ID:

dan_2503

 Coordinate:

scaffold_13337:8475555-8475705 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.1 -11.2 -11.1

Flybase annnotation

CDS [Dana\GF24303-cds]; exon [dana_GLEANR_9036:3]; intron [Dana\GF24303-in]

No Repeatable elements found

mature
star
  1. scaffold_189:1787-1812 +
  2. scaffold_4611:246-271 -
  3. scaffold_8216:1731-1756 +
  4. scaffold_8862:1016-1041 -
  5. scaffold_9859:839-864 -
  6. scaffold_10417:3025-3050 +
  7. scaffold_12392:74083-74108 +
  8. scaffold_12690:8171-8196 +
  9. scaffold_12719:4744-4769 +
  10. scaffold_12916:6917948-6917973 +
  11. scaffold_12916:6925398-6925423 +
  12. scaffold_12966:103519-103544 +
  13. scaffold_12984:619714-619739 +
  14. scaffold_13050:2033-2058 -
  15. scaffold_13079:394536-394561 +
  16. scaffold_13082:3243822-3243847 +
  17. dan_2503  scaffold_13337:8475606-8475631 -
  18. scaffold_13337:21722187-21722212 -
  19. scaffold_13337:21730073-21730098 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACAAGGCATCGGGCTACCATTATGGTGTAACCTCCTGCGAGGGTTGTAAGGTGAGTTTTTCTTGAAACTTCCATTTCCAATGTACATATTGTAACCTCTTGCCTAGCTTTATCCAGCTACTGCATAATGTACTAGGTACTCGCAACGGGACTCTTATTAATGGGGAGCTCTGTCGGGAGATGGGGTGGGTTTTTTGCTAATACCAGTACATAAGGTTACTTTAAGATTAATCAAAGAGTCCCTACTGTAGC
****************************************************************************************((..........(((((((.((((.(((...))).)))).))..)))))...........))***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body		 V106
head
 V055
head
........................................................................................TTGTAACCTCTTGCCTAGCTTTATCC......................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0
............................................................................................................................TAATGTACTAGGTACTCGCAACGGGA..................................................................................................... 26 0 19 1.32 25 10 13 1 1 0 0
............................................................................................................................TAATGTACTAGGTACTCGCAACGGGAC.................................................................................................... 27 0 19 1.16 22 2 19 1 0 0 0
............................................................................................................................TAATGTACTAGGTACTCGCAACGGG...................................................................................................... 25 0 19 1.11 21 5 12 4 0 0 0
........................................................................................TTGGAACCTCTTGCCTAGCTTTATC.......................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
..................................................................ACTTCCATTTCCAATGTACATAT.................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
..............................................................TGAAACTTCCATTTCCAATGTACATAT.................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...................................................................................ACATATTGTAACCTCTTGCCTAGC................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0
........................................................................................TTGTAACATCTTGCCTAGCTTTATC.......................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAACCTCTTGCCTAGCTTTATCCAGC...................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................TTGTAACCTCTTGCCTAGCTTTATC.......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................TCTTATTAATGGGGAGCTCTGTCGGGA......................................................................... 27 0 6 0.83 5 2 3 0 0 0 0
.......................................................................................................................................................TCTTATTAATGGGGAGCTCTGTC............................................................................. 23 0 6 0.50 3 2 1 0 0 0 0
............................................................................................................................TAATGTACTAGGTACTCGCAACGG....................................................................................................... 24 0 19 0.47 9 1 8 0 0 0 0
................................................................................................................................................................................................................................GATTAATCAAAGAGTCCCTACTGTAGC 27 0 20 0.40 8 0 6 0 2 0 0
.......................................................................................................................................................TCTTATTAATGGGGAGCTCTGT.............................................................................. 22 0 6 0.33 2 1 1 0 0 0 0
...........................................................................................................................................TCGCAACGGGACTCTTATTAATGG........................................................................................ 24 0 6 0.33 2 0 2 0 0 0 0
.......................................................................................................................................................TCTTATTAATGGGGAGCTCTGTCGG........................................................................... 25 0 6 0.33 2 1 1 0 0 0 0
........................................................................................................................................TACTCGCAACGGGACTCTTATTAATGG........................................................................................ 27 0 6 0.33 2 0 2 0 0 0 0
.....................................................................................................................TACTGCATAATGTACTAGGTACTCGC............................................................................................................ 26 0 19 0.32 6 3 2 1 0 0 0
....................................................................................................................CTACTGCATAATGTACTAGGTACTCG............................................................................................................. 26 0 20 0.30 6 1 0 0 2 3 0
...............................................................................................................................TGTACTAGGTACTCGCAACGGGACTCT................................................................................................. 27 0 18 0.28 5 2 3 0 0 0 0
...................................................................................................................................................................................................................................TAATCAAAGAGTCCCTACTGTAGC 24 0 20 0.25 5 4 0 1 0 0 0
...........................................................................................................................................TCGCAACGGGACTCTTATTAATGGGGA..................................................................................... 27 0 6 0.17 1 0 1 0 0 0 0
............................................................................................................................................CGCAACGGGACTCTTATTAATGGGGAGC................................................................................... 28 0 6 0.17 1 0 1 0 0 0 0
.............................................................................................................................................................TAATGGGGAGCTCTGTCGGGAGA....................................................................... 23 0 6 0.17 1 1 0 0 0 0 0
..........................................................................................................................................................TATTAATGGGGAGCTCTGTCGGGAGA....................................................................... 26 0 6 0.17 1 0 1 0 0 0 0
............................................................................................................................................................TTATTGGGGAGCTCTGTCGGGAGA....................................................................... 24 1 6 0.17 1 1 0 0 0 0 0
.............................................................................................................................................................TAATGGGGAGCTCTGTCGGG.......................................................................... 20 0 6 0.17 1 0 0 0 1 0 0
.............................................................................................................................................................TAATGGGGAGCTCTGTCGGGAGAT...................................................................... 24 0 6 0.17 1 0 1 0 0 0 0
.................................................................................................................................................CGGGACTCTTATTAATGGGGAGC................................................................................... 23 0 6 0.17 1 1 0 0 0 0 0
...........................................................................................................................................TCGCAACGGGACTCTTATTAATGGGG...................................................................................... 26 0 6 0.17 1 0 1 0 0 0 0
...................................................................................................................GCTACTGCATAATGTACTAGGTACTCGC............................................................................................................ 28 0 19 0.16 3 3 0 0 0 0 0
