ID:

dan_234

 Coordinate:

scaffold_13266:15973379-15973426 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.0 -9.4 -9.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Hoana6DNAhAT-Ac+
mature
  1. scaffold_2729:848-868 -
  2. dan_3897  scaffold_5834:29-49 -
  3. dan_3894  scaffold_5834:138-158 +
  4. scaffold_8577:3478-3498 +
  5. scaffold_12984:754431-754451 -
  6. scaffold_13030:88-108 +
  7. scaffold_13248:1394603-1394623 +
  8. scaffold_13260:1224391-1224411 -
  9. dan_234  scaffold_13266:15973406-15973426 -
  10. dan_3754  scaffold_13266:15973515-15973535 +
  11. dan_3494  scaffold_13337:7167710-7167730 -
  12. dan_3487  scaffold_13337:7167819-7167839 +
  13. dan_3862  scaffold_13340:10535081-10535101 +
  14. dan_3878  scaffold_13340:10781765-10781785 -
  15. dan_3874  scaffold_13340:10781874-10781894 +
star
  1. dan_3890  scaffold_5691:353-373 +
  2. dan_3894  scaffold_5834:164-184 +
  3. scaffold_9062:568-588 -
  4. scaffold_10263:1163-1183 -
  5. scaffold_13030:114-134 +
  6. dan_3964  scaffold_13137:1179529-1179549 -
  7. scaffold_13248:1394629-1394649 +
  8. scaffold_13260:1224365-1224385 -
  9. dan_234  scaffold_13266:15973380-15973400 -
  10. dan_3754  scaffold_13266:15973541-15973561 +
  11. dan_3487  scaffold_13337:7167845-7167865 +
  12. scaffold_13339:1772146-1772166 +
  13. dan_3867  scaffold_13340:10534946-10534966 -
  14. dan_3874  scaffold_13340:10781900-10781920 +

Sense Strand Reads

CCTAGTCTAAGGTTTTAGCAGGTATAACTTAGAACAGAAAATACTAACCGTTGAGGCTATAGCATTGAACTCATGTTACAATATTAGTCGTCAGTGTACCTATTTAGAAATTATTTGATTGATCATAAGAAGATTTTGTGAATTATTT
***********************************.............(((((((((((....(((((((....))).))))..))))).))))))................************************************ 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 V105
male body		 M058
embryo
 V055
head
 V039
embryo
..................................................TTGAGGCTATAGCATTGAACT............................................................................. 21 0 15 48.40 726 284 329 81 17 13 2
............................................................................TACAATATTAGTCGTCAGTGT................................................... 21 0 14 20.07 281 61 41 145 17 13 4
.............................................................................ACAATATTAGTCGTCAGTGTA.................................................. 21 0 14 10.57 148 58 21 59 3 7 0
...................................................TGAGGCTATAGCATTGAACTC............................................................................ 21 0 15 7.80 117 85 17 1 4 8 2
.....................................AAAATACTAACCGTTGAGGCT.......................................................................................... 21 0 5 2.60 13 3 2 0 7 1 0
...................................................TGAGGCTATAGCATTGAACT............................................................................. 20 0 15 2.33 35 32 2 1 0 0 0
............................................................................TACAATATTAGTCGTCAGTG.................................................... 20 0 14 2.21 31 9 5 15 2 0 0
...............TAGCAGGTATAACTTAGAACAGA.............................................................................................................. 23 0 6 1.83 11 1 2 0 6 1 1
...........................................................................TTACAATATTAGTCGTCAGTG.................................................... 21 0 14 1.79 25 5 9 11 0 0 0
..............................AGAACAGAAAATACTAACCGT................................................................................................. 21 0 4 1.50 6 0 4 1 0 0 1
.............................................................................ACAATATTAGTCGTCAGTGT................................................... 20 0 14 1.36 19 7 3 7 2 0 0
............................TTAGAACAGAAAATACTAACC................................................................................................... 21 0 4 1.25 5 1 0 0 4 0 0
............TTTTAGCAGGTATAACTTAGAAC................................................................................................................. 23 0 6 1.17 7 1 1 0 4 0 1
............................................................................TACAATATTAGTCGTCAGTGTA.................................................. 22 0 14 1.07 15 5 0 8 1 1 0
..................................................TTGAGGCTGTAGCATTGAACT............................................................................. 21 1 15 1.07 16 14 1 1 0 0 0
.........................................................................TGTTACAATTTTAGTCGTCAGT..................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.....................................................AGGCTATAGCATTGAACTCAT.......................................................................... 21 0 15 0.73 11 10 1 0 0 0 0
...............TAGCAGGTATAACTTAGAACAG............................................................................................................... 22 0 6 0.67 4 2 0 0 1 1 0
..................................................TTGAGGCTATAGCATTGAAC.............................................................................. 20 0 15 0.67 10 6 0 1 2 0 1
....................................................GAGGCTATAGCATTGAACTC............................................................................ 20 0 15 0.60 9 9 0 0 0 0 0
.......................................AATACTAACCGTTGAGGCTATA....................................................................................... 22 0 5 0.60 3 3 0 0 0 0 0
.....................................AAAATACTAACCGTTGAGGCC.......................................................................................... 21 1 5 0.60 3 0 0 0 3 0 0
.................................ACAGAAAATACTAACCGTTGA.............................................................................................. 21 0 5 0.60 3 0 0 0 2 0 1
......................................AAATACTAACCGTTGAGGCTA......................................................................................... 21 0 5 0.60 3 1 1 0 1 0 0
............................................................................TACAATATTAGTCGTCAGTGC................................................... 21 1 14 0.57 8 0 0 2 5 1 0
....................................................GAGGCTATAGCATTGAACTCA........................................................................... 21 0 15 0.53 8 8 0 0 0 0 0
..................................................TTTAGGCTATAGCATTGAACT............................................................................. 21 1 15 0.53 8 1 5 2 0 0 0
............................TTAGAACAGAAAATACTAACCGT................................................................................................. 23 0 4 0.50 2 0 1 0 0 1 0
...........................................................................TTACAATATTAGTCGTCAGTGT................................................... 22 0 14 0.50 7 2 1 1 3 0 0
.............TTTAGCAGGTATAACTTAGAAC................................................................................................................. 22 0 6 0.50 3 0 0 0 3 0 0
..................................................TTGAGGCTATAGCATTGAACTC............................................................................ 22 0 15 0.47 7 4 3 0 0 0 0
...................................................TGAGGCTAGAGCATTGAACTC............................................................................ 21 1 16 0.44 7 7 0 0 0 0 0
...............................................CCGTTGAGGCTATAGCATTGA................................................................................ 21 0 14 0.43 6 6 0 0 0 0 0
