ID:

dan_236

 Coordinate:

scaffold_12905:396910-396995 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.8 -15.5 -15.4 -15.4

Flybase annnotation

tRNA [Dana\tRNA:GF25537-RA]; exon [Dana\tRNA:GF25537:1]

No Repeatable elements found

mature
  1. dan_236  scaffold_12905:396911-396929 -
  2. scaffold_13469:703071-703089 -
star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------#########################################################################---
ACGTCAAAGGTTTTTTGACGGATAAACAAATTCGTGATAATGTCGATCTCTAGTTAGACAAAAAGTAACTTCAAACATAATTTGGAGGTTTTCAGCGAGCAAATTAGGATTCCGAAGTAGCTCAGTTGGTTAGAGCACTCGACGCGAAATTGAGAGGTCCCGGGTTCGATTTCTGGCTCGGATGAT
*******************************************************.........((..................((((((((((((((((......((...))......)))).)))))...)))).)))........))************************************ 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V105
male body		 M044
female body
 V055
head
 M058
embryo
 V039
embryo
....................................................................................................................GTAGCTCAATTGGATAGAG................................................... 19 2 2 313.00 626 330 287 0 9 0 0
......................................................................................................................................................TTAGAGGTTCCGGGGTCGA................. 19 3 17 203.00 3451 140 617 2597 93 4 0
..................................................................................................................TAGTAGCTCAGTTGGTTAGA.................................................... 20 1 2 171.00 342 228 97 11 6 0 0
....................................................................................................................GTAGCTCAGTTGGTTAGAG................................................... 19 0 2 163.00 326 270 38 3 8 2 5
....................................................................................................................GTAGCTCAGTTGGTTAGA.................................................... 18 0 2 138.00 276 227 0 11 4 6 28
...............................................................................................................CGGGTGTAGCTCAGTTGGTTAGAGC.................................................. 25 3 2 98.50 197 0 2 195 0 0 0
.................................................................................................................GGTGTAGCTCAGTTGGTTAGAGCGC................................................ 25 3 2 81.00 162 35 115 4 6 1 1
..........................................................................................................................CAGTTGGTTAGAGCACACGC............................................ 20 2 2 59.00 118 18 81 14 5 0 0
..................................................................................................................TAGTAGCTCAGTTGGTTAGAG................................................... 21 1 2 56.50 113 85 24 2 2 0 0
..................................................................................................................TAGTAGCTCAGTTGGTTAGAGC.................................................. 22 1 2 52.50 105 34 60 2 9 0 0
..................................................................................................................TAGTAGCTCAGTTGGTTAG..................................................... 19 1 2 52.50 105 75 17 5 8 0 0
................................................................................................................GGGTGTAGCTCAGTTGGTTAGAGC.................................................. 24 3 2 47.00 94 42 18 32 2 0 0
....................................................................................................................GTAGCTCAGCTGGATAGAG................................................... 19 2 4 46.00 184 101 69 5 9 0 0
................................................................................................................GGGTGTAGCTCAGTTGGTTAGAG................................................... 23 3 2 36.00 72 53 6 7 5 0 1
...................................................................................................................CGTAGCTCAATTGGATAGAG................................................... 20 3 7 35.00 245 100 137 1 7 0 0
...................................................................................................................AGTAGCTCAGTTGGTTAGA.................................................... 19 0 2 33.50 67 50 14 1 2 0 0
........................................................................................................................................................AGAGGTTCCGGGGTCGA................. 17 2 12 32.33 388 0 0 0 388 0 0
................................................................................................................GCTAGTAGCTCAGTTGGTTAGAGCAC................................................ 26 3 2 32.00 64 32 26 3 3 0 0
..........................................................................................................................CAGTTGGTTAGAGCACACG............................................. 19 1 2 30.00 60 10 47 2 1 0 0
.................................................................................................................GGTGTAGCTCAGTTGGTTAGAG................................................... 22 2 2 29.50 59 40 5 12 0 2 0
..................................................................................................................GTGTAGCTCAGTTGGTTAGA.................................................... 20 2 2 29.00 58 28 6 23 0 0 1
................................................................................................................GGGTGTAGCTCAGTTGGTTAGA.................................................... 22 3 2 27.50 55 30 9 16 0 0 0
..........................................................................................................................CAGTTGGTTAGAGCACACGCT........................................... 21 3 2 26.50 53 22 24 5 2 0 0
....................................................................................................................GTAGCTCAGTTGGTTAGAGC.................................................. 20 0 2 25.50 51 10 30 1 10 0 0
...................................................................................................................TGTAGCTCAGTTGGTTAGA.................................................... 19 1 2 25.00 50 38 9 1 1 0 1
.................................................................................................................GGTGTAGCTCAGTTGGTTAGAGC.................................................. 23 2 2 23.50 47 35 5 5 2 0 0
....................................................................................................................GTAGCTCAATTGGCTAGAG................................................... 19 2 2 23.00 46 38 7 0 0 1 0
....................................................................................................................GTAGCTCAATTGGTTAGAG................................................... 19 1 2 22.00 44 40 3 0 1 0 0
...............................................................................................................CGGGTGTAGCTCAGTTGGTTAGAG................................................... 24 3 2 21.50 43 0 0 43 0 0 0
...................................................................................................................TGTAGCTCAGTTGGTTAGAG................................................... 20 1 2 21.00 42 24 11 3 2 0 2
.................................................................................................................GGTGTAGCTCAGTTGGTTAG..................................................... 20 2 2 20.50 41 30 2 8 1 0 0
....................................................................................................................GTAGCTCAATTGGATAGAGCACC............................................... 23 3 2 20.50 41 21 19 0 1 0 0
.................................................................................................................GGTGTAGCTCAGTTGGTTAGA.................................................... 21 2 2 19.50 39 22 0 16 0 0 1
................................................................................................................GGGTGTAGCTCAGTTGGTTAG..................................................... 21 3 3 17.67 53 42 7 4 0 0 0
..................................................................................................................TAGTAGCTCAGTTGGTTAGAGCA................................................. 23 1 2 17.50 35 11 20 1 3 0 0
...........................................................................................................................AGTTGGTTAGAGCACACGCT........................................... 20 3 5 17.40 87 47 37 1 2 0 0
..................................................................................................................GTGTAGCTCAGTTGGTTAGAG................................................... 21 2 2 16.00 32 9 8 13 1 1 0
................................................................................................................GCTAGTAGCTCAGTTGGTTAGAGCA................................................. 25 3 2 15.50 31 19 9 3 0 0 0
....................................................................................................................GTAGCTCAATTGGATAGAGC.................................................. 20 2 2 15.00 30 12 18 0 0 0 0
..................................................................................................................GTGTAGCTCAGTTGGTTAG..................................................... 19 2 2 13.50 27 13 5 8 1 0 0
.........................................................................................................................TCAGTTGGTTAGAGCACACGCT........................................... 22 3 2 13.50 27 15 12 0 0 0 0
..................................................................................................................GTGTAGCTCAGTTGGTTAGAGC.................................................. 22 2 2 11.50 23 1 15 7 0 0 0
...................................................................................................................AGTAGCTCAGTTGGTTAGAG................................................... 20 0 2 11.00 22 17 3 1 0 1 0
.................................................................................................................CTAGTAGCTCAGTTGGTTAGA.................................................... 21 2 11 10.55 116 76 32 5 3 0 0
