ID:

dan_2422

 Coordinate:

scaffold_13337:4989997-4990147 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.8 -16.7 -16.7

Flybase annnotation

CDS [Dana\GF24593-cds]; exon [dana_GLEANR_9303:3]; intron [Dana\GF24593-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. scaffold_6765:1-20 -
  2. dan_2422  scaffold_13337:4990030-4990049 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGTTGCGGAACTACGATGATGAGAAGAAGTGGGACATGATTTGCGATCAAGTAAGTAGTCAGGCCTACTAACTGTCACTCGTTTTTGTTTCCCATTCAGATAAGCAATTATAATGGCTATTTTATGGATCCCTTATATAATGCAAAAAAAAAAAAAAAAAAACCACCATTCATATCTCAACTGGAACTTCCTGTGGTTATATTTTTATTATATTTTTTTAAGTTCCCCCAGCTTGGCACTTTGGAATCTCT
**************************************************((.(((((......))))).)).........(((((((...((((..(((((.((..........))))))).))))..............)))))))............((((((........(((.....))).......))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V105
male body		 V106
head
 V055
head
 V039
embryo
......................................................................................................................................ATATAATGCAGAAAAAAGAAAAAAAA........................................................................................... 26 2 1 1.00 1 0 0 1 0 0
..................ATCAGAAGAAGTGGGACA....................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................CTGGGACTTCCTGTGGTTGT................................................... 20 2 1 1.00 1 0 0 0 1 0
.....................AGAAGAAGTGGGACATGATTTGC............................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
............ACGATGATGAGAAGAAGTGGGA......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................................AAAAAAAAAAAAAACCACCA................................................................................... 20 0 2 0.50 1 1 0 0 0 0
................TGTATAGAAGAAGTGGGACAT...................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1
...............................................................................................................................................AAAAAAAAAAAAACAAAAACCACCA................................................................................... 25 1 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................AAAAAAAAAAAGACCACCA................................................................................... 19 1 8 0.50 4 4 0 0 0 0
......................................................................................................................................ATGTAATGCAAAAAAAGAAAAAAAA............................................................................................ 25 2 2 0.50 1 0 0 1 0 0
.................................................................................................................................................AAAAAAAAAAAAAAAAACC....................................................................................... 19 0 20 0.45 9 9 0 0 0 0
.................................................................................................................................................AAAAAAAAAGAAAAAGACCACCA................................................................................... 23 2 3 0.33 1 1 0 0 0 0
..............................................................................................................................................CGAAAAAAAAGAAAAAACAACCACCA................................................................................... 26 3 3 0.33 1 1 0 0 0 0
...............................................................................................................................................AAAAAAAAAAGAAAAAAGACCACCA................................................................................... 25 2 3 0.33 1 1 0 0 0 0
................................................................................................................................................AAAAAAAAATAAAAAAGACCACCA................................................................................... 24 2 3 0.33 1 1 0 0 0 0
....................................................................................................................................................AAAAAAAAAAAAAACCACC.................................................................................... 19 0 4 0.25 1 1 0 0 0 0
................................................................................................................................................AAAAAAAAACAAAAAAGACCACCA................................................................................... 24 2 4 0.25 1 1 0 0 0 0
...................................................................................................................................................AAAAAAAAGAAAAGACCACC.................................................................................... 20 2 20 0.20 4 4 0 0 0 0
...................................................................................................................................................AAAAACAAAAAAAGACCACCA................................................................................... 21 2 20 0.20 4 4 0 0 0 0
...................................................................................................................................................AAAAAAAACAAAAAACCACCA................................................................................... 21 1 6 0.17 1 1 0 0 0 0
................................................................................................................................................AAAAAAACAAAAAAAAGACCACCA................................................................................... 24 2 6 0.17 1 1 0 0 0 0
.................................................................................................................................................AACAAAAAAAAAAAAAACCACC.................................................................................... 22 1 6 0.17 1 1 0 0 0 0
..................................................................................................................................................AAAAAAAATAAAAAAACCACC.................................................................................... 21 1 6 0.17 1 1 0 0 0 0