................................................CGTTGAGGCTATAGCATTGA................................................................................ 20 0 14 0.43 6 3 2 0 0 1 0
..................................................TTGAGGCTATAGCATTGAACA............................................................................. 21 1 15 0.40 6 0 6 0 0 0 0
.....................................AAAATACTAACCGTTGAGGC........................................................................................... 20 0 5 0.40 2 1 0 0 1 0 0
...................................AGAAAATACTAACCGTTGAGG............................................................................................ 21 0 5 0.40 2 0 1 1 0 0 0
..................................................TTGAGGATATAGCATTGAACT............................................................................. 21 1 15 0.40 6 0 5 0 0 1 0
....................................................GAGGCTATAGCATTGAACT............................................................................. 19 0 15 0.40 6 6 0 0 0 0 0
............................................................................TACAATATTAGTCGTCAGTGTT.................................................. 22 1 14 0.36 5 3 0 2 0 0 0
..............TTAGCAGGTATAACTTAGAACAG............................................................................................................... 23 0 6 0.33 2 1 0 0 1 0 0
.....................................................AGGCTATAGCATTGAACTC............................................................................ 19 0 15 0.33 5 4 0 0 1 0 0
..................................................TTGAGGCTATAGCATTGAA............................................................................... 19 0 15 0.33 5 0 2 1 0 2 0
............TTTTAGCAGGTATAACTTAG.................................................................................................................... 20 0 6 0.33 2 0 1 0 0 1 0
............TTTTAGCAGGTATAACTTAGA................................................................................................................... 21 0 6 0.33 2 0 0 0 0 2 0
..................................................TGGAGGCTATAGCATTGAACT............................................................................. 21 1 15 0.33 5 0 0 0 5 0 0
..............TTAGCAGGTATAACTTAGAAC................................................................................................................. 21 0 6 0.33 2 1 0 0 1 0 0
........................................................CTGTGGCATTGAACTCATGTT....................................................................... 21 2 7 0.29 2 1 0 1 0 0 0
..............................................................................CAATATTAGTCGTCAGTGTA.................................................. 20 0 14 0.29 4 4 0 0 0 0 0
..................................................TTGAGGCTATAGCATTGA................................................................................ 18 0 15 0.27 4 0 2 0 0 2 0
..................................................TTGAGGCTATAGCATTGAACC............................................................................. 21 1 15 0.27 4 0 1 0 3 0 0
..................................................TTGAGGCTATATCATTGAACT............................................................................. 21 1 15 0.27 4 0 3 1 0 0 0
.............................TAGAACAGAAAATACTAACCGT................................................................................................. 22 0 4 0.25 1 0 0 1 0 0 0
...............................GAACAGAAAATACTAACCGTT................................................................................................ 21 0 4 0.25 1 0 1 0 0 0 0
.............................TGGAACAGAAAATACTAACCGT................................................................................................. 22 1 4 0.25 1 0 0 1 0 0 0
............................TTAGAACAGAAAATACTAACCG.................................................................................................. 22 0 4 0.25 1 1 0 0 0 0 0
............................TGAGAACAGAAAATACTAACCG.................................................................................................. 22 1 4 0.25 1 0 0 0 1 0 0
...............................GAACAGAAAATACTAACCGTTG............................................................................................... 22 0 4 0.25 1 0 0 1 0 0 0
.............................TAGAACAGAAAATACTAACCG.................................................................................................. 21 0 4 0.25 1 0 0 0 1 0 0
..............................AGAAAAGAAAATACTAACCGT................................................................................................. 21 1 4 0.25 1 0 0 0 0 1 0
............................................................................TACAATATGAGTCGTCAGTGT................................................... 21 1 14 0.21 3 3 0 0 0 0 0
............................................................................TGCAATATTAGTCGTCAGTGT................................................... 21 1 14 0.21 3 0 0 0 3 0 0
.............................................................................ACAATATTAGTCGTCAGTG.................................................... 19 0 14 0.21 3 0 0 3 0 0 0
......................................AAATACTAACCGTTGAGGCTAT........................................................................................ 22 0 5 0.20 1 0 0 0 1 0 0
.....................................AAAATACTAACCGTTGAGGCA.......................................................................................... 21 1 5 0.20 1 0 0 0 1 0 0
...................................AGAAAATACTAACCGTTGAGGC........................................................................................... 22 0 5 0.20 1 0 0 0 1 0 0
..................................................TTGATGCTATAGCATTGAACT............................................................................. 21 1 15 0.20 3 0 2 1 0 0 0
...................................AGAAAATACTAACCGTTTAGG............................................................................................ 21 1 5 0.20 1 0 1 0 0 0 0
......................................AAATACTAACCGTTGAGGCT.......................................................................................... 20 0 5 0.20 1 0 0 0 1 0 0
.....................................................AGGCTATAGCATTGAACTCA........................................................................... 20 0 15 0.20 3 3 0 0 0 0 0
.........................................TACTAACCGTTGAGGCTATAGC..................................................................................... 22 0 5 0.20 1 0 0 0 1 0 0
..................................................TTGAGTCTATAGCATTGAACT............................................................................. 21 1 15 0.20 3 0 3 0 0 0 0
.....................................AAAATACTAACCGTTGAGTC........................................................................................... 20 1 5 0.20 1 0 1 0 0 0 0
........................................ATACTAACCGTTGAGGCTATAG...................................................................................... 22 0 5 0.20 1 0 1 0 0 0 0
.......................................AATACTAACCGTTGAGGCTAT........................................................................................ 21 0 5 0.20 1 1 0 0 0 0 0
..................................................CTGAGGCTATAGCATTGAACT............................................................................. 21 1 15 0.20 3 0 2 0 0 1 0
.....................................AAATTACTAACCGTTGAGGCT.......................................................................................... 21 1 5 0.20 1 0 0 0 1 0 0
