dan_2482

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGCCAGCTCCGAGCAGCAACCAAAGAAGACCATGGCGGCCGTGGTGATGGTTAGTAATCCCAGCCAGAGTCAGGAGCAGATTGGCAGCAACAACAACAATAACAACAGCATGCTTAACAACAACCTGATTAACCAGCAGCAGCTGCAGTTGCTGGCGGCAGCTGTTGCCTCGTGTCCCAGTACCAGTACCAGTACCAGTGTAGGTGGTGGTGGTATAGTTAGCGGCCTGACTGGTGGTGCCTGTGGCCAC ************************************************..................(((((((........((((((...................)).)))).........))))))).....(((((((((((.(((...))).)))))))))))...........((((........)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	V105 male body	V039 embryo	M044 female body	V055 head	M058 embryo
...............................................................................................................................................................CAGCTGTTGCCTCGTGTCC.........................................................................	19	0	1	2.00	2	2	0	0	0	0	0
..............CAGCAACCGGAGAAGACCATGC.......................................................................................................................................................................................................................	22	3	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................AGTGTAGGTGGTGGTGGT....................................	18	0	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................GCAGCTGTTGCCTCGTGTCCC........................................................................	21	0	1	1.00	1	1	0	0	0	0	0
............................GACCATGGCGGCCGTGGGGAT..........................................................................................................................................................................................................	21	1	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................AGCTGTTGCCTCGTGTCCCA.......................................................................	20	0	1	1.00	1	0	0	0	1	0	0
......................................................................................................................................................................................................GTGGAGGCGTTGGTGGTATA.................................	20	3	16	0.38	6	3	3	0	0	0	0
.................................................GATTAGTAATTCCAGCCA........................................................................................................................................................................................	18	2	7	0.14	1	0	0	0	0	0	1
.........................................................................................................................................................................................................TAGGTCTTGGTGGTATAATT..............................	20	3	10	0.10	1	0	1	0	0	0	0
................................................................................ATTGGCAGCAGCAACAAC.........................................................................................................................................................	18	1	17	0.06	1	0	0	1	0	0	0
...................................................................................................................................................................................................CCATTGTCGGTGGTGGTG......................................	18	2	20	0.05	1	0	0	0	1	0	0
.......................................................................................................................AACAACCTGGATAACCACC.................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

