ID:

dan_2432

 Coordinate:

scaffold_13337:5540865-5541015 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_9932:1]; CDS [Dana\GF25255-cds]; intron [Dana\GF25255-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

-#################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATGGATGTTATGCCAGCTCCATTCTACATTACTTCAATCAAAAATAACGGTAAGTTCAGTGAAGAATTCTTCGAAGAAAAAATATAAATATTAAAAATTAAAATTAGTGACAAATTTTTTTCATTTCCTGAAATCATTTTGAAAAATTTCATCATCTTTTGCCGGCAATTAAATTTTAAAATTTACATTTTTTACATTTACACCAAAAAAATGATTAAAAAAAATGCATAAAAAATCAATTTGCAATTAC
**************************************************.....(((..(((((....)))))..)))(((((.(((((.((((((.((((.....((((......(((((((................))))))).....))))...(((....))))))).)))))).))))).))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
 V105
male body		 V106
head
 V039
embryo
................GCTCCATTCTACATTACTTCAAT.................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
............................................ATAACGGTAAGTTCAGTGAAGAATTCTT................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0
......................TTCTACATTACTTCAATCAAAAATAACG......................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0
.................................................................................................................................TGAAATCATTTTGAAAGAT....................................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0
........TTATGCCAGCTCCATTCTACATTAC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...............AGCTCCATGCTACATTACTTCTAT.................................................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..........ATGCCAGCTCCATTCTACATTACT......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................TGAGATCATTTTGAAAGATT...................................................................................................... 20 2 4 0.75 3 1 0 0 2 0 0
.................................................................................................................................TGAGATCATTTTGAAAGATGTC.................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0
.............................ATACTTCAATCAAAAATGACC......................................................................................................................................................................................................... 21 3 6 0.17 1 0 1 0 0 0 0
.................................................................................................................................TGAAATCATTTTGAAAGATG...................................................................................................... 20 2 7 0.14 1 0 0 1 0 0 0
.................................................................................................................................TGACATCATTTTGAAAACT....................................................................................................... 19 2 9 0.11 1 0 0 0 0 0 1
.................................................................................................................................TGAGATCATTTTGAAAGATTG..................................................................................................... 21 3 9 0.11 1 0 0 1 0 0 0
...............................ACTTCAATCAAAAATGACCGA....................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 1 0 0
..............................................................................................................................................................................................TGTTTCATTTACACCAAA........................................... 18 2 16 0.06 1 0 0 0 0 0 1
..............................................................................................................................................................................................TTTAACATCTACTCCAAAAAA........................................ 21 3 17 0.06 1 0 1 0 0 0 0
....................................................................................................................................................................................................ATTTACACCAAAAAGCTG..................................... 18 2 20 0.05 1 0 0 0 0 0 1
.................................................................................................................................TGAAATCATTTTGAAAACTTAT.................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

TTACCTACAATACGGTCGAGGTAAGATGTAATGAAGTTAGTTTTTATTGCCATTCAAGTCACTTCTTAAGAAGCTTCTTTTTTATATTTATAATTTTTAATTTTAATCACTGTTTAAAAAAAGTAAAGGACTTTAGTAAAACTTTTTAAAGTAGTAGAAAACGGCCGTTAATTTAAAATTTTAAATGTAAAAAATGTAAATGTGGTTTTTTTACTAATTTTTTTTACGTATTTTTTAGTTAAACGTTAATG
**************************************************.....(((..(((((....)))))..)))(((((.(((((.((((((.((((.....((((......(((((((................))))))).....))))...(((....))))))).)))))).))))).))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
.............................................................................................................................AAAGACTGTAGTAAAACTTTTT........................................................................................................ 22 2 2 0.50 1 1 0
...........................................................................................................................................................................TTTAAAATTTTAAATGTAA............................................................. 19 0 3 0.33 1 1 0
......ACAACACGGTCGAGGTAA................................................................................................................................................................................................................................... 18 1 3 0.33 1 1 0
.................GAGGTATGAAGAAATGAAGTT..................................................................................................................................................................................................................... 21 3 8 0.13 1 0 1
....CCACAACATGGTCGAGGTAA................................................................................................................................................................................................................................... 20 3 10 0.10 1 1 0