.................................................................................................................................TACTAGGTACTCGCAACGGGAC.................................................................................................... 22 0 20 0.15 3 0 1 2 0 0 0
.............................................................................................................................AATGTACTAGGTACTCGCAACGGGAC.................................................................................................... 26 0 20 0.15 3 0 3 0 0 0 0
...............................................................................................................................TTTACTAGGTACTCGCAACGGGACT................................................................................................... 25 1 18 0.11 2 2 0 0 0 0 0
............................................................................................................................TAATGTACAAGGTACTCGCAACGGG...................................................................................................... 25 1 19 0.11 2 0 2 0 0 0 0
............................................................................................................................TAATGTACTAGGTACTCGCAACG........................................................................................................ 23 0 19 0.11 2 1 1 0 0 0 0
........................................................................................................................................................................................................................TACTTTAAGATTAATCAAAGAGTCCC......... 26 0 20 0.10 2 2 0 0 0 0 0
.................................................................................................................................................................................................TTGCTAATACCAGTACATAAGGTTAC................................ 26 0 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................AATGTACTAGGTACTCGCAACGGG...................................................................................................... 24 0 20 0.10 2 1 1 0 0 0 0
.................................................................................................................................................................................................................................ATTAATCAAAGAGTCCCTACTGTAGC 26 0 20 0.10 2 0 0 0 0 2 0
.............................................................................................................................................................................................................................TAAGATTAATCAAAGAGTCCCTACTGTA.. 28 0 20 0.10 2 0 2 0 0 0 0
...............................................................................................................................................................................................TTTTGCTAATACCAGTACATAAGGT................................... 25 0 20 0.10 2 1 1 0 0 0 0
..............................................................................................................................................................................................................................AAGATTAATCAAAGAGTCCCTACTGT... 26 0 20 0.10 2 1 0 0 1 0 0
................................................................................................................................................................CGGGGAGCTCAGTCGGGAGA....................................................................... 20 2 12 0.08 1 0 0 0 0 0 1
.................................................................................................................................................CGGGACGCGCATTAATGGG....................................................................................... 19 3 13 0.08 1 0 0 0 0 0 1
...............................................................................................................................TGTACTAGGTACTCGCAACTGGACTCT................................................................................................. 27 1 18 0.06 1 0 1 0 0 0 0
...............................................................................................................................TGCACTAGGTACTCGCAACGGGACT................................................................................................... 25 1 18 0.06 1 1 0 0 0 0 0
...............................................................................................................................TGTACTAGGTACTCACAACGGGACTC.................................................................................................. 26 1 18 0.06 1 0 0 0 1 0 0
............................................................................................................................TAATGGACTAGGTACTCGCAACGGGAC.................................................................................................... 27 1 19 0.05 1 1 0 0 0 0 0
...........................................................................................................................ATAATGTACTAGGTACTCGCAACGGGA..................................................................................................... 27 0 19 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................TCTGTCGGGAGATGGGGTGGGTTT........................................................... 24 0 19 0.05 1 0 1 0 0 0 0
............................................................................................................................TAATGTACTAGGTACTCGCCACGGG...................................................................................................... 25 1 19 0.05 1 0 0 1 0 0 0
............................................................................................................................TAATGGACTAGGGACTCGCAACGGGAC.................................................................................................... 27 2 19 0.05 1 0 0 1 0 0 0
.........................................................................................................................GCATAATGTACTAGGTACTCGCAACGG....................................................................................................... 27 0 19 0.05 1 0 0 0 0 0 1
............................................................................................................................TAATGTACCAGGTACTCGCAACGGG...................................................................................................... 25 1 19 0.05 1 0 1 0 0 0 0
............................................................................................................................TAATGTACTAGGTACTCGCAACAGG...................................................................................................... 25 1 19 0.05 1 0 1 0 0 0 0
............................................................................................................................TAATGTACTAGGTACTCGCAACGAG...................................................................................................... 25 1 19 0.05 1 0 1 0 0 0 0
............................................................................................................................TAATGTACTAGGTACTCGCAACGGGAT.................................................................................................... 27 1 19 0.05 1 0 0 0 0 1 0
...........................................................................................................................ATAATGTACTAGGTACTCGCAACGGGAC.................................................................................................... 28 0 19 0.05 1 0 0 0 1 0 0
............................................................................................................................TAATGTACGAGGTACTCGCAACGGGAC.................................................................................................... 27 1 19 0.05 1 0 1 0 0 0 0
............................................................................................................................TAATGTACTAGGTACTCGCAAGGGGAC.................................................................................................... 27 1 19 0.05 1 0 1 0 0 0 0
........................................................................................................................................................................TCTGTCGGGAGATGGGGTGGGTTTT.......................................................... 25 0 19 0.05 1 0 1 0 0 0 0
..........................................................................................................................CATAATGTACTAGGTACTCGCAACGG....................................................................................................... 26 0 19 0.05 1 0 1 0 0 0 0
........................................................................................................................TGCATAATGTACTAGGTACTCGCAACGG....................................................................................................... 28 0 19 0.05 1 1 0 0 0 0 0
............................................................................................................................TAATGTACGAGGTACTCGCAACGGG...................................................................................................... 25 1 19 0.05 1 0 1 0 0 0 0
............................................................................................................................TAATGTACTAGGTACTCGCAACTGGA..................................................................................................... 26 1 19 0.05 1 1 0 0 0 0 0