ACCGGTCGAGGCTCGTCGTTGGTTTCTTCTGGTACCGCCGGCACCACTACCAATCATTAGGGTCGGTCTCAGTCCTCGTCTAACCGTCGTTGTTGTTGTTATTGTTGTCGTACGAATTGTTGTTGGACTAATTGGTCGTCGTCGACGTCAACGACCGCCGTCGACAACGGAGCACAGGGTCATGGTCATGGTCATGGTCACATCCACCACCACCATATCAATCGCCGGACTGACCACCACGGACACCGGTG ************************************************..................(((((((........((((((...................)).)))).........))))))).....(((((((((((.(((...))).)))))))))))...........((((........)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V039 embryo	V106 head	V055 head	M058 embryo	M044 female body
......................................................................................................................GTTGTTGGACCACTTGGTCG.................................................................................................................	20	2	1	1.00	1	1	0	0	0	0
...................CTGTTTCTTCTGGTACCGCCCGC.................................................................................................................................................................................................................	23	3	1	1.00	1	0	1	0	0	0
............................CTGGTACCGAAGGCACCACTAG.........................................................................................................................................................................................................	22	3	4	0.75	3	0	2	1	0	0
..........................................ACCACTACCATTCATCAGG..............................................................................................................................................................................................	19	2	2	0.50	1	0	0	0	0	1
........................................................................................................................................................................................................................................ACCACCACGGACAACGGT.	18	1	2	0.50	1	1	0	0	0	0
.....................................................TCATTAGGTTCGGTCACAG...................................................................................................................................................................................	19	2	2	0.50	1	0	0	0	1	0
.......................................................................................................................................................................................................................................GACCAGCACTGACACCGG..	18	2	9	0.11	1	0	0	1	0	0
.................................................................................................................GGATTGTTGTGGGACTAGT.......................................................................................................................	19	3	10	0.10	1	0	0	1	0	0
..............................................................................................................................................................................................GTCATAGTCAGGTCCACCA..........................................	19	3	17	0.06	1	0	0	0	1	0
.......................................................................................................................................................................................................................................GACCAGCACGGACAACGGT.	19	2	18	0.06	1	0	0	1	0	0
.......................................................................................................................................................................................................................................TACCACCAAGGACACCGG..	18	2	19	0.05	1	0	0	1	0	0
..........................................................................................................................................................................................CAGAGTCATGGTCACACCC..............................................	19	3	20	0.05	1	0	1	0	0	0
.................................ACGGCCGGCTCCACTACC........................................................................................................................................................................................................	18	2	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13337:7665675-7665925 +	dan_2482	TG---GCCAGCTCCGAGCAGCAACCAAAGAAGACCATGGCGGCCGTGGTGATGGTTAGT---AAT------CCCAGCCAGAGTCAGGA------------GC---AG---------------------------------ATTGGCAGCA---ACAACAACAATAACAACAGCATGCTTAACAACAACCTGATTAACCAGCAGCAGCTGCAGTTGCTGGCGGCAGCTG------TTGC------CT---------------------CGTGTCCCAGTACCAGTACCAGTACCAGTGTAGGTGGTGGT---GGT---ATAGTTAGCGGCCTGACTG---------------------GTGGTG---CCTGTGGCCAC