.................................................................................................................................................................................................................................ACCCATTTTTTAGTTAAA........ 18 2 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:5540815-5541065 + dan_2432 AATGGATGTTATGCCA-GCT---CCAT---TCTACATTA---------CTTCAATCAAAAATAACGGTAAGTTCAGTGA-A-GAATT-CTTCGA----------------AGAAAAAATAT---------------------------------------------------AAATATTAAAAATTAAAAT-----------------------------------TAGTGA-------------------------------------------------C-----------------------------------------------------AAATTT-------------------------------------------------------------------------------------TT----------------------------TTCA---T----------------------------------------------------T----------------------------------T--CCTGA-------------------------------------------------------------------------------------------------------AATC-------------------------------------------------------------------------------------------------------------------------------------------------ATT--TTGA-----------AAAATTTCATCATCTTT---TGCCGGCAATTAA--ATTTTA---------AAATTTACATTTTTTACATTTACACCAAAAAAATGATTAA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTAC
droBip1 scf7180000396371:862530-862708 + AATGGATGTTATCCAA-GCT---CAAT---TCTACGACGGTGTTCTTGGCTCTAACAAAACTAGAGGTAAGTTTT--------------------------------------------------------------------CAAGAAACTTCCAGAA-------------GGTTTT--------------------------------------------------------TTTCAAAATAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------T--CCTGA-------------------------------------------------------------------------------------------------------AATTTGGT--------------------------------------------------------------------------------------------------------------------------------------------------GAA------------AAAATTTCATCAGCCTTA-ATGCCGGCAATTAA--ATTTA-------------------------------------------------------------------------------------------------------------------AAAAAATCAATTTTAAATTAC
droKik1 scf7180000302391:1605538-1605949 - AATGGATGTTATTACC-GTG---CAAAGTATCTACGGCAGTGTTCTGGGATCAAACAAAAATAGAGGTAAGTTTTT-GA-A-----------GAG-----------------------------------------------AAGAAAAAGTTCTAGAA-------------ATATTTT--------------------------------------------------------TCCA------------------------------------------------------------------------------------------------------------------------------------------------------AACAAATTAGGAAGTTTTTTTTTTTAAGTTTGAA----------------A----AGTGC------TTGTG---TTTTATT---------A----------------------------------------------------------------------------------------------AAATGTTTCTGGAAGTTTCTGGAAATATTTTTCAAACTATTTTACATGTTTCAAATTTAAATAAATTTCCTGTTTATTTCATTTCCT-ATTTCT-----------------------------------------------------------------------------------------------------------------------------GT--------------TTGCTCTTCGAAATCCTCTTTGTAAATTTCATCAGCCCTT-----CGGCAATTAA--ATTTG----------TAATTTAC---------ATTTACA--------------CAATGACAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNAANAAAAAAAAAAAAAAAAAATAGCATAAAAAATCAATTTGCACTTAC
droFic1 scf7180000454113:3459011-3459361 - AATGGATGTTATCCCC-GTG---CAAACATTGTATGACGGTGTTTTTGGATCCAACAAAAATAGAGGTAAGTTCAGAG---------------AA---ATATAAAAGT-------------------GATTAAA-GAAAG-TTCGGGAAGGTTCCAGAA-------------AATATTTAAAAGTTAATA-----AAA-------------------------------------------------ACCAA-AAACTGATTTTTTTGAA-------------------------------------CT-------------------------------------------------------------------------------------------------------------TCAAG----------------TAAAGGTTGGAA--GGGTTCAGATTAATTTC---------GAAAAT-TTATTGATCATTTTTTTTCAACGTTAAAAAT----------------------------------A--CCTGA-------------------------------------------------------------------------------------------------------ACTTATTTT---------------------------------------------AAAAT----------------------------------------------------------------------------------CAACAACTGCT--TGGCAATCCTCCTTGAAAATTTCATCAGCAATT-------------AA--GTTTT----------AAATTTAC---------ATTTACA--------------CA------------------------------------------------------A-AAAATGCATAAAAAATCAATTTGCAATTAC
droEle1 scf7180000490564:2176469-2176838 + AATGGATGTTATCCCC-GTG---CAAGGCATCTACGGCGTTATTCTGGGATCAAACAAAAATAGAGGTAAGTTGA-----G-A-ATT-CAAAAAAAAAAAAAACGGAT-------------------ACATAGC--AAGATTTGTGGAAGGTTCCAGAA-------------TGTTCGAAAATCTAAAAAA-----------------------------------AAGATG-TTT-----------------------------------------------------------------GATAATTTTTAACAAAATGTAAACCAGTTT-AAC---TCT------------------------------------------------------------------------------TTTG------------ATAC----------AAATTCCTTCA---TTTTTAA---------AAAAGT-CT-TAAAAGTCT-T----AAACCTT-----T--------------------------AAATA---G--CTTGA-------------------------------------------------------------------------------------------------------ACTTACGA-CA-----------------------------------------AAAAAAA----------------------------------------------------------------------------------ACACAATTGCT--CTGAAATCCTCCTTAAACATTTCATCAGCTATTA------------AA--GTTTG----------TAATTTAC---------ATTAACA--------------CA------------------------------------------------------A-AAAATGCATAAAAAATCAATTTGCAATTAC
droRho1 scf7180000780024:112085-112454 - AATGGATGTTATCCCC-GTG---CAAAGCATCTACGGCGGTATTCTGGGATCAAACAAAATTAGAGGTAAGTTGAG-GA-A-A-ATT-CAGAAAA---AAA---GTGT-------------------CTATAAA-GAAAG-TTCGGGAAGGTTCCAGAA-------------AGTTTTAAAATCTTAAG-------------------------------------------------------------------------------------------CA-ACTTAAATTTATATTTTTTTAAGTTTTTAA--AAATTTATACAAGTTTTAGA---TTT----------------------------------------TTATATAAAAAA---------------------------------------------------------AACCTCTTCA---TTT--GA---------ACACAT-TT-AAAAAATCC-G----GTACCTT-----T--------------------------AAATA---G--CTTGA-------------------------------------------------------------------------------------------------------ACTTAT------------------------------------------------AAAGC----------------------------------------------------------------------------------AAACAATTGCC--TTGCAATCCTCCTTGAAAATTTCATCAGCTATTA------------AA--GTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------A-AAAATGCATAAAAAATCAATTTGCAATTAC
droBia1 scf7180000302193:344703-345003 - AATGGATGTCATCCCC-ACG---CAGAGCATCTACGGCAGTGTTCGAGGATCAAACAAAACTAAAGGTGAGTTGGG-GA-A-A-GGT-CTGGAAG---AAA--------------------------------C-GAGCG-ATCGGGAAGGTTCTGGAA-------------AAACGCGAGTTCTTGAGAT---------------------------------------------------------TCA--------------------ACAGTTCGG------------------TTTTCTAAGTT-------------------------------------------------------------------------------------------------------------TCACGTTTCTTTTGTGAGTTT--------------------------------------------------------------------------------------------------------AAATTCA-------AAACCTCT-------------------------------------------------------------------------------------------------------CCACA-----------------------------------------ATATAGC----------------------------------------------------------------------------------CCGCGATTGCT--GGGCAATCCTCCTTG-AAATTTCGTCAGCAGTT-------------AT--GTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------A-AAAATGCATAAAAAATCAATTTGCAATTAC