....................................................................................................................GTAGCTCAGTTGGTTAGAGCGC................................................ 22 1 2 10.50 21 2 17 2 0 0 0
..................................................................................................................GTGTAGCTCAGTTGGTTAGAGCGC................................................ 24 3 2 10.00 20 0 17 2 1 0 0
....................................................................................................................GTAGCTCAGCTGGATAGAGC.................................................. 20 2 4 9.25 37 15 17 0 5 0 0
....................................................................................................................GTAGCTCAGCTGGATAGA.................................................... 18 2 6 9.17 55 46 0 3 5 1 0
....................................................................................................................GTAGCTCAGTTGGTTAGAGCGCC............................................... 23 2 11 9.09 100 11 87 1 1 0 0
...............................................................................................................CGGGTGTAGCTCAGTTGGTTAGA.................................................... 23 3 2 9.00 18 0 1 17 0 0 0
....................................................................................................................GTAGCTCAGCTGGCTAGAGC.................................................. 20 2 4 8.50 34 8 15 7 4 0 0
.......................................................................................................................................................GAGAGGTTCCGGGGTCGA................. 18 2 5 8.20 41 0 0 40 1 0 0
.................................................................................................................GAAGTAGCTCAGCTTGGTAGA.................................................... 21 3 4 8.00 32 1 18 11 2 0 0
....................................................................................................................GTAGCTCAATTGGATAGA.................................................... 18 2 9 8.00 72 56 0 10 6 0 0
....................................................................................................................GTAGCTCAGCTGGCTAGAG................................................... 19 2 4 7.75 31 14 8 5 4 0 0
................................................................................................................GCTAGTAGCTCAGTTGGTTAGAGC.................................................. 24 3 11 7.64 84 56 20 6 2 0 0
....................................................................................................................GTAGCTCAATTGGATAGAGCA................................................. 21 2 2 7.50 15 4 10 0 1 0 0
..........................................................................................................................CAGTTGGTTAGAGCACAC.............................................. 18 1 2 7.00 14 6 1 6 1 0 0
.................................................................................................................CTAGTAGCTCAGTTGGTTAGAGCACA............................................... 26 3 2 7.00 14 2 11 1 0 0 0
...............................................................................................................CGGGTGTAGCTCAGTTGGTTAG..................................................... 22 3 2 7.00 14 0 0 14 0 0 0
............................................................................................................................GTTGGTTAGAGCACACGCT........................................... 19 3 9 7.00 63 47 13 1 2 0 0
...........................................................................................................................AGTTGGTTAGAGCACACGC............................................ 19 2 3 7.00 21 3 9 8 1 0 0
................................................................................................................GCTAGTAGCTCAGTTGGTTAGAG................................................... 23 3 11 6.82 75 64 6 5 0 0 0
...................................................................................................................CGTAGCTCAATTGGATAGAGC.................................................. 21 3 3 6.67 20 5 12 2 1 0 0
...................................................................................................................CGTAGCTCAATTGGTTAGAG................................................... 20 2 3 6.67 20 15 5 0 0 0 0
...................................................................................................................TGTAGCTCAGTTGGTTAG..................................................... 18 1 2 6.50 13 13 0 0 0 0 0
.......................................................................................................................GCTCAGTTGGTTAGAGCACACGC............................................ 23 2 2 6.50 13 9 4 0 0 0 0
.................................................................................................................CTAGTAGCTCAGTTGGTTAGAGCA................................................. 24 2 2 6.50 13 3 9 0 1 0 0
...................................................................................................................CGTAGCTCAGCTGGATAGAG................................................... 20 3 15 5.87 88 24 60 0 3 0 1
...................................................................................................................TGTAGCTCAGTTGGTTAGAGCGC................................................ 23 2 2 5.50 11 1 9 0 1 0 0
.........................................................................................................................TCAGTTGGTTAGAGCACACG............................................. 20 1 2 5.50 11 3 6 1 1 0 0
........................................................................................................................CTCAGTTGGTTAGAGCACA............................................... 19 1 2 5.00 10 8 2 0 0 0 0
....................................................................................................................GTAGCTCAGTCGGTTAGAGC.................................................. 20 1 2 5.00 10 0 1 0 6 3 0
........................................................................................................................CTCAGTTGGTTAGAGCAGA............................................... 19 2 2 5.00 10 0 10 0 0 0 0
.................................................................................................................CTAGTAGCTCAGTTGGTTAGAGCAC................................................ 25 2 2 5.00 10 4 1 5 0 0 0
.........................................................................................................................TCAGTTGGTTAGAGCACA............................................... 18 1 2 4.50 9 9 0 0 0 0 0
.....................................................................................................AATTAGGATTCCGAAGTAGCTCAGT............................................................ 25 0 2 4.50 9 0 0 2 0 6 1
...................................................................................................................AGTAGCTCAGTTGGTTAGAGC.................................................. 21 0 2 4.50 9 1 8 0 0 0 0
....................................................................................................................GTAGCTCAATTGGCTAGAGC.................................................. 20 2 2 4.50 9 3 5 0 1 0 0
.................................................................................................................GAAGTAGCTCAGCTTGGTAGAGC.................................................. 23 3 2 4.50 9 1 5 2 1 0 0
...................................................................................................................CGTAGCTCAGCTGGATAGAGC.................................................. 21 3 5 4.40 22 4 12 2 4 0 0
....................................................................................................................GTAGCTCAGCTGGCTAGA.................................................... 18 2 7 4.29 30 1 0 28 1 0 0
.................................................................................................................GAAGTAGCTCAGCTTGGTAGAGCA................................................. 24 3 2 4.00 8 0 4 1 3 0 0
........................................................................................................................CTCAGTTGGTTAGAGCACACGC............................................ 22 2 2 4.00 8 1 7 0 0 0 0
....................................................................................................................GTAGCTCAATTGGTTAGA.................................................... 18 1 2 4.00 8 7 0 0 1 0 0
........................................................................................................TAGGATTCCGAAGTAGCTCAGTTGG......................................................... 25 0 2 4.00 8 0 1 3 0 3 1
....................................................................................................................GTAGCTCAGGTGGTTAGA.................................................... 18 1 2 4.00 8 3 0 1 4 0 0
....................................................................................................................GTAGCTCAGCAGGATAGAG................................................... 19 3 20 3.85 77 39 32 2 4 0 0
....................................................................................................................GTAGCTCAGGTGGTTAGAG................................................... 19 1 2 3.50 7 3 1 1 1 1 0
........................................................................................................................CTCAGTTGGTTAGAGCAGAC.............................................. 20 2 2 3.50 7 0 3 4 0 0 0
.........................................................................................................................TCAGTTGGTTAGAGCACAC.............................................. 19 1 2 3.50 7 2 4 0 1 0 0
....................................................................................................................GTAGCTCAGTTGGTTAGAGCA................................................. 21 0 2 3.50 7 1 6 0 0 0 0
........................................................................................................................CTCAGTTGGTTAGAGCACAC.............................................. 20 1 2 3.50 7 0 6 0 1 0 0