droBip1	scf7180000395543:331919-332184 +		TG---ACCAGCTCCGAGCAGCAACCAAAGAAGACCATGGCTGCCGTGGTGATGGTTAGT---AGT---AATCCCAGCCAGAGTCAGGA------------GC---AGCACGACCA---------G---GGAGCCATCCTGATCGGCAGCA---ACAACAACAATAACAACAGCATGCTTAACAACAACCTGATTAACCAGCAGCAGCTGCAATTGCTGGCGGCAGCTG------TTGC------CT---------------------CGTGTCCCAGTA------------CCAGTGTAGGTGGTGGTGGTGGT---ATAGTTGGTGGCCTAACCG---------------------GTGGCG---CCTGTGGCCAC
droKik1	scf7180000302486:1478737-1478999 -		TG---TCCAGTGGGGAGCAGCAACCAAAGAAGACAATGGCCGCCGTTGTGATGGTTAGT---AAT------CAAAGTCAGGAGCAGCA------------GCAGCAGCATGATCA---------GCAGCCGCAGATCCTGATCAGCAGCA---ACAACAACAATAACAACAGCATGCTGAATAACAATTTGATAAATCAACAGCAGCTGCAACTGCTGGCTGCAGCCG------CCGC------CGCTGTCAGCAATGGCAGCTGTCTGTGCTCCAAT------------------------GGTG------------------GCGGTGTAAATG---------------------GTAGTG---CCTGTGGCCAC
droFic1	scf7180000451564:114397-114646 +		T-------AGTTCGGATCAGCAACCAAAGAAGACAATGGCCGCCGTTGTGATGGTTAGT---AAT------CAAAATCAGAGCCAGGA------------GC---AGCTCGATCA---------A---CCACAAATCCTGATCAA---CA---ACAACAACAATAACAACAGCATGCTCAACAACAATTTAATTAATCAGCAACAGCTGCAACTGTTGGCAGCGGCTG------CCGC------TGCCGTGAGCAATGGCAGCTGTCTGTGTTCCAAT------------------------GGTG------------------GTGGTGTAACTA---------------------GTGGTG---CCTGTGCCCAC
droEle1	scf7180000491193:3222860-3223125 -		GAGCTTGCAGTTCGGAGCAGCAACCAAAGAAGACCATGGCCGCCGTTGTGATGGTTAGT---AAC------CAGAATCAGAGTCAGGA------------GC---CGCACGATCA---------G---CCACAGATCCTGATCAACAACA---ACAACAATAATAACAACAGCATGCTGAACAATAATTTGATTAATCAGCAACAGCTGCAACTGTTGGCAGCAGCCG------CCGC------CGCAGTGAGCAGTGGCAGCTGTTTGTGCTCCAAT------------------------GGTGG------T------GGTGGTGGTGTAACTG---------------------GTGGTG---CCTGTGTCCAC
droRho1	scf7180000777034:59458-59714 -		TG---TGCAGCTCGGAGCAGCAACCAAAGAAGACCATGGCCGCCGTTGTGATGGTTAGT---AAT------CAGAATCAGAGTCAGGA------------GC---AGCACGATCC---------G---CCACAGATCCTGATCAA---CA---ACAACAATAATAACAACAGCATGCTGAACAACAATTTGATTAATCAGCAACAGCTGCAACTGTTGGCAGCAGCAG------CCGC------CGCCGTGGGGAGTGGCAGCTGTTTGTGCTCCAAT------------------------GGTGG------T------G---GTGGTGTAACCG---------------------GTGGTG---CCTGTGTCCAC
droBia1	scf7180000300910:2218092-2218354 +		TG---TCCAGTGCGGAGCAACAACCAAAGAAGACCATGGCCGCTGTTGTGATGGTTAGT---AATCCGAATCCCAATCCGAGTCAGGA------------GC---AGCACGATCA---------G---CCGCAGATCCTAATTAA---TA---ACAACAACAATAACAACAGCATGCTGAACAACAACTTGATTAATCAACAACAGCTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GTTGG------T------G---GTGGCGTAACCG---------------------GTGGTG---CCTGTGTCCAC
droTak1	scf7180000415356:207350-207615 +		TG---TCCAGTGGGGAGCAACAACCAAAGAAGACAATGGCCGCTGTAGTGATGGTTAGT---AAT------CCGAATCAGAGTCAGGA------------GC---AGCACGATCA---------G---CCACAGATCCTGATCAATAACA---ACAACAACAATAACAACAGCATGCTGAACAACAATTTGATTAATCAACAACAGCTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTAG------TG---GTGGTGGTGGTGTAACCG---------------------GCGGTG---CCTGTGTCCAC
droEug1	scf7180000409467:196682-196932 -		TG---TCCAGTGCAGAGCAACAACCAAAGAAGACCATGGCCGCGGTTGTGATGGTTAGT---AAT------CAGAATCCAAGTCAGGA------------GC---AGCATGATCA---------G---TCGCAAATTCTGATCAA---------CAAC---AACAACAATAGCATGCTAAATAATAATTTGATTAATCAGCAACAGTTGCAACTGTTGGCAGCAGCTG------CTGC------CGCCGTGGGCAGTGGCAGCTGTTTGTGCTCCAAT------------------------GGTGG------T------A---GTGGTGTAACCG---------------------GTGGTG---CCTGTGTCCAC
dm3	chr3L:8985361-8985602 -		TG---TCCAGTGCGGAGCAACAACCAAAGAAGACCATGGCCGCTGTTGTGATGGTTAGT---AAT------CCAAACCAGAATCAGGA------------CC---AGCACGATCA---------G---CCCCAGATCCTGATCAA---------CAACAATAATAACAACAGCATGCTGAACAACAATTTGATTAACCAGCAACAGTTGCAACTTTTGGCAGCAGCTG------CTGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTGG------TG------------------------------------------GTGGTG---CCTGTGTCCAC
droSim2	3l:8769697-8769938 -		TG---TCCAGTGCGGAGCAACAACCAAAGAAGACCATGGCAGCTGTTGTGATGGTTAGT---AAT------CCAAACCAGAATCAGGA------------CC---AGCACGATCA---------G---CCCCAGATCCTGATCAA---------CAACAATAATAACAACAGCATGCTGAACAACAATTTGATTAACCAGCAACAGTTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTGG------TG------------------------------------------GTGGTG---CCTGTGTCCAC
droSec2	scaffold_0:1256104-1256345 -		TG---TCCAGTGCGGAGCAACAACCAAAGAAGACCATGGCAGCTGTTGTAATGGTTAGT---AAT------CCAAACCAGAATCAGGA------------CC---AGCACGATCA---------G---CCCCAGATCCTGATCAA---------CAACAATAATAACAACAGCATGCTGAACAACAATTTGATTAACCAGCAACAGTTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTGG------TG------------------------------------------GTGGTG---CCTGTGTCCAC