droTak1 scf7180000415681:143147-143421 + AATGGATGTTATCCCC-GTG---CAGAGCATCTACGGTAGTGTCCGAGGATCAAACAAAACAATAGGTAAGTTGAGGA--AAAAAATCCTACAAA---AAG---G----------------------------TGAAAAG-ATCGAGAAGGTTCTAGAA-------------AGTTTCGATAG------------------------------------------------------------CCAGAC----------------------ACAAATTTT------------------TTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCTT-----T----------------------------------A--CTTGA-------------------------------------------------------------------------------------------------------ACTTGTTCGCA---------------------------------------------AAA----------------------------------------------------------------------------------CAACAATTGCT--TTGCAATCCTCCTTG-AAATTTCATCAGCAATT-------------AA--GTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------A-AAAATGCATAAAAAATCAATTTGCAATTAC
droEug1 scf7180000409711:3131293-3131624 + AATGGATGTTATTCCT-GTG---CAAAGTATCTACGGTAGTGTGCGAGGATCAAACAAAACTAAAGGTAAGTTCAA-GA-A-A-ATT-CTGGAAG---AAA---G----------------------------T--AAGATATTTTTAGGGTTCTAGAA-------------AGTTCAGAAAAAA------GTGG-------------------------------------------------------A-----------------------------AC------------------------------------------------------------------------------------------------------------------------------------------AAATTTCTTTTGCGATTTC----------AA--AAATAAA---CATCTGACAAAGTCAAAAATATATTTTTGAATATT-T----AATTCG------T----------------------------------TCACCTTA-------------------------------------------------------------------------------------------------------ACTTA----------------AAAAC-------------------------CAAAAAAA----------------------------------------------------------------------------------CCACAACTGCT--TTGCAAAGCTCCTTG-AAATTTCATCAGCAATT-------------AAGATTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCCATTAC
dm3 chr3L:11245996-11246375 + AATGGATGTTATTGCTCGGGAA-CAAATCATCTACGGTAGCCTGCAGGGATCAAACAAAAATAAAGGTAAGTGTACCGA-A-A-ATT-CGGAGAG---AAATTTGTGT-------------------CTATAGG-GAAGA-ATCGGGAAAGTTCCAGAA-------------AGATTTTAAAACTTAAAAT-----AA-------------------------AACATGTGT-TTCCCAAAATGCAGTCTA--------CTTTTA--------------------------------------------------------------------TCAAATT-------------------------------------------------------------------------------TGTG------------TATA----------AA--GCGTACA---TATTTTT---------AAATGT-TTTTTGAATACT-T----AAACTG------T----------------------------------T--CTTGA-------------------------------------------------------------------------------------------------------ACTTGTGTATAATTTAAATAAAAAAA-------------------------AAGATGAA----------------------------------------------------------------------------------CAACAACTGCT--GTACAAAGCTCCTTG-AAATTTCATCAGCAATT-------------AA--CTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTAC
droSim2 3l:10986411-10986780 + dsi_11689 AATGGATGTTATTGCTCGGGAA-CAAATCATCTACGGTAGCCTGCAGGGATCAAACAAAAATAAAGGTAAGTGTACCGA-G-A-ATT-CGGCGAG---AAATACGTGT-------------------CTATAGG-GAAGA-AACGGGAAGGTTCCAGAA-------------AGATCTTAAAACTTAAAAC-----------------------------------ATGTGG-TTCGCAAAATGCAGTCTA----------------------------------------------------------------------------------TCAAATTT------------------------------------------------------------------------------TGTG------------TTTC----------AA--GCGTACA---TATTTTT---------AAATGT-TTTTTGAATATT-T----AAACTG------T----------------------------------T--CTTGA-------------------------------------------------------------------------------------------------------ACTTGTGTATAATATTAATAAAATAA-------------------------AAAATGAA----------------------------------------------------------------------------------CAACAACTGCT--TTGCAAAGCTCCTTG-AAATTTCATCAGCAATT-------------AA--CTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTAC
droSec2 scaffold_0:3467530-3467899 + AATGGATGTTATTGCTCGGGAA-CAAATCATCTACGGTAGCCTGCAGGGATCAAACAAAAATAAAGGTAAGTGTACCGA-A-A-ATT-CGGCGAG---AAATACGTGT-------------------CTGTAGG-GAAGA-ATCGGGAAGGTTCCAGAA-------------AGATTTTAAAACTTAAAAC-----------------------------------ATGTGG-TTCGCAAAATGCAGTATA----------------------------------------------------------------------------------TCAAATTT------------------------------------------------------------------------------TGTG------------TATC----------AA--GCGTACA---TATTTTT---------AAATGT-TTTTTGAATATT-T----AAACTG------T----------------------------------T--CTTGA-------------------------------------------------------------------------------------------------------ACTTGTGTATAATATTAATAAAATAA-------------------------AAGATGAA----------------------------------------------------------------------------------CAACAACTGCT--TTGCAAAGCTCCTTG-AAATTTCATCAGCAATT-------------AA--CTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTAC
droYak3 3L:11287265-11287359 + AAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCT--TTGCAAAGCTCCTTG-AAATTTCATCAGCAATT-------------AA--CTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTAC
droEre2 scaffold_4784:11256953-11257298 + AATGAATGTTATTGCTCGGGAA-CAAATCATCTACGGTAGCCTGCAAGGATCAAACAAAAATAAAGGTAAGTTCACCGA-A-A-ATT-CGTAGAG---CAATACGTCC-------------------CTATAGG-GAAGA-ATCGCGAAGGTTCCAGAA-------------AGATCTTAAAACTTAAAAC-----------------------------------GAGTGG-TTCCCAAAATGCAGTCTA--------GATTTTTCAAATAAATATAAATAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGC------TTGAT---TATTTTT---------AAATGT-TATTCGAACATTTT----AAACTG------T----------------------------------------------------------------------------------------------------------------------------------TTATCACATTGTTGAACTTGTGTA-----------AGAAAA-------------------------AAGAGAAA----------------------------------------------------------------------------------CAACAACTGCT--TTGCAAAGCTCCTTG-AAATTTCATCAGCAAATT------------AA--CTTTG----------TAATTTAC---------ATTT-------------------------------------------------------------------------------------------------------AC
dp5 XR_group6:10453195-10453537 - AATGGAGGTTATTCCC-GTT---CAATCCATCTACGGCGGTGTGCTGGGCTCAAACAAAACTAGAGGTAAGTGTACAGGAGAGAACT-CT---------------CCCTGATAGAGAATAGAAAAGAAAAGAAA-GAAAG-TTCTGGAACCATCCGGAA-------------GAA--------------------------------------------------------GTGTGCGAAAAGGCAGACCAA-AAAAGTGTTGTTTAGAATACAATTATA------------------TTTTTTAATTT-------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------CAAAATATTAGAGTAGAGTCCCTTTTGCCGTTGAATCG----------ACCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGT-TG--------TCTTCCTT--GTGCTATAGCCCTGA-AAATGGCATCAGTAAAT-------------AA--TTTCG----------AAAA---T---------AATTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTAC
droPer2 scaffold_20:406612-406957 - AATGGAGGTTATTCCC-GTT---CAATCCATCTACGGCGGTGTGCTGGGCTCAAACAAAACTAGAGGTAAGTGTACAGG------------AGAG---AACTTCTCCCTGATAGAGAATAGAAAAGAAAAGAAA-GAAAG-TTCTGGAACCATCCGGAA-------------GAA--------------------------------------------------------GTGTGCGAAAAGGCAGACCAAAAAAAGTGTTGTTTAGAATACAAGTATT------------------TTTGTTAATTT-------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------CAAAATAGTAGAGTAGAGTCCCTTTTGCCGTTGAATCG----------ACCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTG--------TCTTCCTT--GTGCTATAGCCCTGA-AAATGGCATCAGTAAAT-------------AA--TTTCG----------AAAA---T---------AATTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTAC
droWil2 scf2_1100000004511:1642334-1642396 + TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATACAAAAA-------------------------A------ACGA-------------------------------------------------------------------------------CAACA------------------------------------------------------------------------------------------------A--------------AA------------------------------------------------------AAGAAATGCATAAAAAATCAATTTGCAATTAC
droVir3 scaffold_13049:23685047-23685364 - AAACGAATTCAGCCCA-A-AAGCCACA---------------------------------------------------------------------------------------------------------------TG-CTCTAGAGTGTTCCAGAAAACAGTTTCGAATAGTTTTCA---------------AAAATCAAAAA----------------------------------------------------------------------------------------------------------------------TCACTTG-AAC---TCTTTGGCAAATCAAACTCAAATTTTCAACTCAATGCAAATTTTTC---CAAAAAAACCACTAAGATTCTTTTTTTTATTT-------------------T--------------------------------------------------------------------------------------------------------AAATTCAAT----TAATTGTTTCCACAATGAATTCGA----------------------------------------------------------------------------------GTTTGT-----------------------------------------------AAAGCA----------------------------------------------------------------------------------TTGCAATTACT--TAGC------------ACATTTCATCAGATTTT-TTGAGTGCAATTGT--TTTTCTTTTTTATTGCAAT---T---------AATTTTT--------------TA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTACACATGC
droMoj3 scaffold_6680:18304520-18304752 - AATTTTTAGTT-------------------------------TAAAATTATTGCAAA-----------------------------------AAG-------------------------------------------------------------------------------AAAAAA---------------AAAATTAAAAACCATTTTTGTGTTGAGG--------ATTTTCGGA------AATCTAAGAAATAGAAATTTCAAATACAAATATTTCAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGC------TTTTA---TTTTTTC---------G---------------------------------AAATTTTTGAATTTAAAAATT-----------------------------TT----------------------------------------TCAAACTG-------------------------A--------ATTTCAATTAATTTGATTTTTTAT-----------GTAAAA-------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAAG--------------CA------------------------------------------------------AAAAATTGCATTAAAAATCAATTTACACACAT
droGri2 scaffold_15110:13978849-13979175 + AATGGAAGTTCTCGCT-GTG---CAGTCAAATTACGGCGGTGTCCTCGGCTCCAACAAAGTTCGAGGTAAGCTCTCCA--AAA-AT--ATAAAAAAAAAAA---T----------------------------TCAAA-----AACTTAGTTTCTAGAA-------------TATTTAAAAAATC------TTGA-------------------------------------------------------G-----------------------------TA------------------------------------------------------------------------------------------------------------------------------------------AAATTTAT----------------------------------------------------------------------------------------T----------------------------------T--CCTGT-------------------------------------------------------------------------------------------------------ATTC--------AATTCAA-AATTTAAATATGAATTCAAAATCTTTTTCAA-ATTTA-AGGGCAACTTGGAAAAAAATCATAAAATTTTCAATATTTACAAAATGCTAATTCCAAAGCTAGTTTTTAATTTATTCGCAATTAGAAAATTGCT--TGGC------------ACATTGCATCAGATTTT--------------------TA--------------------------------------------------------------------------------------------------------------------------TTGTTTACAACTAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AATGGATGTTATGCCA-GCT---CCAT---TCTACATTA---------CTTCAATCAAAAATAACGGTAAGTTCAGTGA-A-GAATT-CTTCGA----------------AGAAAAAATAT---------------------------------------------------AAATATTAAAAATTAAAAT-----------------------------------TAGTGA-------------------------------------------------C-----------------------------------------------------AAATTT-------------------------------------------------------------------------------------TT----------------------------TTCA---T----------------------------------------------------T----------------------------------T--CCTGA-------------------------------------------------------------------------------------------------------AATC-------------------------------------------------------------------------------------------------------------------------------------------------ATT--TTGA-----------AAAATTTCATCATCTTT---TGCCGGCAATTAA--ATTTTA---------AAATTTACATTTTTTACATTTACACCAAAAAAATGATTAA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................GCT---CCAT---TCTACATTA---------CTTCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
............................................................ATAACGGTAAGTTCAGTGA-A-GAATT-CTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
..........................T---TCTACATTA---------CTTCAATCAAAAATAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
........TTATGCCA-GCT---CCAT---TCTACATTA---------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..........ATGCCA-GCT---CCAT---TCTACATTA---------CT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droBip1
AATGGATGTTATCCAA-GCT---CAAT---TCTACGACGGTGTTCTTGGCTCTAACAAAACTAGAGGTAAGTTTT--------------------------------------------------------------------CAAGAAACTTCCAGAA-------------GGTTTT--------------------------------------------------------TTTCAAAATAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------T--CCTGA-------------------------------------------------------------------------------------------------------AATTTGGT--------------------------------------------------------------------------------------------------------------------------------------------------GAA------------AAAATTTCATCAGCCTTA-ATGCCGGCAATTAA--ATTTA-------------------------------------------------------------------------------------------------------------------AAAAAATCAATTTTAAATTACSizeHit CountTotal NormTotal
No Reads
droKik1
AATGGATGTTATTACC-GTG---CAAAGTATCTACGGCAGTGTTCTGGGATCAAACAAAAATAGAGGTAAGTTTTT-GA-A-----------GAG-----------------------------------------------AAGAAAAAGTTCTAGAA-------------ATATTTT--------------------------------------------------------TCCA------------------------------------------------------------------------------------------------------------------------------------------------------AACAAATTAGGAAGTTTTTTTTTTTAAGTTTGAA----------------A----AGTGC------TTGTG---TTTTATT---------A----------------------------------------------------------------------------------------------AAATGTTTCTGGAAGTTTCTGGAAATATTTTTCAAACTATTTTACATGTTTCAAATTTAAATAAATTTCCTGTTTATTTCATTTCCT-ATTTCT-----------------------------------------------------------------------------------------------------------------------------GT--------------TTGCTCTTCGAAATCCTCTTTGTAAATTTCATCAGCCCTT-----CGGCAATTAA--ATTTG----------TAATTTAC---------ATTTACA--------------CAATGACAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNAANAAAAAAAAAAAAAAAAAATAGCATAAAAAATCAATTTGCACTTACSizeHit CountTotal NormTotal
