ID:

dan_24

 Coordinate:

scaffold_12916:11085121-11085181 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.6

Flybase annnotation

Antisense to intron [Dana\GF14310-in]; utr5 [utr5_plus_811]

No Repeatable elements found

Sense Strand Reads

CAAATACGCTCGACTTTGGGCCCAACCACCTGGCCGAGGGCACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCAAATAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCCCAAGCAACAATGATAACAGTGAGCTCAAGTTATGCCGGA

***********************************..(((((..((((...((((.(((.((((...((((((............))))))...)))).))).))))...))))..)))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total V105

male body		 V106

head

 V055

head

 M044

female body

 M058

embryo
..................................................ATAAGGTAGAGAAAATAATGTCT........................................................................................ 23 0 1 1274.00 1274 1118 122 26 8 0
..................................................ATAAGGTAGAGAAAATAATGTC......................................................................................... 22 0 1 1238.00 1238 1110 44 57 26 1
..................................................ATAAGGTAGAGAAAATAATGT.......................................................................................... 21 0 1 170.00 170 152 6 8 4 0
..................................................ATAAGGTAGAGAAAATAATG........................................................................................... 20 0 1 79.00 79 68 4 3 4 0
..................................................ATAAGGTAGAGAAAATAATGACT........................................................................................ 23 1 1 17.00 17 17 0 0 0 0
........................................................................................CATCAATTTCCCTAGCTTGCAT................................................... 22 0 1 11.00 11 8 3 0 0 0
..................................................ATAAGGTAGAGAAAATAATGAC......................................................................................... 22 1 1 11.00 11 11 0 0 0 0
..................................................ATAAGGTATAGAAAATAATGTC......................................................................................... 22 1 1 10.00 10 9 1 0 0 0
..................................................ATAAGGGAGAGAAAATAATGTC......................................................................................... 22 1 1 9.00 9 8 0 1 0 0
..................................................ATAAGGTAGAGCAAATAATGTCT........................................................................................ 23 1 1 8.00 8 6 1 1 0 0
..................................................ATAAGGTAGAGAAAATAATGCC......................................................................................... 22 1 1 8.00 8 8 0 0 0 0
..................................................ATAAGGTAGAGGAAATAATGTC......................................................................................... 22 1 1 7.00 7 7 0 0 0 0
..................................................ATAAGGTAGAGAAAATAATGCCT........................................................................................ 23 1 1 6.00 6 6 0 0 0 0
..................................................ATAAGGTAGAGAGAATAATGTC......................................................................................... 22 1 1 6.00 6 6 0 0 0 0
..................................................ATAAGGTAGAGAAAATAAT............................................................................................ 19 0 1 6.00 6 4 2 0 0 0
..................................................ATAAGGTAGAGTAAATAATGTC......................................................................................... 22 1 1 6.00 6 5 1 0 0 0
..................................................ATAAGGTAGAGAAGATAATGTCT........................................................................................ 23 1 1 5.00 5 5 0 0 0 0
..................................................ATAAGGTAGATAAAATAATGTCT........................................................................................ 23 1 1 5.00 5 5 0 0 0 0
..................................................ATAAGGTAGATAAAATAATGTC......................................................................................... 22 1 1 5.00 5 5 0 0 0 0
..................................................ATAAGGTAGAGAAAATAATGGC......................................................................................... 22 1 1 5.00 5 5 0 0 0 0
..................................................ATAAGGTAGAGCAAATAATGTC......................................................................................... 22 1 1 5.00 5 4 0 1 0 0
..................................................ATAAGGTATAGAAAATAATGTCT........................................................................................ 23 1 1 4.00 4 1 2 0 1 0
..................................................ATAAGGTAGAGGAAATAATGTCT........................................................................................ 23 1 1 4.00 4 4 0 0 0 0
..................................................ATAAGGAAGAGAAAATAATGTC......................................................................................... 22 1 1 4.00 4 3 0 1 0 0
..................................................ATAAGGTAGAGAAAACAATGTC......................................................................................... 22 1 1 4.00 4 4 0 0 0 0
...................................................TAAGGTAGAGAAAATAATGTC......................................................................................... 21 0 1 4.00 4 0 0 0 4 0
..................................................ATAAGGCAGAGAAAATAATGTC......................................................................................... 22 1 1 4.00 4 3 0 1 0 0
..................................................ATAATGTAGAGAAAATAATGTC......................................................................................... 22 1 1 4.00 4 4 0 0 0 0
..................................................ATAATGTAGAGAAAATAATGTCT........................................................................................ 23 1 1 4.00 4 3 1 0 0 0
..................................................ATAAGGTAGAGAAAATAATGTCC........................................................................................ 23 1 1 3.00 3 2 0 0 0 1
..................................................ATAAGGTAGAGAAAAAAATGTC......................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGAAAATAATGTCA........................................................................................ 23 1 1 3.00 3 1 1 1 0 0
..................................................ATAAGGTAGAGAAAATAATGGCT........................................................................................ 23 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGAAAATAATTTCT........................................................................................ 23 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGAACATAATGTC......................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGTAAATAATGTCT........................................................................................ 23 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGGAGAGAAAATAATGTCT........................................................................................ 23 1 1 3.00 3 1 0 2 0 0
..................................................ATAAGGTAGAGAAAATAATGTT......................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGATAATAATGTC......................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGAAGATAATGTC......................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAAAAAATAATGTCT........................................................................................ 23 1 1 3.00 3 2 1 0 0 0
..................................................ACAAGGTAGAGAAAATAATGTCT........................................................................................ 23 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGAAAACAATGTCT........................................................................................ 23 1 1 3.00 3 3 0 0 0 0
..................................................ATAAGGTAGAGAAAAGAATGTCT........................................................................................ 23 1 1 3.00 3 3 0 0 0 0
..................................................AGAAGGTAGAGAAAATAATGTCT........................................................................................ 23 1 1 3.00 3 3 0 0 0 0
.................................................TATAAGGTAGAGAAAATAATGT.......................................................................................... 22 0 1 2.00 2 2 0 0 0 0
..................................................AAAAGGTAGAGAAAATAATGTC......................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGATAATAATGTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGAAAGTAATGTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
...................................................TAAGGTAGAGAAAATAATGTCT........................................................................................ 22 0 1 2.00 2 1 0 0 1 0
..................................................ATAAGGTAGAGAAAATAATTTC......................................................................................... 22 1 1 2.00 2 1 0 0 1 0
..................................................ATAAGGTAGAGACAATAATGT.......................................................................................... 21 1 1 2.00 2 1 0 1 0 0
..................................................ATAAGGTAGAGAAAAAAATGTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
...................................................ATAGGTAGAGAAAATAATGTCT........................................................................................ 22 2 1 2.00 2 1 1 0 0 0
..................................................ATAAGGTAAAGAAAATAATGTC......................................................................................... 22 1 1 2.00 2 1 0 0 1 0
..................................................ATAAGTTAGAGAAAATAATGTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGACAAAATAATGTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGAAAATAATGTCTTTT..................................................................................... 26 2 1 2.00 2 1 0 0 1 0
..................................................ATAAGGCAGAGAAAATAATGTCT........................................................................................ 23 1 1 2.00 2 1 1 0 0 0
..................................................ATAAGGTGGAGAAAATAATGTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGACAATAATGTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTTGAGAAAATAATGTCT........................................................................................ 23 1 1 2.00 2 1 0 1 0 0
..................................................AAAAGGTAGAGAAAATAATGTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAAAAAATAATGTC......................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGAACATAATGTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGAAAATAATGA.......................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGAGAATAATGTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGAAAATAATGTAT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGAAGAGAAAATAATGTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGGTAGAGAAAATAATCTCT........................................................................................ 23 1 1 2.00 2 2 0 0 0 0
..................................................ATAAGATAGAGAAAATAATGTC......................................................................................... 22 1 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGAGAAAATAATGTCTT....................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAAGAATGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................ATCAATTTTCCTAGCTTGCATT.................................................. 22 1 1 1.00 1 0 0 0 1 0
..................................................ATAAGGTAGAGATAATAATGT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAATATACTGTCT........................................................................................ 23 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGGGTAAATAATGTC......................................................................................... 22 2 1 1.00 1 0 0 1 0 0
..................................................AGAAGGTAGAGAAAATAATGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ACAAGGTAGAGAAAATAATGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAATAATGTAA........................................................................................ 23 2 1 1.00 1 1 0 0 0 0
........................................................................................CATCAATTTCCCTAGCTTGCATT.................................................. 23 0 1 1.00 1 0 0 1 0 0
..................................................TTAAGGTAGAGAAAATAATGTC......................................................................................... 22 1 1 1.00 1 0 0 0 1 0
..................................................ATAAGGTAGTGCAAATAATGTC......................................................................................... 22 2 1 1.00 1 0 0 1 0 0
..................................................AGAAGGTAGAGAAAATAATG........................................................................................... 20 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAATAAGGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAATAATCT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................CAAAGGTAGAGAAAATAATGTC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAATAACGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAGATAATG........................................................................................... 20 1 1 1.00 1 1 0 0 0 0
..................................................ATCAGGTAGAGAAAATAATGTCT........................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTATAGAAAATAATGGC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAATAGTGT.......................................................................................... 21 1 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGAGAAAATAATGTCTTT...................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTGTAGAAAATAATGTC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGGAGAGAAAATATTGTC......................................................................................... 22 2 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGAGGAAATAGTGTC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0
........................................................................................CATCAATTTCCCTAGCTTGCA.................................................... 21 0 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAGATAGTGTC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAATGATGTC......................................................................................... 22 1 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTATAGAAAATAATGAC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0
.........................................................................................ATCAATTTCCCTAGCTTGCAT................................................... 21 0 1 1.00 1 1 0 0 0 0
..................................................GTAAGGTAGAGAAAATAATGTCT........................................................................................ 23 1 1 1.00 1 1 0 0 0 0
.................................................CATGAGGTAGAGAAAATAATGTCT........................................................................................ 24 2 1 1.00 1 1 0 0 0 0
.......................................................................................ACATCAATTTCCCTAGCTTGCAT................................................... 23 0 1 1.00 1 1 0 0 0 0
..................................................AAAAGGTAGAGAAAATAATGT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAATAATGG.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAAAAAGTAATGTC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAAGAAT............................................................................................ 19 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGCAAATAATGT.......................................................................................... 21 1 1 1.00 1 0 0 1 0 0
.......................................................................................ACATCAATTTCCCTAGCTTGCA.................................................... 22 0 1 1.00 1 0 0 0 1 0
..................................................ATAAGGTAGAGTAAATAATGT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGACAAAATAATGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAAAAAATAATGT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................GTAAGGTAGACAAAATAATGTCT........................................................................................ 23 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAGATAATGACT........................................................................................ 23 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTCGAGAAAATAATGTCT........................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGAAGAGAAAACAATGTC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGGGAAAATAATGT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGACCATAATGTCT........................................................................................ 23 2 1 1.00 1 0 0 1 0 0
..................................................ATAAGGAAGAGAAAATAATGAC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGATAAAATAATGT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAATACTGTC......................................................................................... 22 1 1 1.00 1 0 1 0 0 0
..................................................ATAAGGTAGAGAAAATAACGGC......................................................................................... 22 2 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGAGAAAGTAATGT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGAAGAGAAAATAATGT.......................................................................................... 21 1 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGAGAAAATAATGTGT........................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTGGAGAAAATAATGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAACTAATGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGGAGAGAAAATAATGT.......................................................................................... 21 1 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGAGAAAATAAAGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAATGATGGCT........................................................................................ 23 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAAAGAAAATAATGACT........................................................................................ 23 2 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGAGAAAATA.............................................................................................. 17 0 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGAGAAAATAATGC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
....................................................AAGGTAGAGAAAATAATGTC......................................................................................... 20 0 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTAGCGAAAATAATGCCT........................................................................................ 23 2 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGAGAAAATAGTGTCT........................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGTGGAGAAAATAATGT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0
...................................................TAAGGTAGAGAAAATAATGT.......................................................................................... 20 0 1 1.00 1 0 0 0 1 0
..................................................ATAAGGTAGAGATAAAAATGTC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................ATACGGTAGAGAAAATAATGTCT........................................................................................ 23 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGAAGAGAAAATAATG........................................................................................... 20 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGATAGAGAAAATAATGTCT........................................................................................ 23 1 1 1.00 1 0 1 0 0 0
........................................................................................CATCAATTTCCCTAGCTTGC..................................................... 20 0 1 1.00 1 0 0 1 0 0
..................................................ATGAGGTAGAGAAAATAATGTCT........................................................................................ 23 1 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGCGAAAATAATGTCT........................................................................................ 23 1 1 1.00 1 0 0 1 0 0
..................................................ATAAGGTAGAGAAAGTAATGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................GTAAGGTAGAGAAAATAATGTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................ATAAGGCAGCGAAAATAATGT.......................................................................................... 21 2 2 0.50 1 0 0 1 0 0
..................................................ATAAGGCAGAGAAAATAATGT.......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..................................................ATAAGGTAGAAAAAATAATG........................................................................................... 20 1 4 0.50 2 2 0 0 0 0
..................................................ATAAGGTAGAGCCAATAATGT.......................................................................................... 21 2 2 0.50 1 0 0 1 0 0
..................................................ATAAGGTAGAGAAAATAGTC........................................................................................... 20 2 2 0.50 1 1 0 0 0 0
..................................................ATAAGGTAGAGCTAATAATG........................................................................................... 20 2 2 0.50 1 0 0 1 0 0
..................................................ATAGGGGAGAGAAAATAATGGC......................................................................................... 22 3 2 0.50 1 0 0 1 0 0
..................................................ATAAGGTAGAGGAAATAATGT.......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..................................................ATAAGGTAGAGCACATAATGT.......................................................................................... 21 2 2 0.50 1 0 0 1 0 0
..................................................ATAATGTAGAGAAAATAATG........................................................................................... 20 1 2 0.50 1 1 0 0 0 0
..................................................TTAAGGTAGCGAAAATAATG........................................................................................... 20 2 3 0.33 1 0 0 1 0 0
..................................................ATATGGTAGAGAAAATAATGC.......................................................................................... 21 2 4 0.25 1 0 0 1 0 0
..................................................ATAAGGTACAAAAAATAATGACT........................................................................................ 23 3 6 0.17 1 1 0 0 0 0
......................................................................................................................................ATAACACTGAGCTCGAGGT........ 19 3 18 0.06 1 0 0 0 1 0