.................................................................................................................................................AAAAAAAAGAAAAAAGACCACC.................................................................................... 22 2 13 0.15 2 2 0 0 0 0
..................................................................................................................................................AAAAAAAAAAAAAAGACCACC.................................................................................... 21 1 13 0.15 2 2 0 0 0 0
...................................................................................................................................................AAAAAAACAAAAAAACCACC.................................................................................... 20 1 7 0.14 1 1 0 0 0 0
..................................................................................................................................................AAATAAAAAAAAAAAACCACC.................................................................................... 21 1 7 0.14 1 1 0 0 0 0
...............................................................................................................................................AAAAAAAAAAGAAAAAAGACCACC.................................................................................... 24 2 7 0.14 1 1 0 0 0 0
.................................................................................................................................................AAAAAAAAAAGAAAAGACCACCA................................................................................... 23 2 7 0.14 1 1 0 0 0 0
..................................................................................................................................................AAAAAAAAAAACAAAACCACCA................................................................................... 22 1 8 0.13 1 1 0 0 0 0
................................................................................................................................................AAAAAAAAAAAAAAAAGACCACC.................................................................................... 23 1 8 0.13 1 1 0 0 0 0
..................................................................................................................................................AAAAAAAAAAACAAGACCACCA................................................................................... 22 2 17 0.12 2 1 0 0 0 1
.................................................................................................................................................AAAAAACAAAAAAAAAACCACC.................................................................................... 22 1 9 0.11 1 1 0 0 0 0
....................................................................................................................................................AAAAAAAAAAAAGACCACC.................................................................................... 19 1 19 0.11 2 2 0 0 0 0
...................................................................................................................................................AAAAAAAAAAAAAAACCAC..................................................................................... 19 0 10 0.10 1 1 0 0 0 0
.................................................................................................................................................AAAGAAAAGAAAAAAGACCACC.................................................................................... 22 3 20 0.10 2 2 0 0 0 0
.....................................................................................................................................................AAACAAAAAAAGACCACCA................................................................................... 19 2 20 0.10 2 2 0 0 0 0
...............................................................................................................................................AAACAAAAAAACAAAAAAACCACC.................................................................................... 24 2 10 0.10 1 1 0 0 0 0
.................................................................................................................................................ACAAAAAAGAAAAAAGACCACC.................................................................................... 22 3 20 0.10 2 2 0 0 0 0
...................................................................................................................................................AAAAAAAAAACAAGACCACCA................................................................................... 21 2 20 0.10 2 2 0 0 0 0
...................................................................................................................................................AAAAACAAAAAAAGACCACC.................................................................................... 20 2 20 0.10 2 2 0 0 0 0
...............................................................................................................................................AAAAAAACAAAAAACAAAACCACC.................................................................................... 24 2 11 0.09 1 1 0 0 0 0
......................................................................................................................................................AAAAAAAAAAGACCACCA................................................................................... 18 1 11 0.09 1 1 0 0 0 0
..................................................................................................................................................AAAAAAAAAATAAAGACCACCA................................................................................... 22 2 11 0.09 1 1 0 0 0 0
..............................................................................................................................................CAAAAAAAAAAGAATAACAACCACC.................................................................................... 25 3 12 0.08 1 1 0 0 0 0
