACAGGGCGATAAGAGTTGA-GGGG-AGATTATGATAACACCA---------CTGCCCATC----GAAAACCACCCA--CTGAAAGCAGCTGTTGGCC-----------CCC--AAATTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAGTTTCAACGC--T-C-------AGTCGCTCATA----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........GAATGGAATACCGTCAGAGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AATACCGTCAGAGAGTAAACT.........................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000020000000000000000000000000000
..................TACCGTCAGAGAGTAAACTCGCCAC...................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............TGGAATACCGTCAGAGAGTAAACTCGC......................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACCGTCAGAGAGTAAACTCGCCACT..................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GAATGGAATACCGTCAGAGAGTAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GGAATACCGTCAGAGAGTAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAATACCGTCAGAGAGTAAACTCGC......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...CGCCAACGAATGGAATACCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...CGCCAACGAATGGAATACCGTCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................ATTAACAGCTGGCCACGT...............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
...................ACCGTCAGAGAGTAAACTCGC......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACCGTCAGAGAGTAAACTC........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACCGTCAGAGAGTAAACT.........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AATGGAATACCGTCAGAGA................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......AACGAATGGAATACCGTCAGAGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACGAATGGAATACCGTCAGAGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................TAAGAAAC-TCACGAAAACAGGGCGATA.........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGGAATACCGTCAGAGAGTAAACTCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCGCCAACGAATGGAATACCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AACGAATGGAATACCGTCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
................AATACCGTCAGAGAGTAAACTC........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AATACCGTCAGAGAGTAAACTCGCCA....................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AATACCGTCAGAGAGTAAACTCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AACGAATGGAATACCGTCAGAGAGTAA............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACCGTCAGAGAGTAAACTCGCCACTTA................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATACCGTCAGAGAGTAAACT.........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AATGGAATACCGTCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAATACCGTCAGAGAGTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACGAATGGAATACCGTCAGAGAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATACCGTCAGAGAGTAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CCC-AT------TCCC--T---CAATTAGCTCTTAT.........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CGCCAACGAATGGAATACCGTCAGAGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AACAGCTGGCCACGTT----------TG-.................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGAATGGAATACCGTCAGAGA................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GTCAGAGAGTAAACTCGCCACT..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AACGAATGGAATACCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CACCA---------CTGCCCATC----GAAAACCACCCA--......................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATGGAATACCGTCAGAGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATACCGTCAGAGAGTAAACTC........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCTCGCCAACGAATGGAATACCGTCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GGAATACCGTCAGAGAGTAAACTCGCCAC...................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AATGGAATACCGTCAGAGAGTAA............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGAATGGAATACCGTCAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACCGTCAGAGAGTAAACTCGCCACT..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCTCGCCAACGAATGGAATACCGTCAGAGAGTAAACTCGCCACTTATATGGTAAGCCA---ACTTCCC-AT------T---ACC---CAATTAGCTCTTATCAGAGTC--CCTCC------AA--A--------A--TAAGAAAC-TCACGAAAACAGGGCGATAAGAGTTGA-GGGG-AGATTATGATAACATCA---------CCGCCCACC----GAAAACCACCCA--CTGAAAGCAGCTGTTGGCC-----------CCC--AAATTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAGTTTCAACGC--T-C-------AGTCGCACATA----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................ATACCGTCAGAGAGTAAACTC........................................................................................................................................................................................................................................................................................................................................................................................................2113.00300300000000000000
.............TGGAATACCGTCAGAGAGTAAACTCGCCA....................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
........................CAGAGAGTAAACTCGCCACTTAT...............................................................................................................................................................................................................................................................................................................................................................................................2311.00100000001000000000
..........GAATGGAATACCGTCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
..............GGAATACCGTCAGAGAGTAAACTC........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
..................TACCGTCAGAGAGTAAACTCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.......................TCAGAGAGTAAACTCGCCACT..................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
....GCCAACGAATGGAATACCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...........AATGGAATACCGTCAGAGAGTAAACTCGCCA....................................................................................................................................................................................................................................................................................................................................................................................................3111.00100000010000000000
.................ATACCGTCAGAGAGTAAACTCG.......................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.................ATACCGTCAGAGAGTAAACTCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
droSec2
TCTCGCCAACGAATGGAATACCGTCAGAGAGTAAACTCGCCACTTATATGGTAAGCCA---ACTTCCC-AT------T---ACC---CAATTAGCTCTTATCAGAGTC--CCTTC------AA--A--------A--TAAGAAAC-TCACGAAAACAGGGCGATAAGAGTTGA-GGGG-AGCTTATGATAACACCA---------CCGCCCACC----GAAAACCACCCA--CTGAAAGCAGCTGTTGGCC-----------CCC--AAATTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAGTTTCAACGC--T-C-------AGTCGCACATA----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................TACCGTCAGAGAGTAAACTCGCCACT..................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
