ID:

dan_2498

 Coordinate:

scaffold_13337:8473218-8473368 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.1 -19.0 -18.6

Flybase annnotation

CDS [Dana\GF24303-cds]; exon [dana_GLEANR_9036:4]; intron [Dana\GF24303-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGACTGTGAGTACCAAAAAAAAATCTATCCAACCTAGCAGTATGATTAAGCCAATTCGCAAATGCCAAGTTAAGCCAACCTGGCCAACTAACTGGGCCCAAAGTGAAGGGGAGGCTGCACCTTTCGGCTTGGCCCCTTGATAACTTTATTAGCCGCGAAACCGCTGGCAGATTTCTGCCAAAAGATCGCAGATTGTGTCAGTTAGT
********************************************************************...........................((..(((((....(((.(((((.((((...))))....))))).))).....)))))..))...******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body		 V106
head
 V055
head
.....................................................................................................................................................................................TTGATAACTTTATTAGCCGCGAAACC............................................ 26 0 1 48.00 48 44 4 0 0 0 0
....................................................................TCTATCCAACCTAGCAGTATGATTAAGC........................................................................................................................................................... 28 0 1 28.00 28 25 3 0 0 0 0
...................................................................................................TTCGCAAATGCCAAGTTAAGCCAACC.............................................................................................................................. 26 0 1 20.00 20 18 1 1 0 0 0
....................................................................TCTATCCAACCTAGCAGTATGATTAAGCC.......................................................................................................................................................... 29 0 1 16.00 16 15 1 0 0 0 0
.....................................................................................................................................TAACTGGGCCCAAAGTGAAGGGGAGG............................................................................................ 26 0 1 13.00 13 6 5 1 1 0 0
.....................................................................................................................................................................................TTGATAACTTTATTAGCCGCGAAAC............................................. 25 0 1 11.00 11 8 3 0 0 0 0
.............................................................................................................................................CCCAAAGTGTAACGGAGGC........................................................................................... 19 3 18 10.61 191 0 56 0 86 31 18
..............................................................................................GCCAATTCGCAAATGCCAAGTTAAGCC.................................................................................................................................. 27 0 1 10.00 10 9 1 0 0 0 0
...................................................................................................TTCGCAAATGCCAAGTTAAGCCAACCTG............................................................................................................................ 28 0 1 10.00 10 1 9 0 0 0 0
.................................................................................................AATTCGCAAATGCCAAGTTAAGCCAACC.............................................................................................................................. 28 0 1 7.00 7 5 2 0 0 0 0
.....................................................................................................................................................................................TTGATAACTTTATTAGCCGCGAAACCGC.......................................... 28 0 1 6.00 6 4 2 0 0 0 0
.....................................................................................................................................................................................TTGATAACTTTATTAGCCGCGAAA.............................................. 24 0 1 6.00 6 1 5 0 0 0 0
...................................................................................................TTCGCAAATGCCAAGTTAAGCCAACCT............................................................................................................................. 27 0 1 6.00 6 6 0 0 0 0 0
.....................................................................................................................................TAACTGGGCCCAAAGTGAAGGGGA.............................................................................................. 24 0 1 5.00 5 1 4 0 0 0 0
.....................................................................................................................................TAACTGGGCCCAAAGTGAAGGGG............................................................................................... 23 0 1 5.00 5 3 0 2 0 0 0
...................................................................................................TGCGCAAATGCCAAGTTAAGCCAACC.............................................................................................................................. 26 1 1 5.00 5 5 0 0 0 0 0
.....................................................................................................................................................................................TTGATAACTTTATTAGCCGCGAAACCG........................................... 27 0 1 5.00 5 0 5 0 0 0 0
...................................................................................................TTCGCAAATGCCAAGTTAAGCCAAC............................................................................................................................... 25 0 1 5.00 5 2 3 0 0 0 0
.....................................................................................................................................................................................TGGATAACTTTATTAGCCGCGAAACC............................................ 26 1 1 4.00 4 4 0 0 0 0 0
.....................................................................................................................................TAACTGGGCCCAAAGTGAAGGGGAGGC........................................................................................... 27 0 1 4.00 4 2 2 0 0 0 0
....................................................................................................TCGCAAATGCCAAGTTAAGCCAACC.............................................................................................................................. 25 0 1 4.00 4 0 3 1 0 0 0
.................................................................................................AATTCGCAAATGCCAAGTTAAGCC.................................................................................................................................. 24 0 1 4.00 4 3 1 0 0 0 0
...................................................................................................TTCGCAAATGCCAAGTTAAGCCAACCTGG........................................................................................................................... 29 0 1 3.00 3 1 1 1 0 0 0
.........................................................................................................................................TGGGCCCAAAGTGAAGGGGAGGCTGCAC...................................................................................... 28 0 1 3.00 3 3 0 0 0 0 0
................................................................................................CAATTCGCAAATGCCAAGTTAAGCC.................................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0 0
.....................................................................................................................................TAACTGGGCCCAAAGTGAAGGG................................................................................................ 22 0 1 3.00 3 2 1 0 0 0 0
.........................................................................................................................................TGGGCCCAAAGTGAAGGGGAGGCTGC........................................................................................ 26 0 1 3.00 3 2 1 0 0 0 0
................................................................................................................................................................TGCACCTTTCGGCTTGGCCCCTTGATAAC.............................................................. 29 0 1 3.00 3 0 3 0 0 0 0
...............................................................................................CCAATTCGCAAATGCCAAGTTAAGCC.................................................................................................................................. 26 0 1 3.00 3 3 0 0 0 0 0
.....................................................................................................................................................................................TTGATAACTTTATTAGCCGCGAAACCGCT......................................... 29 0 1 2.00 2 1 1 0 0 0 0
.....................................................................................................................................TAACTGGGCCCAAAGTGAAGG................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0
............................................................................................................................................................................................................................TGCCAAAAGATCGCAGATTGTGTCAGT.... 27 0 1 2.00 2 0 1 1 0 0 0
.....................................................................................................................................................................................TGGTTAACTTTATTAGCCGCGAAACC............................................ 26 2 1 2.00 2 2 0 0 0 0 0
.................................................................................................AATTCGCAAATGCCAAGTTAAGCCAAC............................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0
...................................................................................................TTCGCAAATGCCAAGTTAAGCCAA................................................................................................................................ 24 0 1 2.00 2 0 2 0 0 0 0
...................................................................................................................TAAGCCAACCTGGCCAACTAACTGGGCC............................................................................................................ 28 0 1 2.00 2 2 0 0 0 0 0
...............................................................................................CCAATTCGCAAATGCCAAGTTAAGC................................................................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0
..............TCAAGAAATGCCTTTCCGCTGGCAT.................................................................................................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0
....................................................................TCTATCCAACCTAGCAGTATGATTAAG............................................................................................................................................................ 27 0 1 2.00 2 1 1 0 0 0 0
.............................................................................................................................................CCCAAAGTGTAACGGAGG............................................................................................ 18 3 20 1.30 26 0 0 0 0 16 10
.............TTCAAGAAATGCCTTTCCGCTGGCA..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................ATAACTTTATTAGCCGCGAAAAC............................................ 23 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................GCCTATTCGCAAATGCCAAGTTAAGCC.................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................TAAGCCAAACTGGCCAACTAACTGGGCC............................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0
.........................CTTTCCGCTGGCATGAGCCG.............................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................TAAGCCAACCTGGCCAACTAACTGG............................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................ACTAACTGGGCCCAAAGTGAAGGG................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................TAACTGGGGCCAAAGTGAAGGGGAGG............................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0
.......TGCCGCTTCAAGAAATGCCT................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.........CCGCTTCAAGAAATGCCTTTCCGCTG........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0
CCAGTACTGCCGCTTCAAGAAATGCC................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
....................................................................TCTATCCAACCTAGCAGTATGATTA.............................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
....TACTGCCGCTTCAAGAAATGCCTTTCCG........................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
................................................................................................CAATTCGCAAATGCCAAGTTAAGCCAAC............................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................TTGATAACGTTATTAGCCGCGAAAC............................................. 25 1 1 1.00 1 0 1 0 0 0 0