.........................................................................................................................................................AAAAAAAAACCACCATCC................................................................................ 18 1 12 0.08 1 1 0 0 0 0
................................................................................................................................................AAAAAAAAACAAAAAAGACCACC.................................................................................... 23 2 12 0.08 1 1 0 0 0 0
..................................................................................................................................................AAAAAAAACAAAAAGACCACCA................................................................................... 22 2 12 0.08 1 1 0 0 0 0
..................................................................................................................................................AACAAAAAAAAAAAAACCACC.................................................................................... 21 1 12 0.08 1 1 0 0 0 0
..................................................................................................................................................AAACAGAAAAAAAAAACCACCA................................................................................... 22 2 13 0.08 1 1 0 0 0 0
..................................................................................................................................................AAAAAAAAAAAACAAACCACCCT.................................................................................. 23 2 13 0.08 1 1 0 0 0 0
..................................................................................................................................................AAAAAAAAAAAAACAACCACC.................................................................................... 21 1 13 0.08 1 1 0 0 0 0
.................................................................................................................................................AAAAAAAAAGAAAAAGACCACC.................................................................................... 22 2 13 0.08 1 1 0 0 0 0
...................................................................................................................................................AAAAAAAAAAAAAGACCACC.................................................................................... 20 1 13 0.08 1 1 0 0 0 0
..................................................................................................................................................AACAAAAAAAAGAAAACCACCA................................................................................... 22 2 14 0.07 1 1 0 0 0 0
................................................................................................................................................AAAAATAAAAAAAAAAGACCACC.................................................................................... 23 2 14 0.07 1 1 0 0 0 0
...................................................................................................................................................AAAAAAAAAGAAAGACCACCA................................................................................... 21 2 14 0.07 1 0 0 0 0 1
..................................................................................................................................................AAAAAAAAACAAAAGACCACCA................................................................................... 22 2 15 0.07 1 1 0 0 0 0
...............................................................................................................................................AAAACAAAGAAAAAAAAGACCACC.................................................................................... 24 3 16 0.06 1 1 0 0 0 0
..................................................................................................................................................AAAAACACAAAAAAAACCACCA................................................................................... 22 2 16 0.06 1 1 0 0 0 0
....................................................................................................................................................AAAAAAGAAAAAGACCACCA................................................................................... 20 2 16 0.06 1 1 0 0 0 0
................................................................................................................................................AAACAAAAAAAAAAAAGACCACC.................................................................................... 23 2 16 0.06 1 1 0 0 0 0
...................................................................................................................................................AAAAAAAAAACAAAACCACC.................................................................................... 20 1 16 0.06 1 1 0 0 0 0
.................................................................................................................................................AAAAAAAAGAAATAAGACCACCA................................................................................... 23 3 16 0.06 1 1 0 0 0 0
.................................................................................................................................................AAAGAAAAAAAAAAAGACCACC.................................................................................... 22 2 17 0.06 1 1 0 0 0 0
.................................................................................................................................................AAAAAACAAAAAAAAGACCACC.................................................................................... 22 2 17 0.06 1 1 0 0 0 0
...................................................................................................................................................AAAAAAAAAAAACAACCACC.................................................................................... 20 1 18 0.06 1 1 0 0 0 0