Anti-sense strand reads

GTTTATGCGAGCTGAAACCCGGGTTGGTGGACCGGCTCCCGTGAGTTCGATATTCCATCTCTTTTATTACAGAAGCAGAGGTTTATCTGTAGTTAAAGGGATCGAACGTAAAACGGACGGGGGTTCGTTGTTACTATTGTCACTCGAGTTCAATACGGCCT

************************************..(((((..((((...((((.(((.((((...((((((............))))))...)))).))).))))...))))..)))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M044

female body
.....................................................TCCATCTCTTTCACAACAG......................................................................................... 19 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_12916:11085071-11085231 + dan_24 confident C-AAATACG-CTCGACTTT-------GGGCC--C------A----------ACCACCTGG-----C-----------CGAGGGC-ACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCAA-----------------ATAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CAAGCAACAATGATAACAGTGAG------------CTCAAGTTATGCCGGA
droBip1 scf7180000396572:742820-742992 + C-AAATACA-CACGACTTT-------GGGCC--C------A----------ACCACCTGG-----T-----------CGGGGGC-ACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTCCAA-----------------ATAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCT-CAAGCAACCATGATAATAATAAGCTCATCAGTGAACTGAAATTAATCCGTG
droKik1 scf7180000302389:430829-430977 - C-AAACAAA-CTCGTCTCG-------GAACT--C-----CAACATCCTGGAACTCCCTGC-----C------------CAAGGC-ACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTCTAAG---------------CTCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAGTGATA------A-----------------------------
droFic1 scf7180000453932:197445-197573 - C-AAACAAA-CTCGGCTCG-------GAAGC--C------A----------TC--CCCCC-----A------------CTGGGC-AGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTACAT-----------------CCAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAA-----------------------------------------
droEle1 scf7180000490753:30457-30582 + C-AAATAAA-CTCGA-------------ACC--C------A----------ATTACCTC--------------------GGGGC-ACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CACTAC-----------------TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC--CACGCAACAGTGATA------A-----------------------------
droRho1 scf7180000778253:33728-33868 - C-AAATAAA-CTCGGCTTT-------GAGTT--C------A----------ACTACCTCC-----A------------CGGGGC-ACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATACTA------------------CTGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC--CACGCAACAGTGATAATGATAA-----------------------------
droBia1 scf7180000302422:3830816-3830957 + C-AAACAAA-CTCGACCCA-------AAGGC--C------A----------ACCAACCCG-----T-------------CGGGC-ACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTCTAT-----------------TCAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCC-CATGCATCAGTGATAATGATAA-----------------------------
droTak1 scf7180000415871:385553-385699 + C-AAATAAA-CTCGACTTA-------AAACC--C------A----------ACCAACTCG-----A------------CGGGGC-ACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTCAAT-----------------TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAGTGATAATGATAAG------------ATC-------------
droEug1 scf7180000409063:317574-317723 + C-AAACAAA-CTCGACTTCAAAACCCAAACC--C------A----------ACTTCCTCG-----C------------CGGGGC-ACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGCGTT-----------------CTAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCC-CACGCAACCGGGATACCGATAA-----------------------------
dm3 chr2L:5641261-5641408 + dme-mir-962 Known_mirbase C-AAAAGAACTTGGACTCG---ACTTGAATT--C------A----------ACTACTTCG-----A------------TGGGGC-ACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTAT-----------------TCAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CATGCAACAGTGATAGTAGTGA-----------------------------
droSim2 2l:5446014-5446162 + dsi-mir-962 Known_mirbase C-AAAGGAA-CTCGACTCG---ACTTGAATCTAC------A----------ACTACCTCG-----A------------TGGGGC-GCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT-----------------TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CCTGCAACAGTGATAGTGATAA-----------------------------
droSec2 scaffold_5:3719002-3719150 + dse_179 candidate-rescued C-AAAGGAA-CTCGACTCG---ACTTGAATCTAC------A----------ACTACCTCG-----A------------TGGGGC-ATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT-----------------TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CATGCAACAGTGGTAGTGATAA-----------------------------
droYak3 2L:13551907-13552053 - dya_92 candidate-rescued C-AAAAGAA-CTCGACTCG---ACTCGAATC--C------A----------ACCAACTTC-----A------------TGGGGC-ACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTAT-----------------TCAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACAGTGATAATGATAA-----------------------------
droEre2 scaffold_4929:5729723-5729869 + der_24 candidate-rescued C-AAAAGAA-CTCGACTCG---GCTCGAATC--C------C----------AGTACCTCC-----T------------TGGGGC-ACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTAT-----------------TCGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACAGTGACAACGATAA-----------------------------
dp5 4_group4:3182225-3182366 - dps-mir-2509 Known_mirbase TGAAATGAA-CTCGACTCG-------AGTGCCACAAATGCCACATGA--------TGCAA-----A------------TGGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTATT----------------CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGC-CA----ACAGCAACAGCTACAA-----------------------------
droPer2 scaffold_10:2201156-2201297 - dpe_318 candidate-rescued TGAAATGAA-CTCGACTCG-------AGTGCCACAAATGCCACATGA--------TGCAA-----A------------TGGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTATT----------------CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGC-CA----ACAGCAACAGCTACAA-----------------------------
droWil2 scf2_1100000004521:8625878-8626045 - dwi_150 confident C-AAATAAA-CCTGGCTTAC--A---AAAGCTATAATTGCT-------GAAAT---GGATACACGTTTTCTATTTAATAAGGAC-CCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATTT---GTAACAAT-TG----TTAAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACATGCAACAA-----------------------------------------
droVir3 scaffold_12963:3615396-3615531 + dvi-mir-962 Known_mirbase T-TAAACAA-CTCAATTTAC--ACACACACA--C------------------ACACATAA-----G-----------AAAGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT-TTACAT-ATG------------GTGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AATGCAAC-------------------------------------------
droMoj3 scaffold_6500:14018363-14018471 + dmo_149 candidate-rescued A-------------------------------------------------------------------------------GAGC-GCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCAT---ATAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AATGCAGCAA-----------------------------------------
droGri2 scaffold_15252:3147208-3147333 + dgr_37 candidate-rescued A-AACTAAG-AGCAGGTTA--------CTTTC-A------T----A-----ACACACTC-------------------AAGAGC-TCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA------------------AAAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AATGCAAC-------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
C-AAATACG-CTCGACTTT-------GGGCC--C------A----------ACCACCTGG-----C-----------CGAGGGC-ACTCAAGCTATAAGGTAGAGAAAATAATGTCTTCGTCTCCAA-----------------ATAGACATCAATTTCCCTAGCTTGCATTTTGCCTGCCCC-CAAGCAACAATGATAACAGTGAG------------CTCAAGTTATGCCGGASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..............................................................................................ATAAGGTAGAGAAAATAATGTCT......................................................................................................................2311274.001274800261118122
..............................................................................................ATAAGGTAGAGAAAATAATGTC.......................................................................................................................2211238.001238261057111044
..............................................................................................ATAAGGTAGAGAAAATAATGT........................................................................................................................211170.0017040081526
..............................................................................................ATAAGGTAGAGAAAATAATG.........................................................................................................................20179.00794003684
.....................................................................................................................................................CATCAATTTCCCTAGCTTGCAT................................................................22111.0011000083
..............................................................................................ATAAGGTAGAGAAAATAAT..........................................................................................................................1916.006000042
...............................................................................................TAAGGTAGAGAAAATAATGTC.......................................................................................................................2114.004400000
..............................................................................................ATAAGGTAGAGAAAATAATGTCC......................................................................................................................2313.003010020
..............................................................................................ATAAGGTAGAGAAAATAATGTCA......................................................................................................................2313.003000111
..............................................................................................ATAAGGTAGAGAAAATAATGTT.......................................................................................................................2213.003000030
.............................................................................................TATAAGGTAGAGAAAATAATGT........................................................................................................................2212.002000020
...............................................................................................TAAGGTAGAGAAAATAATGTCT......................................................................................................................2212.002100010
..............................................................................................ATAAGGTAGAGAAAATAATGTCTTTT...................................................................................................................2612.002100010
..............................................................................................ATAAGGTAGAGAAAATAATGA........................................................................................................................2112.002000020
..............................................................................................ATAAGGTAGAGAAAATAATGTCTT.....................................................................................................................2411.001000010
..............................................................................................ATAAGGTAGAGAAAATAATGTAA......................................................................................................................2311.001000010
.....................................................................................................................................................CATCAATTTCCCTAGCTTGCATT...............................................................2311.001000100
..............................................................................................ATAAGGTAGAGAAAATAATGTCTTT....................................................................................................................2511.001000010
.....................................................................................................................................................CATCAATTTCCCTAGCTTGCA.................................................................2111.001000010
......................................................................................................................................................ATCAATTTCCCTAGCTTGCAT................................................................2111.001000010
....................................................................................................................................................ACATCAATTTCCCTAGCTTGCAT................................................................2311.001000010
..............................................................................................ATAAGGTAGAGAAAATAATGG........................................................................................................................2111.001000010
....................................................................................................................................................ACATCAATTTCCCTAGCTTGCA.................................................................2211.001100000
..............................................................................................ATAAGGTAGAGAAAATA............................................................................................................................1711.001000100
..............................................................................................ATAAGGTAGAGAAAATAATGC........................................................................................................................2111.001000010
................................................................................................AAGGTAGAGAAAATAATGTC.......................................................................................................................2011.001000010
...............................................................................................TAAGGTAGAGAAAATAATGT........................................................................................................................2011.001100000
.....................................................................................................................................................CATCAATTTCCCTAGCTTGC..................................................................2011.001000100
droBip1
C-AAATACA-CACGACTTT-------GGGCC--C------A----------ACCACCTGG-----T-----------CGGGGGC-ACCCAAGCTATAAGGTAGAGAAAGTAATGTCTTCGTCTCCAA-----------------ATAGACATCAATTTCCCTAGCTTGCAGTTTGCTTGCCCT-CAAGCAACCATGATAATAATAAGCTCATCAGTGAACTGAAATTAATCCGTGSizeHit CountTotal NormTotal
No Reads
droKik1
C-AAACAAA-CTCGTCTCG-------GAACT--C-----CAACATCCTGGAACTCCCTGC-----C------------CAAGGC-ACTCAAGCTATAAGGTAGAGAAATGGCTGTCTTG-ACTCTAAG---------------CTCGGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAGTGATA------A-----------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
C-AAACAAA-CTCGGCTCG-------GAAGC--C------A----------TC--CCCCC-----A------------CTGGGC-AGTCAAGCTATAAGGTAGAGAAACTCTTGTCTTCCCCTACAT-----------------CCAGACATCAGTTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAA-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
C-AAATAAA-CTCGA-------------ACC--C------A----------ATTACCTC--------------------GGGGC-ACCCAAGCTATAAGGTAGAGAAAATGTTGTCTTCC-CACTAC-----------------TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCC--CACGCAACAGTGATA------A-----------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
C-AAATAAA-CTCGGCTTT-------GAGTT--C------A----------ACTACCTCC-----A------------CGGGGC-ACTCAAGCTATAAGGTAGAGAAACTGTTGTCTTCCATACTA------------------CTGGACATCACTTTCACTAGCTTTCAGCTTGTTTGCCC--CACGCAACAGTGATAATGATAA-----------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
C-AAACAAA-CTCGACCCA-------AAGGC--C------A----------ACCAACCCG-----T-------------CGGGC-ACTCAAGCTATAAGGTAGAGAAATTGTTGTCCCACACTCTAT-----------------TCAGACATCAATTTCACTAGCTTTCAATTTGACTGCCCC-CATGCATCAGTGATAATGATAA-----------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
C-AAATAAA-CTCGACTTA-------AAACC--C------A----------ACCAACTCG-----A------------CGGGGC-ACCCAAGCTATAAGGTAGAGAAACTGTTGTCTGGCACTCAAT-----------------TCAGACATCAATTTCACTAGCTTTCAATTTGTCTGCCCC-CACGCAACAGTGATAATGATAAG------------ATC-------------SizeHit CountTotal NormTotal
No Reads
droEug1
C-AAACAAA-CTCGACTTCAAAACCCAAACC--C------A----------ACTTCCTCG-----C------------CGGGGC-ACACAAGCTCTAAGGTAGAGAAAATGTTGTCTTTGACGCGTT-----------------CTAGACATCAATTTCCCTAGCTTTCAATTTGTCTGCCCC-CACGCAACCGGGATACCGATAA-----------------------------SizeHit CountTotal NormTotal
No Reads
dm3
C-AAAAGAACTTGGACTCG---ACTTGAATT--C------A----------ACTACTTCG-----A------------TGGGGC-ACTCAGGCTATAAGGTAGAGAAATTGATGCTGTCTACACTAT-----------------TCAGACTTCAGTTTCATTACCTTTCAATTTGTTTGCCCC-CATGCAACAGTGATAGTAGTGA-----------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTC....................................................................................................................25141535.00415350000050001120100000002223000000000000431703330496035158362044279419335115852500000000000000000000000122113033000009001380223004291008052245002700000010000000232100005170044752063902033121057747347500000014032015020210113410027164040140039087659479734802711230056830001531009591004994357960158752611624668122546640831901300000960400160901070000012003001001100100155115816732017723804001337535481132756402810537133563701788010450015150524371212103613044919953116192249348647171550
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTCT...................................................................................................................26113984.001398400000000000400000000213000000000000155510131320930200121041722816331600000000000000000000000010000000000001002100000030000000001200000000000000000000000200000010018561133268105211116130000000000010000003200110000000068817194223260015711024250100011370300000120821664122806398307114332058420000000110100120470015000000001010000000100143858107969112380000000107423122601218613711215836322883430215641157005010021007121543826505215103400