....TACTGCCGCTTCAAGAAATGCCTGT.............................................................................................................................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................AGCCAACCTGGCCAACTAACTGGGC............................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................TGCACCTTTCGGCTTGCCCCCTTGA.................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................TCGCAAATGCCAAGTTAAGCCAACCTG............................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
............CTTCAAGAAATGCCTTTCCGCTGG....................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................GTCGCAAATGCCAAGTTAAGCCAACC.............................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................................GCCAACCTGGCCAACTAACTGGGCCCA.......................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................GCCCAAAGTGAAGGGGAGGCTGCACC..................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................AACTAACTGGGCCCAAAGTGAAGGGG............................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TTGTTAACTTTATTAGCCGCGAAAC............................................. 25 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................AATCCGCAAATGCCAAGTTAAGCCAACC.............................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................CTTCGCAAATGCCAAGTTAAGCCAACC.............................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................GTCCAACTAACTGGGCCCAAAGTGAAGG................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................CAACCTGGCCAACTAACTGGGCCC........................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
........................................................................TCCAACCTAGCAGTATGATTAAGCC.......................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................TGGGCCCAAAGTGAAGGGGAGG............................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................CAACTAACTGGGCCCAAAGTGAAGG................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................CCAAAGTGAAGGGGAGGCTGCACC..................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..........CGCTTCAAGAAATGCCTTTCCGCTG........................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
...........GCTTCAAGAAATGCCTTTCCGCTGGC...................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
.....ACTGCCGCTTCAAGAAATGCCTTTCCGC.......................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................TAACTGGGCCCAAAGTGAAGCGGAGG............................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................CCTTTCGGGTTGGCCCCTTGATAACT............................................................. 26 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................TTTGCAAATGCCAAGTTAAGCCAACC.............................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................GCAGATTTCTGCCAACAGATCGCAGAT............. 27 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................................................................................................................TAACTTTATTAGCCGCGAAACCGCT......................................... 25 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................AACTAACTGGGCCCAAAGTGACGGG................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................TGGGCCCAAAGTGAAGGGGAGGC........................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................GGCCCAAAGTGAAGGGGAGGCTGCA....................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................GCCCAAAGTGAAGGGGAGGCTGCAC...................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
....................................................................CCTATCCAACCTAGCAGTATGATTAAG............................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0
............................................................................ACCTAGCAATATGATTAAGCCAATTCGC................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TTCATAACTTTATTAGCCGCGAAAC............................................. 25 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................TGCACCTTTCGGCTTGGCCCCTTG................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................TAAGCCAACCTGGCCAACTAATTGGG.............................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................TAATTGGGCCCAAAGTGAAGGGGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................TGGATAACTTTATTAGCCGCGAAAC............................................. 25 1 1 1.00 1 1 0 0 0 0 0
..............................CGCTGGCATGAGCCGCGACTGTGA..................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................TTCGGCTTGGCCCCTTGATAACTTTATTA....................................................... 29 0 1 1.00 1 1 0 0 0 0 0
..............................................................................CTAGCAGTATGATTAAGCC.......................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...GTACTGCCGCTTCAAGAAATGCCTT............................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................AAATGCCAAGTTAAGCCAACC.............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................ATGCCAAAAGATCGCAGATTGTGTCAGT.... 28 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TTGATAACTTTATTAGCCGCGCAACC............................................ 26 1 1 1.00 1 1 0 0 0 0 0
....................................................................TTTATCCAACCTAGCAGTATGATTAAGC........................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
................................................................................................CAATTCGCAAATGCCAAGTTAAGCCAACC.............................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................GGCAATTCGCAAATGCCAAGTTAAGC................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
..............TCAAGAAATGCCTTTCCGCTGGCA..................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................TGGCTCCTTGATAACTTTATTAGCCGCG................................................. 28 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................................TTAAGCCAACCTGGCCAACTAACTGG............................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................GCAAATGCCAAGTTAAGCCAACCTG............................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
..............................................GACTGTGAGTACCAAAAAAAAAT...................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
.................................TGGCATGAGCCGCGACTGTGA..................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................TTTCGGCTTGGCCCCTTGATAACTTTAT......................................................... 28 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TTGATAACTTTATTAGCCGCAAAACC............................................ 26 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................AACTAACTGGGCCCAAAGTGAAGGG................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
....TACTGCCGCTTCAAGAAATGCCTTTCCGC.......................................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................CCAACCTGGCCAACTAACTGGGCCC........................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................GCCAACCTGGCCAACTAACTGGGCCC........................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................AATTCGCAAATGCCAAGTTAAGCCAA................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................AACTAACTGGGCCCAAAGTGAAGGGGA.............................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................TTTATCCAACCTAGCAGTATGATTAAGCC.......................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
....................................................................TCTATCCAACATAGCAGTATGATTAAGCC.......................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................ACTAACTGGGCCCAAAGTGAAGGGGA.............................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................TGCACCTTTCGGCTTGGCCC....................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................GCCAATTCGCAAATGCCAAGTTAAG.................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................CTAACTGGGCCCAAAGTGAAGGGGAGGC........................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
.......TGCCGCTTGAAGAAATGCCTTTCCG........................................................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TTGATAACTTTATTAGCCGCGAAAA............................................. 25 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................TATTAGCCGCGAAACCGCTGG....................................... 21 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................TGGGCCCAAAGTGAAGGGGAGGCTG......................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TTGTTAACTTTATTAGCCGCGAAACC............................................ 26 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................CCCTAAGTGAAGGGGAGGCTGCAC...................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................TTGATAACTTTATTAGCCGCGAAAGC............................................ 26 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................CCCAAAGTGTAAGGGAGGC........................................................................................... 19 2 2 1.00 2 0 0 0 2 0 0
.....................................................................................................................................................................................TTGATAACTTTATTATCCGCGAAAC............................................. 25 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................CTGCACCTTTCGGCTTGGCCC....................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.................................TGGCATGAGCCGCGACTGTGAGTA.................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TTGATAACTTTATTATCCGCGAAACC............................................ 26 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................TGCCAAAAGATCGCAGATTGTGTCAG..... 26 0 1 1.00 1 0 1 0 0 0 0
....................................................................TCTATCCAACCTAGCAGTATGATTAA............................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................GCCAATTCGCAAATGCCAAGTTAAGC................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................CTTGATAACTTTATTAGCCGCGAAACC............................................ 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................TCTATCCAACCTCGCAGTATTATTAAGCC.......................................................................................................................................................... 29 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................TAACTGGGACCAAAGTGAAGGGGAGGC........................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TTCTTAACTTTATTAGCCGCGAAACC............................................ 26 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................CCAAAGTGAAGGGGAGGCTGCACCT.................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................TAATTGGGCCCAAAGTGAAGGGG............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................AACCTGGCCAACTAACTGGGCCC........................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.................................TGGCATGAGCCGCGACTGTGAGTACCAA.............................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................TTGGCCCAAAGTGAAGGGGA.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................AGCCAACCCGGCCAACTAACTGGGC............................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................AAGATCGCAGATTGTGTCAGTTAGT 25 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................AATTCGCAAATGCCAAGTTAAGCCA................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TTCATAACTTTATTAGCCGCGAAACC............................................ 26 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGCGCAAATGCCAAGTTAAGCCAACCT............................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
......................TGCCTTTCCGCTGGCATGAGCCG.............................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................GCCCAAAGTGAAGGGGAGGCTGCACCT.................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................TGGGCCCAAAGTGAAGGGGAGGCT.......................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................CTGGCCCAAAGTGAAGGGGAGGCTT......................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................TAACTGGGGCCAAAGTGAAGGAGAGG............................................................................................ 26 2 1 1.00 1 0 1 0 0 0 0