droYak3	3L:2927719-2927969 +		TG---TCCAGTGTGGAGCAACAACCAAAGAAGACAATGGCTGCAGTTGTGATGGTTAGT---AAT------CCAAGCCAGAATCAGGA------------CC---AGCACGATCA---------G---CCCCAGCTCCTGGTCAA---------CAACAATAATAACAACAGCATGCTGAACAATAATTTGATTAATCAGCAACAGTTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTG------------------GTGGTGTAACTG---------------------GTGGTG---CCTGTGTCCAC
droEre2	scaffold_4784:5054953-5055203 +		TG---ACCAGTGCGGAGCAACAACCAAAGAAGACCATGGCCGCTGTTGTGATGGTTAGT---AAT------CCAAACCAGAATCAGGA------------GC---AGCACGATCA---------G---CCGCAGATCCTGATCAA---------CAACAATAATAACAACAGCATGCTGAACAACAATTTGATTAATCAGCAACAGTTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTG------------------GTGGCGTAACTG---------------------GTGCTG---CCTGCGTCCAC
dp5	XR_group5:422831-423096 -		TG---TCCAGTTCGGAGCAACATCCAAAGAAGACCATGGCCGCCGTGGTGATGGTTAGT---AGT------C------AGAGTCAGGAGTC------GCAAC---ACAGCGATCATCAGCATCCA---CCACAAATTTTAATCAA---------CAACAACAATAACAACAACATACTGAACAACAATTTGATTAACCAGCAACAGCTGCAGTTGCTGGCGGCTGCTG------CCGC------TGCAGTGGGCAGTGGCAGCTGTCTGTGCCCATGT------------------------CCTGG------TGGT---G---GTGGCGGCAGTG---------------------GAGGGG---CCTGCAGCAAC
droPer2	scaffold_67:310151-310416 +		TG---TCCAGTTCGGAGCAACATCCAAAGAAGACCATGGCCGCCGTGGTGATGGTTAGT---AGT------C------AGAGTCAGGAGTC------GCAAC---ACAGCGATCATCAGCATCCA---CCACAAATTTTAATCAA---------CAACAACAATAACAACAACATACTGAACAACAATTTGATTAACCAGCAACAGCTGCAGTTGCTGGCGGCTGCTG------CCGC------TGCAGTGGGCAGTGGCAGCTGTCTGTGCCCATGT------------------------CCTGG------TGGT---G---GTGGCGGCAGTG---------------------GAGGGG---CCTGCAGCAAC
droWil2	scf2_1100000004830:573900-574192 -		GA---GTCAGTGCTGAATCGCAACCAAAGAAGACCATGGCCGCCGTGGTGATGGTTAGT---AAT---------AGTCAGCAACAGGA------------TC---CCAATGATCAGCCGTCTCCG---CCACAGATTCTAATTAA---------CAA---CAATAACAACAATGTGTTGAACAACAATTTAATTAATCAACAGCAATTGCAATTGCTGGCCGCGGCTG------CCGC------TGCTGTCGGCAATGGTAGCTGCCTCTGTCCAGGTGTCGGTGTCGGTGTCGGT------GGTG------------------GTGGTGGTAATGGAGGTAGCAACGGAAGCGGCGGTGTTG---CATGCATCAAC
droVir3	scaffold_13049:16528622-16528908 +	dvi_20187	TA---TCCACTGTCGAGCAGCAACCGAAGAAGACGATGGCCGCTGTGGTAATGGTTAGT---AGT------GCAAATCAAAATG---AATCCGCTCAGCAGC---AGCAACAGCC---------G---CCACAAATTTTAATTAACAACAACAATAACAATAATAACAACAGTATATTGAACAACAATTTGATTAATCATCAGCAGCTGGAAGTCTTAGCAGCTGCTG------CCGCCGCTGCTGCTGTCGGCAATGGCAGCTGTTTGTGTCCTGGT------------------------GATGG------T------AATGACGATGTAATTG------------------CCTGTAGCGCAATCTGTAGCAAT
droMoj3	scaffold_6473:6139682-6139922 +		TA---GCAAC--------AGCAACAACAGCA-GCAATAGTAGCAGCAGTAATATCTG-CAGTAGC----------AACAGCAACAGCA------------GC---AGCAATATTA---------G---CAGCAA--CAGCAGCAG---CAATAGCAGCAGAAATAGTAGTAGCAGTAGCAACAG-------------CAACAACAGTAGCAATAGT-AGCAGCAGTAATATCTGCAGTAGC---AA----------------------------CAGCAACAGCA------ACAGCAGCAGCAACAGC---AGC---AGCAATAGCAGCAACAATA---------------------GCAGCA---GCAGCAGCAAC
droGri2	scaffold_14853:2130702-2130948 -		TA---GCAGTAGCAG--TAGCAGTA-------GCAGTAGCAGTAGCAGTAGCAG----TAACAGT----------AACAGTAGCAGTA------------GC---AGTAAAAATA---------G---CAGTAA--CAGTAGCAG---TAACAGCAACAGTAACAGTAACAGTAACAGTAACAG---TAGC-------AGTAACAGTAGCAGTA----GCAGTAGCAGTAGCAGTAGCAGT---AA----------------------------CAGTAACAGTAACAGTAGCAGTAGCAGTAGCAGTAGCAGT---AACAGTAGCAGTAGCAATA---------------------GCAGTA---ACAGTAGCAGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TG---GCCAGCTCCGAGCAGCAACCAAAGAAGACCATGGCGGCCGTGGTGATGGTTAGT---AAT------CCCAGCCAGAGTCAGGA------------GC---AG---------------------------------ATTGGCAGCA---ACAACAACAATAACAACAGCATGCTTAACAACAACCTGATTAACCAGCAGCAGCTGCAGTTGCTGGCGGCAGCTG------TTGC------CT---------------------CGTGTCCCAGTACCAGTACCAGTACCAGTGTAGGTGGTGGT---GGT---ATAGTTAGCGGCCTGACTG---------------------GTGGTG---CCTGTGGCCAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................................................................CAGCTG------TTGC------CT---------------------CGTGTCC.......................................................................................................	19	1	2.00	2	0	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................................AGTGTAGGTGGTGGT---GGT---............................................................	18	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................GCAGCTG------TTGC------CT---------------------CGTGTCCC......................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................AGCTG------TTGC------CT---------------------CGTGTCCCA.....................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droBip1