....................................................................................................................GTAGCTCAGCTGGATAGAGCA................................................. 21 2 2 3.00 6 6 0 0 0 0 0
...................................................................................................................AGTAGCTCAGTTGGTTAGAGCACA............................................... 24 1 2 3.00 6 0 5 0 1 0 0
........................................................................................................................................................AGAGGTCTCCGGTTCGATT............... 19 2 3 3.00 9 0 0 7 2 0 0
..............................................................................................................TCCGAAGTAGCTCAGTTGGTTAGAGC.................................................. 26 0 2 3.00 6 0 0 0 0 5 1
......................................................................TCAAACATAATTTGGAGGTTTTCAGC.......................................................................................... 26 0 1 3.00 3 0 0 0 0 2 1
..............................................................................................................TCGGGTGTAGCTCAGTTGGTTAGAGC.................................................. 26 3 2 3.00 6 2 0 4 0 0 0
....................................................................................................................GTAGCTCAGCAGGATAGAGCAC................................................ 22 3 2 3.00 6 0 5 1 0 0 0
...................................................................................................................AGTAGCTCAGTTGGTTAG..................................................... 18 0 2 3.00 6 5 0 0 1 0 0
....................................................................................................................GTAGCTCAGTCGGTTAGAG................................................... 19 1 2 3.00 6 2 2 1 1 0 0
.....................................................................TTCAAACATAATTTGGAGGTTTTCAGC.......................................................................................... 27 0 1 3.00 3 0 0 0 0 3 0
.................................................................................................................GAAGTAGCTCAGCTTGGTAGAG................................................... 22 3 2 3.00 6 1 3 2 0 0 0
..................................................................................................................................TAGAGCACTCGACGCGAAATTGAGAGG............................. 27 0 2 3.00 6 0 1 1 0 4 0
....................................................................................................................GTAGCTCAATTGGATAGAGCAC................................................ 22 2 2 2.50 5 2 1 2 0 0 0
....................................................................................................................GTAGCTCAATTGGTTAGAGC.................................................. 20 1 2 2.50 5 3 2 0 0 0 0
...................................................................................................................AGTAGCTCAGTTGGTTAGAGCA................................................. 22 0 2 2.50 5 1 4 0 0 0 0
..................................................................................................................TAGTAGCTCAGTTGGTTAGAGCAC................................................ 24 1 2 2.50 5 1 3 1 0 0 0
....................................................................................................................GTAGCTCAGTCGGTTAGAGCA................................................. 21 1 2 2.50 5 0 0 0 4 0 1
..............................................................................................................GCCCAAGTAGCTCAGTTGGT........................................................ 20 2 2 2.50 5 1 0 4 0 0 0
...................................................................................................................TGTAGCTCAGTCGGTTAGAGCA................................................. 22 2 2 2.50 5 1 1 0 3 0 0
.....................................................................................................................TAGCTCAGTTGGTTAGAG................................................... 18 0 11 2.45 27 25 0 0 1 1 0
.................................................................................................................CTAGTAGCTCAGTTGGTTAGAG................................................... 22 2 11 2.27 25 19 3 3 0 0 0
.......................................................................................................................................................TAGAGGTCCCGGGGTCGA................. 18 2 4 2.25 9 0 1 7 1 0 0
................................................................................................................GGGTGTAGCTCAGTTGGTTA...................................................... 20 3 5 2.20 11 7 2 1 0 1 0
....................................................................................................AAATTAGGATTCCGAAGTAGCTCAGT............................................................ 26 0 2 2.00 4 0 0 0 0 4 0
..............................................................................................................TCGGGTGTAGCTCAGTTGGTTAG..................................................... 23 3 2 2.00 4 1 0 3 0 0 0
....................................................................................................................GTAGCTCAATTGGCTAGAGCGC................................................ 22 3 2 2.00 4 2 2 0 0 0 0
..............................................................................................................TCGGGTGTAGCTCAGTTGGTTAGAG................................................... 25 3 2 2.00 4 3 0 1 0 0 0
...................................................................................................................AGTAGCTCAGTTGGTTAGAGCAC................................................ 23 0 2 2.00 4 0 3 0 1 0 0
...................................................................................................................CGTAGCTCAATTGGATAGAGCA................................................. 22 3 3 2.00 6 0 6 0 0 0 0
........................................................................................................TAGGATTCCGAAGTAGCTCAGTTGGT........................................................ 26 0 2 2.00 4 0 0 4 0 0 0
..............................................................................................................GCCCAAGTAGCTCAGTTGGTA....................................................... 21 3 17 2.00 34 17 1 13 3 0 0
...............................................................................................................GCGGTGTAGCTCAGTTGGTTAGA.................................................... 23 3 2 2.00 4 1 2 1 0 0 0
.....................................................................................................AATTAGGATTCCGAAGTAGCTCAGC............................................................ 25 1 2 2.00 4 0 0 0 0 4 0
.................................................................................................................GGTGTAGCTCAGTTGGTTAGAGCG................................................. 24 3 2 2.00 4 2 0 0 2 0 0
..............................................................................................................TCCGACATAGCTCAGTTGGT........................................................ 20 2 2 2.00 4 0 1 3 0 0 0
...................................................................................................................TGTAGCTCAATTGGCTAGAGC.................................................. 21 3 3 2.00 6 3 2 0 1 0 0
....................................................................................................................GTAGCTCAGCAGGATAGAGCA................................................. 21 3 3 2.00 6 0 4 0 2 0 0
......................TAAACAAATTCGTGATAATGTCGATC.......................................................................................................................................... 26 0 2 2.00 4 0 0 2 0 2 0
.........................................................................................................................TCAGTTGGTTAGAGCAGAC.............................................. 19 2 4 2.00 8 0 1 7 0 0 0
...................................................................................................................TGTAGCTCAATTGGCTAGAG................................................... 20 3 7 2.00 14 11 1 0 2 0 0
.................................................................................................................CTAGTAGCTCAGTTGGTTAG..................................................... 20 2 11 2.00 22 19 1 2 0 0 0
...................................................................................................................TGTAGCTCAGTCGGTTAGAGC.................................................. 21 2 2 2.00 4 0 0 0 1 2 1
....................................................................................................................GTAGATCAGTTGGTTAGAG................................................... 19 1 2 2.00 4 4 0 0 0 0 0
...................................................................................................................AGTAGCTCAGCTTGGTAGAG................................................... 20 3 7 1.86 13 4 5 2 2 0 0
...................................................................................................................TGTAGCTCAGCTGGCTAGAGC.................................................. 21 3 4 1.75 7 0 4 2 1 0 0
...................................................................................................................AGTAGCTCAGCTTGGTAGAGCA................................................. 22 3 3 1.67 5 0 5 0 0 0 0
.......................................................................................................................................................GAGAGGTCTCCGGTTCGATT............... 20 2 3 1.67 5 0 0 5 0 0 0
..........................................................................................................................CAGTTGGTTAGAGCAGAC.............................................. 18 2 12 1.67 20 0 0 20 0 0 0
...................................................................................................................CGTAGCTCAATTGGATAGAGCAC................................................ 23 3 2 1.50 3 0 1 0 2 0 0
....................................................................................................................GTATCTCAGTTGGTTAGAG................................................... 19 1 2 1.50 3 3 0 0 0 0 0