..............................................................................................ATAAGGTAGAGAAATTGATGCTG......................................................................................................................23112620.001262000000200000400000000301240000000000012491071432871141289410251527228000000000000000000000001001000000000030012003000042000000060000011000000000000000010000011002770832962196271816160000040040410020004600004600013511393212477283200339013284900000923045100177515032172544819112231114150000000000010000027008000000000010000000200594251134790422020002934314239221122191158161179320528200438392004000000101262375643682666113130
..............................................................................................ATAAGGTAGAGAAATTGATGCTGT.....................................................................................................................2417426.0074260000000000010100000005000000000000002527611124651351073924521161300000000000000000000000010100050000003009013130027210020121360029010000000000000000011000010001024632260531113400000005020000000001001107030400382216222750054139180000012274110001001092271183252978284491356530000000001000000012008000000000000000000000774751347247952500000110121788211191429175642197769490034391151000000100014249222128333206100
..............................................................................................ATAAGGTAGAGAAATTGATGCT.......................................................................................................................2212870.0028700000000000000000000011029000000000003141425429430210610127200000000000000000000000001000000000000002002000000001010030000000000000000000000000000000004121591622357700000000000000000001000011000434599368718005202881300000290211004203171313851037144208232800000000000000000100100000000000000000000020922852117000003010136410033862214582171600113031202000000011606119616152301000
..............................................................................................ATAAGGTAGAGAAATTGATG.........................................................................................................................2011202.001202000000000000000000000007400000000000201022012100121417200000000000000000000000000000000000000000200100000000000001000000000000000000000000000000000132243200000000000010000000001000000000020060117323005001461300000124000000001424030121281017000000000000000001003000000000000000000000217100821000000210014220212171615936760003160020000000091232201400010
..............................................................................................ATAAGGTAGAGAAATTGATGC........................................................................................................................2111111.001111000000000001000000000004100000000000150112114010811090100000000000000000000000000000000000001002001000100000000000000000000000000000001000000000002693525201000000200000010000000000000000110394135300026010190000000000000000164015950625705700000000000000000500100001000000000000000083404010000000000000134610015771716150005812000000000001202884961412000
....................................................................................................................................................ACTTCAGTTTCATTACCTTTCA.................................................................221745.00745000001000006000000000009700000000000021000110002011110000200000000000000000002222030000000062036103000200200001122110010000000000000000000000000000000430280000000000000000101002401000000000028158000014020000000000000000001300281844573315693400000000000000000000100000000000000000000063500070200000010000100000000150200000000000000000000000100000
...............................................................................................TAAGGTAGAGAAATTGATGCTGTCT...................................................................................................................251608.0060800000000000000000000000000000000000010001011113020030000000000000000000000000000000000000010030000000000000000200000000000000000000000000000000010802200300000000030000000000100000000050037151000060270000000600000000045142031117300000000000000000200000000000000000000000013421101318000000000016003171412121940001730000000000020832571600000
..............................................................................................ATAAGGTAGAGAAATTGAT..........................................................................................................................191326.00326000000000000000000000004200000000000000001000001000010000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000141077000026077000000000000000000100002401010000000000000000010000000000000000000000000212000000000100000150000001353600010000000000002020000100000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTT....................................................................................................................251250.0025000000000000000000000000000000000000000000111000002240000000000000000000000000000000000000000102000000001000000010000000000000000000000000000000000102240001000000000000000000110000000000001509000030500000001000000000111321042010000000000000000000002000000000000000000000240000000000000000021010002710591700072000000000000001100100000
..............................................................................................ATAAGGTAGAGAAATTGA...........................................................................................................................181217.0021700000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000010211000000000000000000000000000001300010027048100070462200000100200002001030001000000000000100000000000000000000000000000000000000000000000010003000000046217000400000000000020160000400000
.....................................................................................................................................................CTTCAGTTTCATTACCTTTCAA................................................................221200.002000000010000000000000000067000000000000000000000000000000000000000000000000000000000000000000000501800000000000006000200000000000000000000000000000001003000000000000000000010320000000000003302800003011000000000000000001000324105083000000000000000000000000000000000000000000160000000000000000010000002030000020000000000000010000000000
.....................................................................................................................................................CTTCAGTTTCATTACCTTTCA.................................................................211182.001820000000000000000000000062000000000000010000000001000000000000000000000000000000000000000000000101200000000000000000300000000000000000000000000000000001000000000000000100100000001000000000912710001301800000000000000000020022162044000000000000000000001000000000000000000000070010010000010000000000000111000001000000000000000000000000
...............................................................................................TAAGGTAGAGAAATTGATGCTGTC....................................................................................................................241148.001480000000000000000000000000000000000010000010010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001010120000000000001000000000010000000006004070200306000000000000002000000000000210000000000000000000000000000000000000000001603020000000000000100000142583200030000000000000023112900000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTA....................................................................................................................251142.001420000000000030000000000000000000000000000009011003150000000000000000000000000000000000000000002000000000000000010000000000000000000000000000000000010110100000000000000000000110000000000006070000101000000000000000003000000100000000000000000000010000000000000000000000002001020000000100000100010012671400020000000000001020101000000
...............................................................................................TAAGGTAGAGAAATTGATGCTG......................................................................................................................221139.0013900000000000000000000000100000000000010100010010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000060000000000000000000020050900006015000000000000004812300000100000000000000000000010000000000000000000000000401150300000000000000102121353200010000000000000000022300000
....................................................................................................................................................ACTTCAGTTTCATTACCTTTCAA................................................................231123.001230000000000010000000000090000000000000000000000000000000000000000000000000000000000000000001007104000101000000040000000000000000000000000000000000000000300000000000000000001200000000000003010000030800000000000000000000010447110165000000000000000000000000000000000000000000050000000000000000000000000010000000000000000000000000100000
....................................................................................................................................................ACTTCAGTTTCATTACCTTTC..................................................................21191.009100000000000000000000000170000000000000000000000000000000010000000000000000000100000000000000003000000001000000010002000000000000000000000000000000000100100000000000000000000000010000000005070000400000000000000000000100235250571000000000000000000000000000000000000000001100001000000000000000000000120000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTG....................................................................................................................25170.00700000000000000000000000000000000000000010015000105000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000020010000000000000000000000010000000002000100000000000000000000000101001100000000000000000000010010000000000000000000001010001000000000000100100001246600000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTCA...................................................................................................................26164.00640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000011001000000000000000000000100000000000001020000005000000000000000001000122211200000000000000000000000000000000000000001000500000100000000000100000010252000010000000000001000000000000
...............................................................................................TAAGGTAGAGAAATTGATGCTGT.....................................................................................................................23159.00590000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000030000102000000000000000001101001000000000000000000000000000000000000000000000000310000000000000000000000000360000020000000100000000000200000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTCTT..................................................................................................................27144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000006050000005000000000000000000000100111200000000000000000010000000000000000000000000400000000000000000200000000111000000000000000001000000000000
....................................................................................................TAGAGAAATTGATGCTGTC....................................................................................................................19142.004200000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000201000000000000000002711100000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTT......................................................................................................................23142.00420000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000002080500001000000000000000000100000100000000000000000000010000000000000000000000000300010000000000000100000000101000010000000000000020001000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTCC...................................................................................................................26140.00400000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000004050000000000000000000000001101111000020000000000000000000000000000000000000000000200000000000000000100000101113000000000000000000000100000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTCG...................................................................................................................26130.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000001000000000000000000100000000000000000000000000000010000000000000000000001200000000000000000000100101161100000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGC.....................................................................................................................24126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001020000002000000000000000000001000000000000000000000000000010000000000000000000000100000000000000000000000000060000020000000000000000000000000
.........................................................TCG-----A------------TGGGGC-ACTCAGGCT.............................................................................................................................................19125.0025000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000002000000000000000000000000000000000000002000020000000000000000000220000320001000000000000000000000000000000000000000000000000000000000000000000000030000110000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGG.....................................................................................................................24125.00250000000000000000000000000000000000000000001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000161000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTC......................................................................................................................23121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000005000000200000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000001000070000010000000000000001000000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGA.....................................................................................................................24119.0019000000000000000000000000000000000000000000000010011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000100000000000000000010000020000000000000000000000000000000000000000000000010001000000000000001000000050000000000000000000010000000000
...............................................................................................TAAGGTAGAGAAATTGATGCT.......................................................................................................................21117.0017000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000200000000000000000000200001000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000060000000000000000000000020000000
..............................................................................................ATAAGGTAGAGAAATTGATGCATC.....................................................................................................................24116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000079000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTCTATC................................................................................................................29115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000078000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AGAGAAATTGATGCTGTC....................................................................................................................18114.0014000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000510000020000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................ACTTCAGTTTCATTACCTTT...................................................................20113.0013000000000000000000000003000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010302000000000010000000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTCTA..................................................................................................................27111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000200000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000020000000000000000000010000000000
...............................................................................................TAAGGTAGAGAAATTGATG.........................................................................................................................19111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGTCTC..................................................................................................................27111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000200000000000000000010000000000000011000000000000000000000000000000000000000000000000000000000000000030000000000000000000000001000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTGGT....................................................................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070300000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGCTA......................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000101000000200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000011000010000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGATT.........................................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000
....................................................................................................TAGAGAAATTGATGCTGTCT...................................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000302000000000000000000000000300000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
................................................................................................AAGGTAGAGAAATTGATGCTGTC....................................................................................................................2319.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000020000000000000000000000000000100000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000
droSim2