TG---ACCAGCTCCGAGCAGCAACCAAAGAAGACCATGGCTGCCGTGGTGATGGTTAGT---AGT---AATCCCAGCCAGAGTCAGGA------------GC---AGCACGACCA---------G---GGAGCCATCCTGATCGGCAGCA---ACAACAACAATAACAACAGCATGCTTAACAACAACCTGATTAACCAGCAGCAGCTGCAATTGCTGGCGGCAGCTG------TTGC------CT---------------------CGTGTCCCAGTA------------CCAGTGTAGGTGGTGGTGGTGGT---ATAGTTGGTGGCCTAACCG---------------------GTGGCG---CCTGTGGCCAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TG---TCCAGTGGGGAGCAGCAACCAAAGAAGACAATGGCCGCCGTTGTGATGGTTAGT---AAT------CAAAGTCAGGAGCAGCA------------GCAGCAGCATGATCA---------GCAGCCGCAGATCCTGATCAGCAGCA---ACAACAACAATAACAACAGCATGCTGAATAACAATTTGATAAATCAACAGCAGCTGCAACTGCTGGCTGCAGCCG------CCGC------CGCTGTCAGCAATGGCAGCTGTCTGTGCTCCAAT------------------------GGTG------------------GCGGTGTAAATG---------------------GTAGTG---CCTGTGGCCAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T-------AGTTCGGATCAGCAACCAAAGAAGACAATGGCCGCCGTTGTGATGGTTAGT---AAT------CAAAATCAGAGCCAGGA------------GC---AGCTCGATCA---------A---CCACAAATCCTGATCAA---CA---ACAACAACAATAACAACAGCATGCTCAACAACAATTTAATTAATCAGCAACAGCTGCAACTGTTGGCAGCGGCTG------CCGC------TGCCGTGAGCAATGGCAGCTGTCTGTGTTCCAAT------------------------GGTG------------------GTGGTGTAACTA---------------------GTGGTG---CCTGTGCCCAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAGCTTGCAGTTCGGAGCAGCAACCAAAGAAGACCATGGCCGCCGTTGTGATGGTTAGT---AAC------CAGAATCAGAGTCAGGA------------GC---CGCACGATCA---------G---CCACAGATCCTGATCAACAACA---ACAACAATAATAACAACAGCATGCTGAACAATAATTTGATTAATCAGCAACAGCTGCAACTGTTGGCAGCAGCCG------CCGC------CGCAGTGAGCAGTGGCAGCTGTTTGTGCTCCAAT------------------------GGTGG------T------GGTGGTGGTGTAACTG---------------------GTGGTG---CCTGTGTCCAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TG---TGCAGCTCGGAGCAGCAACCAAAGAAGACCATGGCCGCCGTTGTGATGGTTAGT---AAT------CAGAATCAGAGTCAGGA------------GC---AGCACGATCC---------G---CCACAGATCCTGATCAA---CA---ACAACAATAATAACAACAGCATGCTGAACAACAATTTGATTAATCAGCAACAGCTGCAACTGTTGGCAGCAGCAG------CCGC------CGCCGTGGGGAGTGGCAGCTGTTTGTGCTCCAAT------------------------GGTGG------T------G---GTGGTGTAACCG---------------------GTGGTG---CCTGTGTCCAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TG---TCCAGTGCGGAGCAACAACCAAAGAAGACCATGGCCGCTGTTGTGATGGTTAGT---AATCCGAATCCCAATCCGAGTCAGGA------------GC---AGCACGATCA---------G---CCGCAGATCCTAATTAA---TA---ACAACAACAATAACAACAGCATGCTGAACAACAACTTGATTAATCAACAACAGCTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GTTGG------T------G---GTGGCGTAACCG---------------------GTGGTG---CCTGTGTCCAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TG---TCCAGTGGGGAGCAACAACCAAAGAAGACAATGGCCGCTGTAGTGATGGTTAGT---AAT------CCGAATCAGAGTCAGGA------------GC---AGCACGATCA---------G---CCACAGATCCTGATCAATAACA---ACAACAACAATAACAACAGCATGCTGAACAACAATTTGATTAATCAACAACAGCTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTAG------TG---GTGGTGGTGGTGTAACCG---------------------GCGGTG---CCTGTGTCCAC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TG---TCCAGTGCAGAGCAACAACCAAAGAAGACCATGGCCGCGGTTGTGATGGTTAGT---AAT------CAGAATCCAAGTCAGGA------------GC---AGCATGATCA---------G---TCGCAAATTCTGATCAA---------CAAC---AACAACAATAGCATGCTAAATAATAATTTGATTAATCAGCAACAGTTGCAACTGTTGGCAGCAGCTG------CTGC------CGCCGTGGGCAGTGGCAGCTGTTTGTGCTCCAAT------------------------GGTGG------T------A---GTGGTGTAACCG---------------------GTGGTG---CCTGTGTCCAC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TG---TCCAGTGCGGAGCAACAACCAAAGAAGACCATGGCCGCTGTTGTGATGGTTAGT---AAT------CCAAACCAGAATCAGGA------------CC---AGCACGATCA---------G---CCCCAGATCCTGATCAA---------CAACAATAATAACAACAGCATGCTGAACAACAATTTGATTAACCAGCAACAGTTGCAACTTTTGGCAGCAGCTG------CTGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTGG------TG------------------------------------------GTGGTG---CCTGTGTCCAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................GAAGACCATGGCCGCTGTTGTGA......................................................................................................................................................................................................................................................................................................................................	23	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TGCGGAGCAACAACCAAAGAAGACCA.....................................................................................................................................................................................................................................................................................................................................................	26	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGACCATGGCCGCTGTTGTGA......................................................................................................................................................................................................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................ACCATGGCCGCTGTTGTGATG....................................................................................................................................................................................................................................................................................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AACCAAAGAAGACCATGGCCGCTGT...........................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GAAGACCATGGCCGCTGTTGTGATGGA..................................................................................................................................................................................................................................................................................................................................	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................TTTGATTAACCAGCAACAGTTGCAAC....................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CGGAGCAACAACCAAAGAAGAC.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGTGCTCCAAT------------------------GGTGG------TG------------------------------------------GTGGGA---...........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACAACCAAAGAAGACCATGGCCGCTGT...........................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GAAGACCATGGCCGCTGTTGT........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAAAGAAGACCATGGCCGCTGT...........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ACCAAAGAAGACCATGGCCG...............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CCATGGCCGCTGTTGTGATGAA..................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TG---TCCAGTGCGGAGCAACAACCAAAGAAGACCATGGCAGCTGTTGTGATGGTTAGT---AAT------CCAAACCAGAATCAGGA------------CC---AGCACGATCA---------G---CCCCAGATCCTGATCAA---------CAACAATAATAACAACAGCATGCTGAACAACAATTTGATTAACCAGCAACAGTTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTGG------TG------------------------------------------GTGGTG---CCTGTGTCCAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........TGCGGAGCAACAACCAAAGAAGACCA.....................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.....................................................GTTAGT---AAT------CCAAACCAGAATCAGGA------------CC---................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
TG---TCCAGTGCGGAGCAAA....................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TGTCTGTGCTCCAAT------------------------GGTGG------T...............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................AAGAAGACCATGGCAGCTGTT..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................TCAGGA------------CC---AGCACGATCA---------G---CCCCAGAT.................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................ACCAAAGAAGACCATGGCAGCTGT...........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................AGTTGCAACTGTTGGCA............................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................AAAGAAGACCATGGCAGCTGTTGTGAT.....................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................TGGCAGCTGTTGTGAT.....................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............GAGCAACAACCAAAGAAGA........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........TGCGGAGCAACAACCAAAGAAGACC......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................AAAGAAGACCATGGCAGCTGTTG.........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................CAACAACCAAAGAAGACCATGGCAGC..............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TG---TCCAGTGCGGAGCAACAACCAAAGAAGACCATGGCAGCTGTTGTAATGGTTAGT---AAT------CCAAACCAGAATCAGGA------------CC---AGCACGATCA---------G---CCCCAGATCCTGATCAA---------CAACAATAATAACAACAGCATGCTGAACAACAATTTGATTAACCAGCAACAGTTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTGG------TG------------------------------------------GTGGTG---CCTGTGTCCAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................................................................................................................................................GTTGGCAGCAGCTG------CCGC------CGCCGTGGGC...........................................................................................................................	28	1	1.00	1	0	1	0	0
.................................................................................................................................CCCAGATCCTGATCAA---------CAACA..........................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.......................CCAAAGAAGACCATGGCAGCTGTTG.........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................GC------CGCCGTGGGCAGTGGCAGCTGTCT.............................................................................................................	26	1	1.00	1	0	0	1	0