............................................................................................................................TAATGTACGAGGTACTCGCAACGGGA..................................................................................................... 26 1 19 0.05 1 0 1 0 0 0 0
............................................................................................................................TGATGTACTAGGTACTCGCAACGGG...................................................................................................... 25 1 19 0.05 1 1 0 0 0 0 0
...........................................................................................................................CTAATGTACTAGGTACTCGCAACGGGA..................................................................................................... 27 1 19 0.05 1 0 1 0 0 0 0
............................................................................................................................TAATGTACTAGGTACTCGCAAAGGGA..................................................................................................... 26 1 19 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................AGATTAATCAAAGAGTCCCTACTGTAGC 28 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................GAATGTACTAGGTACTCGCAACGGGA..................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................................GTTCTATCCGGAGATGGGGT................................................................. 20 3 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................................................TTTTGCTAATACCAGTACATAAGGTTAC................................ 28 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................AGCTACTGCATAATGTACTAGGTAC................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................................TAATACCAGTACATAAGGTTAC................................ 22 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TTAATCAAAGAGTCCCTACTGTAGC 25 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................TAAGATTAATCAAAGAGTCCCTAC...... 24 0 20 0.05 1 0 0 1 0 0 0
...............................................................................................................................................................................AGGGATCGGGTGGGTTTTTT........................................................ 20 3 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................TGTACTAGGTACTCGCAACGGG...................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................................................................TAATACCAGTACATAAGGTTACTTT............................. 25 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................GGGAGCTCTGTCGGAAGATGGG................................................................... 22 1 20 0.05 1 0 0 1 0 0 0
...............................................................................................................................................................................................................................ATATTAATCAAAGAGTCCCTACTGTAGC 28 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................TAATCAAAGAGTCCCTACTGT... 21 0 20 0.05 1 0 0 0 1 0 0
................................................................................................................................................................................................TTTGCTAATACCAGTACATAAGGTTAC................................ 27 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................GGTCTATCCGGAGATGGGGT................................................................. 20 3 20 0.05 1 0 0 0 1 0 0
.....................................................................................................................TACTGCATAATGTACTAGGTACTCG............................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................GGACTAGGTACTCGCAACGGGACT................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................TACTGCATAATGTACTAGGTACTCGA............................................................................................................ 26 1 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................AATGTACTAGGTACTCGCAACGG....................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................................GTACTAGGGACTCGCAACGGGACTCTTA............................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................TACTAGGTACTCGCAACGGGACTCT................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................ACTAGTTACTCGCAACGGGAC.................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................GGGAGCTCAGTCGGTAGAT...................................................................... 19 2 20 0.05 1 0 0 0 0 1 0
.............................................................................................................................AATGTACTAGGTACTCGCAACGGGA..................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................AAGATTAATCAAAGAGTCCCTACTGTAG. 28 0 20 0.05 1 0 0 1 0 0 0
....................................................................................................................CTACTGCATAATGTACTAGGTACTCGTT........................................................................................................... 28 2 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................................................TTTTTTGCTAATACCAGTACATAAGGT................................... 27 0 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................TACTAGGTACTCGCAACGGGACTCTTA............................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................AGCTACTGCATAATGTACTAGGTACTCG............................................................................................................. 28 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................TAAGATTAATCAAAGAGTCCCTACTGC... 27 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................TAATCAAAGAGTCCCTACTGTAG. 23 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................................................................................................GATTAATCAAGGAGTCCCTACTGTA.. 25 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................TTTTTGCTAATACCAGTACATAAGGTTA................................. 28 0 20 0.05 1 0 1 0 0 0 0
............................................................................................................................GAATGTACTAGGTACTCGCAACGGGAC.................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................TCTGTCGGGAGATGGGGTGG............................................................... 20 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................AAGATTAATCAAAGAGTCCCTACTGTA.. 27 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................TGTTTGCTAATACCAGTACATAAGGT................................... 26 1 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................GTCGGGCTCTGTCGGGAG........................................................................ 18 3 20 0.05 1 0 0 0 0 0 1
.......................................................................................................................................GTACTGACAAGGGGACTCT................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0
.............................................................................................................................................................................................................................TAAGATTAATCAAAGAGTCCCTACTGT... 27 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................TAATCAAAGAGTCCCTA....... 17 0 20 0.05 1 0 0 0 0 0 1
...................................................................................................................................................................................................................................TAATCAAAGAGTACCTACTG.... 20 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................TTTTTGCTAATACCAGTACATAAGGT................................... 26 0 20 0.05 1 0 1 0 0 0 0
.............GTACTATTAAGGTGTAAC............................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0
.................................................................................................................................TACTAGGTACTCGCAACGGGACTCC................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................TAAGATTAATCAAAGAGTCCCTACTGTAG. 29 0 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................TAATCAAAGAGACCCTACTGTAG. 23 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................AAGATTAAGCAAAGAGTCCCTACTGTAG. 28 1 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TGTTCCGTAGCCCGATGGTAATACCACATTGGAGGACGCTCCCAACATTCCACTCAAAAAGAACTTTGAAGGTAAAGGTTACATGTATAACATTGGAGAACGGATCGAAATAGGTCGATGACGTATTACATGATCCATGAGCGTTGCCCTGAGAATAATTACCCCTCGAGACAGCCCTCTACCCCACCCAAAAAACGATTATGGTCATGTATTCCAATGAAATTCTAATTAGTTTCTCAGGGATGACATCG
*****************************************************************************************************((..........(((((((.((((.(((...))).)))).))..)))))...........))**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V039
embryo
 V106
head
 V055
head