...................................................................................................................TAAGCCAACCTGGCCAACTAAC.................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.......TGCCGCTTCAAGAAATGCCTTTCCGC.......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................ACTGGGCCCAAAGTGAAGGGGAGG............................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................TTCGCAAATGCCCAGTTAAGCCAACC.............................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
...............CAAGAAATGCCTTTCCGCTGGCATGG.................................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
......................................TGAGCCGCGACTGTGAGTACCAAA............................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................TAACTCGGCCCAAAGAGAAGGGGAC............................................................................................. 25 3 1 1.00 1 0 0 1 0 0 0
.................................................................................................AATACGCAAATGCCAAGTTAAGCCAACC.............................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................AATTCGCAAATGCCAAGTTAAGCCAACCT............................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
......................TGCCTTTCCGCTGGCATGAGCCGCGAC.......................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................TGCACCTTTCGGCTTGGCCCCTTGAT................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................TTGATAACTTTATTAGCCGCGAACCC............................................ 26 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................TAACTTGGCCCAAAGTGAAGGGGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................TAACTGGGCCCAAAGTGAAG.................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................GGCAATTCGCAAATGCCAAGTTAAGCC.................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
....................................................................TCTATCCAACCTAGCAGTATGATGAA............................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................TGCACCTTTCGGCTTGGCCCCT..................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................TTCACCTTTCGGCTTGGCCCCTTGAC................................................................. 26 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................................CCAACTAACTGGGCCCAAAGTGAAGGGGA.............................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
........GCCGCTTCAAGAAATGCCTTTCCGC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................TAACTGGGCCCAAAGTGAAGGGGAG............................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................AAGGGATGGGGAGGCAGCACCTT................................................................................... 23 3 2 0.50 1 0 0 0 0 0 1
...................................GCATGCGGCGCGACTGAGAG.................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0
.............................................................................................................................................TCCTAAGTGAAGGGGAGG............................................................................................ 18 2 5 0.20 1 0 0 0 0 0 1
.........................................................................................................................................TGGGCCCAAAGTGAAGAA................................................................................................ 18 2 13 0.08 1 1 0 0 0 0 0
............................................................................................................................................TCCCAAAGTGTAAGGGAGG............................................................................................ 19 3 16 0.06 1 0 0 0 1 0 0
......................................................................................................................GCTAAACTGGCCACCTAAC.................................................................................................................. 19 3 19 0.05 1 1 0 0 0 0 0
.................................................................TAAACGATCCAACCTAGCA....................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
.............................................................................................................................................CCCAAAGTGTACCGGAGGC........................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GGTCATGACGGCGAAGTTCTTTACGGAAAGGCGACCGTACTCGGCGCTGACACTCATGGTTTTTTTTTAGATAGGTTGGATCGTCATACTAATTCGGTTAAGCGTTTACGGTTCAATTCGGTTGGACCGGTTGATTGACCCGGGTTTCACTTCCCCTCCGACGTGGAAAGCCGAACCGGGGAACTATTGAAATAATCGGCGCTTTGGCGACCGTCTAAAGACGGTTTTCTAGCGTCTAACACAGTCAATCA
********************************************************************************************...........................((..(((((....(((.(((((.((((...))))....))))).))).....)))))..))...******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body		 V055
head
 V106
head
........................................................................................................................................................................AGCCGAACCGGGGAACTATTGAA............................................................ 23 0 1 9.00 9 7 1 0 1 0 0
....................................................................................................................................................................GGAAAGCCGAACCGGGGAACTATTGAA............................................................ 27 0 1 6.00 6 6 0 0 0 0 0
...........................................................................................................................................CCGGGTTTCACTTCCCCTCCGACGT....................................................................................... 25 0 1 6.00 6 0 6 0 0 0 0
............................................................................................................................................CGGGTTTCACTTCCCCTCCGACGT....................................................................................... 24 0 1 4.00 4 0 3 1 0 0 0
...CATGACGGCGAAGTTCTTTAC................................................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0
..........................................................................................................................................CCCGGGTTTCACTTCCCCTCCGACGT....................................................................................... 26 0 1 3.00 3 0 3 0 0 0 0
........................................................................................................................................................................AGCCGAACCGGGGAACTATTGA............................................................. 22 0 1 3.00 3 3 0 0 0 0 0
...............................CGACCGTACTCGGCGCTGACACT..................................................................................................................................................................................................... 23 0 1 2.00 2 0 1 1 0 0 0
.........................................................................................................................................................................GCCGAACCGGGGAACTATTGAA............................................................ 22 0 1 2.00 2 2 0 0 0 0 0
............................AGGCGACCGTACTCGGCGCTGACAC...................................................................................................................................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0
............................................................................................................................................CGGGTTTCACTTCCCCTCCGACTT....................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0
......................................................................................................CGTTTACGGTTCAATTCGGTTTG.............................................................................................................................. 23 1 1 2.00 2 0 2 0 0 0 0
.GTCATGACGGCGAAGTTCTTTAC................................................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................................TGACCCGGGTTTCACTTCCCCTCCGACGT....................................................................................... 29 0 1 2.00 2 2 0 0 0 0 0
GGTCATGACGGCGAAGTTCTTTAC................................................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................................AAAGCCGAACCGGGGAACTATTGAA............................................................ 25 0 1 2.00 2 1 1 0 0 0 0
...............................CGACCGTACTCGGCGCTGACACTCAT.................................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................................................................................................CGAACCGGGGAACTATTGAA............................................................ 20 0 1 2.00 2 0 2 0 0 0 0
..............................................................................................................................................................CGAGGTGGAGCGCCGAACCG......................................................................... 20 3 6 1.50 9 0 7 0 0 1 1
.......................................................ATGGTTTTTTTTTAGATAGGTTG............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................ACCGGGTTTCACTTCCCCTCCGACGT....................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
...CATGACGGCGAAGTTCTTTACGGAA............................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................GACCCGGGTTTCACTTCCCCTCCGACTT....................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0
.................................................................................CGTCATACTAATTCGGTTAAGCGTGT................................................................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................CCGAACCGGGGAACTATTGAAAT.......................................................... 23 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................CTTTGGCGACCGTCTAAAGACGGTTT........................ 26 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................GGAAAGCCGAACCGGGGAGCTATTGAA............................................................ 27 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................TGATTGACCCGGGCTTCACTTCCC................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
.....................................................TCATGGTTTTTTTTTAGATAGGTGG............................................................................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
.......................CGGAAAGGCGACCGTACTCGGCG............................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
GGTCATGACGGCGAAGTTCTTTACGG................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................CGGGGAACTATTGAAATAATCGGC................................................... 24 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................................................................................................TTCTAGCGTCTAACACAGTCAATCA 25 0 1 1.00 1 1 0 0 0 0 0
.......................CGGAAAGGCGACCGTACTCGGCGCTGAC........................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
........................................................TGGTTTTTTTTTAGATAGGTTG............................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0
GGTCATGACGGCGCAGTTCTTT..................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................CGTTTACGGTTCAATTCGGTT................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................TAAGCGTTTACGGTTCAATTCGGTT................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................CCGAACCGGGGACCTATTGAA............................................................ 21 1 1 1.00 1 0 1 0 0 0 0
.............................................................................GGATCGTCATACTAATTCGGTTAAGCG................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................CGGTTAAGCGTTTACGGTTCAATTC.................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................ATACTAATTCGGTTAAGCGTTTAC.............................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................GATTGACCCGGGTTTCACTTCC................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.................................................................................CGTCATACTAATTCGGTTAAGCGTTTA............................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
......GACGGCGAAGTTCTTTACGGAAAA............................................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
GGTCATGACGGCGAAGTT......................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
................................................................................................GTTAAGCGTTTACGGTTCAATTCGGTT................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................GAAAGCCGAACCGGGGAACTATTGAA............................................................ 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................GACCCGGGTTTCACTTCCGCTCCGACG........................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................CCCGGGTTTCACTTCCCCTCCGACTT....................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................GACCCGGGTTTCACTTCCCCTCCGACGT....................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.....................................................TCATGGTTTTTTTTTAGATAGGTTG............................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.......................CGGAAAGGCGACCGTACTCGGCGC............................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0