droYak3

TG---TCCAGTGTGGAGCAACAACCAAAGAAGACAATGGCTGCAGTTGTGATGGTTAGT---AAT------CCAAGCCAGAATCAGGA------------CC---AGCACGATCA---------G---CCCCAGCTCCTGGTCAA---------CAACAATAATAACAACAGCATGCTGAACAATAATTTGATTAATCAGCAACAGTTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTG------------------GTGGTGTAACTG---------------------GTGGTG---CCTGTGTCCAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................CAATGGCTGCAGTTGTGAT.....................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
...................................ATGGCTGCAGTTGTGATGGTTAGT---A..........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................ATAATAACAACAGCATGCTGAACAA.................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................AACAATAATAACAACAGCATGCT.......................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................ATGGCTGCAGTTGTGATG....................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................GGTTAGT---AAT------CCAAGCCAGAATCAGG..................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................GAACAATAATTTGATTAATC...................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CAATAATAACAACAGCATGCT.......................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................ACAATGGCTGCAGTTGTGATGGAA.................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................AAAGAAGACAATGGCTGCAGTT..........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

TG---ACCAGTGCGGAGCAACAACCAAAGAAGACCATGGCCGCTGTTGTGATGGTTAGT---AAT------CCAAACCAGAATCAGGA------------GC---AGCACGATCA---------G---CCGCAGATCCTGATCAA---------CAACAATAATAACAACAGCATGCTGAACAACAATTTGATTAATCAGCAACAGTTGCAACTGTTGGCAGCAGCTG------CCGC------CGCCGTGGGCAGTGGCAGCTGTCTGTGCTCCAAT------------------------GGTG------------------GTGGCGTAACTG---------------------GTGCTG---CCTGCGTCCAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............AGCAACAACCAAAGAAGACCATGG..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................CAACTGTTGGCAGCAGCTG------C..............................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................AGTTGCAACTGTTGGCAGCAGCTG------CCGC------C....................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTGTGCTCCAAT------------------------GGTG------------------GTGGCGTAAC...........................................	26	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GCCGTGGGCAGTGGCAGCTGTCTGTG..........................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.................................................................................ATCAGGA------------GC---AGCACGATC.......................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
............................................................................CCAGAATCAGGA------------GC---AGCACG..........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................GTGCTCCAAT------------------------GGTG------------------GTGGCGTAACTG---------------------GT..................	28	1	1.00	1	1	0	0	0	0	0	0
.........................................................................AAACCAGAATCAGGA------------GC---AGCACGATC.......................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0