............................................................................................................AATAGGTCGATGACGTATTACATGAT..................................................................................................................... 26 0 1 4.00 4 3 1 0 0 0 0
.......................................TCCCAACATTCCACTCAAAAAGAACTT......................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
..................................................................TGAAGGTAAAGGTTACATGTATAACAT.............................................................................................................................................................. 27 0 1 2.00 2 1 1 0 0 0 0
........................................CCCAACATTCCACTCAAAAAGAACT.......................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.................................................................................CATGTATAACATTGGAGAACGCAT.................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................GGATCGAAATAGGTCGATGACGT............................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
..................................................................TGAAGGTAAAGGTTCCATGTATAACAT.............................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
........................................CCCAACATTCCACTCAAAAAGAACTTT........................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
......ATAGCCCGATGGTAATACCACA............................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................AAAGGTTACATGTATAACTT.............................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.......................................TCCCAACATTCCACTCAAAAAGAACT.......................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CGAAATAGGTCGATGACGTATTACA......................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.................................................................................CATGTATAACATTGGAGAACGGATCG................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0
.............................................................AACTTTGAAGGTAAAGGTTACATGTAT................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........................................CCCAACATTCCACTCAAAAAGAACTT......................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................CCACTCAAAAAGAACTTTGAAGGTAAATG............................................................................................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................CCCACCCAAAAAACGATTATGGTCATGT......................................... 28 0 4 1.00 4 4 0 0 0 0 0
........................................................................................................TCGAAATAGGTCGATGACGTATT............................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................AAATAGGTCGATGACGTATTACATGAT..................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0
..TTCCGTAGCCCGATGGTAATACCACAT.............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................GGAGAACGGATCGTAATAGGT........................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................................GAAATAGGTCGATGACGTATTACA......................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
.................................................................................CATGTATAACATTGGAGAACGGAGCGA............................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
....CCGTAGCCCGATGGTAATACCACAT.............................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.......................CCACATTGGAGGACGCTCCCAACAT........................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................CCTCTACCCCACCCAAAAAACGATTAT................................................. 27 0 4 0.50 2 2 0 0 0 0 0
.......................................................................................................................................................................................CCACCCAAAAAACGATTATGGTCATTT......................................... 27 1 4 0.50 2 2 0 0 0 0 0
.......................................................................................................................................................................................CCACCCAAAAAACGATTATGGTCA............................................ 24 0 4 0.50 2 2 0 0 0 0 0
......................................................................................................................................CCATGAGCGTTGCCCTGAGAATAATTA.......................................................................................... 27 0 20 0.45 9 5 3 1 0 0 0
...............................................................................................................................................................CACCCCTCGAGACAGCCCTCTACCCCAC................................................................ 28 1 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................................................................................CCACCCAAAAAACGATTATGGTCATGTAT....................................... 29 0 4 0.25 1 1 0 0 0 0 0
.......................................................................................................................................................................................CCACCCAAAAAACGATTATGGTCATGT......................................... 27 0 4 0.25 1 1 0 0 0 0 0
.............................................................................................................................................................................GCCCTCTACCCCACCCAAAAAACGAT.................................................... 26 0 4 0.25 1 0 1 0 0 0 0
............................................................................................................................................................................AGCCCTCTACCCCACCCAAAAAACGAT.................................................... 27 0 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................................CCCTCTACCCCACCCAAAAAACGAGT................................................... 26 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................................................................................................ACCCCACCCAAAAAACGATTATGGTCA............................................ 27 0 4 0.25 1 0 1 0 0 0 0
...........................................................................................................................................................................CAGCCCTCTACCCCACCCAAAAAACGAT.................................................... 28 0 4 0.25 1 1 0 0 0 0 0
..................................................................................................................................................................................CTACCCCACCCCTAAAACGATTAT................................................. 24 2 4 0.25 1 0 0 0 1 0 0
..............................................................................................................................................................................CCCTCTACCCCACCCAAAAAACGATT................................................... 26 0 4 0.25 1 0 1 0 0 0 0
......................................................................................................................................................................................CCCACCCAAAAAACGATTATGGTCTTGT......................................... 28 1 4 0.25 1 1 0 0 0 0 0
..........................................................................................................................................................................ACAGCCCTCTACCCCACCCAAAAAACGAT.................................................... 29 0 4 0.25 1 0 1 0 0 0 0
................................................................................................................................................................................CTCTACCCCACCCAAAAAACGATTA.................................................. 25 0 4 0.25 1 1 0 0 0 0 0
................................................................................................................................................................ACCCCTCGAGACAGCCCTCTACCCC.................................................................. 25 0 5 0.20 1 0 1 0 0 0 0
....................................................................................................................................................CTGAGAATAATTACCCCTCGACAGC.............................................................................. 25 3 6 0.17 1 1 0 0 0 0 0
....................................................................................................................................................CTGAGAATAATTACCCCTCGAGACAG............................................................................. 26 0 6 0.17 1 0 0 0 1 0 0
..........................................................................................................................................GAGCGTTGCCCTGAGAATAATTACCC....................................................................................... 26 0 6 0.17 1 0 1 0 0 0 0
....................................................................................................................................................CTGAGAATAATTACCCCTCGAGACAGC............................................................................ 27 0 6 0.17 1 1 0 0 0 0 0