No Reads
droFic1
AATGGATGTTATCCCC-GTG---CAAACATTGTATGACGGTGTTTTTGGATCCAACAAAAATAGAGGTAAGTTCAGAG---------------AA---ATATAAAAGT-------------------GATTAAA-GAAAG-TTCGGGAAGGTTCCAGAA-------------AATATTTAAAAGTTAATA-----AAA-------------------------------------------------ACCAA-AAACTGATTTTTTTGAA-------------------------------------CT-------------------------------------------------------------------------------------------------------------TCAAG----------------TAAAGGTTGGAA--GGGTTCAGATTAATTTC---------GAAAAT-TTATTGATCATTTTTTTTCAACGTTAAAAAT----------------------------------A--CCTGA-------------------------------------------------------------------------------------------------------ACTTATTTT---------------------------------------------AAAAT----------------------------------------------------------------------------------CAACAACTGCT--TGGCAATCCTCCTTGAAAATTTCATCAGCAATT-------------AA--GTTTT----------AAATTTAC---------ATTTACA--------------CA------------------------------------------------------A-AAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotal
No Reads
droEle1
AATGGATGTTATCCCC-GTG---CAAGGCATCTACGGCGTTATTCTGGGATCAAACAAAAATAGAGGTAAGTTGA-----G-A-ATT-CAAAAAAAAAAAAAACGGAT-------------------ACATAGC--AAGATTTGTGGAAGGTTCCAGAA-------------TGTTCGAAAATCTAAAAAA-----------------------------------AAGATG-TTT-----------------------------------------------------------------GATAATTTTTAACAAAATGTAAACCAGTTT-AAC---TCT------------------------------------------------------------------------------TTTG------------ATAC----------AAATTCCTTCA---TTTTTAA---------AAAAGT-CT-TAAAAGTCT-T----AAACCTT-----T--------------------------AAATA---G--CTTGA-------------------------------------------------------------------------------------------------------ACTTACGA-CA-----------------------------------------AAAAAAA----------------------------------------------------------------------------------ACACAATTGCT--CTGAAATCCTCCTTAAACATTTCATCAGCTATTA------------AA--GTTTG----------TAATTTAC---------ATTAACA--------------CA------------------------------------------------------A-AAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotal
No Reads
droRho1
AATGGATGTTATCCCC-GTG---CAAAGCATCTACGGCGGTATTCTGGGATCAAACAAAATTAGAGGTAAGTTGAG-GA-A-A-ATT-CAGAAAA---AAA---GTGT-------------------CTATAAA-GAAAG-TTCGGGAAGGTTCCAGAA-------------AGTTTTAAAATCTTAAG-------------------------------------------------------------------------------------------CA-ACTTAAATTTATATTTTTTTAAGTTTTTAA--AAATTTATACAAGTTTTAGA---TTT----------------------------------------TTATATAAAAAA---------------------------------------------------------AACCTCTTCA---TTT--GA---------ACACAT-TT-AAAAAATCC-G----GTACCTT-----T--------------------------AAATA---G--CTTGA-------------------------------------------------------------------------------------------------------ACTTAT------------------------------------------------AAAGC----------------------------------------------------------------------------------AAACAATTGCC--TTGCAATCCTCCTTGAAAATTTCATCAGCTATTA------------AA--GTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------A-AAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotal
No Reads
droBia1
AATGGATGTCATCCCC-ACG---CAGAGCATCTACGGCAGTGTTCGAGGATCAAACAAAACTAAAGGTGAGTTGGG-GA-A-A-GGT-CTGGAAG---AAA--------------------------------C-GAGCG-ATCGGGAAGGTTCTGGAA-------------AAACGCGAGTTCTTGAGAT---------------------------------------------------------TCA--------------------ACAGTTCGG------------------TTTTCTAAGTT-------------------------------------------------------------------------------------------------------------TCACGTTTCTTTTGTGAGTTT--------------------------------------------------------------------------------------------------------AAATTCA-------AAACCTCT-------------------------------------------------------------------------------------------------------CCACA-----------------------------------------ATATAGC----------------------------------------------------------------------------------CCGCGATTGCT--GGGCAATCCTCCTTG-AAATTTCGTCAGCAGTT-------------AT--GTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------A-AAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotal
No Reads
droTak1
AATGGATGTTATCCCC-GTG---CAGAGCATCTACGGTAGTGTCCGAGGATCAAACAAAACAATAGGTAAGTTGAGGA--AAAAAATCCTACAAA---AAG---G----------------------------TGAAAAG-ATCGAGAAGGTTCTAGAA-------------AGTTTCGATAG------------------------------------------------------------CCAGAC----------------------ACAAATTTT------------------TTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCTT-----T----------------------------------A--CTTGA-------------------------------------------------------------------------------------------------------ACTTGTTCGCA---------------------------------------------AAA----------------------------------------------------------------------------------CAACAATTGCT--TTGCAATCCTCCTTG-AAATTTCATCAGCAATT-------------AA--GTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------A-AAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotal
No Reads
droEug1
AATGGATGTTATTCCT-GTG---CAAAGTATCTACGGTAGTGTGCGAGGATCAAACAAAACTAAAGGTAAGTTCAA-GA-A-A-ATT-CTGGAAG---AAA---G----------------------------T--AAGATATTTTTAGGGTTCTAGAA-------------AGTTCAGAAAAAA------GTGG-------------------------------------------------------A-----------------------------AC------------------------------------------------------------------------------------------------------------------------------------------AAATTTCTTTTGCGATTTC----------AA--AAATAAA---CATCTGACAAAGTCAAAAATATATTTTTGAATATT-T----AATTCG------T----------------------------------TCACCTTA-------------------------------------------------------------------------------------------------------ACTTA----------------AAAAC-------------------------CAAAAAAA----------------------------------------------------------------------------------CCACAACTGCT--TTGCAAAGCTCCTTG-AAATTTCATCAGCAATT-------------AAGATTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCCATTACSizeHit CountTotal NormTotal
No Reads
dm3