dp5

TG---TCCAGTTCGGAGCAACATCCAAAGAAGACCATGGCCGCCGTGGTGATGGTTAGT---AGT------C------AGAGTCAGGAGTC------GCAAC---ACAGCGATCATCAGCATCCA---CCACAAATTTTAATCAA---------CAACAACAATAACAACAACATACTGAACAACAATTTGATTAACCAGCAACAGCTGCAGTTGCTGGCGGCTGCTG------CCGC------TGCAGTGGGCAGTGGCAGCTGTCTGTGCCCATGT------------------------CCTGG------TGGT---G---GTGGCGGCAGTG---------------------GAGGGG---CCTGCAGCAAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................AACAACAATAACAACAACATACTGAACA..................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................TAACAACAACATACTGAACAACAATT............................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................AATTTTAATCAA---------CAACAAC........................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................ATAACAACAACATACTGAACA..................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................GAAGACCATGGCCGCCGTGGTGATG....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................TGATGGTTAGT---AGT------C------AGAGTCAGG..................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................TGGCCGCCGTGGTGATGGAA.................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0	0	0	0	0

droPer2

TG---TCCAGTTCGGAGCAACATCCAAAGAAGACCATGGCCGCCGTGGTGATGGTTAGT---AGT------C------AGAGTCAGGAGTC------GCAAC---ACAGCGATCATCAGCATCCA---CCACAAATTTTAATCAA---------CAACAACAATAACAACAACATACTGAACAACAATTTGATTAACCAGCAACAGCTGCAGTTGCTGGCGGCTGCTG------CCGC------TGCAGTGGGCAGTGGCAGCTGTCTGTGCCCATGT------------------------CCTGG------TGGT---G---GTGGCGGCAGTG---------------------GAGGGG---CCTGCAGCAAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................C------AGAGTCAGGAGTC------GCAAC---ACAGC...........................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................CAGTTGCTGGCGGCTGCTG------CC.............................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
............................................GTGGTGATGGTTAGT---AGT------C------...........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..............................................GGTGATGGTTAGT---AGT------C------AGA........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
...............................................GTGATGGTTAGT---AGT------C------AG.........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................ATACTGAACAACAATTTGATTAACC...................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GTGGCGGCAGTG---------------------GAGGGG---...........	18	1	1.00	1	0	0	0	0	0	1
..............................................................................AGAGTCAGGAGTC------GCAAC---................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0

droWil2

GA---GTCAGTGCTGAATCGCAACCAAAGAAGACCATGGCCGCCGTGGTGATGGTTAGT---AAT---------AGTCAGCAACAGGA------------TC---CCAATGATCAGCCGTCTCCG---CCACAGATTCTAATTAA---------CAA---CAATAACAACAATGTGTTGAACAACAATTTAATTAATCAACAGCAATTGCAATTGCTGGCCGCGGCTG------CCGC------TGCTGTCGGCAATGGTAGCTGCCTCTGTCCAGGTGTCGGTGTCGGTGTCGGT------GGTG------------------GTGGTGGTAATGGAGGTAGCAACGGAAGCGGCGGTGTTG---CATGCATCAAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................................................................................................................................................................TG------------------GTGGTGGTAATGGAGGTAGCAACGGA...........................	28	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................GTCGGTGTCGGT------GGTG------------------GTGGTGGTA............................................	25	1	1.00	1	0	0	1	0	0
............................................................................................................ATGATCAGCCGTCTCCG---CCAC.....................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................GTAATGGAGGTAGCAACGGA...........................	20	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................AAGCGGCGGTGTTG---CATG.......	18	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................GCTGCCTCTGTCCAGGTGTCGGT.............................................................................................	23	1	1.00	1	1	0	0	0	0
......................ACCAAAGAAGACCATGGCCGCCGT...........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................GTCCAGGTGTCGGTGTCG.........................................................................................	18	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................ATGGAGGTAGCAACGGAAGC........................	20	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................GCGGCTG------CCGC------TGCTGTCGGC...........................................................................................................................	21	1	1.00	1	0	1	0	0	0
.................TCGCAACCAAAGAAGACCATGGC.................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................GGTG------------------GTGGTGGTAATGGAGG.....................................	20	1	1.00	1	0	0	0	1	0
...............................................GTGATGGTTAGT---AAT---------AGTCAG.........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
............................................................................................................................................................................................................................................................................................GTCGGTGTCGGT------GGTG------------------GTGGTGGT.............................................	24	2	0.50	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................GTCGGTGTCGGT------GGTG------------------GT...................................................	18	6	0.17	1	0	0	0	1	0