...................................................................................................................................................AATAAAAAAAAAAGACCACCA................................................................................... 21 2 18 0.06 1 1 0 0 0 0
....................................................................................................................................................AAAAAAAGAAAAGACCACCA................................................................................... 20 2 18 0.06 1 1 0 0 0 0
............................................................................................................................................TGCAAAGAAAAACAAAAAAAAAC........................................................................................ 23 2 18 0.06 1 1 0 0 0 0
.................................................................................................................................................AAAATAAAAAAAAAAGACCACC.................................................................................... 22 2 19 0.05 1 1 0 0 0 0
....................................................................................................................................................AAAAAAAAGAAAGACCACCA................................................................................... 20 2 19 0.05 1 1 0 0 0 0
..................................................................................................................................................TAAAAAACAAAAAAAACCACC.................................................................................... 21 2 20 0.05 1 1 0 0 0 0
...............................................................................................................................................AAAAAGAAAAAAATAAACACCACC.................................................................................... 24 3 20 0.05 1 1 0 0 0 0
...............................................................................................................................................ATAAAAAACAAAAAATAAACCACC.................................................................................... 24 3 20 0.05 1 1 0 0 0 0
....................................................................................................................................................AAAAAAAAAAATAACCACC.................................................................................... 19 1 20 0.05 1 1 0 0 0 0
...................................................................................................................................................AAAAAAAAAATAAGACCACCA................................................................................... 21 2 20 0.05 1 1 0 0 0 0
......................................................................................................................................................AAAAAAAATAAACCACCA................................................................................... 18 1 20 0.05 1 1 0 0 0 0
........................................................................................................................................ATAATGCAGAAAAAACAAAAA.............................................................................................. 21 2 20 0.05 1 0 0 0 0 1
..................................................................................................................................................AAAACAAAAAAAAAGACCACC.................................................................................... 21 2 20 0.05 1 1 0 0 0 0
..................................................................................................................................................AAAAAGATAAAAAAGACCACC.................................................................................... 21 3 20 0.05 1 1 0 0 0 0
....................................................................................................................................................AAAAACAAAAAAGACCACCA................................................................................... 20 2 20 0.05 1 1 0 0 0 0
................................................................................................................................................AACAAAAAAGAAAAAAGACCACC.................................................................................... 23 3 20 0.05 1 1 0 0 0 0
................................................................................................................................................AAAAAAAAAAGAAAAAAGCCAC..................................................................................... 22 2 20 0.05 1 1 0 0 0 0
....................................................................................................................................................AAAACAAAAAAAGACCACCA................................................................................... 20 2 20 0.05 1 1 0 0 0 0
......................................................................................................................................................AAAAAAAAAAGACCACCAAT................................................................................. 20 2 20 0.05 1 0 0 0 0 1
...................................................................................................................................................AAAAAAAAAAAAAAGCCACC.................................................................................... 20 1 20 0.05 1 1 0 0 0 0
..................................................................................................................................................AAAAACAAAAAAAAGACCACC.................................................................................... 21 2 20 0.05 1 1 0 0 0 0
....................................................................................................................................................AAAAAAAAATAAGACCACCA................................................................................... 20 2 20 0.05 1 1 0 0 0 0
