ID:

dan_242

 Coordinate:

scaffold_12903:554769-554834 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.2 -26.8 -26.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAGTCATCATAGTGGTTTTTTTCAGTGTTTTTTTTAAGATAATAATTTTGTGAGAGGTCTATCCTGACGCATGTTTTATTTTTTTGTTCATCCTGCTTCAGGTTACACCTTCTCAAAGAGTTTTTATCAAAGCCTCGTTTATTTATATTTTAATTTTAAAATGAAA

***********************************..(((((.((((((.((((((((.((.(((((.(((......((......))......))).))))).)).))).))))).)))))).)))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total M044

female body

 V105

male body		 V106

head

 V055

head

 M058

embryo

 V039

embryo
..................................................TGAGAGGTCTATCCTGACGCA............................................................................................... 21 0 1 40.00 40 18 15 4 2 1 0
..................................................TGAGAGGTCTATCCTGACGCATG............................................................................................. 23 0 1 31.00 31 19 9 1 1 1 0
.............................................................................................TGCTTCAGGTTACACCTTCTCA................................................... 22 0 1 17.00 17 15 1 0 0 0 1
..................................................TGAGAGGTCTATCCTGACGCAT.............................................................................................. 22 0 1 14.00 14 2 7 4 1 0 0
..................................................TGAGAGGTCTATCCTGACGC................................................................................................ 20 0 1 5.00 5 2 0 1 2 0 0
.............................................................................................TGCTTCAGGTTACACCTTCTCAA.................................................. 23 0 1 5.00 5 5 0 0 0 0 0
...............................................................................................CTTCAGGTTACACCTTCTCAAA................................................. 22 0 1 5.00 5 3 0 2 0 0 0
....................................................AGAGGTCTATCCTGACGCATG............................................................................................. 21 0 1 4.00 4 4 0 0 0 0 0
...............................................................................................CTTCAGGTTACACCTTCTCA................................................... 20 0 1 3.00 3 2 0 0 0 1 0
.............................................................................................TGCTTCAGGTTACACCTTCTCAAA................................................. 24 0 1 3.00 3 3 0 0 0 0 0
...............................................................................................CTTCAGGTTACACCTTCTCAA.................................................. 21 0 1 3.00 3 3 0 0 0 0 0
...................................................GAGAGGTCTATCCTGACGCA............................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0
..................................................TGAGAGGTCTATCCTGACGCATGT............................................................................................ 24 0 1 2.00 2 1 1 0 0 0 0
.............................................................................................TGCTTCAGGTTACACCTTCTC.................................................... 21 0 1 2.00 2 2 0 0 0 0 0
..................................................TGAGAGGTCTATCCTGACG................................................................................................. 19 0 1 2.00 2 1 1 0 0 0 0
..................................................TGAGAGGTCTATCCTGGCGCA............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................GCTTCAGGTTACACCTTCTCT................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TGAGAGGTCTATCCTGACGT................................................................................................ 20 1 1 1.00 1 0 0 0 1 0 0
.............................................................................................TGCTTCAGCTTACACCTTCTCA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTAGAGGTCTATCCTGACGCA............................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0
..............................................................................................GCTTCAGGTTACACCTTCTCAAA................................................. 23 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................CCTGCTTCAGGTTACACCTTCTC.................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..................................................TGAGAGGTATATCCTGACGCA............................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TGAGAGCTCTATCCTAACGCA............................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..................................................TGAGAGGTCGATGCTGACGCCTG............................................................................................. 23 3 1 1.00 1 0 0 0 1 0 0
.............................................................................................TACTTCAGGTTACACCTTCTCA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TGAGAGGTCTATCCTGACGCATGA............................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..................................................TGAGAGGTCTATCCTGACGCAA.............................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................CGAGAGGTCTATCCTGACGCA............................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................TGGTTCAGGTTATACCTTCTCA................................................... 22 2 1 1.00 1 0 0 0 0 0 1
..................................................TGAGAGGTCTATACTGACGCATG............................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..................................................TGAGAGGTGTATCCTGACGCATG............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGAGAGGTCTATCCTGACGCATT............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TGAGGGGTCTATCCTGACGCATG............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................GCTTCAGGTTACACCTTCT..................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..................................................TGAGAGGTATATCCTGACGCATG............................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TCAGAGGTCTATCCTGACGCA............................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................GCTTCAGGTTACACCTTCTCA................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................GAGGTCTATCCTGACGCATGT............................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
..................................................TGAGAGATCTAGCTTGACGCA............................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0

Anti-sense strand reads

GTCAGTAGTATCACCAAAAAAAGTCACAAAAAAAATTCTATTATTAAAACACTCTCCAGATAGGACTGCGTACAAAATAAAAAAACAAGTAGGACGAAGTCCAATGTGGAAGAGTTTCTCAAAAATAGTTTCGGAGCAAATAAATATAAAATTAAAATTTTACTTT