GCTCATGACGGCGAAGTTCTTTACG.................................................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................CGAACCGGGGAACTATTGAAATAAT....................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................TCGGGTTTCACTTCCCCTCCGACGT....................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.........................................................................GGTTGGATCGTCATACTAATTCGGT......................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...........CGAAGTTCTTTACGGAAAGGCGACCGTAC................................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0
....ATGACGGCGAAGTTCTTTAC................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...........CGAAGTTCTTTACGGAAAGGCGACCGT..................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................CGTCTAAAGACGGTTTTCTAGCGT................ 24 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................GTTTTTCTAGCGTCTAACACAGTCAAT.. 27 1 1 1.00 1 0 0 1 0 0 0
......................................................CATGGTTTTTTTTTAGATAGGTTG............................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
..TCATGACGGCGAAGTTCTTTAC................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................CCGAACCGGGGAACTATTGAA............................................................ 21 0 1 1.00 1 0 1 0 0 0 0
..................................................................................GTCATACTAATTCGGTTAAGCGTTTAC.............................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................AAGCGTTTACGGTTCAATTCGGTTG............................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...........CTAAGTTCTTTACGGAAAGGCGA......................................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
...........CGAAGTTCTTTACGGAAAGGCGAC........................................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................CGACGTGGAAAGCCGAACCGGGGAACT.................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................CCGGGGAACTATTGAAATAATC...................................................... 22 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................CGGGTTTCACTTCCCCTCCGACG........................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................CCGAACCGGGGAACTATTGGA............................................................ 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................................GACCGGTTGATTGACCCGGGTTTCACT.................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.................................................................................CGTCATACTAATTCGGTTAAGCGTTTAC.............................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................GTTGATTGACCCGGGTTTCACT.................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................CGGTTTTCTAGCGTCTAACACA........ 22 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................TTCCCCTCCGACGTGGGAAGCCGA............................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
............................AGGCGACCGTACTCGGCGCTGACA....................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
........................................................CGGTTTTTTTTTAGATAGGTTG............................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................................GGCTGGTTGGCCCGGGTTTCA...................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................GTGGAAAGCCGAACCGGGGAACTATT............................................................... 26 0 1 1.00 1 0 0 1 0 0 0
...................................................................TAGATAGGTTGGATCGTCATACTAATT............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................GTTGATTGACCCGGGTTTCACTTCCCCT.............................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................CCGAGGTGGAGAGCCGAAC........................................................................... 19 2 2 0.50 1 0 1 0 0 0 0
.............................................................................................................................................................CCGAGGTGGAGCGCCGAACCG......................................................................... 21 3 2 0.50 1 0 1 0 0 0 0
..............................................................................................................................................................CGAGGTGGAGCGCCGAACCGG........................................................................ 21 3 3 0.33 1 1 0 0 0 0 0
...............................CGGCCGTAGTCGGCGCTTAC........................................................................................................................................................................................................ 20 3 3 0.33 1 0 0 0 0 1 0
......................................................................................................CGTTAAGGGTTCAATTCG................................................................................................................................... 18 2 6 0.33 2 0 0 0 0 0 2
........................GGAACGGCGACCGTATTCG................................................................................................................................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0
....................................................................................................................................GGTTGGCCCGGGTTTCA...................................................................................................... 17 2 12 0.17 2 0 0 0 0 2 0
.................................................................................................................................GCTGGTTGGCCCGGGTTTC....................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0
...................................................................................................................................................................................................TCGGCCCTTCGGCGACCCTC.................................... 20 3 10 0.10 1 0 0 0 0 1 0
..................................................................................................................................CTGGTTGGCCCGGGTTTCA...................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
..................................................................................................................................................................GTGGAGCGCCGAACCGTGG...................................................................... 19 3 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................................CGAGGTGGAGCGCCGAACC.......................................................................... 19 3 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:8473168-8473418 - dan_2498 CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGACTGTGAGTACCAAAA-AAAA-A--------------------------------------------TCTATCC--AACC-TAGCAGTATGATTA---AGCCAATT-------CG---------CAAATGCCAAGTTAAGCC----AACCTGGCCAACTAACT------------G--GGC--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTT-C--------GGCT-------T-G-G---CCCCTTGATAACTTTATTAGC----CGCGAAAC---CGCTGGCAGATTTC-------TGCCAAAAGATCGCAGATTGTGT--------CAGTT---A-GT
droBip1 scf7180000396541:615005-615266 - CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGACTGTAAGTACCAAAAAATAA-A---------------AAAAAAAAA--------------------ACTATCC--AAAC-TAACAGTATGATTA---AGCCAATT-------CG---------CAAATGCCAAGTTAAGCC----AACTTGGCCAACTAACT------------G--GGC--------CCAAAAGTGAAGGGGA---GGCTGCACC-----------------------TTT-C--------GGCT-------T-A-G---CCCCTTGATAACTTTATTAGC----CGCGAAAC---CGCTGGCAGATTTC-------TGCCAAAAGATCCCAGATTGTGT--------CAGTT---A-GA
droKik1 scf7180000302260:88044-88291 - CCAGTATTGCCGTTTCAAGAAATGCCTTTCAGCTGGCATGAGCCGCGATTGTGAGTACCTAC-CTTTT-ACACAGCCCAGCT----------A------------------------------AGCT-TAGAAATATTATTATTAAGCCAATTCACCATTCC---------CAAATGCCAG------AC-----------------ATTT------------G--GGG--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTT-C--------TGCC-------T-G-G---CCTCTTGATAACTTTATTAGC----CGCGAAAC---CGCTGGCAGATTTC-------TGCCAAAAGATCGCAGATTGTGT--------CAGTT---G-GT
droFic1 scf7180000453929:376122-376388 + CCAGTATTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGATTGTAAGTACTAAG-CCCAA-AC----------TATAGTAAGATATG---------------CCTT-----CAGCAACC-GAGAAATATGATTA---AGCCAGAA-------GG---------CAATTGCCAA------CC-----------------GTTTGAATCGCTGACTCGCAAG--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TCT-T--------TGCT----TTTTCGGT---TCCCCTGATAACTTTATTAGC----TGCGAAAC---CACTGGCAGATTTC-------TGCCAAAAGATCGCAGATTGTGT--------CAGTT---G-GC
droEle1 scf7180000491193:2118173-2118433 - CCAGTACTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGATTGTAAGTACTAAAACCCAA-GC----------C----------ATA---------------CCCTCATACCCGCACTA-AGGAAATATGATTA---AGACAAAA-CCCAAACC---------CAAATGCCAA------CC-----------------GTTT------------G--GGG--------CCA-AAGTGAAGGGAA---GGCTGCACC-----------------------TCT-TGGTTTTT-TACT----TTTT-G-C---CCCCTTGATAACTTTATTAGC----TGCGAAAC---CACTGGCAGATTTC-------TTCCAAGAGATCGCAGATTGTGT--------CAGTT---GTGC
droRho1 scf7180000777779:3523-3770 - CCAGTATTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGATTGTGAGTACTAAA-CCTAA-AC----------T----------ATA---------------CCTT-----CTGCACCCAAAGAAATATGATTA---AGCCAAAA-------CC---------CAAATGCCAA------CC-----------------GTTT------------G--GGG--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TCTCTGGT--TT-TGGT----TTTT-G-C---CCCCTTGATAACTTTATTAGC----TGCGAAAC---CACTGGCAGATTTC-------TGCCAAGAGATCGCAGATTGTGT--------CAGTT---G-GC
droBia1 scf7180000302193:4804065-4804314 - CCAGTACTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGATTGTAAGTACCGAAACCCTA-AC----------T----------TTGCC-------------CCTT-----CTGTAGCC-GAGAAATATGATTA---GGCCAGGT-------CC---------CAAATGCCAG------CC-----------------GTTT------------G--GGG--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTCTC--------GGCTTGGTTTTT-GTG---CCCCTTGATAACTTTATTAGC----TGCGAATC---CACTGGCAGATTTC-------TGCCAACAGATCGCAGATTGTGT--------CAGTT---G-GC
droTak1 scf7180000414337:348090-348358 - CCAGTACTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGATTGTAAGTACCAAAACCTAG-G---------------CTAAACTATA---------------CCTT-----CGGTAGCC-AAGAAATATGATTG---GGCTAC-----CAACCAGTTAACAGCCAAATGCCAA------CC----------------TTTTT------------G--GGG--------CCA-AAGTAAAGGGGA---GGCTGCACC-----------------------TTTTCGGT--TT-TGGT----TTTT-GTTTCACCCCTTGATAACTTTATTAGC----TGTGAAAC---CACTGGCAGATTTC-------TGCCAAAAGATCGCAGATTGTGT--------CAGTT---G-GC
droEug1 scf7180000409711:4774813-4775053 - CCAGTATTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACCAAA-CCTTT-AC----------T----------ATA---------------CCTT-----CTGGAGCC-AAGAAATATGATTA---AGCCAA----------------------AATGCCAG------CC----AACG--------TTTTT------------G--GGG--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTC-T--------AGCT----TTTT-GTG---CCTCTTGATAACTTTATTAGC----TGCGAAAC---CACTGGCAGATTTC-------TGCCAAAAGATTGCAGATTGTGT--------CAGTT---G-GC
dm3 chr3L:21224361-21224602 + CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACTAAA-CCAAA-AC----------T----------AC-----------------------------AGCC-AAGAAATATGATTA---TGCCGAATACCCAATCC-C-------AAAAAGCCAA------CT-----------------GCTT------------G--GGA--------CCA-AAGTGAAGGCGA---GGCTGCACC-----------------------TTG-T------T-CACT----TTTT-GTG---CCCCTTGATAACTTTATTAGC----TGCGAAAC---CGCTGGCAGATTTC-------TGCCAAGCGATCGCAGATTGTGT--------CAGTT---G-AC
droSim2 3l:20773725-20773965 + CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACCAAA-CCTAA-AC----------T----------AC-----------------------------AGCC-AAGAAATATGATTA---TGCCGAATCCCCAATCC---------CAAATGCCAA------CT-----------------GCTT------------G--GGA--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTG-T------T-CGCT----TTTT-GTG---CCCCTTGATAACTTTATTAGC----TGCGAAAC---CGCTGGCAGATTTC-------TGCCAAGCGATCGCAGATTGTGT--------CAGTT---G-GC
droSec2 scaffold_11:1177670-1177892 + CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACCAAA-CCTAA-AC----------T----------AC-----------------------------AGCC-AAGAAATATGAT-------CCGAATCCCCAATCC---------CAAATG-----------------------------------------------------------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTG-T------T-CGCT----TTTT-GTG---CCCCTTGATAACTTTATTAGC----TGCGAAAC---CGCTGGCAGATTTC-------TGCCAAGCGATCGCAGATTGTGT--------CAGTT---G-GT
droYak3 3L:19300796-19301026 - CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACTAAA-CCTAA-AC----------C----------AC-----------------------------AGGC-CAGAAATATGACTA---TGCCAAAT-------CT---------CAAAAGCCAA------CT-----------------GCTT------------G--GGA--------CCA-AAGTGAAGGG------GCTGCACC-----------------------TTT-G------C-CGCT----TTTT-GTG---CCCCTTGATAACTTTATTAGC----TGCAAAAC---CGCTGGCAGATTTC-------TGCCAAGAGATCGCAGATTGTGT--------CAGTT---G-AC