.......................................AATACTAACCGTTGAGGCT.......................................................................................... 19 0 5 0.20 1 0 1 0 0 0 0
.................................ACAGAAAATACTAACCGTTGT.............................................................................................. 21 1 5 0.20 1 0 1 0 0 0 0
.............TGTAGCAGGTATAACTTAGAACA................................................................................................................ 23 1 6 0.17 1 0 0 0 1 0 0
................AGCAGGTATAACTTAGAACAGT.............................................................................................................. 22 1 6 0.17 1 0 1 0 0 0 0
............TTTTAGCAGGTATAACTTAGAAA................................................................................................................. 23 1 6 0.17 1 0 0 0 1 0 0
.............TTTAGCAGGTATAACTTAGA................................................................................................................... 20 0 6 0.17 1 1 0 0 0 0 0
..............TTAGCAGGTATAACTTAGT................................................................................................................... 19 1 6 0.17 1 0 1 0 0 0 0
........................................................................ATGTTACAGTATTAGTCGTCA....................................................... 21 1 12 0.17 2 0 1 1 0 0 0
...............TAGCAGGTATAACTTAGAAC................................................................................................................. 20 0 6 0.17 1 0 0 0 1 0 0
...................AGGTATAACTTAGAACAGA.............................................................................................................. 19 0 6 0.17 1 1 0 0 0 0 0
............TTTCAGCAGGTATAACTTAGAAC................................................................................................................. 23 1 6 0.17 1 0 0 0 1 0 0
............................................TAACCGTTGAGGCTATAGC..................................................................................... 19 0 6 0.17 1 0 1 0 0 0 0
..............TTAGCAGGTATAACTTAGA................................................................................................................... 19 0 6 0.17 1 0 1 0 0 0 0
...............TAGCAGGTATAACTTAGAACA................................................................................................................ 21 0 6 0.17 1 1 0 0 0 0 0
............TTTTAGCAGGAATAACTTAGAAC................................................................................................................. 23 1 6 0.17 1 0 0 0 1 0 0
............................................TAACCGTTGAGGCTATAGCATT.................................................................................. 22 0 6 0.17 1 1 0 0 0 0 0
.............................................................................ACAATATTAGACGTCAGTGTA.................................................. 21 1 14 0.14 2 0 0 2 0 0 0
............................................................................TACAATATTAGTCGTCAGT..................................................... 19 0 14 0.14 2 1 1 0 0 0 0
................................................CGTTGAGGCTATAGCATTGAAC.............................................................................. 22 0 14 0.14 2 1 0 0 1 0 0
................................................CGTTGAGGCTATAGCATTGAACT............................................................................. 23 0 14 0.14 2 0 0 0 1 0 1
.............................................................................AAAATATTAGTCGTCAGTGTA.................................................. 21 1 14 0.14 2 0 0 2 0 0 0
............................................................................TACAATATTAGTGGTCAGTGT................................................... 21 1 14 0.14 2 0 0 2 0 0 0
.............................................................................ACAATATTAGTCGTCAGTGTT.................................................. 21 1 14 0.14 2 1 0 1 0 0 0
..........................................................ATAGCATTAAACTCATGTTAC..................................................................... 21 1 7 0.14 1 1 0 0 0 0 0
.............................................................................ACAATATTAGTCGTCAGTA.................................................... 19 1 14 0.14 2 0 2 0 0 0 0
........................................................CTATAGCATTGAACTCATGTT....................................................................... 21 0 7 0.14 1 1 0 0 0 0 0
.........AGGTTTTATCAGTTATAACTT...................................................................................................................... 21 2 7 0.14 1 0 0 0 0 0 1
.............................................................................ACAATATTGGTCGTCAGTGTA.................................................. 21 1 14 0.14 2 2 0 0 0 0 0
..........................................................ATAGCATTGAACTCATGTTAC..................................................................... 21 0 7 0.14 1 1 0 0 0 0 0
...................................................TTAGGCTATAGCATTGAACT............................................................................. 20 1 15 0.13 2 0 2 0 0 0 0
..................................................TTGAGGCTCTAGCATTGAACT............................................................................. 21 1 15 0.13 2 2 0 0 0 0 0
..................................................TTGAGGCTATAGCATTTAACT............................................................................. 21 1 15 0.13 2 1 0 1 0 0 0
..................................................TTGAGGCTATAGCACTGAACT............................................................................. 21 1 15 0.13 2 0 0 2 0 0 0
..................................................TTGAAGCTATAGCATTGAACT............................................................................. 21 1 15 0.13 2 1 0 1 0 0 0
......................................................GGCTATAGCATTGAACTCA........................................................................... 19 0 15 0.13 2 0 2 0 0 0 0
..................................................TTGAGGCTATAGCATCGAACT............................................................................. 21 1 15 0.13 2 0 2 0 0 0 0
..................................................TAGAGGCTATAGCATTGAACT............................................................................. 21 1 15 0.13 2 0 0 1 1 0 0
.................................................GTTGAGGCTATAGCATTGAAC.............................................................................. 21 0 15 0.13 2 0 1 0 1 0 0
..................................................TTGACGCTATAGCATTGAACT............................................................................. 21 1 15 0.13 2 1 1 0 0 0 0
...................................................TGATGCTATAGCATTGAACTC............................................................................ 21 1 15 0.13 2 0 0 0 2 0 0
.................................................GTTGAGGCTATAGCATTGAAA.............................................................................. 21 1 15 0.13 2 0 2 0 0 0 0
..................................................TTGAGGCTATAGAATTGAACT............................................................................. 21 1 15 0.13 2 0 0 0 1 1 0
..................................................TTGAGGCTATCGCATTGAACT............................................................................. 21 1 15 0.13 2 0 0 0 1 1 0
.................................................................................................................TTTGATAGATCGTAAAAAGAT.............. 21 3 9 0.11 1 0 1 0 0 0 0
