ID:

dan_251

Coordinate:

scaffold_12903:560007-560068 +

Confidence:

candidate

Class:

Testes-restricted

Genomic Locale:

intergenic

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in alignment

mismatch in read

Predicted structure

-31.2	-31.1	-31.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAGCGAAAAAAAAACCGAAAAATTCCTTATCGAGGGAGGCAGGTCTTTGGTGGCTACTTAAATTGCTTGTGTGGCGAGAGAGTACACACATAAGCGATTAGAGTAACCTTTCGGGATCCGTTCCAGCAACAGCAACTGCATATATAGAGTATATTATTTATG *********************************..(((.((((((....((.(((((.(((((((((((((.............))))))))))))).))))).))....)))))).)))....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	V055 head	M044 female body	V105 male body
..................................................TGGCTACTTAAATTGCTTGTGTGT........................................................................................	24	1	1	7.00	7	3	0	4	0
..................................................TGGCTACTTAAATTGCTTGTGT..........................................................................................	22	0	1	6.00	6	2	3	0	1
..................................................TGGCTACTTAAATTGCTTGTGTGTT.......................................................................................	25	2	1	1.00	1	1	0	0	0
..................................................TGGCTACTTAAATTGCTTGTGTT.........................................................................................	23	1	1	1.00	1	1	0	0	0
.....................................................CTACTTAAATTGCTTGTGTGGCT......................................................................................	23	1	1	1.00	1	1	0	0	0
...................................................GGCTACTTAAATTGCTTGTGTGT........................................................................................	23	1	1	1.00	1	0	0	1	0
.........................................................................................ATAAGCGATTAGAGTAACCTTT...................................................	22	0	1	1.00	1	0	1	0	0
..................................................TGGCTACTTAACTTGCTTGT............................................................................................	20	1	1	1.00	1	0	1	0	0
.....................................................CTACTTAAATTGCTTGTGTGGCG......................................................................................	23	0	1	1.00	1	1	0	0	0
.............................TCGGGGGAGGCAGATCT....................................................................................................................	17	2	10	0.10	1	0	1	0	0
..................................................................................TACAAACATAAGCGCTTACA............................................................	20	3	14	0.07	1	0	1	0	0

Anti-sense strand reads

TTCGCTTTTTTTTTGGCTTTTTAAGGAATAGCTCCCTCCGTCCAGAAACCACCGATGAATTTAACGAACACACCGCTCTCTCATGTGTGTATTCGCTAATCTCATTGGAAAGCCCTAGGCAAGGTCGTTGTCGTTGACGTATATATCTCATATAATAAATAC **********************************..(((.((((((....((.(((((.(((((((((((((.............))))))))))))).))))).))....)))))).)))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo
................................................CCACCGATGAATTTAAGTAA..............................................................................................	20	2	2	0.50	1	1
..CGCTTTTTATTTGGCTTTT.............................................................................................................................................	19	1	5	0.20	1	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Type	Alignment
droAna3	scaffold_12903:559957-560118 +	dan_251	candidate	AAG-CGAA---------AAAAAAACCGAAAAATTCCTTATCGAGGGAGGCAGGTCT-TTGGTGGCTACTTAAATTGCTTGTGTGGCGAGAGAGTACACACATAAGCGATTAGAGTAACCTTTCGGGATCCGTTCCAGCAAC-------------AGCAACTGCATATATAGAGTATATTATTTATG
droBip1	scf7180000395925:48291-48454 -			AGTGCAAAAAACTGACAAAAAAAACCGAAAAACTTCTTATCTTCGGAGGCAGGTCT-TTAGTGTCCTCACTATTCGGGTACATGGTGATTTTATACACATATACACGATTAGCGTTGACGTTTAAGATCCGTTCCAGC-------------------ACCTGCATATATA--TAGTATTATTTATG
droEle1	scf7180000490751:845095-845240 -			AAA-CA-C---------TAGGAAGCTTA-----TCTTTGGCGGTGGGGGCAGGTCTCTTTGTGCCT---AGGT--------------CTGAAATGGTCACATTCCCGATTATATGGCCAAGTCATGATCCTCGTCACTGGTACTAAAAAGAAATTGCTGTTG-------CCGTTGTTTTATTTATG
droTak1	scf7180000415843:938913-939061 +			ATT-CGAA---------TAGGAGGCTTA-----TCTTTTGCGCTGGGGGCAGGTCT-TTTATGCCTCCTCGTT--------------CCCAAATGCTCATATTCCCGATTATATGGCCGTGTCATGATCCTCGTCACTTGAACGAGAAAGAAACTGCTGTTG-------CCGTTGTTTTATTTGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

AAG-CGAA---------AAAAAAACCGAAAAATTCCTTATCGAGGGAGGCAGGTCT-TTGGTGGCTACTTAAATTGCTTGTGTGGCGAGAGAGTACACACATAAGCGATTAGAGTAACCTTTCGGGATCCGTTCCAGCAAC-------------AGCAACTGCATATATAGAGTATATTATTTATG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................TGGCTACTTAAATTGCTTGTGTGT.....................................................................................................	24	1	7.00	7	4	0	0	0	0	3
.............................................................TGGCTACTTAAATTGCTTGTGT.......................................................................................................	22	1	6.00	6	0	0	0	3	1	2
.............................................................TGGCTACTTAAATTGCTTGTGTGTT....................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.............................................................TGGCTACTTAAATTGCTTGTGTT......................................................................................................	23	1	1.00	1	0	0	0	0	0	1
................................................................CTACTTAAATTGCTTGTGTGGCT...................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..............................................................GGCTACTTAAATTGCTTGTGTGT.....................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................ATAAGCGATTAGAGTAACCTTT................................................................	22	1	1.00	1	0	0	0	1	0	0
................................................................CTACTTAAATTGCTTGTGTGGCG...................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droBip1

AGTGCAAAAAACTGACAAAAAAAACCGAAAAACTTCTTATCTTCGGAGGCAGGTCT-TTAGTGTCCTCACTATTCGGGTACATGGTGATTTTATACACATATACACGATTAGCGTTGACGTTTAAGATCCGTTCCAGC-------------------ACCTGCATATATA--TAGTATTATTTATG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAA-CA-C---------TAGGAAGCTTA-----TCTTTGGCGGTGGGGGCAGGTCTCTTTGTGCCT---AGGT--------------CTGAAATGGTCACATTCCCGATTATATGGCCAAGTCATGATCCTCGTCACTGGTACTAAAAAGAAATTGCTGTTG-------CCGTTGTTTTATTTATG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATT-CGAA---------TAGGAGGCTTA-----TCTTTTGCGCTGGGGGCAGGTCT-TTTATGCCTCCTCGTT--------------CCCAAATGCTCATATTCCCGATTATATGGCCGTGTCATGATCCTCGTCACTTGAACGAGAAAGAAACTGCTGTTG-------CCGTTGTTTTATTTGTG	Size	Hit Count	Total Norm	Total
No Reads

Generated: 10/20/2015 at 07:29 PM