droEre2 scaffold_4784:20908427-20908654 + CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACTAAA-CCTAA-AC----------T----------AC-----------------------------TGGC-AAGAAATATGATTA---TGCCAAAT-------CT---------CAAATGCCAA------CT-----------------G-TT------------G--GGG--------CCA-AAGTGAAGGG------GCTGCACC-----------------------TTG-T--------CGCT----TTTT--TG---CCCCTTGATAACTTTATTAGC----TGCAAAAC---CACTGGCAGATTTC-------TGCCAAGAGATCGCAGATTGTGT--------CAGTT---G-AC
dp5 XR_group6:12595110-12595320 + CCAATATTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGACTGTGAGTACA--A-CCTCTGCC----------T----------CTACCTCTACAGT----------------------------------------------------------------------TACCAA------ATGTTG----------------C------------A--CAA--------ACA-AAGTGAAGGGGA---GGCTGCACC-----------------------TAG-T--------TTCG----TTTT-G-G---CTGCTTGATAACTTTATTAGC----TGCGAAAT---CGCTGAAAAATTTC-------CGCAGAAAGATCGAAGATTATGT--------CAGTT---A-GT
droPer2 scaffold_33:616181-616391 + CCAATATTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGACTGTGAGTACA--A-CCTCTGCC----------T----------CTACCTCTACAGT----------------------------------------------------------------------TACCAA------ATGTTG----------------C------------A--CAA--------ACA-AAGTGAAGGGGA---GGCTGCACC-----------------------TAG-T--------TTCG----TTTT-G-G---CTGCTTGATAACTTTATTAGC----TGCGAAAT---CGCTGCAAAATTTC-------CGCAGAAAGATCGAAGATTATGT--------CAGTT---A-GT
droWil2 scf2_1100000004511:5776678-5776743 - TCAGTATTGCCGCTTCAAGAAATGCCTCTCAGCGGGCATGAGTCGAGACTGTAAGTACATGAA-AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:20464453-20464670 + TCAATATTGCCGCTTCAAGAAATGCCTCTCGGCTGGCATGAGCCGTGACTGTAAGTAGCTCCATCTAG-G--------------------------------------------------------------CTTAAGACTT---TGCCCAAG-------C---------------TGCTG------CT-----------------GTTC------------G--G------------C-AAGTGAATG-GC---GGCTGCACC-----------------------TAG-T--------CGCT----TGTT-GTC---ATCGTGGCCAGCTTTATTAGCCAACTGTTAAAG---CGTTGGCAGATTTTACACTTATGCC----GATCAGAGATTGTGT--------CTGCC---A-AC
droMoj3 scaffold_6680:8176726-8176784 + TCAGTACTGCCGCTTCAAGAAATGCCTCTCGGCTGGCATGAGCCGCGACTGTAAGTACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_8824:9469-9742 - TCAATATTGCCGCTTCAAGAAGTGCCTCTCGGCTGGCATGAGCCGTGACTGTGAGTAATAAT--------T----------T----------AC--------AGTTTATGATT------------------AAG------TA---TGTTGCACT------CT---------CA-------G------CG-----------------AATC------------C--GAGACAAGACCACG-AAGAGAATGG-CGACTGCTGCACCCACAGCTGGACTGCCAATTCAAGTTG-T-----TGTCGCT----G-TT-G-G---CCCATTGATAGCTTTATTGGCCAACTGTGAAACAAGCGTTGCCACATCTTGCACTT-TGCC---CGATTAAAGATTGTGTGTCGTGGCCAGTTGCCA-GT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGACTGTGAGTACCAAAA-AAAA-A--------------------------------------------TCTATCC--AACC-TAGCAGTATGATTA---AGCCAATT-------CG---------CAAATGCCAAGTTAAGCC----AACCTGGCCAACTAACT------------G--GGC--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTT-C--------GGCT-------T-G-G---CCCCTTGATAACTTTATTAGC----CGCGAAAC---CGCTGGCAGATTTC-------TGCCAAAAGATCGCAGATTGTGT--------CAGTT---A-GTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................TTGATAACTTTATTAGC----CGCGAAAC---C...............................................................26148.00484440000
..................................................................................................................TCTATCC--AACC-TAGCAGTATGATTA---AGC...............................................................................................................................................................................................................................................................................28128.00283250000
.......................................................................................................................................................TT-------CG---------CAAATGCCAAGTTAAGCC----AACC..............................................................................................................................................................................................................................26120.00201181000
..................................................................................................................TCTATCC--AACC-TAGCAGTATGATTA---AGCC..............................................................................................................................................................................................................................................................................29116.00161150000
.............................................................................................................................................................................................................TAACT------------G--GGC--------CCA-AAGTGAAGGGGA---GG..................................................................................................................................................................26113.0013561010
...................................................................................................................................................................................................................................................................................................................................TTGATAACTTTATTAGC----CGCGAAAC---................................................................25111.0011380000
..................................................................................................................................................GCCAATT-------CG---------CAAATGCCAAGTTAAGCC----..................................................................................................................................................................................................................................27110.0010190000
.......................................................................................................................................................TT-------CG---------CAAATGCCAAGTTAAGCC----AACCTG............................................................................................................................................................................................................................28110.0010910000
.....................................................................................................................................................AATT-------CG---------CAAATGCCAAGTTAAGCC----AACC..............................................................................................................................................................................................................................2817.007250000
...................................................................................................................................................................................................................................................................................................................................TTGATAACTTTATTAGC----CGCGAAAC---CGC.............................................................2816.006240000
...................................................................................................................................................................................................................................................................................................................................TTGATAACTTTATTAGC----CGCGAAA....................................................................2416.006510000
.......................................................................................................................................................TT-------CG---------CAAATGCCAAGTTAAGCC----AACCT.............................................................................................................................................................................................................................2716.006060000
.............................................................................................................................................................................................................TAACT------------G--GGC--------CCA-AAGTGAAGGGGA---....................................................................................................................................................................2415.005410000
.............................................................................................................................................................................................................TAACT------------G--GGC--------CCA-AAGTGAAGGGG........................................................................................................................................................................2315.005032000
...................................................................................................................................................................................................................................................................................................................................TTGATAACTTTATTAGC----CGCGAAAC---CG..............................................................2715.005500000
.......................................................................................................................................................TT-------CG---------CAAATGCCAAGTTAAGCC----AAC...............................................................................................................................................................................................................................2515.005320000
.............................................................................................................................................................................................................TAACT------------G--GGC--------CCA-AAGTGAAGGGGA---GGC.................................................................................................................................................................2714.004220000
........................................................................................................................................................T-------CG---------CAAATGCCAAGTTAAGCC----AACC..............................................................................................................................................................................................................................2514.004301000
.....................................................................................................................................................AATT-------CG---------CAAATGCCAAGTTAAGCC----..................................................................................................................................................................................................................................2414.004130000
.......................................................................................................................................................TT-------CG---------CAAATGCCAAGTTAAGCC----AACCTGG...........................................................................................................................................................................................................................2913.003111000
.................................................................................................................................................................................................................T------------G--GGC--------CCA-AAGTGAAGGGGA---GGCTGCAC............................................................................................................................................................2813.003030000
....................................................................................................................................................CAATT-------CG---------CAAATGCCAAGTTAAGCC----..................................................................................................................................................................................................................................2513.003030000
.............................................................................................................................................................................................................TAACT------------G--GGC--------CCA-AAGTGAAGGG.........................................................................................................................................................................2213.003120000
.................................................................................................................................................................................................................T------------G--GGC--------CCA-AAGTGAAGGGGA---GGCTGC..............................................................................................................................................................2613.003120000