AATGGATGTTATTGCTCGGGAA-CAAATCATCTACGGTAGCCTGCAGGGATCAAACAAAAATAAAGGTAAGTGTACCGA-A-A-ATT-CGGAGAG---AAATTTGTGT-------------------CTATAGG-GAAGA-ATCGGGAAAGTTCCAGAA-------------AGATTTTAAAACTTAAAAT-----AA-------------------------AACATGTGT-TTCCCAAAATGCAGTCTA--------CTTTTA--------------------------------------------------------------------TCAAATT-------------------------------------------------------------------------------TGTG------------TATA----------AA--GCGTACA---TATTTTT---------AAATGT-TTTTTGAATACT-T----AAACTG------T----------------------------------T--CTTGA-------------------------------------------------------------------------------------------------------ACTTGTGTATAATTTAAATAAAAAAA-------------------------AAGATGAA----------------------------------------------------------------------------------CAACAACTGCT--GTACAAAGCTCCTTG-AAATTTCATCAGCAATT-------------AA--CTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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droSim2
AATGGATGTTATTGCTCGGGAA-CAAATCATCTACGGTAGCCTGCAGGGATCAAACAAAAATAAAGGTAAGTGTACCGA-G-A-ATT-CGGCGAG---AAATACGTGT-------------------CTATAGG-GAAGA-AACGGGAAGGTTCCAGAA-------------AGATCTTAAAACTTAAAAC-----------------------------------ATGTGG-TTCGCAAAATGCAGTCTA----------------------------------------------------------------------------------TCAAATTT------------------------------------------------------------------------------TGTG------------TTTC----------AA--GCGTACA---TATTTTT---------AAATGT-TTTTTGAATATT-T----AAACTG------T----------------------------------T--CTTGA-------------------------------------------------------------------------------------------------------ACTTGTGTATAATATTAATAAAATAA-------------------------AAAATGAA----------------------------------------------------------------------------------CAACAACTGCT--TTGCAAAGCTCCTTG-AAATTTCATCAGCAATT-------------AA--CTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----AAACTG------T----------------------------------T--CTTGA-------------------------------------------------------------------------------------------------------ACTTGTGT.................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
..............CTCGGGAA-CAAATCATCTACGGTAGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA--------------CA------------------------------------------------------AAAAAATGCATAAAA.................2111.00100010000000000000
...................................................................................................................................................................................................................................................GCAGTCTA----------------------------------------------------------------------------------TCAAATTT------------------------------------------------------------------------------TGTG------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
...............................CTACGGTAGCCTGCAGGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.......................................................................................................................................................TTCCAGAA-------------AGATCTTAAAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
............................CATCTACGGTAGCCTGCAGGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT-------------AA--CTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------................................2811.00100010000000000000
.................................ACGGTAGCCTGCAGGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC----------AA--GCGTACA---TATTTTT---------AAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTG------T----------------------------------T--CTTGA-------------------------------------------------------------------------------------------------------ACTTGTGC.................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..........................................TGCAGGGATCAAACAAAAATAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
AATGGATGTTATTGCTCGGGAA-CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAA----------------------------------------------------------------------------------CAACAACTGCT--T..............................................................................................................................................................................................1911.00100100000000000000
droSec2
AATGGATGTTATTGCTCGGGAA-CAAATCATCTACGGTAGCCTGCAGGGATCAAACAAAAATAAAGGTAAGTGTACCGA-A-A-ATT-CGGCGAG---AAATACGTGT-------------------CTGTAGG-GAAGA-ATCGGGAAGGTTCCAGAA-------------AGATTTTAAAACTTAAAAC-----------------------------------ATGTGG-TTCGCAAAATGCAGTATA----------------------------------------------------------------------------------TCAAATTT------------------------------------------------------------------------------TGTG------------TATC----------AA--GCGTACA---TATTTTT---------AAATGT-TTTTTGAATATT-T----AAACTG------T----------------------------------T--CTTGA-------------------------------------------------------------------------------------------------------ACTTGTGTATAATATTAATAAAATAA-------------------------AAGATGAA----------------------------------------------------------------------------------CAACAACTGCT--TTGCAAAGCTCCTTG-AAATTTCATCAGCAATT-------------AA--CTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................CATCTACGGTAGCCTGCAGGGATCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
....GATGTTATTGCTCGGGAA-CAAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
...............................CTACGGTAGCCTGCAGGGATCAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
..........................ATCATCTACGGTAGCCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
.....ATGTTATTGCTCGGGAA-CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.ATGGATGTTATTGCTCGGGAA-CAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
.....ATGTTATTGCTCGGGAA-CAAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--GCGTACA---TATTTTT---------AAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
....................AA-CAAATCATCTACGGTAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
..............................TCTACGGTAGCCTGCAGGGATCAAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC----------AA--GCGTACA---TATTTTT---------AAATGT-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC----------AA--GCGTACA---TATTTTT---------AAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
........................AAATCATCTACGGTAGCCTGCAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...............................CTACGGTAGCCTGCAGGGATCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
AATGGATGTTATTGCTCGGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...............................CTACGGTAGCCTGCAGGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...................GAA-CAAATCATCTACGGTAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
..............................TCTACGGTAGCCTGCAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
............................................CAGGGATCAAACAAAAATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
droYak3
AAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCT--TTGCAAAGCTCCTTG-AAATTTCATCAGCAATT-------------AA--CTTTG----------TAATTTAC---------ATTTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTTG-AAATTTCATCAGCAATT-------------.................................................................................................................................................2511.00101000000000
droEre2
AATGAATGTTATTGCTCGGGAA-CAAATCATCTACGGTAGCCTGCAAGGATCAAACAAAAATAAAGGTAAGTTCACCGA-A-A-ATT-CGTAGAG---CAATACGTCC-------------------CTATAGG-GAAGA-ATCGCGAAGGTTCCAGAA-------------AGATCTTAAAACTTAAAAC-----------------------------------GAGTGG-TTCCCAAAATGCAGTCTA--------GATTTTTCAAATAAATATAAATAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGC------TTGAT---TATTTTT---------AAATGT-TATTCGAACATTTT----AAACTG------T----------------------------------------------------------------------------------------------------------------------------------TTATCACATTGTTGAACTTGTGTA-----------AGAAAA-------------------------AAGAGAAA----------------------------------------------------------------------------------CAACAACTGCT--TTGCAAAGCTCCTTG-AAATTTCATCAGCAAATT------------AA--CTTTG----------TAATTTAC---------ATTT-------------------------------------------------------------------------------------------------------ACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............TGCTCGGGAA-CAAATCATCTACGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.......................CAAATCATCTACGGTAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.....ATGTTATTGCTCGGGAA-CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
....................AA-CAAATCATCTACGGTAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..........ATTGCTCGGGAA-CAAATCATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.......GTTATTGCTCGGGAA-CAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
.......GTTATTGCTCGGGAA-CAAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
............................CATCTACGGTAGCCTGCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
........................AAATCATCTACGGTAGCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
...GAATGTTATTGCTCGGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
.................................ACGGTAGCCTGCAAGGATCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..........ATTGCTCGGGAA-CAAATCATCTACGGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
.....................A-CAAATCATCTACGGTAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
..........ATTGCTCGGGAA-CAAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.........TATTGCTCGGGAA-CAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
AATGAATGTTATTGCTCGGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
dp5
AATGGAGGTTATTCCC-GTT---CAATCCATCTACGGCGGTGTGCTGGGCTCAAACAAAACTAGAGGTAAGTGTACAGGAGAGAACT-CT---------------CCCTGATAGAGAATAGAAAAGAAAAGAAA-GAAAG-TTCTGGAACCATCCGGAA-------------GAA--------------------------------------------------------GTGTGCGAAAAGGCAGACCAA-AAAAGTGTTGTTTAGAATACAATTATA------------------TTTTTTAATTT-------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------CAAAATATTAGAGTAGAGTCCCTTTTGCCGTTGAATCG----------ACCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGT-TG--------TCTTCCTT--GTGCTATAGCCCTGA-AAATGGCATCAGTAAAT-------------AA--TTTCG----------AAAA---T---------AATTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGTAAAT-------------AA--TTTCG----------AAAA---T---------AA...........................................................................................................2411.0010100000000
....................................GCGGTGTGCTGGGCTCAAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................GAACCATCCGGAA-------------GAA--------------------------------------------------------GTGTGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................GTT---CAATCCATCTACGGCGGTGTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
....................................GCGGTGTGCTGGGCTCAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
.....................................CGGTGTGCTGGGCTCAAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................TCCATCTACGGCGGTGTGCTGGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..........................TCCATCTACGGCGGTGTGCTGGGCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
...................................................................................................................................AAA-GAAAG-TTCTGGAACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
AATGGAGGTTATTCCC-GTT---C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................CCATCCGGAA-------------GAA--------------------------------------------------------GTGTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.......................CAATCCATCTACGGCGGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................GGTGTGCTGGGCTCAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
...................................................................................................................................................AACCATCCGGAA-------------GAA--------------------------------------------------------GTGTGCGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.......................................GTGTGCTGGGCTCAAACAAAACTAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.........................................GTGCTGGGCTCAAACAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
........................................TGTGCTGGGCTCAAACAAAACTAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTATAGCCCTGA-AAATGGC........................................................................................................................................................................2211.0010100000000
droPer2
AATGGAGGTTATTCCC-GTT---CAATCCATCTACGGCGGTGTGCTGGGCTCAAACAAAACTAGAGGTAAGTGTACAGG------------AGAG---AACTTCTCCCTGATAGAGAATAGAAAAGAAAAGAAA-GAAAG-TTCTGGAACCATCCGGAA-------------GAA--------------------------------------------------------GTGTGCGAAAAGGCAGACCAAAAAAAGTGTTGTTTAGAATACAAGTATT------------------TTTGTTAATTT-------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------CAAAATAGTAGAGTAGAGTCCCTTTTGCCGTTGAATCG----------ACCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTG--------TCTTCCTT--GTGCTATAGCCCTGA-AAATGGCATCAGTAAAT-------------AA--TTTCG----------AAAA---T---------AATTACA--------------CA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................ACGGCGGTGTGCTGGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGTCCCTTTTGCCGTTGAATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