..................................................................................................................TAGTAGCTCAGTTGGTTATA.................................................... 20 2 2 1.50 3 3 0 0 0 0 0
..........................................................................................................................................TCGACGCGAAATTGAGAGGTCCCGG....................... 25 0 2 1.50 3 0 0 2 0 1 0
.......................................................................................................TTAGGATTCCGAAGTAGCTCAGTTGG......................................................... 26 0 2 1.50 3 0 0 2 0 1 0
....................................................................................................................GTAGCTCAGTTGGTTAGAT................................................... 19 1 2 1.50 3 3 0 0 0 0 0
.....................................................................................................................TAGCTCAGTTGGTTAGAGCAC................................................ 21 0 2 1.50 3 3 0 0 0 0 0
...................................................................................................................CGTAGCTCAGCTGGATAGAGCA................................................. 22 3 2 1.50 3 1 1 0 1 0 0
.......................................................................................................TTAGGATTCCGAAGTAGCTCAGTTGGT........................................................ 27 0 2 1.50 3 0 0 1 0 1 1
....................................................................................................................GTAGCTCAGTTGGATAGAG................................................... 19 1 2 1.50 3 1 2 0 0 0 0
..................................................................................................................TAGTAGCTTAGTTGGTTAGA.................................................... 20 2 2 1.50 3 3 0 0 0 0 0
....................................................................................................................GTAGCTCAGCTTGGTAGAGCAC................................................ 22 3 2 1.50 3 0 3 0 0 0 0
.....................................................................................................................TAGCTCAGTTGGTTAGAGCACTCGA............................................ 25 0 2 1.50 3 0 0 1 0 2 0
..................................................................................................................TAGTAGCTCAGTTGGTTA...................................................... 18 1 2 1.50 3 3 0 0 0 0 0
....................................................................................................................GTAGCTCAATTGGTTAGAGCAGGC.............................................. 24 3 2 1.50 3 2 1 0 0 0 0
......................................................................................................................AGCTCAGTTGGTTAGAGCACACGC............................................ 24 2 2 1.50 3 1 2 0 0 0 0
.....................................................................................................................TAGCTCAGTTGGTTAGAGCACTCGACGC......................................... 28 0 2 1.50 3 0 0 1 0 2 0
...................................................................................................................TGTAGCTCAGTTGGTTAGAGC.................................................. 21 1 2 1.50 3 1 0 0 2 0 0
....................................................................................................................GTAGCTCAGTTGGTTAGAGCACA............................................... 23 1 2 1.50 3 0 3 0 0 0 0
....................................................................................................................GTAGCTCAGGTGGTTAGAGC.................................................. 20 1 2 1.50 3 0 0 0 3 0 0
...................................................................................................................CGTAGCTCAATTGGTTAGA.................................................... 19 2 4 1.50 6 3 2 1 0 0 0
..................................................................................................................TTGTAGCTCAGTCGGTTAGAGCA................................................. 23 3 2 1.50 3 2 0 0 1 0 0
................................................................................................................CCAAGTAGCTCAGTTGGTAG...................................................... 20 3 20 1.40 28 20 7 1 0 0 0
..............................................................................................................TCCGACATAGCTCAGTTGGTA....................................................... 21 3 11 1.36 15 1 1 12 1 0 0
..........................................................................................................................CAGTTGGTTAGAGCAGACG............................................. 19 2 7 1.29 9 0 4 4 1 0 0
.................................................................................................................CTAGTAGCTCAGTTGGTTAGAGC.................................................. 23 2 11 1.27 14 3 8 2 1 0 0
....................................................................................................................GTAGCTCAGCAGGATAGAGC.................................................. 20 3 7 1.14 8 2 6 0 0 0 0
.........................................................................................................................................................GAGGTCTCCGGTTCGATT............... 18 2 9 1.11 10 0 1 7 2 0 0
.....................................................................................................................TAGCTCAATTGGATAGAG................................................... 18 2 13 1.08 14 13 1 0 0 0 0
................................................................................................................GATAGTAGCTCAGTTGGTTAGAGCAC................................................ 26 3 2 1.00 2 1 1 0 0 0 0
..................................................................................................................TAGGAGCTCAGTTGGTTAGAGC.................................................. 22 2 2 1.00 2 0 1 0 1 0 0
.........................................................................AACATAATTTGGAGGTTTTC............................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0
................................................................................................................GGTTGTAGCTCAGTTGGTTAG..................................................... 21 3 2 1.00 2 2 0 0 0 0 0
........................................................................................................................CTCAGTTGGTTAGAGCAGACGGC........................................... 23 3 2 1.00 2 0 1 1 0 0 0
................................................................................TTTGGAGGTTTTCAGCGAGCAAATT................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0
..................................................................................................................TAGTAGCTCAGTAGGTTAGA.................................................... 20 2 2 1.00 2 1 1 0 0 0 0
..................................................................................................................................TAGAGCACTCGACGCGAAATTGAGAG.............................. 26 0 2 1.00 2 0 0 2 0 0 0
....................................................................................................................GTAGCTCAGTCGGTTAGAGCAGTT.............................................. 24 3 2 1.00 2 2 0 0 0 0 0
..................................................................................................................AAGTAGCTCAGCTTGGTAGAG................................................... 21 3 2 1.00 2 1 0 1 0 0 0
...................................................................................................................CGTAGCTCAGTTGGTTAGAG................................................... 20 1 2 1.00 2 1 0 0 1 0 0
...................................................................................................................TGTAGCTCAGTTGGTTAGAGCGCC............................................... 24 3 11 1.00 11 0 9 2 0 0 0
...................................................................................................................AGTAGCTCAGCTTGGTAGAGCAC................................................ 23 3 2 1.00 2 0 2 0 0 0 0
..................................................................................................................TAGCAGCTCAGTTGGTTAGA.................................................... 20 2 2 1.00 2 0 1 0 1 0 0
....................................................................................................................GTAGCTCAGTTGGTTATAG................................................... 19 1 2 1.00 2 1 1 0 0 0 0
..................................................................................................................TAGTAGCTCAGTTGGTTATAG................................................... 21 2 2 1.00 2 1 1 0 0 0 0
.........................................................................................................................TCAGTTGGTTAGAGCACTCGACGC......................................... 24 0 2 1.00 2 0 0 1 0 1 0
.......................................................................................................TGAGGATTCCGAAGTAGCTCAGTTGGC........................................................ 27 2 2 1.00 2 0 0 0 0 2 0
........................................................................................................................................................AGAGGTCTCCGGTTCGAT................ 18 2 8 1.00 8 0 0 3 5 0 0
................................................................................................................GCGAGTAGCTCAGTTGGTTAGAGCAC................................................ 26 3 2 1.00 2 2 0 0 0 0 0
.................................................................................................................GAAGTAGCTCAGCTTGGTAGAGCACT............................................... 26 3 2 1.00 2 0 1 0 1 0 0
.................................................................................................................GGTGTAGCTCAGTTGGTTAGAGCACC............................................... 26 3 2 1.00 2 0 2 0 0 0 0