..................................................................................................................................................................................................................................................................TGCACC-----------------------TTT-C--------GGCT-------T-G-G---CCCCTTGATAAC........................................................................................2913.003300000
...................................................................................................................................................CCAATT-------CG---------CAAATGCCAAGTTAAGCC----..................................................................................................................................................................................................................................2613.003030000
...................................................................................................................................................................................................................................................................................................................................TTGATAACTTTATTAGC----CGCGAAAC---CGCT............................................................2912.002110000
.............................................................................................................................................................................................................TAACT------------G--GGC--------CCA-AAGTGAAGG..........................................................................................................................................................................2112.002200000
........................................................................................................................................................................................................................................................................................................................................................................................TGCCAAAAGATCGCAGATTGTGT--------CAGT........2712.002101000
.....................................................................................................................................................AATT-------CG---------CAAATGCCAAGTTAAGCC----AAC...............................................................................................................................................................................................................................2712.002110000
.......................................................................................................................................................TT-------CG---------CAAATGCCAAGTTAAGCC----AA................................................................................................................................................................................................................................2412.002200000
.......................................................................................................................................................................................TAAGCC----AACCTGGCCAACTAACT------------G--GGC--------C......................................................................................................................................................................................2812.002020000
...................................................................................................................................................CCAATT-------CG---------CAAATGCCAAGTTAAGC.......................................................................................................................................................................................................................................2512.002110000
..............TCAAGAAATGCCTTTCCGCTGGCAT............................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
..................................................................................................................TCTATCC--AACC-TAGCAGTATGATTA---AG................................................................................................................................................................................................................................................................................2712.002110000
.............TTCAAGAAATGCCTTTCCGCTGGCA.............................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........................CTTTCCGCTGGCATGAGCCG......................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.......................................................................................................................................................................................TAAGCC----AACCTGGCCAACTAACT------------G--G.................................................................................................................................................................................................2511.001100000
...........................................................................................................................................................................................................ACTAACT------------G--GGC--------CCA-AAGTGAAGGG.........................................................................................................................................................................2411.001001000
.......TGCCGCTTCAAGAAATGCCT........................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........CCGCTTCAAGAAATGCCTTTCCGCTG................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
CCAGTACTGCCGCTTCAAGAAATGCC.........................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..................................................................................................................TCTATCC--AACC-TAGCAGTATGATTA---..................................................................................................................................................................................................................................................................................2511.001100000
....TACTGCCGCTTCAAGAAATGCCTTTCCG...................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
....................................................................................................................................................CAATT-------CG---------CAAATGCCAAGTTAAGCC----AAC...............................................................................................................................................................................................................................2811.001010000
.........................................................................................................................................................................................AGCC----AACCTGGCCAACTAACT------------G--GGC--------.......................................................................................................................................................................................2511.001010000
........................................................................................................................................................T-------CG---------CAAATGCCAAGTTAAGCC----AACCTG............................................................................................................................................................................................................................2711.001100000
............CTTCAAGAAATGCCTTTCCGCTGG...............................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..........................................................................................................................................................................................GCC----AACCTGGCCAACTAACT------------G--GGC--------CCA-...................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................................GC--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------....................................................................................................................................2611.001010000
..........................................................................................................................................................................................................AACTAACT------------G--GGC--------CCA-AAGTGAAGGGG........................................................................................................................................................................2611.001100000
............................................................................................................................................................................................C----AACCTGGCCAACTAACT------------G--GGC--------CC.....................................................................................................................................................................................2411.001010000
......................................................................................................................TCC--AACC-TAGCAGTATGATTA---AGCC..............................................................................................................................................................................................................................................................................2511.001010000
.................................................................................................................................................................................................................T------------G--GGC--------CCA-AAGTGAAGGGGA---GG..................................................................................................................................................................2211.001010000
.........................................................................................................................................................................................................CAACTAACT------------G--GGC--------CCA-AAGTGAAGG..........................................................................................................................................................................2511.001100000
............................................................................................................................................................................................................................................CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------....................................................................................................................................2411.001010000
..........CGCTTCAAGAAATGCCTTTCCGCTG................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...........GCTTCAAGAAATGCCTTTCCGCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.....ACTGCCGCTTCAAGAAATGCCTTTCCGC..................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.......................................................................................................................................................................................................................................................................................................................................TAACTTTATTAGC----CGCGAAAC---CGCT............................................................2511.001010000
.................................................................................................................................................................................................................T------------G--GGC--------CCA-AAGTGAAGGGGA---GGC.................................................................................................................................................................2311.001001000
.................................................................................................................................................................................................................................GGC--------CCA-AAGTGAAGGGGA---GGCTGCA.............................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................GC--------CCA-AAGTGAAGGGGA---GGCTGCAC............................................................................................................................................................2511.001010000
..................................................................................................................................................................................................................................................................TGCACC-----------------------TTT-C--------GGCT-------T-G-G---CCCCTTG.............................................................................................2411.001100000
..............................CGCTGGCATGAGCCGCGACTGTGA.............................................................................................................................................................................................................................................................................................................................................................................2411.001100000