.......................................................................CATGTTACAGTATTAGTCGTC........................................................ 21 1 11 0.09 1 0 0 0 0 1 0
...........................................CGAACCGTTGAGGCTATAGC..................................................................................... 20 1 12 0.08 1 0 0 0 1 0 0
...................................AGAAGATACTAACCGTTAAGG............................................................................................ 21 2 13 0.08 1 0 0 0 0 1 0
..............................................ACCGTTGAGGCTATAGCATTG................................................................................. 21 0 13 0.08 1 1 0 0 0 0 0
.............................................AACCGTTGAGGCTATAGCATTG................................................................................. 22 0 13 0.08 1 1 0 0 0 0 0
.............................................AACCGTTGGGGCTATAGCATTG................................................................................. 22 1 13 0.08 1 1 0 0 0 0 0
...................................AGAAAATACAAACCGTTTAGG............................................................................................ 21 2 13 0.08 1 0 0 0 0 1 0
.............................................AACCGTTGAGGCTATAGCATT.................................................................................. 21 0 13 0.08 1 1 0 0 0 0 0
.............................................................................ACAATATTATTCGTCAGTGTA.................................................. 21 1 14 0.07 1 0 1 0 0 0 0
...............................................CCGTTGAAGCTGTAGCATTGA................................................................................ 21 2 14 0.07 1 0 0 1 0 0 0
.............................................................................ACAATATTTGTCGTCAGTGT................................................... 20 1 14 0.07 1 1 0 0 0 0 0
............................................................................TACAATATTAGTCGTCAGTGTC.................................................. 22 1 14 0.07 1 0 1 0 0 0 0
...............................................CCGTTGAGGCTATAGCATTTA................................................................................ 21 1 14 0.07 1 1 0 0 0 0 0
............................................................................AGCAATATTAGTCGTCAGTGT................................................... 21 2 14 0.07 1 0 0 1 0 0 0
............................................................................TACAATATTAGCCGTCAGTGT................................................... 21 1 14 0.07 1 0 0 1 0 0 0
.............................................................................ACAATATTAGTCGTCAGTGTG.................................................. 21 1 14 0.07 1 0 0 1 0 0 0
...............................................CCGTTGAGGCTATAGCAT................................................................................... 18 0 14 0.07 1 0 0 0 1 0 0
............................................................................TACAATATTATTCGTCAGTG.................................................... 20 1 14 0.07 1 0 0 1 0 0 0
...............................................CCGTTGAGGCTATAGCCTTTA................................................................................ 21 2 14 0.07 1 0 0 0 0 1 0
.............................................................................ACAATATTAGCCGTCAGTGTA.................................................. 21 1 14 0.07 1 0 0 0 0 1 0
............................................................................TACAATATTAGTCCTCAGTGT................................................... 21 1 14 0.07 1 0 0 1 0 0 0
.............................................................................ACAATATTAGTCGTCAGTGCA.................................................. 21 1 14 0.07 1 0 0 1 0 0 0
.............................................................................ACAATATTAGTCGTCAGTATA.................................................. 21 1 14 0.07 1 0 0 1 0 0 0
.............................................................................ACAATATTAGTCGTCAGTGTC.................................................. 21 1 14 0.07 1 0 0 0 0 1 0
.............................................................................ACCATATTAGTCGTCAGTGT................................................... 20 1 14 0.07 1 0 0 1 0 0 0
............................................................................TACAATATAAGTCGTCAGTGT................................................... 21 1 14 0.07 1 1 0 0 0 0 0
................................................CGTTGAGGCTATAGCATTG................................................................................. 19 0 14 0.07 1 1 0 0 0 0 0
............................................................................TACAATATTAGTCGTCGGTGT................................................... 21 1 14 0.07 1 0 1 0 0 0 0
............................................................................TACAATATTCGTCGTCAGTGT................................................... 21 1 14 0.07 1 0 0 1 0 0 0
............................................................................CACAATATTAGTCGTCAGTGT................................................... 21 1 14 0.07 1 0 0 0 1 0 0
............................................................................TACGATATTAGTCGTCAGTGT................................................... 21 1 14 0.07 1 0 0 0 0 0 1
............................................................................TACAATATTAGTCGTCAGAGT................................................... 21 1 14 0.07 1 0 0 1 0 0 0
.............................................................................ACAATATCAGTCGTCAGTGTA.................................................. 21 1 14 0.07 1 0 1 0 0 0 0
............................................................................TACAATATTAGTCATCAGTGT................................................... 21 1 14 0.07 1 0 0 1 0 0 0
...........................................................................TTACAATATTAGTCGGCAGTG.................................................... 21 1 14 0.07 1 0 0 0 0 1 0
............................................................................TACAATATTAGCCGTCAGTG.................................................... 20 1 14 0.07 1 0 0 1 0 0 0
...........................................................................TTACAATATTAGTCGTCAGTGC................................................... 22 1 14 0.07 1 0 0 0 1 0 0
.............................................................................ACAATATTAGTCGACAGTGTA.................................................. 21 1 14 0.07 1 0 0 0 0 1 0
.............................................................................ACAATATTAGACGTCAATGTAC................................................. 22 2 14 0.07 1 0 0 0 0 1 0
...........................................................................TGACAATATTAGTCGTCACTG.................................................... 21 2 14 0.07 1 0 0 0 0 1 0
.............................................................................ACAATATTAGTCGTCAGTGTAA................................................. 22 1 14 0.07 1 1 0 0 0 0 0
..............................................................................CAATATTAGTCGTCAGTG.................................................... 18 0 14 0.07 1 1 0 0 0 0 0
.............................................................................AGAATATTAGTCGTCAGTTTA.................................................. 21 2 14 0.07 1 0 0 0 0 1 0
................................................CGTTGAGGTTATAGCATTGA................................................................................ 20 1 14 0.07 1 1 0 0 0 0 0