......................................................................................................................................CCATGAGCGTTGCCCTGAGAATAATTAC......................................................................................... 28 0 6 0.17 1 0 1 0 0 0 0
..............................................................................................................................................GTTGCCCTGAGAATAATTACCC....................................................................................... 22 0 6 0.17 1 0 1 0 0 0 0
............................................................................................................................................GCGTTGCCCTGAGAATAATTACCCCT..................................................................................... 26 0 6 0.17 1 0 1 0 0 0 0
...................................................................................................................................................CCTGAGAATAATTACCCCTCGAGACAG............................................................................. 27 0 6 0.17 1 1 0 0 0 0 0
.........................................................................................................................................TGAGCGTTGCCCTGAGAATAATTA.......................................................................................... 24 0 20 0.15 3 1 0 1 1 0 0
.............................................................................................................ATAGGTCGATGACGTATTACATGAT..................................................................................................................... 25 0 20 0.15 3 0 1 0 1 1 0
............................................................................................................................................................................................CAAAAAACGATTATGGTCATGTAT....................................... 24 0 7 0.14 1 0 0 0 0 1 0
....................................................................................................................................................................................................................TCCAATGAAATTCTAATTAGTTTCT.............. 25 0 20 0.10 2 2 0 0 0 0 0
...............................................................................................................................................................................................................................TCTAATTAGTTTCTCAGGGATGACA... 25 0 20 0.10 2 0 2 0 0 0 0
.......................................CCCCCACACTCCACTCAAAA................................................................................................................................................................................................ 20 3 12 0.08 1 1 0 0 0 0 0
......................ACCACCTCGGCGGACGCTCC................................................................................................................................................................................................................. 20 3 18 0.06 1 0 0 0 0 0 1
....................................................................................................................................................................CTCGAGACAGCCCTCTACCCCACCCA............................................................. 26 0 19 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................CCCTCGAGACAGCCCTCTACCCCACCCA............................................................. 28 0 19 0.05 1 0 1 0 0 0 0
...............................................................................................................AGGTCGATGACGTATTACATGAT..................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................................................................GGTCATGTATTCCAATGAAATTCT......................... 24 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................ATAGGTCGATGACGTATTACATGA...................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................TCTAATTAGTTTCTCAGGGATGACAT.. 26 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................TGATCCATGAGCGTTGCCC...................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................CATGAGCGTTGCCCTGAGAATAATTA.......................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................AGCGTTGCCCTGAGAATAATTA.......................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................CCATGAGCGTTGCCCTGAGCATAATTA.......................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................................................AATTCTAATTAGTTTCTCAGGGATGACAT.. 29 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................................................................................TTATGGTCATGTATTCCAATGAAATTC.......................... 27 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GAAATTCTAATTAGTTTCTCAGGGAT....... 26 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................TAGGTCGATGACGTATTACATGAT..................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................CCGGGAGCGATGCCCTGAGAA................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 1
......................................................................................................................................CCATGGGCGTTGCCCTGAGAATAATTA.......................................................................................... 27 1 20 0.05 1 0 0 0 0 1 0
..........................................................................................................................................GAGCGTTGCCCTGAGAATAATTA.......................................................................................... 23 0 20 0.05 1 0 0 1 0 0 0
...................................................................................................................CGATGACGTATTACATGAT..................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................TAATTAGTTTCTCAGGGATGACATC. 25 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................ATGATCCATGAGCGTTGCCCT..................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................CCCTCGAGACAGCCCTCTACCCCACC............................................................... 26 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................CCCTCGAGACAGCCCTCTACCCCGC................................................................ 25 1 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................CCTCGAGACAGCCCTCTACCCCAC................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GAAATTCTAATTATTTTCTCAGCGAT....... 26 2 20 0.05 1 0 0 0 1 0 0
........................................................................................................................................TTGAGCGTTGCCCTGAGAATAATTA.......................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................CCATGAGTGTTGCCCTGAGAATAATTA.......................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:8475505-8475755 - dan_2503 ACAAGGCATCGGGCTACCATTAT---------GGTGTAACCTCCTGCGAGGGTTGTAAGGTGAGTTTTT--CTTGAA---ACTTC--CATTTCCAA-------------------TGTACATATTGTAACCTCTTGCCTAGCTTTATCCAGCTACTGCATAATGTACTAGGTACTCGCAACGGGACTCTTATTAATGGGGAGCTCTGTCGGGAGATGGGGTGGGTTTTTTGCTAATACCAGTACATAAGGTTACTTTAAGATTAATCAAAGAGTCCCT-ACTGTAGC
droBip1 scf7180000394949:17597-17806 + ATCTC---------CATGGTTCA---------CATGTAATCTCCTGCCTAGCT-GTA-GCTTAGTTTTTCTCGG-GCTGC----------------CATAATCGGCCAA-------------------------------------TCCAGCTACTGCATAATGTACTAGATACTTGCAACGGGACTCTTATTAATTTGGAGCTCTGTCGGGAGATGGGGTGGGTTTTT--CTAATACCAGTACATAAGATTACTACAAGACTAATCAAAGAGTCCCT-ACTGAAAC
droKik1 scf7180000302260:88439-88494 - ACAAGGCATCGGGCTACCATTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453808:206893-207018 - GCAGGGCGTCCAGTCGGGAGTGCGTCCATGTCCGTACAACTTCCTCGTAGAATTGG---GTGAGTGCAT--CCTTAAG---TT-------------GC-----------TTCCAATGTTCGTACTCTAA---------------------------------------------------------------------------------------------------------------------------------AGGATACCCCTTTGTCTTCCAGATCCTGC
droEle1 scf7180000491193:5054907-5054996 - AGCCGGCGGCGGGCTTCCATTTT---------GGCGCCTTCACCTGTGAGGGTTGCAAGGTAAGTTGTG--TCCTAA----AATC--CATTGATAA-------------------AATATTGATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------G
droRho1 scf7180000777779:3912-3974 - ACAAGGCATCGGGCTACCATTAT---------GGAGTAACCTCCTGCGAGGGTTGCAAGGTGAGCTCTT--ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302193:4804454-4804512 - ACAAGGCATCGGGCTACCACTAC---------GGCGTAACCTCCTGCGAGGGTTGCAAGGTGAGTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000411192:4661-4764 + CGG----------GACCCATGTC---------AATACTAGCTCTTACGAGATTGGGGGGGTTAGTTGCT--G------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCTACTGACTAACATTACATTAAGAATATTTTTAGAGTCCCTAACTGAAAC