...........................CCATCTACGGCGGTGTGCTGGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCG----------ACCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGG....................................................................................................................................................................................................................1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTTGAATCG----------ACCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG.....................................................................................................................................................................................................................2211.001100000
.ATGGAGGTTATTCCC-GTT---CAATCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
............................CATCTACGGCGGTGTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.........................ATCCATCTACGGCGGTGTGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............................CTACGGCGGTGTGCTGGGCTCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..........ATTCCC-GTT---CAATCCATCTACGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...............................CTACGGCGGTGTGCTGGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................CTACGGCGGTGTGCTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droWil2
TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATACAAAAA-------------------------A------ACGA-------------------------------------------------------------------------------CAACA------------------------------------------------------------------------------------------------A--------------AA------------------------------------------------------AAGAAATGCATAAAAAATCAATTTGCAATTACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AAACGAATTCAGCCCA-A-AAGCCACA---------------------------------------------------------------------------------------------------------------TG-CTCTAGAGTGTTCCAGAAAACAGTTTCGAATAGTTTTCA---------------AAAATCAAAAA----------------------------------------------------------------------------------------------------------------------TCACTTG-AAC---TCTTTGGCAAATCAAACTCAAATTTTCAACTCAATGCAAATTTTTC---CAAAAAAACCACTAAGATTCTTTTTTTTATTT-------------------T--------------------------------------------------------------------------------------------------------AAATTCAAT----TAATTGTTTCCACAATGAATTCGA----------------------------------------------------------------------------------GTTTGT-----------------------------------------------AAAGCA----------------------------------------------------------------------------------TTGCAATTACT--TAGC------------ACATTTCATCAGATTTT-TTGAGTGCAATTGT--TTTTCTTTTTTATTGCAAT---T---------AATTTTT--------------TA------------------------------------------------------AAAAAATGCATAAAAAATCAATTTACACATGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................TTC---CAAAAAAACCACTAAGATTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------ACATTTCATCAGATTTT-TT...........................................................................................................................................................2011.001000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................................................................TTCGAATAGTTTTCA---------------AAAATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................CAAATCAAACTCAAATTTTCAACTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATCAGATTTT-TTGAGTG......................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TCACTTG-AAC---TCTTTGGCAAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
droMoj3
AATTTTTAGTT-------------------------------TAAAATTATTGCAAA-----------------------------------AAG-------------------------------------------------------------------------------AAAAAA---------------AAAATTAAAAACCATTTTTGTGTTGAGG--------ATTTTCGGA------AATCTAAGAAATAGAAATTTCAAATACAAATATTTCAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGC------TTTTA---TTTTTTC---------G---------------------------------AAATTTTTGAATTTAAAAATT-----------------------------TT----------------------------------------TCAAACTG-------------------------A--------ATTTCAATTAATTTGATTTTTTAT-----------GTAAAA-------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAAG--------------CA------------------------------------------------------AAAAATTGCATTAAAAATCAATTTACACACATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................AACCATTTTTGTGTTGAGG--------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..................................................................................................................................................................................................................TTTTGTGTTGAGG--------ATTTTCGGA------AAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
droGri2
AATGGAAGTTCTCGCT-GTG---CAGTCAAATTACGGCGGTGTCCTCGGCTCCAACAAAGTTCGAGGTAAGCTCTCCA--AAA-AT--ATAAAAAAAAAAA---T----------------------------TCAAA-----AACTTAGTTTCTAGAA-------------TATTTAAAAAATC------TTGA-------------------------------------------------------G-----------------------------TA------------------------------------------------------------------------------------------------------------------------------------------AAATTTAT----------------------------------------------------------------------------------------T----------------------------------T--CCTGT-------------------------------------------------------------------------------------------------------ATTC--------AATTCAA-AATTTAAATATGAATTCAAAATCTTTTTCAA-ATTTA-AGGGCAACTTGGAAAAAAATCATAAAATTTTCAATATTTACAAAATGCTAATTCCAAAGCTAGTTTTTAATTTATTCGCAATTAGAAAATTGCT--TGGC------------ACATTGCATCAGATTTT--------------------TA--------------------------------------------------------------------------------------------------------------------------TTGTTTACAACTAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................ATTACGGCGGTGTCCTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
..............................ATTACGGCGGTGTCCTCGGCTCCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
....GAAGTTCTCGCT-GTG---CAGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
.ATGGAAGTTCTCGCT-GTG---CAGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
....................................GCGGTGTCCTCGGCTCCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
....GAAGTTCTCGCT-GTG---CAGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101
.................................ACGGCGGTGTCCTCGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
...............................TTACGGCGGTGTCCTCGGCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
...................................GGCGGTGTCCTCGGCTCCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
................................................GCTCCAACAAAGTTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
AATGGAAGTTCTCGCT-GTG---CAGTCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101

Generated: 05/18/2015 at 04:34 AM