C-AAAGGAA-CTCGACTCG---ACTTGAATCTAC------A----------ACTACCTCG-----A------------TGGGGC-GCTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT-----------------TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CCTGCAACAGTGATAGTGATAA-----------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..............................................................................................ATAAGGTAGAGAAATTGATGTTGT.....................................................................................................................2415415.00541504003202837001340265145000
..............................................................................................ATAAGGTAGAGAAATTGATGTT.......................................................................................................................2214495.004495122039713672101683154076000
..............................................................................................ATAAGGTAGAGAAATTGATGTTG......................................................................................................................2313519.0035190201641101300570153356000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTC....................................................................................................................2512980.00298002431956512239001226142444000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTCT...................................................................................................................261663.0066305221101637109515452000
..............................................................................................ATAAGGTAGAGAAATTGATGT........................................................................................................................211241.00241020047333001701165000
..............................................................................................ATAAGGTAGAGAAATTGATG.........................................................................................................................201190.00190030011410000100062000
..............................................................................................ATAAGGTAGAGAAATTGATGTTT......................................................................................................................231168.001680000001100200164000
..............................................................................................ATAAGGTAGAGAAATTGA...........................................................................................................................18199.0099000095000002002000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTT....................................................................................................................25191.0091010000000000090000
..............................................................................................ATAAGGTAGAGAAATTGATGTTA......................................................................................................................23188.0088000000000000088000
..............................................................................................ATAAGGTAGAGAAATTGAT..........................................................................................................................19182.0082000074200001005000
....................................................................................................................................................ACTTCAGTTTCATTGCCTTTCA.................................................................22161.00610100380100000021000
..............................................................................................ATAAGGTAGAGAAATT.............................................................................................................................16138.0038000000000038000000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTCA...................................................................................................................26130.0030000000000010029000
....................................................................................................................................................ACTTCAGTTTCATTGCCTTTC..................................................................21119.0019000018000000001000
.....................................................................................................................................................CTTCAGTTTCATTGCCTTTCA.................................................................21118.0018030040010000010000
....................................................................................................................................................ACTTCAGTTTCATTGCCT.....................................................................18117.0017000016100000000000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTA....................................................................................................................25117.0017000000000000017000
...............................................................................................TAAGGTAGAGAAATTGATGTTGTCT...................................................................................................................25115.0015020000000020011000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGA.....................................................................................................................24114.0014000000000000014000
.....................................................................................................................................................CTTCAGTTTCATTGCCTTTCAA................................................................22112.001201005001000005000
...............................................................................................TAAGGTAGAGAAATTGATGTTG......................................................................................................................22110.001000000000001009000
....................................................................................................................................................ACTTCAGTTTCATTGCCTTTCAA................................................................23110.001000000001000009000
..............................................................................................ATAAGGTAGAGAAATTGATGTA.......................................................................................................................22110.0010000000000000010000
...............................................................................................TAAGGTAGAGAAATTGATGTTGTC....................................................................................................................2419.00900000010000008000
...............................................................................................TAAGGTAGAGAAATTGATGTTGT.....................................................................................................................2319.00900000001001007000
..............................................................................................ATAAGGTAGAGAAAT..............................................................................................................................1518.00800000000008000000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTCC...................................................................................................................2617.00705100000000001000
..............................................................................................ATAAGGTAGAGAAATTGATGTTAA.....................................................................................................................2416.00600000000000006000
..............................................................................................ATAAGGTAGAGAAATTGATGTG.......................................................................................................................2216.00600000000001005000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGC.....................................................................................................................2415.00502000000001002000
.....................................................................................................................................................CTTCAGTTTCATTGCCTT....................................................................1815.00500005000000000000
....................................................................................................................................................ACTTCAGTTTCATTGCCTT....................................................................1915.00500005000000000000
....................................................................................................................................................ACTTCAGTTTCATTGCCTTT...................................................................2015.00500003000000002000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTCTT..................................................................................................................2714.00401000000000003000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTCTA..................................................................................................................2714.00400001000000003000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGG.....................................................................................................................2414.00401000000000003000
...............................................................................................TAAGGTAGAGAAATTGATGTT.......................................................................................................................2113.00300000000000003000
..............................................................................................ATAAGGTAGAGAAATTG............................................................................................................................1713.00300000000002001000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTCTAA.................................................................................................................2813.00300000000000003000
..............................................................................................ATAAGGTAGAGAAATTGATGTTC......................................................................................................................2313.00300000000001002000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTG....................................................................................................................2513.00300000000000003000
..............................................................................................ATAAGGTAGAGAAATTGAAA.........................................................................................................................2013.00300000000000003000
.....................................................................................................................................................CTTCAGTTTCATTGCCTTTC..................................................................2013.00300001000000002000
................................................................................................AAGGTAGAGAAATTGATG.........................................................................................................................1812.00200002000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTAA...................................................................................................................2612.00200000000000002000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTCG...................................................................................................................2612.00202000000000000000
.................................................................................................AGGTAGAGAAATTGATGTT.......................................................................................................................1912.00200000000000002000
..............................................................................................ATAAGGTAGAGAAATTGATA.........................................................................................................................2012.00200000000000002000
..............................................................................................ATAAGGTAGAGAAATTGATT.........................................................................................................................2012.00200000000000002000
.................................................................................................AGGTAGAGAAATTGATGTTGT.....................................................................................................................2112.00200000000000002000
...............................................................................................TAAGGTAGAGAAATTGATGTTGTA....................................................................................................................2412.00200000000000002000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGAAA...................................................................................................................2611.00100000000000001000
................................................................................................AAGGTAGAGAAATTGATGTTG......................................................................................................................2111.00100001000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTCTTT.................................................................................................................2811.00100000000000001000
.....................................................................................................AGAGAAATTGATGTTGTCT...................................................................................................................1911.00100000000001000000
...............................................................................................TAAGGTAGAGAAATTGATG.........................................................................................................................1911.00100001000000000000
..............................................................................................ATAAGGTAGAGAAATTGATGTTAG.....................................................................................................................2411.00100000000000001000
.....................................................................................................AGAGAAATTGATGTTG......................................................................................................................1611.00100000000001000000
.....................................................................................................................................................CTTCAGTTTCATTGCCTTTCAAA...............................................................2311.00100000000000001000
................................................................................................AAGGTAGAGAAATTGATGTTGTCAT..................................................................................................................2511.00100000000000001000
..............................................................................................ATAAGGTAGAGAAATTGATGTTGGAC...................................................................................................................2611.00100000000000001000
.....................................................................................................AGAGAAATTGATGTTGT.....................................................................................................................1711.00100000000001000000
..............................................................................................ATAAGGTAGAGAAATTGATGTGT......................................................................................................................2311.00100000000001000000
.....................................................................................................AGAGAAATTGATGTTGTC....................................................................................................................1811.00100000000001000000
...............................................................................GGGGC-GCTCAGGCTATAAGGTA.....................................................................................................................................2211.00100001000000000000
...............................................................................................TAAGGTAGAGAAATTGATGTTGTCC...................................................................................................................2511.00101000000000000000
................................................................................................................................................TCAGACTTCAGTTTCATTGCCT.....................................................................2211.00100100000000000000
....................................................................................................TAGAGAAATTGATGTTGTC....................................................................................................................1911.00100000000001000000
......................................................................................................................................................TTCAGTTTCATTGCCTTTCA.................................................................2011.00100000000000001000
................................................................................................AAGGTAGAGAAATTGATGTTGTC....................................................................................................................2311.00100000000000001000
.................................................................................................AGGTAGAGAAATTGATGTTGTC....................................................................................................................2211.00100000000001000000
.....................................................................................................................................................CTTCAGTTTCATTGCCTTT...................................................................1911.00100001000000000000