................................................................................................................................................................................................................................................................................................TT-C--------GGCT-------T-G-G---CCCCTTGATAACTTTATTA.................................................................................2911.001010000
..............................................................................................................................C-TAGCAGTATGATTA---AGCC..............................................................................................................................................................................................................................................................................1911.001010000
...GTACTGCCGCTTCAAGAAATGCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................................................AAATGCCAAGTTAAGCC----AACC..............................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................CAATT-------CG---------CAAATGCCAAGTTAAGCC----AACC..............................................................................................................................................................................................................................2911.001010000
..............TCAAGAAATGCCTTTCCGCTGGCA.............................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......................................................................................................................................................................................TTAAGCC----AACCTGGCCAACTAACT------------G--G.................................................................................................................................................................................................2611.001100000
.................................................................................................................................................................G---------CAAATGCCAAGTTAAGCC----AACCTG............................................................................................................................................................................................................................2511.001100000
..............................................GACTGTGAGTACCAAAA-AAAA-A--------------------------------------------T................................................................................................................................................................................................................................................................................................................2311.001100000
.................................TGGCATGAGCCGCGACTGTGA.............................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................TTT-C--------GGCT-------T-G-G---CCCCTTGATAACTTTAT...................................................................................2811.001100000
..........................................................................................................................................................................................................AACTAACT------------G--GGC--------CCA-AAGTGAAGGG.........................................................................................................................................................................2511.001100000
....TACTGCCGCTTCAAGAAATGCCTTTCCGC..................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...........................................................................................................................................................................................CC----AACCTGGCCAACTAACT------------G--GGC--------CC.....................................................................................................................................................................................2511.001010000
..........................................................................................................................................................................................GCC----AACCTGGCCAACTAACT------------G--GGC--------CC.....................................................................................................................................................................................2611.001010000
.....................................................................................................................................................AATT-------CG---------CAAATGCCAAGTTAAGCC----AA................................................................................................................................................................................................................................2611.001010000
..........................................................................................................................................................................................................AACTAACT------------G--GGC--------CCA-AAGTGAAGGGGA---....................................................................................................................................................................2711.001010000
...........................................................................................................................................................................................................ACTAACT------------G--GGC--------CCA-AAGTGAAGGGGA---....................................................................................................................................................................2611.001100000
..................................................................................................................................................................................................................................................................TGCACC-----------------------TTT-C--------GGCT-------T-G-G---CCC.................................................................................................2011.001010000
..................................................................................................................................................GCCAATT-------CG---------CAAATGCCAAGTTAAG........................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................................................................................CTAACT------------G--GGC--------CCA-AAGTGAAGGGGA---GGC.................................................................................................................................................................2811.001100000
...................................................................................................................................................................................................................................................................................................................................TTGATAACTTTATTAGC----CGCGAAAA---................................................................2511.001100000
.............................................................................................................................................................................................................................................................................................................................................TATTAGC----CGCGAAAC---CGCTGG..........................................................2111.001100000
.................................................................................................................................................................................................................T------------G--GGC--------CCA-AAGTGAAGGGGA---GGCTG...............................................................................................................................................................2511.001100000
.................................................................................................................................................................................................................................................................CTGCACC-----------------------TTT-C--------GGCT-------T-G-G---CCC.................................................................................................2111.001010000
.................................TGGCATGAGCCGCGACTGTGAGTA..........................................................................................................................................................................................................................................................................................................................................................................2411.001100000
........................................................................................................................................................................................................................................................................................................................................................................................TGCCAAAAGATCGCAGATTGTGT--------CAG.........2611.001100000
..................................................................................................................TCTATCC--AACC-TAGCAGTATGATTA---A.................................................................................................................................................................................................................................................................................2611.001100000
..................................................................................................................................................GCCAATT-------CG---------CAAATGCCAAGTTAAGC.......................................................................................................................................................................................................................................2611.001010000
..................................................................................................................................................................................................................................................................................................................................CTTGATAACTTTATTAGC----CGCGAAAC---C...............................................................2711.001010000
............................................................................................................................................................................................................................................CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------T...................................................................................................................................2511.001010000
.................................................................................................................................................................................................AACCTGGCCAACTAACT------------G--GGC--------CC.....................................................................................................................................................................................2311.001010000
.................................TGGCATGAGCCGCGACTGTGAGTACCAA......................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................AAGATCGCAGATTGTGT--------CAGTT---A-GT2511.001100000
.....................................................................................................................................................AATT-------CG---------CAAATGCCAAGTTAAGCC----A.................................................................................................................................................................................................................................2511.001100000
......................TGCCTTTCCGCTGGCATGAGCCG......................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..................................................................................................................................................................................................................................GC--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------T...................................................................................................................................2711.001010000
.................................................................................................................................................................................................................T------------G--GGC--------CCA-AAGTGAAGGGGA---GGCT................................................................................................................................................................2411.001010000