************************************..(((((.((((((.((((((((.((.(((((.(((......((......))......))).))))).)).))).))))).)))))).)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total V039

embryo

 M058

embryo

 V105

male body
..CAGTAGTTTCACCAAAAAAA................................................................................................................................................ 20 1 1 1.00 1 1 0 0
...........CACCAAAAAAAGTCCCAACAAAA.................................................................................................................................... 23 2 2 0.50 1 1 0 0
..CAGTAGTTTCAACAAAAAAA................................................................................................................................................ 20 2 3 0.33 1 1 0 0
..........CCACCATAAAAAGTCACAAA........................................................................................................................................ 20 2 3 0.33 1 0 1 0
............ACCAAAAAAACTCACAAAAA...................................................................................................................................... 20 1 3 0.33 1 0 1 0
...........................AAAAAAAATTCTATCATTA........................................................................................................................ 19 1 4 0.25 1 0 1 0
............ACCAAAAGAAGTCACAACAA...................................................................................................................................... 20 2 5 0.20 1 0 1 0
.........................................................................................TAGGAAGGAGTCCAAGGTGG......................................................... 20 3 8 0.13 1 0 0 1
..CAGTGGTTTCACCAAGAAAA................................................................................................................................................ 20 3 9 0.11 1 1 0 0
.............CCAAAGAAAGCCACAAAAAAAAC.................................................................................................................................. 23 3 11 0.09 1 0 1 0
................AAAAAAGTCACCAAAAAA.................................................................................................................................... 18 1 12 0.08 1 0 1 0
..............CAAAAAAAGTCACAAAAAC..................................................................................................................................... 19 1 12 0.08 1 0 1 0
.............CCACAAAAACTCACAAAAAAA.................................................................................................................................... 21 2 14 0.07 1 0 1 0
.............CCAAAAAAAATCACAAAAA...................................................................................................................................... 19 1 16 0.06 1 0 1 0
........................................................................................CTAGGAAGGAGTCCAATG............................................................ 18 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_12903:554719-554884 + dan_242 confident CAGTCATCATAGTGGTTTTTTTCAGTGTTTTTTTTAAGATAATAATTTTGTGAGAGGTCTATCCTGACGCATGTTTTATTTTTTTGTTCATCCTGCTTCAGGTTACACCTTCTCAAAGAGTTTTTATCAAAGCCTCGTTTATTTATATTTTAATTTTAAAATGAAA
droBip1 scf7180000395912:23739-23752 + TAACCATCATAATG--------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CAGTCATCATAGTGGTTTTTTTCAGTGTTTTTTTTAAGATAATAATTTTGTGAGAGGTCTATCCTGACGCATGTTTTATTTTTTTGTTCATCCTGCTTCAGGTTACACCTTCTCAAAGAGTTTTTATCAAAGCCTCGTTTATTTATATTTTAATTTTAAAATGAAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................TGAGAGGTCTATCCTGACGCA...............................................................................................21140.004018102154
..................................................TGAGAGGTCTATCCTGACGCATG.............................................................................................23131.00311910191
.............................................................................................TGCTTCAGGTTACACCTTCTCA...................................................22117.00171501010
..................................................TGAGAGGTCTATCCTGACGCAT..............................................................................................22114.0014200174
..................................................TGAGAGGTCTATCCTGACGC................................................................................................2015.005200201
.............................................................................................TGCTTCAGGTTACACCTTCTCAA..................................................2315.005500000
...............................................................................................CTTCAGGTTACACCTTCTCAAA.................................................2215.005300002
....................................................AGAGGTCTATCCTGACGCATG.............................................................................................2114.004400000
...............................................................................................CTTCAGGTTACACCTTCTCA...................................................2013.003210000
.............................................................................................TGCTTCAGGTTACACCTTCTCAAA.................................................2413.003300000
...............................................................................................CTTCAGGTTACACCTTCTCAA..................................................2113.003300000
...................................................GAGAGGTCTATCCTGACGCA...............................................................................................2013.003300000
..................................................TGAGAGGTCTATCCTGACGCATGT............................................................................................2412.002100010
.............................................................................................TGCTTCAGGTTACACCTTCTC....................................................2112.002200000
..................................................TGAGAGGTCTATCCTGACG.................................................................................................1912.002100010
..............................................................................................GCTTCAGGTTACACCTTCTCT...................................................2111.001100000
..................................................TGAGAGGTCTATCCTGACGT................................................................................................2011.001000100
..............................................................................................GCTTCAGGTTACACCTTCTCAAA.................................................2311.001100000
...........................................................................................CCTGCTTCAGGTTACACCTTCTC....................................................2311.001100000
..................................................TGAGAGGTCTATCCTGACGCATGA............................................................................................2411.001100000
..................................................TGAGAGGTCTATCCTGACGCAA..............................................................................................2211.001000010
..................................................TGAGAGGTCTATCCTGACGCATT.............................................................................................2311.001100000
..............................................................................................GCTTCAGGTTACACCTTCT.....................................................1911.001100000
..............................................................................................GCTTCAGGTTACACCTTCTCA...................................................2111.001100000
.....................................................GAGGTCTATCCTGACGCATGT............................................................................................2111.001000010
droBip1
TAACCATCATAATG--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:28 PM