....................................................................................................TAGAGAAATTGATGTT.......................................................................................................................1611.00100000000001000000
......................................................................................................GAGAAATTGATGTTGTC....................................................................................................................1711.00100000000001000000
.....................................................................................................................................................CTTCAGTTTCATTGCCTTTCT.................................................................2111.00100000000000001000
....................................................................................................TAGAGAAATTGATGTTGTCT...................................................................................................................2011.00100000000001000000
.................................................................................................AGGTAGAGAAATTGATGTTGTCATA.................................................................................................................2511.00100000000000001000
....................................................................................................TAGAGAAATTGATGTTGT.....................................................................................................................1811.00100000000001000000
..............................................................................................ATAAGGTAGAGAAATTGAA..........................................................................................................................1911.00100000000000001000
.............................................................................................TATAAGGTAGAGAAATTGATGT........................................................................................................................2211.00100000000001000000
........................................................................................................GAAATTGATGTTGTC....................................................................................................................1520.50100000000001000000
..............................................................................................ATAAGGTAGAGAAATA.............................................................................................................................1660.17100000000001000000
droSec2
C-AAAGGAA-CTCGACTCG---ACTTGAATCTAC------A----------ACTACCTCG-----A------------TGGGGC-ATTCAGGCTATAAGGTAGAGAAATTGATGTTGTCTACACTAT-----------------TCAGACTTCAGTTTCATTGCCTTTCAATTTGTTTGCCCC-CATGCAACAGTGGTAGTGATAA-----------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..............................................................................................ATAAGGTAGAGAAATTGATGTT.......................................................................................................................221819.0081976491576
..............................................................................................ATAAGGTAGAGAAATTGATGTTGT.....................................................................................................................241764.007642697614
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTC....................................................................................................................251754.0075435422009
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTCT...................................................................................................................261486.0048603521304
..............................................................................................ATAAGGTAGAGAAATTGATGTTG......................................................................................................................231393.003934376103
..............................................................................................ATAAGGTAGAGAAATTGATGT........................................................................................................................21128.002822240
...............................................................................................TAAGGTAGAGAAATTGATGTTGTCT...................................................................................................................2519.0091620
..............................................................................................ATAAGGTAGAGAAATTGATG.........................................................................................................................2017.0070700
..............................................................................................ATAAGGTAGAGAAATTGATGTTT......................................................................................................................2316.0060600
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTT....................................................................................................................2516.0060510
...............................................................................................TAAGGTAGAGAAATTGATGTTGTC....................................................................................................................2414.0040400
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTCTT..................................................................................................................2714.0040220
...............................................................................................TAAGGTAGAGAAATTGATGTTGT.....................................................................................................................2314.0040310
...............................................................................................TAAGGTAGAGAAATTGATGTTG......................................................................................................................2213.0030300
..............................................................................................ATAAGGTAGAGAAATTGATGTTGG.....................................................................................................................2411.0010100
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTTCT..................................................................................................................2711.0010001
...............................................................................................TAAGGTAGAGAAATTGATGTT.......................................................................................................................2111.0010010
..............................................................................................ATAAGGTAGAGAAATTGA...........................................................................................................................1811.0010010
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTA....................................................................................................................2511.0010100
..............................................................................................ATAAGGTAGAGAAATTGATGTTGA.....................................................................................................................2411.0010100
..............................................................................................ATAAGGTAGAGAAATTGATGTTGTCTA..................................................................................................................2711.0010100
..............................................................................................ATAAGGTAGAGAAATTGATGTC.......................................................................................................................2211.0010100
.................................................................................................AGGTAGAGAAATTGATGTT.......................................................................................................................1911.0010100
droYak3
C-AAAAGAA-CTCGACTCG---ACTCGAATC--C------A----------ACCAACTTC-----A------------TGGGGC-ACACAAGCTATAAGGTAGAGAAATTGTTGTCTTCCACACTAT-----------------TCAGACATCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACAGTGATAATGATAA-----------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..............................................................................................ATAAGGTAGAGAAATTGTTGTC.......................................................................................................................2211280.001280305123111611580000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCT......................................................................................................................231633.00633131440026000000
..............................................................................................ATAAGGTAGAGAAATTGTTGT........................................................................................................................211129.0012911810021070000
...............................................................................................TAAGGTAGAGAAATTGTTGTCT......................................................................................................................22145.0045020000430000
..............................................................................................ATAAGGTAGAGAAATTGTTG.........................................................................................................................20123.0023020001200000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCC......................................................................................................................2315.00520100020000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCA......................................................................................................................2314.00401000030000
...............................................................................................TAAGGTAGAGAAATTGTTGTC.......................................................................................................................2112.00202000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTT.....................................................................................................................2411.00100000010000
...............................................................................................TAAGGTAGAGAAATTGTTGTCTA.....................................................................................................................2311.00100000010000
..............................................................................................ATAAGGTAGAGAAATTGT...........................................................................................................................1811.00100001000000
.............................................................................................TATAAGGTAGAGAAATTGTTGTCT......................................................................................................................2411.00100000010000
................................................................................................AAGGTAGAGAAATTGTTGTC.......................................................................................................................2011.00100100000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTT.......................................................................................................................2211.00100100000000
.................................................................................................AGGTAGAGAAATTGTTGTC.......................................................................................................................1911.00100000010000
.....................................................................................................................................................CATCAGTTTAACTATCTTTCA.................................................................2111.00101000000000
................................................................................................AAGGTAGAGAAATTGTTGTCT......................................................................................................................2111.00100000010000
..............................................................................................ATAAGGTAGAGAAATTGTT..........................................................................................................................1911.00100000010000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCG......................................................................................................................2311.00110000000000
droEre2
C-AAAAGAA-CTCGACTCG---GCTCGAATC--C------C----------AGTACCTCC-----T------------TGGGGC-ACTCAAGCTATAAGGTAGAAAAATTGTTGTCTTCCACACTAT-----------------TCGGACTGCAGTTTAACTATCTTTCAATTTGTTTGCCCC-CACGCAACAGTGACAACGATAA-----------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..............................................................................................ATAAGGTAGAAAAATTGTTGTC.......................................................................................................................2217500.007500221135367007290
..............................................................................................ATAAGGTAGAAAAATTGTTGT........................................................................................................................211605.006053110549510
..............................................................................................ATAAGGTAGAAAAATTGTTGTCT......................................................................................................................231300.003007040258310
..............................................................................................ATAAGGTAGAAAAATTGTTG.........................................................................................................................20182.008210107190
...............................................................................................TAAGGTAGAAAAATTGTTGTCT......................................................................................................................22168.006810006520
..............................................................................................ATAAGGTAGAAAAATTGTTGTCA......................................................................................................................23119.001900001810
...............................................................................................TAAGGTAGAAAAATTGTTGTC.......................................................................................................................2117.0071000510
................................................................................................AAGGTAGAAAAATTGTTGTC.......................................................................................................................2016.0060000600
..............................................................................................ATAAGGTAGAAAAATTGTC..........................................................................................................................1916.0060000600
..............................................................................................ATAAGGTAGAAAAATTGTTGTT.......................................................................................................................2214.0040000400
..............................................................................................ATAAGGTAGAAAAATTGTTGTA.......................................................................................................................2213.0030000120
..............................................................................................ATAAGGTAGAAAAATTGTTGTCC......................................................................................................................2313.0030000300
...............................................................................................TAAGGTAGAAAAATTGTTGTCTT.....................................................................................................................2311.0010000010
.....................................................................................................................................................CTGCAGTTTAACTATCTTTCA.................................................................2111.0010000100
..............................................................................................ATAAGGTAGAAAAATTGTTGC........................................................................................................................2111.0010000100
...............................................................................................TAAGGTAGAAAAATTGTTGT........................................................................................................................2011.0010000100
..............................................................................................ATAAGGTAGAAAAATTGTTGTCTC.....................................................................................................................2411.0010000100
..............................................................................................ATAAGGTAGAAAAATTGTTGTGA......................................................................................................................2311.0010000100
...............................................................................................TAAGGTAGAAAAATTGTTGTCTTC....................................................................................................................2411.0010000100
..............................................................................................ATAAGGTAGAAAAATTGTTT.........................................................................................................................2011.0010000100