droVir3

TA---TCCACTGTCGAGCAGCAACCGAAGAAGACGATGGCCGCTGTGGTAATGGTTAGT---AGT------GCAAATCAAAATG---AATCCGCTCAGCAGC---AGCAACAGCC---------G---CCACAAATTTTAATTAACAACAACAATAACAATAATAACAACAGTATATTGAACAACAATTTGATTAATCATCAGCAGCTGGAAGTCTTAGCAGCTGCTG------CCGCCGCTGCTGCTGTCGGCAATGGCAGCTGTTTGTGTCCTGGT------------------------GATGG------T------AATGACGATGTAATTG------------------CCTGTAGCGCAATCTGTAGCAAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................AACCGAAGAAGACGATGGCC................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AACCGAAGAAGACGATGGCCGCTGT...........................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ACCGAAGAAGACGATGGCCGCTGT...........................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GAAGAAGACGATGGCCGCTGT...........................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AGCTGGAAGTCTTAGCAGCT.........................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0
...................GCAACCGAAGAAGACGATGGCC................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GCAACCGAAGAAGACGATGGC.................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GTTTGTGTCCTGGT------------------------GATGG------T------.........................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATGGCCGCTGTGGTAATG....................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AACCGAAGAAGACGATGGCCGCTGTG..........................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GTAATTG------------------CCTGTAGCGCAATCTGT......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GTCCTGGT------------------------GATGG------T------AATGAC...................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AACCGAAGAAGACGATGGCCGCT.............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AAGACGATGGCCGCTGTGGTAATG....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GTGGTAATGGTTAGT---AGT------..................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ACTGTCGAGCAGCAACCGAA.............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AACCGAAGAAGACGATGGCCGC..............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GCTGTTTGTGTCCTGGT------------------------GATGG------T------AA.......................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................TCCTGGT------------------------GATGG------T------AATGAC...................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TCCACTGTCGAGCAGCAACCGAAGAAGACGATGGCCGCTGTGGTAA......................................................................................................................................................................................................................................................................................................................................	46	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATGGCCGCTGTGGTAA......................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................GGCAATGGCAGCTGTTTGTGTCCTGG....................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CCGAAGAAGACGATGGCC................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TA---TCCACTGTCGAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TCCACTGTCGAGCAGCAACCGAAGAA..........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CGAAGAAGACGATGGCCGCTGTG..........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAACCGAAGAAGACGATGGC.................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AGCTGTTTGTGTCCTGGT------------------------GATGG------T------.........................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................GCAGCAACCGAAGAAGACG......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GCAACCGAAGAAGACGATGGCCGCT.............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CGCTCAGCAGC---AGCAACAGCC---------.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................G---AATCCGCTCAGCAGC---AGCA............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CACTGTCGAGCAGCAACCGAA.............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TCATCAGCAGCTGGAAGTCT.................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AGCAACCGAAGAAGACGATGGCCGCT.............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GCAACCGAAGAAGACGATGGCCGCTG............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TGTGGTAATGGTTAGT---AGT------G.................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GAAGAAGACGATGGCCGCTGTGGT........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CGAAGAAGACGATGGCCGCTGTGGTAA......................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGACGATGGCCGCTGTGGTAATG....................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.A---TCCACTGTCGAGCAGCAAC.................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GCTGTTTGTGTCCTGGT------------------------GATG.......................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TAATCATCAGCAGCTGGAA.....................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TG---AATCCGCTCAGCAGC---AGCA............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAACCGAAGAAGACGATGGCCGCTGT...........................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGAGCAGCAACCGAAGAAGACGATGGC.................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................AACAACAACAATAACAATAATAACA.................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TA---GCAAC--------AGCAACAACAGCA-GCAATAGTAGCAGCAGTAATATCTG-CAGTAGC----------AACAGCAACAGCA------------GC---AGCAATATTA---------G---CAGCAA--CAGCAGCAG---CAATAGCAGCAGAAATAGTAGTAGCAGTAGCAACAG-------------CAACAACAGTAGCAATAGT-AGCAGCAGTAATATCTGCAGTAGC---AA----------------------------CAGCAACAGCA------ACAGCAGCAGCAACAGC---AGC---AGCAATAGCAGCAACAATA---------------------GCAGCA---GCAGCAGCAAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAGC---AGC---............................................................	20	20	0.10	2	0	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................................................................CAATA---------------------GCAGCA---GCAGCAGCAAC	22	17	0.06	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................AACAGCA------ACAGCAGCAGC...........................................................................	18	20	0.05	1	1	0	0	0	0	0
................................................................C----------AACAGCAACAGCA------------GC---AGCA............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.A---GCAAC--------AGCAACAACAGCA-GCA......................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................AACAATA---------------------GCAGCA---GCAGCAGCA..	22	20	0.05	1	0	0	0	0	0	1
........AC--------AGCAACAACAGCA-GCA......................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAGC---AGC---A...........................................................	21	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................ACAATA---------------------GCAGCA---GCAGCAGCA..	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CAGCA------ACAGCAGCAGCAACAGC---..................................................................	22	20	0.05	1	0	0	0	0	1	0
...........................................................................AACAGCAACAGCA------------GC---AGCA............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CAGCAGCAACAGC---AGC---AGC.........................................................	19	20	0.05	1	0	0	0	0	1	0

droGri2

TA---GCAGTAGCAG--TAGCAGTA-------GCAGTAGCAGTAGCAGTAGCAG----TAACAGT----------AACAGTAGCAGTA------------GC---AGTAAAAATA---------G---CAGTAA--CAGTAGCAG---TAACAGCAACAGTAACAGTAACAGTAACAGTAACAG---TAGC-------AGTAACAGTAGCAGTA----GCAGTAGCAGTAGCAGTAGCAGT---AA----------------------------CAGTAACAGTAACAGTAGCAGTAGCAGTAGCAGTAGCAGT---AACAGTAGCAGTAGCAATA---------------------GCAGTA---ACAGTAGCAGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................GCAACAGTAACAGTAACA..............................................................................................................................................................................................................	18	20	0.05	1	1	0

dan_2482

scaffold_13337:7665725-7665875 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-36.5	-36.2	-36.1