.......................................................................................................................................................................................TAAGCC----AACCTGGCCAACTAAC..................................................................................................................................................................................................................2211.001010000
.......TGCCGCTTCAAGAAATGCCTTTCCGC..................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...............................................................................................................................................................................................................ACT------------G--GGC--------CCA-AAGTGAAGGGGA---GG..................................................................................................................................................................2411.001010000
...............CAAGAAATGCCTTTCCGCTGGCATGG..........................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
......................................TGAGCCGCGACTGTGAGTACCAAA.....................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.....................................................................................................................................................AATT-------CG---------CAAATGCCAAGTTAAGCC----AACCT.............................................................................................................................................................................................................................2911.001010000
......................TGCCTTTCCGCTGGCATGAGCCGCGAC..................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................................................................TGCACC-----------------------TTT-C--------GGCT-------T-G-G---CCCCTTGAT...........................................................................................2611.001100000
.............................................................................................................................................................................................................TAACT------------G--GGC--------CCA-AAGTGAAG...........................................................................................................................................................................2011.001010000
..................................................................................................................................................................................................................................................................TGCACC-----------------------TTT-C--------GGCT-------T-G-G---CCCCT...............................................................................................2211.001100000
........................................................................................................................................................................................................CCAACTAACT------------G--GGC--------CCA-AAGTGAAGGGGA---....................................................................................................................................................................2911.001010000
........GCCGCTTCAAGAAATGCCTTTCCGC..................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.............................................................................................................................................................................................................TAACT------------G--GGC--------CCA-AAGTGAAGGGGA---G...................................................................................................................................................................2511.001100000
.................................................................................................................................................................................................................T------------G--GGC--------CCA-AAGTGAAGAA.........................................................................................................................................................................18130.081010000
droBip1
CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGACTGTAAGTACCAAAAAATAA-A---------------AAAAAAAAA--------------------ACTATCC--AAAC-TAACAGTATGATTA---AGCCAATT-------CG---------CAAATGCCAAGTTAAGCC----AACTTGGCCAACTAACT------------G--GGC--------CCAAAAGTGAAGGGGA---GGCTGCACC-----------------------TTT-C--------GGCT-------T-A-G---CCCCTTGATAACTTTATTAGC----CGCGAAAC---CGCTGGCAGATTTC-------TGCCAAAAGATCCCAGATTGTGT--------CAGTT---A-GASizeHit CountTotal NormTotal
No Reads
droKik1
CCAGTATTGCCGTTTCAAGAAATGCCTTTCAGCTGGCATGAGCCGCGATTGTGAGTACCTAC-CTTTT-ACACAGCCCAGCT----------A------------------------------AGCT-TAGAAATATTATTATTAAGCCAATTCACCATTCC---------CAAATGCCAG------AC-----------------ATTT------------G--GGG--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTT-C--------TGCC-------T-G-G---CCTCTTGATAACTTTATTAGC----CGCGAAAC---CGCTGGCAGATTTC-------TGCCAAAAGATCGCAGATTGTGT--------CAGTT---G-GTSizeHit CountTotal NormTotal
No Reads
droFic1
CCAGTATTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGATTGTAAGTACTAAG-CCCAA-AC----------TATAGTAAGATATG---------------CCTT-----CAGCAACC-GAGAAATATGATTA---AGCCAGAA-------GG---------CAATTGCCAA------CC-----------------GTTTGAATCGCTGACTCGCAAG--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TCT-T--------TGCT----TTTTCGGT---TCCCCTGATAACTTTATTAGC----TGCGAAAC---CACTGGCAGATTTC-------TGCCAAAAGATCGCAGATTGTGT--------CAGTT---G-GCSizeHit CountTotal NormTotal
No Reads
droEle1
CCAGTACTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGATTGTAAGTACTAAAACCCAA-GC----------C----------ATA---------------CCCTCATACCCGCACTA-AGGAAATATGATTA---AGACAAAA-CCCAAACC---------CAAATGCCAA------CC-----------------GTTT------------G--GGG--------CCA-AAGTGAAGGGAA---GGCTGCACC-----------------------TCT-TGGTTTTT-TACT----TTTT-G-C---CCCCTTGATAACTTTATTAGC----TGCGAAAC---CACTGGCAGATTTC-------TTCCAAGAGATCGCAGATTGTGT--------CAGTT---GTGCSizeHit CountTotal NormTotal
No Reads
droRho1
CCAGTATTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGATTGTGAGTACTAAA-CCTAA-AC----------T----------ATA---------------CCTT-----CTGCACCCAAAGAAATATGATTA---AGCCAAAA-------CC---------CAAATGCCAA------CC-----------------GTTT------------G--GGG--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TCTCTGGT--TT-TGGT----TTTT-G-C---CCCCTTGATAACTTTATTAGC----TGCGAAAC---CACTGGCAGATTTC-------TGCCAAGAGATCGCAGATTGTGT--------CAGTT---G-GCSizeHit CountTotal NormTotal
No Reads
droBia1
CCAGTACTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGATTGTAAGTACCGAAACCCTA-AC----------T----------TTGCC-------------CCTT-----CTGTAGCC-GAGAAATATGATTA---GGCCAGGT-------CC---------CAAATGCCAG------CC-----------------GTTT------------G--GGG--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTCTC--------GGCTTGGTTTTT-GTG---CCCCTTGATAACTTTATTAGC----TGCGAATC---CACTGGCAGATTTC-------TGCCAACAGATCGCAGATTGTGT--------CAGTT---G-GCSizeHit CountTotal NormTotal
No Reads
droTak1
CCAGTACTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGATTGTAAGTACCAAAACCTAG-G---------------CTAAACTATA---------------CCTT-----CGGTAGCC-AAGAAATATGATTG---GGCTAC-----CAACCAGTTAACAGCCAAATGCCAA------CC----------------TTTTT------------G--GGG--------CCA-AAGTAAAGGGGA---GGCTGCACC-----------------------TTTTCGGT--TT-TGGT----TTTT-GTTTCACCCCTTGATAACTTTATTAGC----TGTGAAAC---CACTGGCAGATTTC-------TGCCAAAAGATCGCAGATTGTGT--------CAGTT---G-GCSizeHit CountTotal NormTotal
No Reads
droEug1
CCAGTATTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACCAAA-CCTTT-AC----------T----------ATA---------------CCTT-----CTGGAGCC-AAGAAATATGATTA---AGCCAA----------------------AATGCCAG------CC----AACG--------TTTTT------------G--GGG--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTC-T--------AGCT----TTTT-GTG---CCTCTTGATAACTTTATTAGC----TGCGAAAC---CACTGGCAGATTTC-------TGCCAAAAGATTGCAGATTGTGT--------CAGTT---G-GCSizeHit CountTotal NormTotal
No Reads
dm3
CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACTAAA-CCAAA-AC----------T----------AC-----------------------------AGCC-AAGAAATATGATTA---TGCCGAATACCCAATCC-C-------AAAAAGCCAA------CT-----------------GCTT------------G--GGA--------CCA-AAGTGAAGGCGA---GGCTGCACC-----------------------TTG-T------T-CACT----TTTT-GTG---CCCCTTGATAACTTTATTAGC----TGCGAAAC---CGCTGGCAGATTTC-------TGCCAAGCGATCGCAGATTGTGT--------CAGTT---G-ACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................TGATTA---TGCCGAATACCCAATCC-C-------........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GCCAAGCGATCGCAGACC........................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droSim2
CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACCAAA-CCTAA-AC----------T----------AC-----------------------------AGCC-AAGAAATATGATTA---TGCCGAATCCCCAATCC---------CAAATGCCAA------CT-----------------GCTT------------G--GGA--------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTG-T------T-CGCT----TTTT-GTG---CCCCTTGATAACTTTATTAGC----TGCGAAAC---CGCTGGCAGATTTC-------TGCCAAGCGATCGCAGATTGTGT--------CAGTT---G-GCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACCAAA-CCTAA-AC----------T----------AC-----------------------------AGCC-AAGAAATATGAT-------CCGAATCCCCAATCC---------CAAATG-----------------------------------------------------------CCA-AAGTGAAGGGGA---GGCTGCACC-----------------------TTG-T------T-CGCT----TTTT-GTG---CCCCTTGATAACTTTATTAGC----TGCGAAAC---CGCTGGCAGATTTC-------TGCCAAGCGATCGCAGATTGTGT--------CAGTT---G-GTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................ATGAGCCGCGATTGTAAGTACCAAA-C...................................................................................................................................................................................................................................................................................................................................................................2611.0010001
droYak3
CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACTAAA-CCTAA-AC----------C----------AC-----------------------------AGGC-CAGAAATATGACTA---TGCCAAAT-------CT---------CAAAAGCCAA------CT-----------------GCTT------------G--GGA--------CCA-AAGTGAAGGG------GCTGCACC-----------------------TTT-G------C-CGCT----TTTT-GTG---CCCCTTGATAACTTTATTAGC----TGCAAAAC---CGCTGGCAGATTTC-------TGCCAAGAGATCGCAGATTGTGT--------CAGTT---G-ACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CCAGTACTGCCGCTTCAAGAAATGCCTTTCCGCTGGCATGAGCCGCGATTGTAAGTACTAAA-CCTAA-AC----------T----------AC-----------------------------TGGC-AAGAAATATGATTA---TGCCAAAT-------CT---------CAAATGCCAA------CT-----------------G-TT------------G--GGG--------CCA-AAGTGAAGGG------GCTGCACC-----------------------TTG-T--------CGCT----TTTT--TG---CCCCTTGATAACTTTATTAGC----TGCAAAAC---CACTGGCAGATTTC-------TGCCAAGAGATCGCAGATTGTGT--------CAGTT---G-ACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
CCAATATTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGACTGTGAGTACA--A-CCTCTGCC----------T----------CTACCTCTACAGT----------------------------------------------------------------------TACCAA------ATGTTG----------------C------------A--CAA--------ACA-AAGTGAAGGGGA---GGCTGCACC-----------------------TAG-T--------TTCG----TTTT-G-G---CTGCTTGATAACTTTATTAGC----TGCGAAAT---CGCTGAAAAATTTC-------CGCAGAAAGATCGAAGATTATGT--------CAGTT---A-GTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........GCTTCAAGAAATGCCTCTCCGCTG................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
CCAATATTGCCGCTTCAAGAAATGCCTCTCCGCTGGCATGAGCCGCGACTGTGAGTACA--A-CCTCTGCC----------T----------CTACCTCTACAGT----------------------------------------------------------------------TACCAA------ATGTTG----------------C------------A--CAA--------ACA-AAGTGAAGGGGA---GGCTGCACC-----------------------TAG-T--------TTCG----TTTT-G-G---CTGCTTGATAACTTTATTAGC----TGCGAAAT---CGCTGCAAAATTTC-------CGCAGAAAGATCGAAGATTATGT--------CAGTT---A-GTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCAGTATTGCCGCTTCAAGAAATGCCTCTCAGCGGGCATGAGTCGAGACTGTAAGTACATGAA-AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TCAATATTGCCGCTTCAAGAAATGCCTCTCGGCTGGCATGAGCCGTGACTGTAAGTAGCTCCATCTAG-G--------------------------------------------------------------CTTAAGACTT---TGCCCAAG-------C---------------TGCTG------CT-----------------GTTC------------G--G------------C-AAGTGAATG-GC---GGCTGCACC-----------------------TAG-T--------CGCT----TGTT-GTC---ATCGTGGCCAGCTTTATTAGCCAACTGTTAAAG---CGTTGGCAGATTTTACACTTATGCC----GATCAGAGATTGTGT--------CTGCC---A-ACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TCAGTACTGCCGCTTCAAGAAATGCCTCTCGGCTGGCATGAGCCGCGACTGTAAGTACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCAATATTGCCGCTTCAAGAAGTGCCTCTCGGCTGGCATGAGCCGTGACTGTGAGTAATAAT--------T----------T----------AC--------AGTTTATGATT------------------AAG------TA---TGTTGCACT------CT---------CA-------G------CG-----------------AATC------------C--GAGACAAGACCACG-AAGAGAATGG-CGACTGCTGCACCCACAGCTGGACTGCCAATTCAAGTTG-T-----TGTCGCT----G-TT-G-G---CCCATTGATAGCTTTATTGGCCAACTGTGAAACAAGCGTTGCCACATCTTGCACTT-TGCC---CGATTAAAGATTGTGTGTCGTGGCCAGTTGCCA-GTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:42 AM