...............................................................................................TAAGGTAGAAAAATTGTTGTCA......................................................................................................................2211.0011000000
dp5
TGAAATGAA-CTCGACTCG-------AGTGCCACAAATGCCACATGA--------TGCAA-----A------------TGGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTATT----------------CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGGCGC-CA----ACAGCAACAGCTACAA-----------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.............................................................................................TTTAAGGTACAGACTTTG---------AGTC...............................................................................................................221720.00720861100820104860
.............................................................................................TTTAAGGTACAGACTTTG---------AG.................................................................................................................201381.003814300022603460
.............................................................................................TTTAAGGTACAGACTTTG---------AGT................................................................................................................211292.002921010001102781
.............................................................................................TTTAAGGTACAGACTTTG---------AGTCT..............................................................................................................231125.00125158000280920
......................................................................................................................................................ATCAATTTTCGTATCTTTTAAT...............................................................22125.002500000000250
.............................................................................................TTTAAGGTACAGACTTTG---------A..................................................................................................................19123.002301000100210
.............................................................................................TTTAAGGTACAGACTTTG---------AGTT...............................................................................................................22115.001501000040100
......................................................................................................................................................ATCAATTTTCGTATCTTTTAA................................................................21113.001303000000100
.....................................................................................................................................................CATCAATTTTCGTATCTTTTAAT...............................................................2319.0090001000080
.............................................................................................TTTAAGGTACAGACTTTG---------AGTCA..............................................................................................................2317.0070000000070
..........................................................................................TGTTTTAAGGTACAGACTTTG---------A..................................................................................................................2216.0060000000060
..............................................................................................TTAAGGTACAGACTTTG---------AGTC...............................................................................................................2115.0050000003020
.............................................................................................TTTAAGGTACAGACTTTG---------AGA................................................................................................................2114.0040000001030
..........................................................................................TGTTTTAAGGTACAGACTTTG---------...................................................................................................................2112.0020000000020
..............................................................................................TTAAGGTACAGACTTTG---------AG.................................................................................................................1912.0020000000020
.............................................................................................TTTAAGGTACAGACTTTG---------AA.................................................................................................................2012.0020000000020
.............................................................................................TTTAAGGTACAGACTTTG---------AGTA...............................................................................................................2212.0020000000020
................................................................................................AAGGTACAGACTTTG---------AGTCA..............................................................................................................2012.0020000000020
................................................................................................AAGGTACAGACTTTG---------AGTC...............................................................................................................1912.0020000000020
.............................................................................................TTTAAGGTACAGACTTTG---------AGTCCTA............................................................................................................2511.0010000000010
.............................................................................................TTTAAGGTACAGACTTTA---------...................................................................................................................1811.0010000000010
..............................................................................................TTAAGGTACAGACTTTG---------AGT................................................................................................................2011.0010000000010
.............................................................................................TTTAAGGTACAGACTTTG---------...................................................................................................................1811.0010000000010
.............................................................................................TTTAAGGTACAGACTTTG---------AGTCC..............................................................................................................2311.0010000000010
.............................................................................................TTTAAGGTACAGACTTTG---------AGTCTA.............................................................................................................2411.0010000000010
.............................................................................................TTTAAGGTACAGACTTTG---------AGTCTATT----------------C..........................................................................................2711.0010000000010
......................................................................................................................................................ATCAATTTTCGTATCTTTTA.................................................................2011.0010000000010
..............................................................................................TTAAGGTACAGACTTTG---------AGTCT..............................................................................................................2211.0010100000000
.................................................................................AGC-AGTCGTGTTTTAAGGTAC....................................................................................................................................2111.0011000000000
.....................................................................................................................................................CATCAATTTTCGTATCTTTTAA................................................................2211.0010000000010
droPer2
TGAAATGAA-CTCGACTCG-------AGTGCCACAAATGCCACATGA--------TGCAA-----A------------TGGAGC-AGTCGTGTTTTAAGGTACAGACTTTG---------AGTCTATT----------------CTAGGCATCAATTTTCGTATCTTTTAATTCGTCTGCCGC-CA----ACAGCAACAGCTACAA-----------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.............................................................................................TTTAAGGTACAGACTTTG---------AGTC...............................................................................................................221234.0023401010232
.............................................................................................TTTAAGGTACAGACTTTG---------AGTCT..............................................................................................................23137.00370000037
.............................................................................................TTTAAGGTACAGACTTTG---------AG.................................................................................................................20132.00320000032
.............................................................................................TTTAAGGTACAGACTTTG---------AGT................................................................................................................21115.00150100014
.............................................................................................TTTAAGGTACAGACTTTG---------A..................................................................................................................1915.005000005
.............................................................................................TTTAAGGTACAGACTTTG---------AGTT...............................................................................................................2215.005000005
.............................................................................................TTTAAGGTACAGACTTTG---------AGTA...............................................................................................................2211.001000001
.............................................................................................TTTAAGGTACAGACTTTG---------AGTCA..............................................................................................................2311.001000001
droWil2
C-AAATAAA-CCTGGCTTAC--A---AAAGCTATAATTGCT-------GAAAT---GGATACACGTTTTCTATTTAATAAGGAC-CCTCAAGTTATAAGGTAGAGAAAATGTTGTCTTTATATTT---GTAACAAT-TG----TTAAGACATCACTTTCACTAGCTTTCAATTTGTCTGCTCCACATGCAACAA-----------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..............................................................................................ATAAGGTAGAGAAAATGTTGTCT......................................................................................................................2311876.001876261117621463
..............................................................................................ATAAGGTAGAGAAAATGTTGTC.......................................................................................................................2211235.00123512411791327
..............................................................................................ATAAGGTAGAGAAAATGTTGTCC......................................................................................................................23153.0053714302
...............................................................................................TAAGGTAGAGAAAATGTTGTCT......................................................................................................................22132.0032012812
..............................................................................................ATAAGGTAGAGAAAATGTTGT........................................................................................................................21626.671600115603
..............................................................................................ATAAGGTAGAGAAAATGTTGTCA......................................................................................................................23123.0023012200
...............................................................................................................................................TTAAGACATCACTTTCACTAGC......................................................................22111.001112413
..............................................................................................ATAAGGTAGAGAAAATGTTG.........................................................................................................................2066.5039003900
..............................................................................................ATAAGGTAGAGAAAATGTTGTCTT.....................................................................................................................2415.00500500
...............................................................................................................................................TTAAGACATCACTTTCACTAG.......................................................................2115.00511300
..............................................................................................ATAAGGTAGAGAAAATGTTGTCTA.....................................................................................................................2414.00400301
..............................................................................................ATAAGGTAGAGAAAATGTTGTCTC.....................................................................................................................2413.00300201
.............................................................................................TATAAGGTAGAGAAAATGTTGTCT......................................................................................................................2413.00300201
.....................................................................................................................................................CATCACTTTCACTAGCTTTCA.................................................................2113.00300201
.............................................................................................TATAAGGTAGAGAAAATGTTGTC.......................................................................................................................2313.00300300
..............................................................................................ATAAGGTAGAGAAAATGTTGTCG......................................................................................................................2313.00310200
..............................................................................................ATAAGGTAGAGAAAATGTTGTCCC.....................................................................................................................2412.00200200
.....................................................................................................................................................CATCACTTTCACTAGCTTTCAA................................................................2212.00200200
...............................................................................................................................................TTAAGACATCACTTTCACTA........................................................................2011.00100001
...............................................................................................................................................TTAAGACATCACTTTCACTAGCA.....................................................................2311.00100100
.....................................................................................................................................................CATCACTTTCACTAGCTTTC..................................................................2011.00100100
..........................................................................TAATAAGGAC-CCTCAAGTT.............................................................................................................................................1911.00110000
................................................................................................................................................TAAGACATCACTTTCACTAGCT.....................................................................2211.00100001
...............................................................................................................................................TTAAGACATCACTTTCACTAGCG.....................................................................2311.00100100
...............................................................................................................................................TTAAGACATCACTTTCACTAGCT.....................................................................2311.00110000
................................................................................................AAGGTAGAGAAAATGTTGTC.......................................................................................................................2011.00100100
..............................................................................................ATAAGGTAGAGAAAATGTTGTT.......................................................................................................................2260.83500500
..............................................................................................ATAAGGTAGAGAAAATGTT..........................................................................................................................1960.67400400
..............................................................................................ATAAGGTAGAGAAAATGTTGTA.......................................................................................................................2260.33200200
..............................................................................................ATAAGGTAGAGAAAATGT...........................................................................................................................1860.17100001