............................................................................TACAATATTAGTCGTCAGTTT................................................... 21 1 14 0.07 1 0 0 0 0 0 1
............................................................................TACAATATTAGTCGTAAGTGT................................................... 21 1 14 0.07 1 0 0 1 0 0 0
............................................................................TACAATACTAGTCGTCAGTGT................................................... 21 1 14 0.07 1 0 0 1 0 0 0
............................................................................TACAATATTGGTCGTCAGTGT................................................... 21 1 14 0.07 1 0 0 1 0 0 0
..................................................TTGAGGCTATAGCATTGTACT............................................................................. 21 1 15 0.07 1 1 0 0 0 0 0
..................................................TTGAGGCTATAGCATTGAACG............................................................................. 21 1 15 0.07 1 0 0 1 0 0 0
...................................................TCAGGCTATAGCATTGAACTC............................................................................ 21 1 15 0.07 1 1 0 0 0 0 0
..................................................TTGAGGCTATAGCATTGT................................................................................ 18 1 15 0.07 1 0 0 0 0 1 0
..................................................TTGAGGCTATAGCATTGAG............................................................................... 19 1 15 0.07 1 0 0 0 0 1 0
..................................................TTGAGGCCATAGCATTGTACT............................................................................. 21 2 15 0.07 1 0 0 0 0 1 0
..................................................TTGAGGCTATCGCATTGAACC............................................................................. 21 2 15 0.07 1 0 0 0 1 0 0
.....................................................AGCCTATAGCATTGAACTCA........................................................................... 20 1 15 0.07 1 0 1 0 0 0 0
..................................................TTTAGGCTATAGCATTGAACTC............................................................................ 22 1 15 0.07 1 0 1 0 0 0 0
.................................................GTTGAGGCTATAGCATTG................................................................................. 18 0 15 0.07 1 0 1 0 0 0 0
.....................................................AGGCTATAGCATTTAACTCA........................................................................... 20 1 15 0.07 1 0 0 0 0 1 0
......................................................GGCTATAGCATTGAACTCAT.......................................................................... 20 0 15 0.07 1 1 0 0 0 0 0
...................................................TGAGGCTACAGCATTGAACTCA........................................................................... 22 1 15 0.07 1 1 0 0 0 0 0
..................................................TCGAGGCTATAGCATTGAACT............................................................................. 21 1 15 0.07 1 0 1 0 0 0 0
..................................................TTGAGGCTATAGCATTGAAAT............................................................................. 21 1 15 0.07 1 0 1 0 0 0 0
...................................................TGAGGCTATAGCATTGAAC.............................................................................. 19 0 15 0.07 1 1 0 0 0 0 0
...................................................TGAGGCTATAGCATTGAACTCG........................................................................... 22 1 15 0.07 1 1 0 0 0 0 0
..................................................TTTAGTCTATAGCATTGAACT............................................................................. 21 2 15 0.07 1 0 1 0 0 0 0
...................................................TGAGGCTATAGTATTGAACTC............................................................................ 21 1 15 0.07 1 1 0 0 0 0 0
..................................................TTGAGGCTATAACATTTAACT............................................................................. 21 2 15 0.07 1 0 0 0 0 0 1
..................................................TTGAGGCTATAGCATTGGAC.............................................................................. 20 1 15 0.07 1 0 0 0 0 1 0
.................................................GTTGAGGCTATAGCCTTGAACC............................................................................. 22 2 15 0.07 1 0 0 0 0 0 1
..................................................TTGAGGCTACAGCATTGAACT............................................................................. 21 1 15 0.07 1 0 0 1 0 0 0
..................................................TGGAGGCTATAGCATTGAAC.............................................................................. 20 1 15 0.07 1 0 0 0 1 0 0
.................................................GTTGAGGCTATAGCATTTAACT............................................................................. 22 1 15 0.07 1 0 0 0 0 0 1
.....................................................AGGCTATAACATTGAACTCAT.......................................................................... 21 1 15 0.07 1 1 0 0 0 0 0
..................................................TTGAGGCTATAGCGTTGGACT............................................................................. 21 2 15 0.07 1 0 1 0 0 0 0
.....................................................AGGCTATACCATTGAACTCAT.......................................................................... 21 1 15 0.07 1 1 0 0 0 0 0
..................................................TTGAGGCTATACCATTGA................................................................................ 18 1 15 0.07 1 0 0 0 0 1 0
...................................................TGAGGCTATAGCATTGAACTA............................................................................ 21 1 15 0.07 1 0 1 0 0 0 0
..................................................TTGTGGCTATAGCATTGAACC............................................................................. 21 2 15 0.07 1 0 0 0 1 0 0
..................................................TTGAGGCTATAGCATTGAACTT............................................................................ 22 1 15 0.07 1 0 1 0 0 0 0
..................................................TTGAGGCTATCGCGTTGGACT............................................................................. 21 3 15 0.07 1 0 0 0 0 1 0
..................................................TTGAGGCTATAGCGTTGAACT............................................................................. 21 1 15 0.07 1 0 0 1 0 0 0
...................................................GGAGGCTATAGCATTGAACTC............................................................................ 21 1 15 0.07 1 1 0 0 0 0 0
.................................................GTTGAGGCTATAGCATTGA................................................................................ 19 0 15 0.07 1 0 0 0 0 1 0
..................................................TTTAGGCTATAGCATTGACCT............................................................................. 21 2 15 0.07 1 0 1 0 0 0 0
..................................................TTGGGGCTATAGCATTGAACT............................................................................. 21 1 15 0.07 1 1 0 0 0 0 0
..................................................TTGAGGCTATGGCAGTGAACT............................................................................. 21 2 15 0.07 1 0 0 1 0 0 0
..................................................TTCAGGCTATAGCATTGAACT............................................................................. 21 1 15 0.07 1 0 0 0 1 0 0