...................................................................................................................................................AAAAAAAGAAAAAGACCACC.................................................................................... 20 2 20 0.05 1 1 0 0 0 0
...................TGAGAATAAGTGGGAGAT...................................................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
.................................................................................................................................................AGAAAAAAGAAAAAAGACCACC.................................................................................... 22 3 20 0.05 1 1 0 0 0 0
................................................................................................................................................AGAAAAAAAGAAAAAAGACCACC.................................................................................... 23 3 20 0.05 1 1 0 0 0 0
...................................................................................................................................................AAAAAAAAAAACAAACCACC.................................................................................... 20 1 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ACAACGCCTTGATGCTACTACTCTTCTTCACCCTGTACTAAACGCTAGTTCATTCATCAGTCCGGATGATTGACAGTGAGCAAAAACAAAGGGTAAGTCTATTCGTTAATATTACCGATAAAATACCTAGGGAATATATTACGTTTTTTTTTTTTTTTTTTTGGTGGTAAGTATAGAGTTGACCTTGAAGGACACCAATATAAAAATAATATAAAAAAATTCAAGGGGGTCGAACCGTGAAACCTTAGAGA
**************************************************((.(((((......))))).)).........(((((((...((((..(((((.((..........))))))).))))..............)))))))............((((((........(((.....))).......))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
 V105
male body		 M044
female body
.....................................................................................................................................................TTTTTTTTCTTTAGGTGGTAA................................................................................. 21 2 5 0.20 1 1 0 0 0 0
........................................................................ACAGTTAGCAAAAACACAGGA.............................................................................................................................................................. 21 3 6 0.17 1 0 0 1 0 0
.............................................................................................................................................................ATTTTGGTGGTCAGTATA............................................................................ 18 2 6 0.17 1 0 1 0 0 0
.......................................................................GACAGTTAGCAATAACACAG................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 1 0
...............................................................................................................................................TTTTTTTTTTTTTTTTTTTGGTG..................................................................................... 23 0 8 0.13 1 1 0 0 0 0
................................................................................................................................................................................................CACCAATAAAAAGATAATA........................................ 19 2 11 0.09 1 1 0 0 0 0
.....................................................................................................TTAGTTAACATTCCCGATAAA................................................................................................................................. 21 3 11 0.09 1 1 0 0 0 0
......................................................................................................................................................TTTTTTCTTCTTGGTGCTAAG................................................................................ 21 3 13 0.08 1 0 0 0 0 1
........................................................................ACAGTGAGGAATAACACAG................................................................................................................................................................ 19 3 18 0.06 1 0 1 0 0 0
.................................................................................................................................................TTTTTTTTTTTTTTTTTGG....................................................................................... 19 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:4989947-4990197 - dan_2422 TGTTGCGGAACTACGATGATGAGAAGAAGTGGGACATGATTTGCGATCAAGTAAGTAGTCAGGCCTA--------------CTAACT--GTCACTCGTTTTTGTTTCCCATTCAGATAAGCAATTATAATGGCTATTTTATGGATC-CCTTATA--------TAATGCAAAAAAAAAAAAAAAAAAACCACCATTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTCAACTGGAACTTCCTGTGGTTATATTTTTATTATATTTTTT----------T--------------------------------------------------------------------------------------------------------AAGTTCCCCCAGCTTGGCACTTTGG-----------------------AAT--CTCT
droBip1 scf7180000396371:320881-321057 - TGTTGCGAAACTACGATGATGAGAAGAAGTGGGACATGATTTGCGATCAAGTAAGTGGTTTAGTCTAGTCTAGAGGATAAGCTAACCTAGT--------------------CTAGATGAGCTATTCTTGAGGCTATTTTATG-------------------------------------------------------------------GAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTTTATTTAAAATTAGG---------------------------------------------------------------------------------------------------------CTTCCCAGCTTGGCACTTTGG-----------------------CATGTCTCT
droKik1 scf7180000302686:612693-612940 + TACTTCGTAACTACGATGACGAGAAGAAATGGGACATGATATGCGATCAAGTAAGTTATTT--------------------------------------------------------------------------------T-------------------------------------------------------------------AAATATTTTCTCTTATTTTAAATAATATTTTTAAAGT---TATAAATATGAGTACATGTACAGGGAATTCGTTACATAAATTATTATTGCGATTTAATTATTTAT-----------------------------TTAGCTAAAAACTGTTTGCTATCAAAGTCTGAACTTCCTGT------------------TCCTGT----------T-----GT-----TTTC-------------------------------------------------------------------------------------------CATTCCCATCTCAGCACTTTGG-----------------------ACT-GCTCT