.............................................................................................................TTCCGAAGTAGCTCAGTTGGTTAGAGC.................................................. 27 0 2 1.00 2 0 0 0 0 2 0
....................................................................................................................GTAGATCAGTTGGTTAGAGC.................................................. 20 1 2 1.00 2 1 1 0 0 0 0
..................................................................................................................GTTTAGCTCAGTTGGTTAGAGCAC................................................ 24 3 2 1.00 2 0 2 0 0 0 0
....................................................................................................................GTAGCTCAGCTGGATAGAGCAA................................................ 22 3 2 1.00 2 2 0 0 0 0 0
...................................................................................................................TGTAGCTCAGTTGGATAGAG................................................... 20 2 2 1.00 2 0 1 0 0 0 1
..............................................................................................................TCCGGCATAGCTCAGTTGGT........................................................ 20 3 7 1.00 7 0 1 6 0 0 0
.............................................................................TAATTTGGAGGTTTTCAGCGAGCAAAT.................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................GGTTGTAGCTCAGTTGGTTAGA.................................................... 22 3 2 1.00 2 2 0 0 0 0 0
.................................................................................................................GATGTAGCTCAGATGGTTAG..................................................... 20 2 2 1.00 2 2 0 0 0 0 0
.........................................................................................................................TCAGTTGGTTAGAGCAGACG............................................. 20 2 2 1.00 2 0 1 1 0 0 0
..................................................................................................................AAGTAGCTCAGCTTGGTAGAGCA................................................. 23 3 2 1.00 2 0 2 0 0 0 0
....................................................................................................................GTAGCTCAGGTGGTTAGAGCGC................................................ 22 2 2 1.00 2 0 1 0 1 0 0
..................................................................................................................AAGTAGCTCAGTTTGGTAGA.................................................... 20 2 2 1.00 2 0 1 1 0 0 0
....................................................................................................................GTAACTCAGTTGGTTAGAG................................................... 19 1 3 1.00 3 0 3 0 0 0 0
................................................................................................................CGAAATAGCTCAGTTGGGAAGAG................................................... 23 3 2 1.00 2 1 0 0 1 0 0
....................................................................................................AAATTAGGATTCCGAAGTAGCTCAGTT........................................................... 27 0 2 1.00 2 0 0 0 0 2 0
.........................................................................AGCATAATTTGGAGGTTTTCAGCGAG....................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0
.................................................................................................................GGGCTAGCTCAGTTGGTTAGAGCAC................................................ 25 3 2 1.00 2 0 1 1 0 0 0
..................................................................................................................TTGTAGCTCAGTCGGTTAGAG................................................... 21 3 4 1.00 4 0 0 0 1 1 2
...........................................................................CATAATTTGGAGGTTTTCAGCGAGC...................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0
....................................................................................................................GTAGCTCAGTTGGTTAGAGCTC................................................ 22 1 2 1.00 2 0 2 0 0 0 0
........................................................................................................................CTCAGTTGGTTAGAGCACACG............................................. 21 1 2 1.00 2 0 2 0 0 0 0
....................................................................................................................GTAGCTCAGTTGGTTAGAGCAC................................................ 22 0 2 1.00 2 2 0 0 0 0 0
...................................................................................................................TGTAGCTCAGGTGGTTAGAG................................................... 20 2 2 1.00 2 0 0 0 0 0 2
........................................................................................................................CTCAGTTGGTTAGAGCAG................................................ 18 1 2 1.00 2 0 1 0 1 0 0
............................................................................ATAATTTGGAGGTTTTCAGCGAGCAAA................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0
..............................................................................................................TCCGAAGTAGCTCAGTTGGTTAGAG................................................... 25 0 2 1.00 2 0 0 1 0 0 1
........................................................................................................................CTCAGTTGGTTAGAGCTAT............................................... 19 2 2 1.00 2 0 2 0 0 0 0
................................................................................................................GATAGTAGCTCAGTTGGTTAGAG................................................... 23 3 2 1.00 2 2 0 0 0 0 0
..................................................................................................................TAGTAGCTCAGTTGGCTAGAG................................................... 21 2 2 1.00 2 2 0 0 0 0 0
......................................................................................................................................................TTAGAGGTCCCGGGGTCGA................. 19 2 3 1.00 3 0 1 2 0 0 0
....................................................................................................................GTGGCTCAGTTGGTTAGAG................................................... 19 1 2 1.00 2 2 0 0 0 0 0
.................................................................................................................GGTGTAGCTCAGTTGGTTATAG................................................... 22 3 2 1.00 2 1 0 0 1 0 0
................................................................................................................CCAAGTAGCTCAGTTGGTA....................................................... 19 2 2 1.00 2 2 0 0 0 0 0
......................TAAACAAATTCGTGATAATGTCGATCTC........................................................................................................................................ 28 0 2 1.00 2 0 0 2 0 0 0
...................................................................................................................AGTAGCTCAGCTTGGTAGAGCACT............................................... 24 3 2 1.00 2 0 2 0 0 0 0
..........................................................................................................................................TCGACGCGAAATTGAGAGGTCCCG........................ 24 0 2 1.00 2 0 0 0 0 2 0
...............................................................................................................CCCAAGTAGCTCAGTTGGTA....................................................... 20 2 2 1.00 2 0 0 2 0 0 0
..................................................................................................................TAGTAGCTCAGTTGGATAGA.................................................... 20 2 2 1.00 2 1 1 0 0 0 0
...................................................................................................................................AGAGCACTCGACGCGAAATTGAGAGG............................. 26 0 2 1.00 2 0 0 1 0 0 1
......................................................................TGAAACATAATTTGGAGGTTTTCAGC.......................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0
.................................................................................................................GGCGTAGCTCAGTTGGTTAGAGCGC................................................ 25 3 2 1.00 2 1 1 0 0 0 0
........................................................................................................................CTCAGTCGGTTAGAGCAGT............................................... 19 2 2 1.00 2 1 0 0 1 0 0
..................................................................................................................TAGTAGCTCAGTTGGTTAGG.................................................... 20 2 2 1.00 2 1 1 0 0 0 0
.....................................................................................................AATTAGGATTCCGAAGTAGCTCAGTT........................................................... 26 0 2 1.00 2 0 0 0 0 2 0
..................................................................................................GCAAATTAGGATTCCGAAGTAGCTCAGT............................................................ 28 0 2 1.00 2 0 0 0 0 2 0
....................................................................................................................GTAGCTCAGTTGGTCAGA.................................................... 18 1 2 1.00 2 2 0 0 0 0 0
.....................................................................................................................TAGCTCAGTTGGTTAGAGCACTCGACG.......................................... 27 0 2 1.00 2 0 0 1 0 1 0
...............................................................................................................GCGGTGTAGCTCAGTTGGTTAGAGC.................................................. 25 3 2 1.00 2 0 0 2 0 0 0
................................................................................................................GCTAGTAGCTCAGTTGGTTAG..................................................... 21 3 13 0.85 11 8 1 1 1 0 0
.................................................................................................................GAAGTAGCTCAGCTTGGTAG..................................................... 20 3 12 0.83 10 0 2 8 0 0 0