..................................................TTGAGGCCATAGCATTGAACT............................................................................. 21 1 15 0.07 1 0 1 0 0 0 0
..................................................TTGAGGCTATCGCATTGCACT............................................................................. 21 2 15 0.07 1 0 0 0 0 1 0
...................................................TGACGCTATAGCATTGAAATC............................................................................ 21 2 15 0.07 1 0 0 0 0 1 0
..................................................TTGAGGCTATAACATTGAACT............................................................................. 21 1 15 0.07 1 0 0 1 0 0 0
...................................................TGAGGCTATAGCATTGAACTCA........................................................................... 22 0 15 0.07 1 0 1 0 0 0 0
..................................................TTGAGGCTATAGCATTGAACTA............................................................................ 22 1 15 0.07 1 0 1 0 0 0 0
.............................................................................ACATTATTAGTCGTCAGTGTA.................................................. 21 1 15 0.07 1 0 0 0 1 0 0
..................................................TTGAGGCTTTAGCATTGAACT............................................................................. 21 1 16 0.06 1 1 0 0 0 0 0
..............................AGAACAGAACATACAACCCGT................................................................................................. 21 3 17 0.06 1 0 0 0 0 1 0
..........................................................ATAGGATAGACCTCATGTT....................................................................... 19 3 20 0.05 1 0 0 0 0 1 0
................................................CGTACAGGCTATAGCATCG................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0
.................................................GTTGGGGGTATAGCACTGA................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0
..........................................................................................................GAAATTAATTGGTTGATC........................ 18 2 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

GGATCAGATTCCAAAATCGTCCATATTGAATCTTGTCTTTTATGATTGGCAACTCCGATATCGTAACTTGAGTACAATGTTATAATCAGCAGTCACATGGATAAATCTTTAATAAACTAACTAGTATTCTTCTAAAACACTTAATAAA
************************************.............(((((((((((....(((((((....))).))))..))))).))))))................*********************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V106
head
 V105
male body		 V055
head
 V039
embryo
.....................................................TCCGATATCGTAACTTGAGTAC......................................................................... 22 0 7 20.14 141 34 78 21 5 3 0
..............................................TGGCAACTCCGATATCGTAAC................................................................................. 21 0 13 20.00 260 226 20 8 4 1 1
.....................................................TCCGATATCGTAACTTGAGTA.......................................................................... 21 0 15 19.93 299 109 118 33 26 13 0
......................................................CCGATATCGTAACTTGAGTAC......................................................................... 21 0 7 15.43 108 27 58 5 10 8 0
...............................................GGCAACTCCGATATCGTAACT................................................................................ 21 0 14 13.14 184 177 3 3 0 0 1
................................................GCAACTCCGATATCGTAACTT............................................................................... 21 0 14 11.14 156 137 3 9 5 2 0
..........CCAAAATCGTCCATATTGAATC.................................................................................................................... 22 0 6 11.00 66 40 24 1 1 0 0
..................................GTCTTTTATGATTGGCAACTC............................................................................................. 21 0 5 8.00 40 29 3 2 4 2 0
.................................TGTCTTTTATGATTGGCAACT.............................................................................................. 21 0 5 6.60 33 1 23 4 5 0 0
.........TCCAAAATCGTCCATATTGAAT..................................................................................................................... 22 0 7 5.57 39 15 23 1 0 0 0
...................................TCTTTTATGATTGGCAACTCC............................................................................................ 21 0 5 5.00 25 7 1 11 5 1 0
.............................................TTGGCAACTCCGATATCGTAA.................................................................................. 21 0 13 4.46 58 29 9 17 0 0 3
.....................................................CCCGATATCGTAACTTGAGTAC......................................................................... 22 1 7 4.43 31 1 30 0 0 0 0
..................................GTCTTTTATGATTGGCAACTCC............................................................................................ 22 0 5 4.40 22 12 1 2 3 4 0
...........CAAAATCGTCCATATTGAATCT................................................................................................................... 22 0 6 4.17 25 6 18 1 0 0 0
...............................................GGCAACTCCGATATCGTAAC................................................................................. 20 0 14 3.71 52 50 0 2 0 0 0
......................................................CCGATATCGTAACTTGAGTACA........................................................................ 22 0 7 3.43 24 6 13 1 2 2 0
................................TTGTCTTTTATGATTGGCAAC............................................................................................... 21 0 5 2.80 14 4 5 3 1 1 0
......................................................CCGATATCGTAACTTGAGTA.......................................................................... 20 0 15 2.80 42 7 33 0 0 1 1
.........TCCAAAATCGTCCATATTGAATC.................................................................................................................... 23 0 6 2.67 16 4 11 1 0 0 0
...................TCCATATTGAATCTTGTCTTTT........................................................................................................... 22 0 6 2.67 16 6 8 1 0 1 0
...........CAAAATCGTCCATATTGAATC.................................................................................................................... 21 0 6 2.67 16 3 12 0 0 0 1
.......................................................CGATATCGTAACTTGAGTACA........................................................................ 21 0 7 2.57 18 6 3 3 4 2 0
.........................TTGAATCTTGTCTTTTATGAT...................................................................................................... 21 0 5 2.40 12 10 0 0 2 0 0
..................................................AACTCCGATATCGTAACTTGA............................................................................. 21 0 15 2.27 34 34 0 0 0 0 0
........................ATTGAATCTTGTCTTTTATGA....................................................................................................... 21 0 6 2.00 12 5 2 5 0 0 0
....................................................CTCCGATATCGTAACTTGAGT........................................................................... 21 0 15 1.87 28 19 0 6 0 3 0
.....................................................CCCGATATCGTAACTTGAGTA.......................................................................... 21 1 15 1.87 28 0 27 0 1 0 0