droFic1 scf7180000453784:377412-377671 + TACTCCGTAACTACGATGACGAGAAGAAATGGGACATGATATGTGATCAAGTAAGTAGTGG------------------------------AA----------------------------------------------ATC-------------------------------------------------------------------AAATTTTTTTTT------------TTTTAATTGAAACA------AATATATTTAG--------------------TTTTTTTATCAAGACGGTTTTATTAAATATTTATTCAAAACACTCACACATTTACAAGTTTTGCTAAAAATATTTTGCTATCGACTTCCGAACTTCCTGGGTGT--------------TTTTGC----------------------------------------------------------------------------------------------------AGATTAAACTCTGTTTCTTTTTCCCAGTTGTGTACTTTGG-----------------------ACC--CTTT
droEle1 scf7180000491255:2513369-2513539 + TACTCCGAAACTATGATGACGAAAAGAAATGGGACATGGTATGCGATCAAGTAAGTAAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------AAATCAT------------TTGTCTTT----CATACTTAAACTCAATTTC--------------------------------------------ATCGA---------------------------------------------------------------------------------------------TTTAGTTAG---------------------------------------------------------------------------------------------AGATTATAAGCTATTA--TAAGTTTAAGTTCCTAAAAAAGTCCCTTTTAAAATTAA-------AAA-ACAAA
droRho1 scf7180000760202:31550-31606 - TACTCCGTAACTATGATGACGAGAAGAAATGGGACATGATATGCGATCAAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302428:5854278-5854336 - TGCTTCGCAACTACGATGACGAGAAGAAATGGGACATGATATGTGATCAAGTAAGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415261:657624-657682 + TACTTCGTAACTACGATGACGAGAAGAAATGGGACATGATATGTGATCAAGTAAGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409456:243165-243257 + AAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTACTATCAAAGTTTGAACTTCCTGCGAAC-------------ATTTTGC----------------------------------------------------------------------------------------------------TGATTAAAAGCAGTTT--TATTCCCAGTCGAGTACTTCGG-----------------------ACC--CTTT
dm3 chr3L:14054562-14054618 + TGCTGCGGAACTATGATGACGAGAAGAAATGGGACATGATATGCGATCAAGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3l:13727330-13727386 + TGCTGCGGAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_0:6202236-6202292 + TGCTGCGGAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:9441534-9441625 + TTATACAATAAAAAAAAAACAAAAAAAAAAATGGTATGTATAGTATATAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAAAT---TCT--------------------------------------------------------------------------------------------------------------------------------------TTATATATATACTATATATTTA----------T--------------------------------------------------------------------------------------------------------ATG-----------------------------------------------------T
droEre2 scaffold_4784:10273886-10274003 + GGCTCTTTTCTCA-----------------------------------------------------------------------------------------------------------------------------------TCCCCTTTTCTGAATTGGATATCCAGAAAAAAAAATTAAATCAGCACTATACATTTTTCAAATTGTAATGATCTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATACTTAAATTAAATATATT----------T--------------------------------------------------------------------------------------------------------AAGT----------------------------------------------------T
dp5 XR_group6:4729844-4730100 + TGCTGCGTAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTGAGTGCC--------------------------------AT----------------------------------------------ATC-------------------------------------------------------------------GAATGGGTTTTC------------ATGCCTTTAAAGCGTGCATAAACATGATTAT--------------------------------------------ATTTG---------------------------------------------------------------------------------------------TTTGCTGAAAA--AGGCTGCTACCA---CCACTACCACCACTACT---ACTACTATCAGTGGCTTCCGTTCATAGATTTTAGCAGCTCTTTTGGACTCTGACCGACTCTCCCTTGATCGCTGGTCACAGGGGG---------------------TTGGCGATGGGATTGGCTCT
droPer2 scaffold_9:3029366-3029586 + TGCTGCGTAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTGAGTGCC--------------------------------AT----------------------------------------------ATC-------------------------------------------------------------------GAATGGGTTTTC------------ATGCCTTTAAAGCGTGCATAAACATGATTAT--------------------------------------------ATTTG---------------------------------------------------------------------------------------------TTTGCTGAAAA--AGGCTGCTACCACCACCACTACCACCACTACTACTACTACTATCAGCGGCTTCCGTTCATAGATTTCAGCAGCTCTTTTGGACTCTGAC--------------------------------------CG-----------------------ACT--CTCC
droWil2 scf2_1100000004511:1493009-1493069 - TCTTACGCAACTACGATGATGAGAAGAAATGGGACATGATATGCGATCAAGTAAGTTGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:18326463-18326520 + TCTTGCGCAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTAAGTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:19113649-19113706 + TGTTGCGTAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTAAGTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:9318910-9318970 - TGTTGCGCAATTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTAAGTGGACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TGTTGCGGAACTACGATGATGAGAAGAAGTGGGACATGATTTGCGATCAAGTAAGTAGTCAGGCCTA--------------CTAACT--GTCACTCGTTTTTGTTTCCCATTCAGATAAGCAATTATAATGGCTATTTTATGGATC-CCTTATA--------TAATGCAAAAAAAAAAAAAAAAAAACCACCATTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTCAACTGGAACTTCCTGTGGTTATATTTTTATTATATTTTTT----------T--------------------------------------------------------------------------------------------------------AAGTTCCCCCAGCTTGGCACTTTGG-----------------------AAT--CTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................AGAAGAAGTGGGACATGATTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
............ACGATGATGAGAAGAAGTGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.............................................................................................................................................................................AAAAAAAAAAAAAACCACCA...................................................................................................................................................................................................................................................................................................................................................................................................2020.501010000