....................................................................................................................GTAGCTCAATTGGTTAGAGCG................................................. 21 2 11 0.73 8 2 6 0 0 0 0
............................................................................................................................GTTGGTTAGAGCACACGC............................................ 18 2 7 0.71 5 2 0 1 2 0 0
..................................................................................................................AAGTAGCTCAGCTTGGTAGA.................................................... 20 3 19 0.68 13 4 5 3 1 0 0
.......................................................................................................................GCTCAGCTGGATAGAGTACTCG............................................. 22 3 3 0.67 2 0 0 2 0 0 0
..................................................................................................................TAGTAGATCAGTTGGTTAGA.................................................... 20 2 3 0.67 2 2 0 0 0 0 0
...................................................................................................................AGTAGCTCAGCTTGGTAGAGC.................................................. 21 3 6 0.67 4 1 1 1 0 1 0
...................................................................................................................TGTAGCTCAGTCGGTTAG..................................................... 18 2 3 0.67 2 1 0 0 0 0 1
..................................................................................................................TTGTAGCTCAGTCGGTTAGAGC.................................................. 22 3 3 0.67 2 0 0 0 1 1 0
...........................................................................................................................AGTTGGTTAGAGCAGACG............................................. 18 2 8 0.63 5 0 0 5 0 0 0
..........................................................................................................................CAGTTGGTTAGAGCGCAC.............................................. 18 2 5 0.60 3 0 0 0 0 3 0
..................................................................................................................TAGTATCTCAGTTGGTTAGA.................................................... 20 2 7 0.57 4 4 0 0 0 0 0
...................................................................................................................TGTAGCTCAGCTGGCTAGAG................................................... 20 3 7 0.57 4 1 1 1 1 0 0
................................................................................................................GCTAGTAGCTCAGTTGGTTAGA.................................................... 22 3 11 0.55 6 2 1 3 0 0 0
......................................................................................................................AGCTCAGTCGGTTAGAGC.................................................. 18 1 11 0.55 6 0 0 0 2 4 0
........................................................................................................................CTCAGTTGGTTAGAGCGC................................................ 18 1 11 0.55 6 5 1 0 0 0 0
.......................................................................................................................................................TAGAGGTTCCGGGTTCGA................. 18 2 15 0.53 8 0 3 4 1 0 0
....................................................................................................................GTAGCTCAGTTGGTTAGAGCACCGGC............................................ 26 3 2 0.50 1 0 1 0 0 0 0
..................................................................................................................TAGTAGCTCAGTGGGTTAGA.................................................... 20 2 2 0.50 1 0 1 0 0 0 0
....................................................................................................................GTAGCTCAGTTGGTTAGAGCCCC............................................... 23 2 2 0.50 1 1 0 0 0 0 0
..................................................TAGTTAGACAAAAAGTAACT.................................................................................................................... 20 0 2 0.50 1 0 0 0 0 1 0
..................................................................................................................TAGTAGCTCAGTTGGTTAAA.................................................... 20 2 2 0.50 1 0 1 0 0 0 0
.................................................................................................................GGTGTAGCACAGTTGGTTAGAG................................................... 22 3 2 0.50 1 0 0 1 0 0 0
.........................................................................................................................TCAGTTGGTTAGAGCACC............................................... 18 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................................AGGAGCTCAGTTGGTTAGAGCACA............................................... 24 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................................GTAGCTCAGTTGATTAGAG................................................... 19 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................................GTAGCTCAGTTGTTTAGAG................................................... 19 1 2 0.50 1 0 1 0 0 0 0
................................................................................................................GGGCGTAGCTCAGTTGGTTAGAGC.................................................. 24 3 2 0.50 1 0 1 0 0 0 0
...................................................................................................................AGTAGCTCAGTTGGTTAGAGCACAC.............................................. 25 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................CTAGTAGCTCAGTTGGTTAGAGCACACG............................................. 28 3 2 0.50 1 0 0 1 0 0 0
....................................................................................................................GTAGCTCACTTGGTTAGAG................................................... 19 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................................GTAGCTCAGTTGGTTGGA.................................................... 18 1 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................TCGACGCGAAATTGAGAGGTCCCGGGT..................... 27 0 2 0.50 1 0 0 0 0 1 0
....................................................................................................................GTAGCTCAGTTGGGTAGAG................................................... 19 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................................GTATCTCAGTTGGTTAGAGC.................................................. 20 1 2 0.50 1 0 1 0 0 0 0
...................................................................................................................AGTAGCTCAGTTGGTTAGAGCACACGC............................................ 27 2 2 0.50 1 0 1 0 0 0 0
........................................................................................................................CTCAGTTGGTTAGAGCACT............................................... 19 0 2 0.50 1 0 1 0 0 0 0
.........................................................................................................................TCAGTTGGTTAGAGCACACGC............................................ 21 2 2 0.50 1 0 1 0 0 0 0
..............................................................................................................TCCGAAGTAGCTCAGTTGGTTAGAT................................................... 25 1 2 0.50 1 0 0 0 0 0 1
....................................................................................................................GTAGCTCAGTCGGTTAGATCA................................................. 21 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................................GTAGCTCAGGTGGTTAGAGCGCA............................................... 23 3 2 0.50 1 0 0 0 0 0 1
...................................................................................................................AGTAGCTCAGTTTGTTAGA.................................................... 19 1 2 0.50 1 0 1 0 0 0 0
..................................................................................................................TAGTAGATCAGTTGGTTAGAAC.................................................. 22 3 2 0.50 1 0 1 0 0 0 0
..................................................................................................................TAGTAGCTTAGTTGGTTAGAGC.................................................. 22 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................................GTAGCTCAGACGGTTAGAGC.................................................. 20 2 2 0.50 1 0 0 0 1 0 0
....................................................................................................................GTAGCTCAGTTGGTTAGAGCT................................................. 21 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TTTCAGCGAGCAAATTAGGATTCCG........................................................................ 25 0 2 0.50 1 0 0 1 0 0 0
.......................................................................................................................................................GAGAGGTCTCCGGTTCGAT................ 19 2 4 0.50 2 0 1 0 1 0 0
..................................................................................................................TAGTAGCTCAGTTGGTTAGAGCACA............................................... 25 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................AATTGAGAGGTCCCGGGTTCGA................. 22 0 2 0.50 1 0 0 1 0 0 0
.................................................................................................................GGTGTAGCTCCGTTGGTTAGAG................................................... 22 3 2 0.50 1 0 0 0 0 0 1
.........................................................................................TTTCAGCGAGCAAATTAGGATTCC......................................................................... 24 0 2 0.50 1 0 0 0 0 1 0
...................................................................................................................TGTAGCTCAGTTGGTTAGAGCGCA............................................... 24 3 2 0.50 1 1 0 0 0 0 0
....................................................................................................AGATTAGGATTCCGAAGTAGCTCAGT............................................................ 26 1 2 0.50 1 0 0 0 0 1 0