..........CCAAAATCGTCCATATTGAAT..................................................................................................................... 21 0 7 1.86 13 6 7 0 0 0 0
........................................................GATATCGTAACTTGAGTACAA....................................................................... 21 0 7 1.43 10 5 0 1 2 2 0
.............AAATCGTCCATATTGAATCT................................................................................................................... 20 0 6 1.33 8 5 1 2 0 0 0
.......................................................CGATATCGTAACTTGAGTAC......................................................................... 20 0 7 1.14 8 2 2 0 1 2 1
.................................................CAACTCCGATATCGTAACTTG.............................................................................. 21 0 15 1.13 17 16 0 0 0 1 0
...............................................GGCAACTCCGATATCGTAA.................................................................................. 19 0 14 1.00 14 14 0 0 0 0 0
..................................GTCTTTTATGATTGGCAACT.............................................................................................. 20 0 5 1.00 5 1 0 2 1 0 1
......................................................CCGATATCGTAACTTGAGTACAAAGGT................................................................... 27 2 1 1.00 1 1 0 0 0 0 0
..............................................TGGCAACTCCGATATCGTAA.................................................................................. 20 0 13 1.00 13 12 1 0 0 0 0
.........TCCAAAATCGTCCATATTGAA...................................................................................................................... 21 0 7 0.86 6 5 1 0 0 0 0
.............AAATCGTCCATATTGAATCTTG................................................................................................................. 22 0 6 0.83 5 1 0 4 0 0 0
............AAAATCGTCCATATTGAATC.................................................................................................................... 20 0 6 0.83 5 0 0 4 1 0 0
....................CCATATTGAATCTTGTCTTTT........................................................................................................... 21 0 6 0.83 5 2 1 1 0 1 0
............AAAATCGTCCATATTGAATCT................................................................................................................... 21 0 6 0.83 5 1 0 4 0 0 0
..............AATCGTCCATATTGAATCTTGT................................................................................................................ 22 0 6 0.83 5 4 0 1 0 0 0
.............................ATCTTGTCTTTTATGATTGGC.................................................................................................. 21 0 4 0.75 3 3 0 0 0 0 0
...........CAAAATCGTCCATATTGAAT..................................................................................................................... 20 0 7 0.71 5 0 5 0 0 0 0
..............................................TGGCAACTCCGAGATCGTAAC................................................................................. 21 1 13 0.69 9 9 0 0 0 0 0
...........CAAAATCGTCCATATTGAATCTT.................................................................................................................. 23 0 6 0.67 4 0 4 0 0 0 0
...............ATCGTCCATATTGAATCTTGT................................................................................................................ 21 0 6 0.67 4 3 0 1 0 0 0
...........CAAAATCGTCCATATTGAAGC.................................................................................................................... 21 1 6 0.67 4 0 4 0 0 0 0
.............AAATCGTCCATATTGAATC.................................................................................................................... 19 0 6 0.67 4 2 0 2 0 0 0
..........CCAAAATCGTCCATATTGAAGC.................................................................................................................... 22 1 6 0.67 4 0 4 0 0 0 0
.....................................................TCCGATATCGTAACTTGAGGA.......................................................................... 21 1 15 0.67 10 0 10 0 0 0 0
................................................GCAACTCCGATATCGTAACT................................................................................ 20 0 14 0.64 9 7 0 2 0 0 0
....................................CTTTTATGATTGGCAACTCC............................................................................................ 20 0 5 0.60 3 1 0 0 1 0 1
...........................................GATTGGCAACTCCGATATCGT.................................................................................... 21 0 5 0.60 3 1 0 2 0 0 0
.....................................................TCCGATATCGTAACTTGAGTGC......................................................................... 22 1 7 0.57 4 0 4 0 0 0 0
...............................................GGCAACTCCGATATCGTAACTT............................................................................... 22 0 14 0.57 8 6 1 1 0 0 0
.....................................................TCCGATATCGTAACTTGAGCAC......................................................................... 22 1 7 0.57 4 0 4 0 0 0 0
..............................................TGGCAACTCCGATATCGTAACT................................................................................ 22 0 13 0.54 7 5 1 0 1 0 0
.....................................................TCCGATATCGTAACTTGAGT........................................................................... 20 0 15 0.53 8 7 0 1 0 0 0
............................................ATTGGCAACTCCGATATCGTA................................................................................... 21 0 6 0.50 3 1 1 1 0 0 0
...............................................GGCAACTCCGATGTCGTAACT................................................................................ 21 1 14 0.50 7 7 0 0 0 0 0
..........................TGAATCTTGTCTTTTATGATT..................................................................................................... 21 0 4 0.50 2 0 0 1 1 0 0
.......................................................CGATATCGTAACTTGAGTA.......................................................................... 19 0 15 0.47 7 0 1 1 0 5 0
.........................................................ATATCGTAACTTGAGTACAAT...................................................................... 21 0 7 0.43 3 0 0 2 0 1 0
...........................................................ATCGTAACTTGAGTACAATGT.................................................................... 21 0 7 0.43 3 3 0 0 0 0 0
................................................GCAACTCCGATATCGTAAC................................................................................. 19 0 14 0.43 6 3 0 3 0 0 0
......................................................CCGATATCGTAACTTGAGTGC......................................................................... 21 1 7 0.43 3 0 2 0 0 1 0
..................................GTCTTTTATGATTGGCAACGC............................................................................................. 21 1 5 0.40 2 0 0 0 1 1 0
................................TTGTCTTTTATGATTGGCAA................................................................................................ 20 0 5 0.40 2 2 0 0 0 0 0
..................................................AACTCCGATATCGTAACTTG.............................................................................. 20 0 15 0.40 6 6 0 0 0 0 0
.....................................................TCCGATATCGTAACTTGACTA.......................................................................... 21 1 15 0.40 6 0 6 0 0 0 0