..........................................................................................................................................................................AAAAAAAAAAAAAAAAACC.......................................................................................................................................................................................................................................................................................................................................................................................................19200.459090000
.............................................................................................................................................................................AAAAAAAAAAAAAACCACC....................................................................................................................................................................................................................................................................................................................................................................................................1940.251010000
............................................................................................................................................................................AAAAAAAAAAAAAAACCAC.....................................................................................................................................................................................................................................................................................................................................................................................................19100.101010000
droBip1
TGTTGCGAAACTACGATGATGAGAAGAAGTGGGACATGATTTGCGATCAAGTAAGTGGTTTAGTCTAGTCTAGAGGATAAGCTAACCTAGT--------------------CTAGATGAGCTATTCTTGAGGCTATTTTATG-------------------------------------------------------------------GAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTTTATTTAAAATTAGG---------------------------------------------------------------------------------------------------------CTTCCCAGCTTGGCACTTTGG-----------------------CATGTCTCTSizeHit CountTotal NormTotal
No Reads
droKik1
TACTTCGTAACTACGATGACGAGAAGAAATGGGACATGATATGCGATCAAGTAAGTTATTT--------------------------------------------------------------------------------T-------------------------------------------------------------------AAATATTTTCTCTTATTTTAAATAATATTTTTAAAGT---TATAAATATGAGTACATGTACAGGGAATTCGTTACATAAATTATTATTGCGATTTAATTATTTAT-----------------------------TTAGCTAAAAACTGTTTGCTATCAAAGTCTGAACTTCCTGT------------------TCCTGT----------T-----GT-----TTTC-------------------------------------------------------------------------------------------CATTCCCATCTCAGCACTTTGG-----------------------ACT-GCTCTSizeHit CountTotal NormTotal
No Reads
droFic1
TACTCCGTAACTACGATGACGAGAAGAAATGGGACATGATATGTGATCAAGTAAGTAGTGG------------------------------AA----------------------------------------------ATC-------------------------------------------------------------------AAATTTTTTTTT------------TTTTAATTGAAACA------AATATATTTAG--------------------TTTTTTTATCAAGACGGTTTTATTAAATATTTATTCAAAACACTCACACATTTACAAGTTTTGCTAAAAATATTTTGCTATCGACTTCCGAACTTCCTGGGTGT--------------TTTTGC----------------------------------------------------------------------------------------------------AGATTAAACTCTGTTTCTTTTTCCCAGTTGTGTACTTTGG-----------------------ACC--CTTTSizeHit CountTotal NormTotal
No Reads
droEle1
TACTCCGAAACTATGATGACGAAAAGAAATGGGACATGGTATGCGATCAAGTAAGTAAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------AAATCAT------------TTGTCTTT----CATACTTAAACTCAATTTC--------------------------------------------ATCGA---------------------------------------------------------------------------------------------TTTAGTTAG---------------------------------------------------------------------------------------------AGATTATAAGCTATTA--TAAGTTTAAGTTCCTAAAAAAGTCCCTTTTAAAATTAA-------AAA-ACAAASizeHit CountTotal NormTotal
No Reads
droRho1
TACTCCGTAACTATGATGACGAGAAGAAATGGGACATGATATGCGATCAAGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGCTTCGCAACTACGATGACGAGAAGAAATGGGACATGATATGTGATCAAGTAAGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TACTTCGTAACTACGATGACGAGAAGAAATGGGACATGATATGTGATCAAGTAAGTAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTACTATCAAAGTTTGAACTTCCTGCGAAC-------------ATTTTGC----------------------------------------------------------------------------------------------------TGATTAAAAGCAGTTT--TATTCCCAGTCGAGTACTTCGG-----------------------ACC--CTTTSizeHit CountTotal NormTotal
No Reads
dm3
TGCTGCGGAACTATGATGACGAGAAGAAATGGGACATGATATGCGATCAAGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...TGCGGAACTATGATGACGAGAAGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.00100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....GCGGAACTATGATGACGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AATGGGACATGATATGCGATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GACATGATATGCGATCAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GATGACGAGAAGAAATGGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GACGAGAAGAAATGGGACATGATATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