..................................................................................................................TAGTGGCTCAGTTGGTTAGAG................................................... 21 2 2 0.50 1 1 0 0 0 0 0
........................................................................................................................CTCAGTTGGTCAGAGCAGAC.............................................. 20 3 6 0.50 3 0 2 1 0 0 0
..................................................................................................................TAGTAGCCCAGTTGGTTAGAG................................................... 21 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................................TAGTAGCTCAGTTGGTTAGCG................................................... 21 2 2 0.50 1 0 0 0 1 0 0
...........................................................................................................................AGTTGGTTAGAGCACACG............................................. 18 1 2 0.50 1 0 0 1 0 0 0

Anti-sense strand reads

TGCAGTTTCCAAAAAACTGCCTATTTGTTTAAGCACTATTACAGCTAGAGATCAATCTGTTTTTCATTGAAGTTTGTATTAAACCTCCAAAAGTCGCTCGTTTAATCCTAAGGCTTCATCGAGTCAACCAATCTCGTGAGCTGCGCTTTAACTCTCCAGGGCCCAAGCTAAAGACCGAGCCTACTA
************************************.........((..................((((((((((((((((......((...))......)))).)))))...)))).)))........))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V106
head
 V055
head
 V105
male body
.......................................................................................................................CGAGTCAGCCAATCTCGTCAGG............................................. 22 3 2 2.00 4 4 0 0 0 0 0
.......................................................................................CAAAAGTCGCTCGTTTAATCCTAAGG......................................................................... 26 0 2 1.00 2 1 1 0 0 0 0
.........................................................................TTGTATTAAACCTCCAAAAGTCGCT........................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................CGCTCGTTTAATCCTAAGGCTTCAT................................................................... 25 0 2 1.00 2 0 2 0 0 0 0
...................................................................................................................CCATCGAGTCAGCCAATCT.................................................... 19 2 2 1.00 2 1 1 0 0 0 0
...................................................................................................................ACATCGAGTCAGCCAATC..................................................... 18 2 3 0.67 2 0 0 1 0 0 1
..................................................................................ACCTCCAAAAGTCGCTCGTTTAATCCT............................................................................. 27 0 2 0.50 1 0 1 0 0 0 0
.....................................................................................................................................TCGTGAGCTGCGCTTTAACTCTCCA............................ 25 0 2 0.50 1 0 1 0 0 0 0
.....................................................................................................................ATCGAGTCCACCAATCTCGCGTGC............................................. 24 3 2 0.50 1 0 0 0 0 1 0
.......................................................................................................................................................CTCTCCAGGGCCCAAGCTAAAGAC........... 24 0 2 0.50 1 0 1 0 0 0 0
...AGTTTCCAAAAAACTGCCTATTTGTTT............................................................................................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................CATCGAGTCAGCCAATCT.................................................... 18 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................CTTCATCGAGTCAACCAATC..................................................... 20 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................CATCGAGTCAGCCAATCTCG.................................................. 20 1 2 0.50 1 0 1 0 0 0 0
....................................................................................................................................CTCGTGAGCTGCGCTTTAACTCTCCAG........................... 27 0 2 0.50 1 1 0 0 0 0 0
.............................................................................................TCGCTCGTTTAATCCTAAGGCT....................................................................... 22 0 2 0.50 1 0 1 0 0 0 0
.....................................................................................................TTAATCCTAAGGCTTCATCGAGTCAAC.......................................................... 27 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................CGAGTCAGCCAATCTCGTCAT.............................................. 21 3 2 0.50 1 1 0 0 0 0 0
.............................................................................................................AAGGCTTCATCGAGTCAACCAAT...................................................... 23 0 2 0.50 1 0 1 0 0 0 0
..............................................................................................CGCTCGTTTAATCCTAAGGCTTCATC.................................................................. 26 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................CCTAAGGCTTCATCGAGTCAACCAA....................................................... 25 0 2 0.50 1 0 1 0 0 0 0
..............................AAGCACTATTACAGCTAGAGATCAAT.................................................................................................................................. 26 0 2 0.50 1 0 0 1 0 0 0
............................................................................................................................................................CAGGGCCCAAGCTAAAGACC.......... 20 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................TCGAGTCCACCAATCTCGCGTGC............................................. 23 3 2 0.50 1 0 0 0 1 0 0
............................................................................................................................................................CAGGGCCCAAGCTAAAGACCGAGCCT.... 26 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................CGAGTCAGCCAATCTCGTCAA.............................................. 21 3 9 0.44 4 1 1 2 0 0 0
.......................................................................................................................CGAGTCAGCCAATCTCGTCAAC............................................. 22 3 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................CGAGTCCACCAATCTCGCGTGC............................................. 22 3 3 0.33 1 0 0 0 1 0 0
...................................................................................................................CCATCGAGTCAGCCAATC..................................................... 18 2 10 0.20 2 1 1 0 0 0 0
.................TGGCTATTTGTTCAAGCAGT..................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 1 0
.......................................................................................................................CGAGTCAGCCAGTCTCGTCA............................................... 20 3 10 0.10 1 0 1 0 0 0 0
.................................................................................................TCGTTTAGTCATAGGGCTTCA.................................................................... 21 3 14 0.07 1 0 0 0 0 1 0
..........................................................................................................................................................CCCAGGGCCCAAGCAAAAAA............ 20 3 15 0.07 1 1 0 0 0 0 0
..............................................AGAGATCAATGGGTCTTTC......................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
..............AGATGCCTATTTGGTTAAG......................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
.......................ATTGTTTAAGCACTATAA................................................................................................................................................. 18 2 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12905:396860-397045 - dan_236 ACGTCAAAGGTTTTTTGACGGATAAACAAATTCGTGATAATGTCGATCTCTAGTTAGACAAAAAGTAACTTCAAACATAATTTGGAGGTTTTCAGCGAGCAAATTAGGATTCCGAAGTAGCTCAGTTGGTTAGAGCACTCGACGCGAAATTGAGAGGTCCCGGGTTCGATTTCTGGCTCGGATGAT
droEle1 scf7180000487093:2461-2646 - ACGTCAAAGGTTTTTTGACGGATAAACAAATTCGTGATAATGTCGATCTCTAGTTAGACAAAAAGTAACTTCAAACATAAATTGGAGGTTTTCAGCGAGCAAATTAGGATTCCGAAGTAGCTCAGTTGGTTAGAGCACTCCACGCGAAATTGAGAGGTCCCGGGTTCGATTTCTGGCTCGGATGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACGTCAAAGGTTTTTTGACGGATAAACAAATTCGTGATAATGTCGATCTCTAGTTAGACAAAAAGTAACTTCAAACATAATTTGGAGGTTTTCAGCGAGCAAATTAGGATTCCGAAGTAGCTCAGTTGGTTAGAGCACTCGACGCGAAATTGAGAGGTCCCGGGTTCGATTTCTGGCTCGGATGATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................GTAGCTCAGTTGGTTAGAG...................................................192163.00326325838270
....................................................................................................................GTAGCTCAGTTGGTTAGA....................................................182138.002761162840227
...................................................................................................................AGTAGCTCAGTTGGTTAGA....................................................19233.506710021450
....................................................................................................................GTAGCTCAGTTGGTTAGAGC..................................................20225.5051100103010
...................................................................................................................AGTAGCTCAGTTGGTTAGAG...................................................20211.00221100317
........................................................................................................................CTCAGTTGGTTAGAGCACA...............................................1925.0010000028
........................................................................................................................CTCAGTTGGTTAGAGCAGA...............................................1925.00100000100
.........................................................................................................................TCAGTTGGTTAGAGCACA...............................................1824.509000009
.....................................................................................................AATTAGGATTCCGAAGTAGCTCAGT............................................................2524.509261000