.............................................................................................TATAAGGTAGAGAAAATGTTGT........................................................................................................................2260.17100100
...............................................................................................TAAGGTAGAGAAAATGTTGT........................................................................................................................2060.17101000
..............................................................................................ATAAGGTAGAGAAAATGTCT.........................................................................................................................20100.10100100
droVir3
T-TAAACAA-CTCAATTTAC--ACACACACA--C------------------ACACATAA-----G-----------AAAGGGCGCCTCAAATTATAAGGTAGAGAAATTGTTGTCTACT-TTACAT-ATG------------GTGAGACATCAAT-TCACTAGCTTTCAATTTGTACGCCCA-AATGCAAC-------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..............................................................................................ATAAGGTAGAGAAATTGTTGTCT......................................................................................................................231452353.0045235343722417134983055795910172618101383231568429120323943379189263263231191604212413091328426856628584317648935243732626700000000010200177133028261343626316133181361231914315383110228
..............................................................................................ATAAGGTAGAGAAATTGTTGTCC......................................................................................................................23124475.00244751360483262911451252943827001400040217220141310419042207937294622343000016279700000000000000000800012490580002313207293110002
..............................................................................................ATAAGGTAGAGAAATTGTTGTC.......................................................................................................................22120497.002049717044127167160177260505953004100240111902297131718248821206892252081610309139500000000000000000401252307190054515327452471214
..............................................................................................ATAAGGTAGAGAAATTGTTGT........................................................................................................................2118724.0087242038324512449643515164100320140036010321254626147810493601114125700141114970000000000000000000231420228107159191016470033
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTC.....................................................................................................................2418340.0083403203061186154715448000200020747109221036796933289540601000061172000000000000000002000240000001121421820600000
...............................................................................................TAAGGTAGAGAAATTGTTGTCT......................................................................................................................2213286.003286504314312155408100250020000001641010207240179782540102001012140000000000000000000109600200010301000001
..............................................................................................ATAAGGTAGAGAAATTGTTG.........................................................................................................................2011084.0010840014051199488130500000010068009216312911348148058010021320000000000000000000011400310110010001011
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTT.....................................................................................................................241691.0069100123480103111600000000002400120331057714851460020145000000000000000000000300000011102000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCCC.....................................................................................................................241497.0049760000761002900000000005300000003133257006500000820000000000000000000002500000000001000000
...............................................................................................TAAGGTAGAGAAATTGTTGTCTA.....................................................................................................................231431.00431000014317019500000000003700000003426143402300000310000000000000000000001800000020100000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTA.....................................................................................................................241197.001970000513133121111002100000050010027137513030030511000000000000000000010300000010001000000
....................................................................................................................................................ACATCAAT-TCACTAGCTTTCA.................................................................211194.0019400101400000000000010190010000492413320120000036000000000000000000000100000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTC.........................................................................................................................201192.001921000122000480000000000130000000151532801100001240000000000000000000001000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTCT....................................................................................................................251167.001670000039011380000000000700000001520213050000019000000000000000000000700000000000000000
....................................................................................................................................................ACATCAAT-TCACTAGCTTTCAA................................................................221167.001670010140000000000000011000000144242045000000016000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTTC......................................................................................................................231166.0016620000170012000000000001800000001817826090000020000000000000000000000700000010002000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCA......................................................................................................................231164.001640061111460350000000100600202231114810040030150000000000000000000001800000103500000001
.................................................................................................AGGTAGAGAAATTGTTGTCT......................................................................................................................201157.001570000128124030100000000013000000011932090000024000000000000000000000100000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCCT.....................................................................................................................241138.0013810100700019000000000020000000013143180120000026000000000000000000000300000010000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCG......................................................................................................................231110.001102510004019030100000000090000000162103000005000000000000000000000100000001100000000
...................................................................................................GTAGAGAAATTGTTGTCT......................................................................................................................18198.009800101180161900000000001200000009110505000019000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTT..........................................................................................................................19191.00910000016040900000001008000001012135805000009000000000000000000000000000000000000000
................................................................................................AAGGTAGAGAAATTGTTGTCT......................................................................................................................21180.008000720009113000000000050000000101021202000006000000000000000000000100000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTT.......................................................................................................................22167.0067000003060180000000000600000016311403000003000000000000000000000300000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTCA....................................................................................................................25162.006200000100016000000000080010000758203000017000000000000000000000300000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTCC.........................................................................................................................20160.006010000300111000000000090000000765903000003000000000000000000000200000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTTT....................................................................................................................25160.006000000007017000000000020000000762603000008000000000000000000000200000000000000000
..................................................................................................GGTAGAGAAATTGTTGTCT......................................................................................................................19147.004700000100516000000000040000000850101000006000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGT...........................................................................................................................18145.00450000020211000000000050000000753607000004000000000000000000000000000002000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTA.......................................................................................................................22141.00410010041009000100000080000020141400000003000000000000000000000000000100000010000
...............................................................................................TAAGGTAGAGAAATTGTTGTC.......................................................................................................................21138.00380080010407000000000010000000412503000001000000000000000000000100000000000000000
...............................................................................................TAAGGTAGAGAAATTGTTGTCC......................................................................................................................22134.00340030050006000000000000000000423204000004000000000000000000000100000000000000000
...............................................................................................TAAGGTAGAGAAATTGTTGTCTC.....................................................................................................................23134.00340010070118000000000020000000212201000005000000000000000000000100000000000000000
....................................................................................................................................................ACATCAAT-TCACTAGCTTTC..................................................................20129.00290000010201000000000000000000551503000006000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTTTC-..................................................................................................................26129.002900000200010000000000020000000121402000005000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTTCT.....................................................................................................................24125.00250000010705000000000010000000210000000000000000000000000000000800000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTC..........................................................................................................................19124.002400000300011000000000010000000120400000002000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTCTC-..................................................................................................................26124.00240000020001000000000010000000563500000001000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTAC......................................................................................................................23123.00230000030203000000000040000000111004000003000000000000000000000100000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTAA....................................................................................................................25123.00230000001030010000000030000032011000005020000000000000000000000000000010000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGC........................................................................................................................21120.00200000010804000000000030000000011001000001000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTAA......................................................................................................................23118.00180010001010010000000000000010000000010000000000000000000000000400000000103020011
...............................................................................................TAAGGTAGAGAAATTGTTGTCTAT....................................................................................................................24116.00160000010300000000000010000000120500000001000000000000000000000200000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTAT....................................................................................................................25115.00150000000330300100000000000030000000001010000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTAAA-..................................................................................................................26115.00150010100000000000000000000034000000005000000000000000000000000000100000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTTCC.....................................................................................................................24115.00150000020003000000000000000000320102000002000000000000000000000000000000000000000
.................................................................................................AGGTAGAGAAATTGTTGTCC......................................................................................................................20113.00130000060000000000000000000000100101000002000000000000000000000200000000000000000
.............................................................................................TATAAGGTAGAGAAATTGTTGTCT......................................................................................................................24112.00120010000203000000000000000000111002000000000000000000000000000100000000000000000
.................................................................................................AGGTAGAGAAATTGTTGTC.......................................................................................................................19111.00110000020002000000000000000000102000000004000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTTA....................................................................................................................25111.00110000000015000000000010000000111000000001000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTCC........................................................................................................................21110.00100000000003000000000000000001110102000001000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCTG.....................................................................................................................24110.00100000010011000000000010000000120100000002000000000000000000000000000000000000000
..................................................................................................GGTAGAGAAATTGTTGTCTC.....................................................................................................................2019.0090000030001000000000020000000000001000002000000000000000000000000000000000000000
...................................................................................................GTAGAGAAATTGTTGTCC......................................................................................................................1819.0090000000007000000000010000000010000000000000000000000000000000000000000000000000
..............................................................................................ATAAGGTAGAGAAATTGTTGTCCCT....................................................................................................................2519.0090000000002000000000010000000210200000001000000000000000000000000000000000000000
droMoj3
A-------------------------------------------------------------------------------GAGC-GCTCAAGTTATAAGGTAGAGATATTGTTGTCTTTTTGCAT---ATAGCACTCTGTTATGAAAGACATCAAT-TCACTAGCTTTCAATTTGTACGCTTA-AATGCAGCAA-----------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..............................................................................................ATAAGGTAGAGATATTGTTGTCT......................................................................................................................23114885.001488552089144114599
..............................................................................................ATAAGGTAGAGATATTGTTGT........................................................................................................................2112016.002016170468701866
..............................................................................................ATAAGGTAGAGATATTGTTGTC.......................................................................................................................2211358.00135811091701321
..............................................................................................ATAAGGTAGAGATATTGTTGTCTC.....................................................................................................................241867.0086780390847
...............................................................................................TAAGGTAGAGATATTGTTGTCT......................................................................................................................221513.0051350460498