......................GTCAGAGAGTAAACTCGCCACTTATAT.............................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
...CGCCAACGAATGGAATACCGT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGC--T-C-------AGTCGCACA......1911.0010010
...................ACCGTCAGAGAGTAAACTCG.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
droYak3
TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCCACTTATATGGTAAGCTA---ACTTCCC-CT-------CCCACC---CAATTAGCTCTTATCACAGTC--CCCC-------AA--AACA--AAAA-----TAAACCGATTGAAAACAGGGCGATAAGAGTTAA-GAGGAAGATTATGATAACACCA---------CCGCCCACCA--AAAAAACCACCCA--TTGAAAGCAGCTGTTGGCC-----------CCC--AAGTTAACAGCTGGCCACGTT----------TA-CGCGAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TCGAACCATTTCAGTTTCAACGC--T-C-------AGTCGCACATA----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................TACCGTCAGAGAGTAAACTC........................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000
.........CGAATGGTATACCGTCAGAGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...................ACCGTCAGAGAGTAAACTCG.......................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
........ACGAATGGTATACCGTCAGAGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...................ACCGTCAGAGAGTAAACTCGC......................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.................ATACCGTCAGAGAGTAAACTCGC......................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...CGCCAACGAATGGTATACCGT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............GGTATACCGTCAGAGAGTAAACTA........................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..................................................................................................................................................GATTGAAAACAGGGCGATAAGA......................................................................................................................................................................................................................................................................2211.00100000010000
.................ATACCGTCAGAGAGTAAACT.........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEre2
TCTCGCCAACGAATGGTATACCGTCAGAGAGTAAACTCGCCACTTATATGGTAAGCTA---ACTTCCC-CT-------CCC------CAATCAGCTCTTATCAGAGTC--CCCC-------AA--AACATAAAA----A-AAAACCGTTTGAAAACAGGGCGATAAGAGTTGA-GCAGAAGATTATGATAACACCA---------CCTCCCACC----ATAAACCAACCA--TTGAAAGCAGCTGTTGGCC-----------CCC--AAGTTAACAGCTGGCCACGTT----------TG-CTCAAGTATTTTTAATTATGCTTT---------ATTTGTTTTCACTCAATTTA------------------------C-TAGAACCATTTCAGTTTCAACGC--T-C-------AGTCGCACATA----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............GGTATACCGTCAGAGAGTAAACTC........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
...............GTATACCGTCAGAGAGTAAACTCG.......................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
....GCCAACGAATGGTATACCGTCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.................................AACTCGCCACTTATATGGT..........................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..............GGTATACCGTCAGAGAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
........ACGAATGGTATACCGTCAGAGAGTAA............................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
......CAACGAATGGTATACCGTCAGAGA................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
dp5
ACTCGCCCACGAATGGTATTCCGTCAGAGAGTAAACTCGCTACTTATATGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........ACGAATGGTATTCCGTCAGAGA................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............GGTATTCCGTCAGAGAGTAAACTCGCTA....................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001000000
droPer2
ACTCGCCCACGAATGGTATTCCGTCAGAGAGTAAACTCGCTACTTATATGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................GTCAGAGAGTAAACTCGCTA....................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..............GGTATTCCGTCAGAGAGTAAACTCGC......................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droWil2
TTTCACCTACGAATGGAATACCGTCAGAGAGTAAACTCGCCACATATATGGTAAGCAA---T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................ATACCGTCAGAGAGTAAACTC........................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000
..............GGAATACCGTCAGAGAGTAAACTCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................2712.00220000
.................ATACCGTCAGAGAGTAAACTCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................2412.00200200
...CACCTACGAATGGAATACCGTCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001
..............GGAATACCGTCAGAGAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
..........................GAGAGTAAACTCGCCACATATATGAA..........................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
....ACCTACGAATGGAATACCGT......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.................ATACCGTCAGAGAGTAAACTCGCCAC...................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
..TCACCTACGAATGGAATACCGTCAGAGA................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
.......TACGAATGGAATACCGTCAGAGA................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.................ATACCGTCAGAGAGTAAACT.........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
droVir3
TTTCACCTTCAAACGGTATACCCTCTGAAAGTAAACTCGCCACTTATATGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................CCCTCTGAAAGTAAACTCGCCAC...................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
.................ATACCCTCTGAAAGTAAACT.........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
..........AAACGGTATACCCTCTGAAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
......................CTCTGAAAGTAAACTCGCCACTT.................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......CTTCAAACGGTATACCCTCTGAAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
TTTCGCCTTCAAATGGTATACCCTCTGAAAGTAAATTAGCCACATATATGGTAAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........AATGGTATACCCTCTGAAAGTAA............................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............GGTATACCCTCTGAAAGTAA............................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
TTTCACCTTCAAATGGTATACCGTCTGAGAGTAAACTCGCCACTTATATGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................TACCGTCTGAGAGTAAACTCGCCACTT.................................................................................................................................................................................................................................................................................................................................................................................................2711.00110

Generated: 05/18/2015 at 04:45 AM