...................................................................................................................AGTAGCTCAGTTGGTTAGAGC..................................................2124.509000081
........................................................................................................TAGGATTCCGAAGTAGCTCAGTTGG.........................................................2524.008331010
....................................................................................................................GTAGCTCAGTTGGTTAGAGCA.................................................2123.507000061
...................................................................................................................AGTAGCTCAGTTGGTTAGAGCACA...............................................2423.006000150
..............................................................................................................TCCGAAGTAGCTCAGTTGGTTAGAGC..................................................2623.006051000
......................................................................TCAAACATAATTTGGAGGTTTTCAGC..........................................................................................2613.003021000
...................................................................................................................AGTAGCTCAGTTGGTTAG.....................................................1823.006000105
.....................................................................TTCAAACATAATTTGGAGGTTTTCAGC..........................................................................................2713.003030000
..................................................................................................................................TAGAGCACTCGACGCGAAATTGAGAGG.............................2723.006140010
...................................................................................................................AGTAGCTCAGTTGGTTAGAGCA.................................................2222.505000041
.....................................................................................................................TAGCTCAGTTGGTTAGAG...................................................18112.45270101025
....................................................................................................AAATTAGGATTCCGAAGTAGCTCAGT............................................................2622.004040000
...................................................................................................................AGTAGCTCAGTTGGTTAGAGCAC................................................2322.004000130
........................................................................................................TAGGATTCCGAAGTAGCTCAGTTGGT........................................................2622.004400000
.....................................................................................................AATTAGGATTCCGAAGTAGCTCAGC............................................................2522.004040000
......................TAAACAAATTCGTGATAATGTCGATC..........................................................................................................................................2622.004220000
..........................................................................................................................................TCGACGCGAAATTGAGAGGTCCCGG.......................2521.503210000
.......................................................................................................TTAGGATTCCGAAGTAGCTCAGTTGG.........................................................2621.503210000
....................................................................................................................GTAGCTCAGTTGGTTAGAT...................................................1921.503000003
.....................................................................................................................TAGCTCAGTTGGTTAGAGCAC................................................2121.503000003
.......................................................................................................TTAGGATTCCGAAGTAGCTCAGTTGGT........................................................2721.503111000
.....................................................................................................................TAGCTCAGTTGGTTAGAGCACTCGA............................................2521.503120000
.....................................................................................................................TAGCTCAGTTGGTTAGAGCACTCGACGC.........................................2821.503120000
....................................................................................................................GTAGCTCAGTTGGTTAGAGCACA...............................................2321.503000030
.........................................................................AACATAATTTGGAGGTTTTC.............................................................................................2011.001010000
................................................................................TTTGGAGGTTTTCAGCGAGCAAATT.................................................................................2511.001010000
..................................................................................................................................TAGAGCACTCGACGCGAAATTGAGAG..............................2621.002200000
.........................................................................................................................TCAGTTGGTTAGAGCACTCGACGC.........................................2421.002110000
.............................................................................................................TTCCGAAGTAGCTCAGTTGGTTAGAGC..................................................2721.002020000
.............................................................................TAATTTGGAGGTTTTCAGCGAGCAAAT..................................................................................2711.001100000
....................................................................................................AAATTAGGATTCCGAAGTAGCTCAGTT...........................................................2721.002020000
...........................................................................CATAATTTGGAGGTTTTCAGCGAGC......................................................................................2511.001010000
....................................................................................................................GTAGCTCAGTTGGTTAGAGCAC................................................2221.002000002
........................................................................................................................CTCAGTTGGTTAGAGCAG................................................1821.002000110
............................................................................ATAATTTGGAGGTTTTCAGCGAGCAAA...................................................................................2711.001010000
..............................................................................................................TCCGAAGTAGCTCAGTTGGTTAGAG...................................................2521.002101000
......................TAAACAAATTCGTGATAATGTCGATCTC........................................................................................................................................2821.002200000
..........................................................................................................................................TCGACGCGAAATTGAGAGGTCCCG........................2421.002020000
...................................................................................................................................AGAGCACTCGACGCGAAATTGAGAGG.............................2621.002101000
.....................................................................................................AATTAGGATTCCGAAGTAGCTCAGTT...........................................................2621.002020000
..................................................................................................GCAAATTAGGATTCCGAAGTAGCTCAGT............................................................2821.002020000
.....................................................................................................................TAGCTCAGTTGGTTAGAGCACTCGACG..........................................2721.002110000
..................................................TAGTTAGACAAAAAGTAACT....................................................................................................................2020.501010000
.........................................................................................................................TCAGTTGGTTAGAGCACC...............................................1820.501000001
..........................................................................................................................................TCGACGCGAAATTGAGAGGTCCCGGGT.....................2720.501010000
........................................................................................................................CTCAGTTGGTTAGAGCACT...............................................1920.501000010
..............................................................................................................TCCGAAGTAGCTCAGTTGGTTAGAT...................................................2520.501001000
....................................................................................................................GTAGCTCAGTTGGTTAGAGCT.................................................2120.501000001
.........................................................................................TTTCAGCGAGCAAATTAGGATTCCG........................................................................2520.501100000
...................................................................................................................................................AATTGAGAGGTCCCGGGTTCGA.................2220.501100000
.........................................................................................TTTCAGCGAGCAAATTAGGATTCC.........................................................................2420.501010000
droEle1
ACGTCAAAGGTTTTTTGACGGATAAACAAATTCGTGATAATGTCGATCTCTAGTTAGACAAAAAGTAACTTCAAACATAAATTGGAGGTTTTCAGCGAGCAAATTAGGATTCCGAAGTAGCTCAGTTGGTTAGAGCACTCCACGCGAAATTGAGAGGTCCCGGGTTCGATTTCTGGCTCGGATGATSizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 03:07 PM