...............................................................................................TAAGGTAGAGATATTGTTGTCTTC....................................................................................................................241301.0030130000298
..............................................................................................ATAAGGTAGAGATATTGTTGTCTTC....................................................................................................................251130.0013010000129
..............................................................................................ATAAGGTAGAGATATTGTTGTCC......................................................................................................................231119.0011910001117
..............................................................................................ATAAGGTAGAGATATTGTTG.........................................................................................................................201112.0011240312093
..............................................................................................ATAAGGTAGAGATATTGTTGTCTCC....................................................................................................................25188.00886001081
..............................................................................................ATAAGGTAGAGATATTGTTGTCTT.....................................................................................................................24188.00881022083
...............................................................................................TAAGGTAGAGATATTGTTGTCTT.....................................................................................................................23167.00674002061
...............................................................................................TAAGGTAGAGATATTGTTGTC.......................................................................................................................21154.00542001051
..............................................................................................ATAAGGTAGAGATATTGTTGTCTTTC...................................................................................................................26134.00340000034
..............................................................................................ATAAGGTAGAGATATTGTTGTCTTT....................................................................................................................25131.00310002029
...............................................................................................TAAGGTAGAGATATTGTTGTCTTT....................................................................................................................24127.00270000027
...............................................................................................TAAGGTAGAGATATTGTTGTCTTTC...................................................................................................................25126.00260000026
..............................................................................................ATAAGGTAGAGATATTGTTGTCTCA....................................................................................................................25116.00160001015
...............................................................................................TAAGGTAGAGATATTGTTGTCTTCC...................................................................................................................25116.00160000016
..............................................................................................ATAAGGTAGAGATATTGTTGTCA......................................................................................................................23116.00160001015
...............................................................................................TAAGGTAGAGATATTGTTGTCTC.....................................................................................................................23115.00151010013
...............................................................................................TAAGGTAGAGATATTGTTGT........................................................................................................................20115.00151002012
..............................................................................................ATAAGGTAGAGATATTGTTGC........................................................................................................................21110.0010100009
..............................................................................................ATAAGGTAGAGATATTGTTGTCTA.....................................................................................................................2418.008100007
..............................................................................................ATAAGGTAGAGATATTGTTGTCTCCC...................................................................................................................2616.006000006
..............................................................................................ATAAGGTAGAGATATTGTTGTCTTCC...................................................................................................................2616.006000006
..............................................................................................ATAAGGTAGAGATATTGTTGTT.......................................................................................................................2216.006000006
...............................................................................................TAAGGTAGAGATATTGTTGTCTTCA...................................................................................................................2514.004000004
...............................................................................................TAAGGTAGAGATATTGTTGTCC......................................................................................................................2214.004000004
..............................................................................................ATAAGGTAGAGATATTGTTGTCCC.....................................................................................................................2414.004000004
..............................................................................................ATAAGGTAGAGATATTGTTGTCTTTT...................................................................................................................2613.003000003
................................................................................................AAGGTAGAGATATTGTTGTCT......................................................................................................................2113.003200001
..............................................................................................ATAAGGTAGAGATATTGTT..........................................................................................................................1913.003001002
..............................................................................................ATAAGGTAGAGATATTGTC..........................................................................................................................1913.003000003
...............................................................................................TAAGGTAGAGATATTGTTGTCTTA....................................................................................................................2412.002000002
..............................................................................................ATAAGGTAGAGATATTGTTC.........................................................................................................................2012.002000002
..............................................................................................ATAAGGTAGAGATATTGTTGTCTTCA...................................................................................................................2612.002000002
..............................................................................................ATAAGGTAGAGATATTGTTGTA.......................................................................................................................2212.002000002
..............................................................................................ATAAGGTAGAGATATTGTTGA........................................................................................................................2112.002000200
....................................................................................................................................................ACATCAAT-TCACTAGCTTTCAA................................................................2211.001100000
...............................................................................................TAAGGTAGAGATATTGTTGTCTTTTTC.................................................................................................................2711.001000001
..............................................................................................ATAAGGTAGAGATATTGTTGTCCCC....................................................................................................................2511.001000001
..............................................................................................ATAAGGTAGAGATATTGT...........................................................................................................................1811.001001000
..............................................................................................ATAAGGTAGAGATATTGTTGTCTTA....................................................................................................................2511.001000001
..............................................................................................ATAAGGTAGAGATATTGTTGTCTCG....................................................................................................................2511.001000001
.....................................................................................................................TTTTGCAT---ATAGCACTCTGTTATGT..........................................................................................2511.001000001
..............................................................................................ATAAGGTAGAGATATTGTTGTG.......................................................................................................................2211.001100000
..............................................................................................ATAAGGTAGAGATATTGTTT.........................................................................................................................2011.001001000
..............................................................................................ATAAGGTAGAGATATTGTTGTCTTTAA..................................................................................................................2711.001000001
..............................................................................................ATAAGGTAGAGATATTGTTGTTC......................................................................................................................2311.001000100
..............................................................................................ATAAGGTAGAGATATTGTTGTCTTTTCT.................................................................................................................2811.001000001
...............................................................................................TAAGGTAGAGATATTGTTGTCTCA....................................................................................................................2411.001000001
.................................................................................................AGGTAGAGATATTGTTGTCT......................................................................................................................2011.001000001
..............................................................................................ATAAGGTAGAGATATTGTTGTCTTTTC..................................................................................................................2711.001000001
..............................................................................................ATAAGGTAGAGATATTGTTGTCTTTTT..................................................................................................................2711.001000100
...............................................................................................TAAGGTAGAGATATTGTTG.........................................................................................................................1911.001100000
...............................................................................................TAAGGTAGAGATATTGTTGTT.......................................................................................................................2111.001000001
..............................................................................................ATAAGGTAGAGATATTGTTGTCTCCA...................................................................................................................2611.001000001
..............................................................................................ATAAGGTAGAGATATTGTTGTAA......................................................................................................................2311.001100000
................................................................................................AAGGTAGAGATATTGTTGTC.......................................................................................................................2011.001000001
...............................................................................................TAAGGTAGAGATATTGTTGTCTTTT...................................................................................................................2511.001000001
...............................................................................................TAAGGTAGAGATATTGTTGTCTTCCC..................................................................................................................2611.001000001
..............................................................................................ATAAGGTAGAGATATTGTCT.........................................................................................................................2011.001000001
droGri2
A-AACTAAG-AGCAGGTTA--------CTTTC-A------T----A-----ACACACTC-------------------AAGAGC-TCTCAGATTATAAGGTAGAGATTTTGTTGTCTTCTATTATA------------------AAAGACATCAAT-TCACTAGCTTTCAATTTGTATGCTCA-AATGCAAC-------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..............................................................................................ATAAGGTAGAGATTTTGTTGTCT......................................................................................................................2311234.001234341200
..............................................................................................ATAAGGTAGAGATTTTGTTGT........................................................................................................................211282.002827275
..............................................................................................ATAAGGTAGAGATTTTGTTGTC.......................................................................................................................221100.00100397
..............................................................................................ATAAGGTAGAGATTTTGTTGTCC......................................................................................................................2318.00808
...............................................................................................TAAGGTAGAGATTTTGTTGTCT......................................................................................................................2217.00743
..............................................................................................ATAAGGTAGAGATTTTGTTGTCG......................................................................................................................2315.00505
..............................................................................................ATAAGGTAGAGATTTTGTTG.........................................................................................................................2015.00505
..............................................................................................ATAAGGTAGAGATTTTGTTGTCA......................................................................................................................2312.00202
..............................................................................................ATAAGGTAGAGATTTTGTTGTA.......................................................................................................................2212.00202
..............................................................................................ATAAGGTAGAGATTTTGTTGTCTT.....................................................................................................................2411.00101
..............................................................................................ATAAGGTAGAGATTTTGTCT.........................................................................................................................2011.00101
................................................................................................AAGGTAGAGATTTTGTTGTCT......................................................................................................................2111.00110
...............................................................................................TAAGGTAGAGATTTTGTTGTCTT.....................................................................................................................2311.00101
..............................................................................................ATAAGGTAGAGATTTTGTTGTCTG.....................................................................................................................2411.00110

Generated: 10/20/2015 at 11:19 PM