droEug1 scf7180000409711:4775209-4775262 - ACAAGGCATCGGGCTACCATTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:20687332-20687412 - AGCCGGCGGCGGGCTTCCATTTT---------GGCGCCTTCACCTGCGAGGGCTGCAAGGTAAGTTGTG--TCTCAAG--AAATC--CATTGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3l:20773528-20773610 + ACAAGGCATCGGGCTACCACTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGTTTGT------GCAGC----------------TC-----------TTGCAGTATATATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_11:1177472-1177529 + ACAAGGCATCGGGCTACCATTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chr3L_random_267:3052-3111 + ACAAGGCATCGGGCTACCACTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGTTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:20380015-20380095 - AGCCGGCGGCGGGCTTCCACTTT---------GGCGCCTTCACCTGCGAGGGCTGCAAGGTAAGTTGTG--TCTTAAA--AAATC--CATTGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:12594913-12594969 + ACAAGGCCTCCGGCTACCACTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_33:615984-616040 + ACAAGGCCTCCGGCTACCACTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004511:5776888-5776968 - ACAAGGCATCGGGCTATCATTAC---------GGTGTTACCTCCTGCGAAGGTTGCAAGGTGAATTCCA--TTTAAAA----TTATATTTTTAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:20464232-20464308 + ACAAGGCATCGGGCTATCATTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTAAGTTCCC--CCCTCA---CCCTC-----TATCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:8176530-8176586 + ACAAGGCTTCGGGCTATCATTAC---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:12035954-12036055 - ACAAGGCATCGGGCTATCATTAT---------GGTGTAACCTCGTGCGAGGGTTGCAAGGTAAGTTTGTTGCAT-GCAAC----------------ACTGAATGGTCAATTACATTATACACATTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACAAGGCATCGGGCTACCATTAT---------GGTGTAACCTCCTGCGAGGGTTGTAAGGTGAGTTTTT--CTTGAA---ACTTC--CATTTCCAA-------------------TGTACATATTGTAACCTCTTGCCTAGCTTTATCCAGCTACTGCATAATGTACTAGGTACTCGCAACGGGACTCTTATTAATGGGGAGCTCTGTCGGGAGATGGGGTGGGTTTTTTGCTAATACCAGTACATAAGGTTACTTTAAGATTAATCAAAGAGTCCCT-ACTGTAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................TTGTAACCTCTTGCCTAGCTTTATCC..........................................................................................................................................2612.002110000
...............................................................................................................................................................TAATGTACTAGGTACTCGCAACGGGA......................................................................................................26191.322513101010
...............................................................................................................................................................TAATGTACTAGGTACTCGCAACGGGAC.....................................................................................................27191.16221921000
...............................................................................................................................................................TAATGTACTAGGTACTCGCAACGGG.......................................................................................................25191.11211254000
................................................................................ACTTC--CATTTCCAA-------------------TGTACATAT...................................................................................................................................................................2311.001010000
.........................................................................TGAA---ACTTC--CATTTCCAA-------------------TGTACATAT...................................................................................................................................................................2711.001010000
......................................................................................................................ACATATTGTAACCTCTTGCCTAGC.................................................................................................................................................2411.001100000
..............................................................................................................................TAACCTCTTGCCTAGCTTTATCCAGC.......................................................................................................................................2611.001010000
...........................................................................................................................TTGTAACCTCTTGCCTAGCTTTATC...........................................................................................................................................2511.001010000
..........................................................................................................................................................................................TCTTATTAATGGGGAGCTCTGTCGGGA..........................................................................2760.835320000
..........................................................................................................................................................................................TCTTATTAATGGGGAGCTCTGTC..............................................................................2360.503120000
...............................................................................................................................................................TAATGTACTAGGTACTCGCAACGG........................................................................................................24190.479810000
...................................................................................................................................................................................................................................................................GATTAATCAAAGAGTCCCT-ACTGTAGC27200.408600020
..........................................................................................................................................................................................TCTTATTAATGGGGAGCTCTGT...............................................................................2260.332110000
..............................................................................................................................................................................TCGCAACGGGACTCTTATTAATGG.........................................................................................2460.332200000
..........................................................................................................................................................................................TCTTATTAATGGGGAGCTCTGTCGG............................................................................2560.332110000
...........................................................................................................................................................................TACTCGCAACGGGACTCTTATTAATGG.........................................................................................2760.332200000
........................................................................................................................................................TACTGCATAATGTACTAGGTACTCGC.............................................................................................................26190.326231000
.......................................................................................................................................................CTACTGCATAATGTACTAGGTACTCG..............................................................................................................26200.306010023
..................................................................................................................................................................TGTACTAGGTACTCGCAACGGGACTCT..................................................................................................27180.285320000
......................................................................................................................................................................................................................................................................TAATCAAAGAGTCCCT-ACTGTAGC24200.255041000
..............................................................................................................................................................................TCGCAACGGGACTCTTATTAATGGGGA......................................................................................2760.171100000
...............................................................................................................................................................................CGCAACGGGACTCTTATTAATGGGGAGC....................................................................................2860.171100000
................................................................................................................................................................................................TAATGGGGAGCTCTGTCGGGAGA........................................................................2360.171010000
.............................................................................................................................................................................................TATTAATGGGGAGCTCTGTCGGGAGA........................................................................2660.171100000
................................................................................................................................................................................................TAATGGGGAGCTCTGTCGGG...........................................................................2060.171000010
................................................................................................................................................................................................TAATGGGGAGCTCTGTCGGGAGAT.......................................................................2460.171100000