............................ATGGGACATGATATGCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.............................TGGGACATGATATGCGATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............GATGACGAGAAGAAATGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GAAATGGGACATGATATGCGATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......GAACTATGATGACGAGAAGAAATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGACGAGAAGAAATGGGACATGATATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GGAACTATGATGACGAGAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....GCGGAACTATGATGACGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AAATGGGACATGATATGCGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ACGAGAAGAAATGGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GAAATGGGACATGATATGCGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.............TGATGACGAGAAGAAATGGGACATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................GAAGAAATGGGACATGATATGCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................TGACGAGAAGAAATGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AATGGGACATGATATGCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATGATGACGAGAAGAAATGGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TATGATGACGAGAAGAAATGGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.GCTGCGGAACTATGATGACGAGAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GGAACTATGATGACGAGAAGAAATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....GCGGAACTATGATGACGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGCGGAACTATGATGACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AATGGGACATGATATGCGATCAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
TGCTGCGGAACTATGATGACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TATGATGACGAGAAGAAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TATGATGACGAGAAGAAATGGGACAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACTATGATGACGAGAAGAAATGGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............ATGATGACGAGAAGAAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATGATGACGAGAAGAAATGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AAATGGGACATGATATGCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........................AGAAATGGGACATGATACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.0610000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGCTGCGGAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
TGCTGCGGAACTACGATGACGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000200000000
.................GACGAGAAGAAGTGGGACATGATAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
...TGCGGAACTACGATGACGAGAAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
......................GAAGAAGTGGGACATGATATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
droSec2
TGCTGCGGAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........TACGATGACGAGAAGAAGTGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
droYak3
TTATACAATAAAAAAAAAACAAAAAAAAAAATGGTATGTATAGTATATAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAAAT---TCT--------------------------------------------------------------------------------------------------------------------------------------TTATATATATACTATATATTTA----------T--------------------------------------------------------------------------------------------------------ATG-----------------------------------------------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GGCTCTTTTCTCA-----------------------------------------------------------------------------------------------------------------------------------TCCCCTTTTCTGAATTGGATATCCAGAAAAAAAAATTAAATCAGCACTATACATTTTTCAAATTGTAATGATCTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATACTTAAATTAAATATATT----------T--------------------------------------------------------------------------------------------------------AAGT----------------------------------------------------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
TGCTGCGTAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTGAGTGCC--------------------------------AT----------------------------------------------ATC-------------------------------------------------------------------GAATGGGTTTTC------------ATGCCTTTAAAGCGTGCATAAACATGATTAT--------------------------------------------ATTTG---------------------------------------------------------------------------------------------TTTGCTGAAAA--AGGCTGCTACCA---CCACTACCACCACTACT---ACTACTATCAGTGGCTTCCGTTCATAGATTTTAGCAGCTCTTTTGGACTCTGACCGACTCTCCCTTGATCGCTGGTCACAGGGGG---------------------TTGGCGATGGGATTGGCTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................GTGGGACATGATATGCGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
droPer2
TGCTGCGTAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTGAGTGCC--------------------------------AT----------------------------------------------ATC-------------------------------------------------------------------GAATGGGTTTTC------------ATGCCTTTAAAGCGTGCATAAACATGATTAT--------------------------------------------ATTTG---------------------------------------------------------------------------------------------TTTGCTGAAAA--AGGCTGCTACCACCACCACTACCACCACTACTACTACTACTATCAGCGGCTTCCGTTCATAGATTTCAGCAGCTCTTTTGGACTCTGAC--------------------------------------CG-----------------------ACT--CTCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............GATGACGAGAAGAAGTGGGACATGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droWil2
TCTTACGCAACTACGATGATGAGAAGAAATGGGACATGATATGCGATCAAGTAAGTTGTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................GAAGAAATGGGACATGATATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200200
........................AGAAATGGGACATGATATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
....................GAGAAGAAATGGGACATGATATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
droVir3
TCTTGCGCAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTAAGTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........AACTACGATGACGAGAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000100001000000000000000000000000000000000000000000
........AACTACGATGACGAGAAGAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
..TTGCGCAACTACGATGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
..........CTACGATGACGAGAAGAAGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
...TGCGCAACTACGATGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000010000000000000000000000000000000000
......GCAACTACGATGACGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
droMoj3
TGTTGCGTAACTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTAAGTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGTTGCGCAATTACGATGACGAGAAGAAGTGGGACATGATATGCGATCAAGTAAGTGGACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................AGAAGAAGTGGGACATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
............ACGATGACGAGAAGAAGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110

Generated: 05/18/2015 at 04:36 AM