....................................................................................................................................................................................CGGGACTCTTATTAATGGGGAGC....................................................................................2360.171010000
..............................................................................................................................................................................TCGCAACGGGACTCTTATTAATGGGG.......................................................................................2660.171100000
......................................................................................................................................................GCTACTGCATAATGTACTAGGTACTCGC.............................................................................................................28190.163030000
....................................................................................................................................................................TACTAGGTACTCGCAACGGGAC.....................................................................................................22200.153102000
................................................................................................................................................................AATGTACTAGGTACTCGCAACGGGAC.....................................................................................................26200.153300000
...............................................................................................................................................................TAATGTACTAGGTACTCGCAACG.........................................................................................................23190.112110000
...........................................................................................................................................................................................................................................................TACTTTAAGATTAATCAAAGAGTCCC..........26200.102020000
....................................................................................................................................................................................................................................TTGCTAATACCAGTACATAAGGTTAC.................................26200.102020000
................................................................................................................................................................AATGTACTAGGTACTCGCAACGGG.......................................................................................................24200.102110000
....................................................................................................................................................................................................................................................................ATTAATCAAAGAGTCCCT-ACTGTAGC26200.102000002
................................................................................................................................................................................................................................................................TAAGATTAATCAAAGAGTCCCT-ACTGTA..28200.102200000
..................................................................................................................................................................................................................................TTTTGCTAATACCAGTACATAAGGT....................................25200.102110000
.................................................................................................................................................................................................................................................................AAGATTAATCAAAGAGTCCCT-ACTGT...26200.102010010
..............................................................................................................................................................ATAATGTACTAGGTACTCGCAACGGGA......................................................................................................27190.051010000
...........................................................................................................................................................................................................TCTGTCGGGAGATGGGGTGGGTTT............................................................24190.051100000
............................................................................................................................................................GCATAATGTACTAGGTACTCGCAACGG........................................................................................................27190.051000100
...............................................................................................................................................................TAATGTACTAGGTACTCGCAACGGGAT.....................................................................................................27190.051000001
..............................................................................................................................................................ATAATGTACTAGGTACTCGCAACGGGAC.....................................................................................................28190.051000010
...........................................................................................................................................................................................................TCTGTCGGGAGATGGGGTGGGTTTT...........................................................25190.051100000
.............................................................................................................................................................CATAATGTACTAGGTACTCGCAACGG........................................................................................................26190.051100000
...........................................................................................................................................................TGCATAATGTACTAGGTACTCGCAACGG........................................................................................................28190.051010000
..................................................................................................................................................................................................................................................................AGATTAATCAAAGAGTCCCT-ACTGTAGC28200.051010000
..................................................................................................................................................................................................................................TTTTGCTAATACCAGTACATAAGGTTAC.................................28200.051010000
.....................................................................................................................................................AGCTACTGCATAATGTACTAGGTAC.................................................................................................................25200.051010000
........................................................................................................................................................................................................................................TAATACCAGTACATAAGGTTAC.................................22200.051010000
.....................................................................................................................................................................................................................................................................TTAATCAAAGAGTCCCT-ACTGTAGC25200.051100000
................................................................................................................................................................................................................................................................TAAGATTAATCAAAGAGTCCCT-AC......24200.051001000
..................................................................................................................................................................TGTACTAGGTACTCGCAACGGG.......................................................................................................22200.051100000
........................................................................................................................................................................................................................................TAATACCAGTACATAAGGTTACTTT..............................25200.051100000
......................................................................................................................................................................................................................................................................TAATCAAAGAGTCCCT-ACTGT...21200.051000010
...................................................................................................................................................................................................................................TTTGCTAATACCAGTACATAAGGTTAC.................................27200.051010000
........................................................................................................................................................TACTGCATAATGTACTAGGTACTCG..............................................................................................................25200.051010000
........................................................................................................................................................TACTGCATAATGTACTAGGTACTCGA.............................................................................................................26200.051001000
................................................................................................................................................................AATGTACTAGGTACTCGCAACGG........................................................................................................23200.051100000
....................................................................................................................................................................TACTAGGTACTCGCAACGGGACTCT..................................................................................................25200.051100000
................................................................................................................................................................AATGTACTAGGTACTCGCAACGGGA......................................................................................................25200.051100000
.................................................................................................................................................................................................................................................................AAGATTAATCAAAGAGTCCCT-ACTGTAG.28200.051001000
.......................................................................................................................................................CTACTGCATAATGTACTAGGTACTCGTT............................................................................................................28200.051100000
................................................................................................................................................................................................................................TTTTTTGCTAATACCAGTACATAAGGT....................................27200.051100000
....................................................................................................................................................................TACTAGGTACTCGCAACGGGACTCTTA................................................................................................27200.051100000
.....................................................................................................................................................AGCTACTGCATAATGTACTAGGTACTCG..............................................................................................................28200.051100000
................................................................................................................................................................................................................................................................TAAGATTAATCAAAGAGTCCCT-ACTGC...27200.051010000
......................................................................................................................................................................................................................................................................TAATCAAAGAGTCCCT-ACTGTAG.23200.051100000
.................................................................................................................................................................................................................................TTTTTGCTAATACCAGTACATAAGGTTA..................................28200.051100000
...........................................................................................................................................................................................................TCTGTCGGGAGATGGGGTGG................................................................20200.051100000
.................................................................................................................................................................................................................................................................AAGATTAATCAAAGAGTCCCT-ACTGTA..27200.051100000
................................................................................................................................................................................................................................................................TAAGATTAATCAAAGAGTCCCT-ACTGT...27200.051010000
......................................................................................................................................................................................................................................................................TAATCAAAGAGTCCCT-A.......17200.051000100
.................................................................................................................................................................................................................................TTTTTGCTAATACCAGTACATAAGGT....................................26200.051100000
....................................................................................................................................................................TACTAGGTACTCGCAACGGGACTCC..................................................................................................25200.051010000
................................................................................................................................................................................................................................................................TAAGATTAATCAAAGAGTCCCT-ACTGTAG.29200.051100000
droBip1
ATCTC---------CATGGTTCA---------CATGTAATCTCCTGCCTAGCT-GTA-GCTTAGTTTTTCTCGG-GCTGC----------------CATAATCGGCCAA-------------------------------------TCCAGCTACTGCATAATGTACTAGATACTTGCAACGGGACTCTTATTAATTTGGAGCTCTGTCGGGAGATGGGGTGGGTTTTT--CTAATACCAGTACATAAGATTACTACAAGACTAATCAAAGAGTCCCT-ACTGAAACSizeHit CountTotal NormTotal
No Reads
droKik1
ACAAGGCATCGGGCTACCATTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCAGGGCGTCCAGTCGGGAGTGCGTCCATGTCCGTACAACTTCCTCGTAGAATTGG---GTGAGTGCAT--CCTTAAG---TT-------------GC-----------TTCCAATGTTCGTACTCTAA---------------------------------------------------------------------------------------------------------------------------------AGGATACCCCTTTGTCTTCCAGATCCTGCSizeHit CountTotal NormTotal
No Reads
droEle1
AGCCGGCGGCGGGCTTCCATTTT---------GGCGCCTTCACCTGTGAGGGTTGCAAGGTAAGTTGTG--TCCTAA----AATC--CATTGATAA-------------------AATATTGATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
droRho1
ACAAGGCATCGGGCTACCATTAT---------GGAGTAACCTCCTGCGAGGGTTGCAAGGTGAGCTCTT--ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACAAGGCATCGGGCTACCACTAC---------GGCGTAACCTCCTGCGAGGGTTGCAAGGTGAGTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGG----------GACCCATGTC---------AATACTAGCTCTTACGAGATTGGGGGGGTTAGTTGCT--G------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCTACTGACTAACATTACATTAAGAATATTTTTAGAGTCCCTAACTGAAACSizeHit CountTotal NormTotal
No Reads
droEug1
ACAAGGCATCGGGCTACCATTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGCCGGCGGCGGGCTTCCATTTT---------GGCGCCTTCACCTGCGAGGGCTGCAAGGTAAGTTGTG--TCTCAAG--AAATC--CATTGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........CGGGCTTCCATTTT---------GGCG...........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................AGGGCTGCAAGGTATC...............................................................................................................................................................................................................................16200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACAAGGCATCGGGCTACCACTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGTTTGT------GCAGC----------------TC-----------TTGCAGTATATATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ACAAGGCATCGGGCTACCATTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACAAGGCATCGGGCTACCACTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGTTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AGCCGGCGGCGGGCTTCCACTTT---------GGCGCCTTCACCTGCGAGGGCTGCAAGGTAAGTTGTG--TCTTAAA--AAATC--CATTGACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
ACAAGGCCTCCGGCTACCACTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACAAGGCCTCCGGCTACCACTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTGAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ACAAGGCATCGGGCTATCATTAC---------GGTGTTACCTCCTGCGAAGGTTGCAAGGTGAATTCCA--TTTAAAA----TTATATTTTTAGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................CATTAC---------GGTGTTACCTCCTGCGAAGGT..........................................................................................................................................................................................................................................2711.00100001
droVir3
ACAAGGCATCGGGCTATCATTAT---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTAAGTTCCC--CCCTCA---CCCTC-----TATCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
ACAAGGCTTCGGGCTATCATTAC---------GGTGTAACCTCCTGCGAGGGTTGCAAGGTAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACAAGGCATCGGGCTATCATTAT---------GGTGTAACCTCGTGCGAGGGTTGCAAGGTAAGTTTGTTGCAT-GCAAC----------------ACTGAATGGTCAATTACATTATACACATTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:47 AM