..........................................TGATTGGCAACTCCGATATCGT.................................................................................... 22 0 5 0.40 2 1 0 1 0 0 0
.................................CGTCTTTTATGATTGGCAACT.............................................................................................. 21 1 5 0.40 2 0 2 0 0 0 0
...................................................ACTCCGATATCGTAACTTGA............................................................................. 20 0 15 0.33 5 5 0 0 0 0 0
...................CCCATATTGAATCTTGTCTTTT........................................................................................................... 22 1 6 0.33 2 0 2 0 0 0 0
................TCGTCCATATTGAATCTTGTCT.............................................................................................................. 22 0 6 0.33 2 1 0 1 0 0 0
................TCGTCCATATTGAATCTTGTC............................................................................................................... 21 0 6 0.33 2 2 0 0 0 0 0
...................TCCATATTGAATCTTGTCTTGT........................................................................................................... 22 1 6 0.33 2 0 2 0 0 0 0
............AAAATCGTCCATATTGAATCTTG................................................................................................................. 23 0 6 0.33 2 0 1 1 0 0 0
.....................................................TCCGATATCGTAGCTTGAGTA.......................................................................... 21 1 15 0.33 5 4 0 1 0 0 0
..................................GTCTTTTATGATGGGCAACTC............................................................................................. 21 1 6 0.33 2 2 0 0 0 0 0
.........CCCAAAATCGTCCATATTGAAT..................................................................................................................... 22 1 7 0.29 2 0 2 0 0 0 0
......................................................CCGATATCGTAACTTGAGTACG........................................................................ 22 1 7 0.29 2 1 1 0 0 0 0
.....................................................ACCGATATCGTAACTTGAGTAC......................................................................... 22 1 7 0.29 2 0 0 1 1 0 0
......................................................CCGATATCGTGGCTTGGGTAC......................................................................... 21 3 7 0.29 2 0 0 2 0 0 0
.........TCCAAAATCGTCCGTATTGAAT..................................................................................................................... 22 1 7 0.29 2 2 0 0 0 0 0
.....................................................CCCGATATCGTAACTTGAGGA.......................................................................... 21 2 15 0.27 4 0 4 0 0 0 0
......................................................CCGATATCGTAACTTGAGGA.......................................................................... 20 1 15 0.27 4 0 4 0 0 0 0
.....................................................TCCGATATCGTAACTTGTGTA.......................................................................... 21 1 15 0.27 4 0 4 0 0 0 0
...............................ATTGTCTTTTACGATTGGCAACT.............................................................................................. 23 2 4 0.25 1 0 1 0 0 0 0
...............................ATTGTCTTTTATGATTGGCAACT.............................................................................................. 23 1 4 0.25 1 0 1 0 0 0 0
..........................TGAATCTTGTCTTTTATGATTG.................................................................................................... 22 0 4 0.25 1 0 0 0 1 0 0
..............................................TGGCAACTCCGACATCGTAAC................................................................................. 21 1 13 0.23 3 3 0 0 0 0 0
..............................................TGGCAACTCCGAAATCGTAAC................................................................................. 21 1 14 0.21 3 3 0 0 0 0 0
...............................................TGCAACTCCGATATCGTAACTT............................................................................... 22 1 14 0.21 3 2 0 0 1 0 0
................................................GCAACTCCGATAGCGTAACTT............................................................................... 21 1 14 0.21 3 3 0 0 0 0 0
...................................TCTTTTATGATTGGCAACTA............................................................................................. 20 1 5 0.20 1 0 0 0 1 0 0
..................................GTCTTTTATGATTGGCAACTG............................................................................................. 21 1 5 0.20 1 0 0 0 0 1 0
.................................TGTCTTTTATGATTGGCTACT.............................................................................................. 21 1 5 0.20 1 0 1 0 0 0 0
................................GTGTCTTTTATGATTGGCAGC............................................................................................... 21 2 5 0.20 1 0 1 0 0 0 0
..................................GTCTTTTCTGATTGGCAACTC............................................................................................. 21 1 5 0.20 1 0 0 0 0 1 0
..................................TTCTTTTATGCTTGGCAACTCC............................................................................................ 22 2 5 0.20 1 0 0 0 1 0 0
....................................CTTTTATGATTGGCAACTCCG........................................................................................... 21 0 5 0.20 1 0 0 1 0 0 0
.................................TGTCTTTTATGATTGGCAACTCC............................................................................................ 23 0 5 0.20 1 0 0 0 0 0 1
....................................................TTCCGATATCGTAACTTGAGTA.......................................................................... 22 1 15 0.20 3 3 0 0 0 0 0
..................................TTCTTTTATGATTGGCAACTC............................................................................................. 21 1 5 0.20 1 0 0 0 0 1 0
................................TTGTCGTTTATGATTGGCAAC............................................................................................... 21 1 5 0.20 1 0 1 0 0 0 0
..................................GTCTCTTATGATTGGCAACTC............................................................................................. 21 1 5 0.20 1 0 0 1 0 0 0
..................................GTTTTTTATGATTGGCGGCTC............................................................................................. 21 3 5 0.20 1 0 0 0 0 1 0
.........................TTGAATCTTGTCTTTTATGGT...................................................................................................... 21 1 5 0.20 1 1 0 0 0 0 0
...................................TCTTTTATGATTGGCAACTC............................................................................................. 20 0 5 0.20 1 1 0 0 0 0 0
.................................TGTCTTTTATGATTGGCAAGT.............................................................................................. 21 1 5 0.20 1 0 1 0 0 0 0
.................................TGTCTTTTATGATTGGCAACTC............................................................................................. 22 0 5 0.20 1 1 0 0 0 0 0
..................................GTCTTTTATGATTGGCAACGCC............................................................................................ 22 1 5 0.20 1 0 0 0 0 0 1
..................................GTCTTTTAGGATTGGCAACTC............................................................................................. 21 1 5 0.20 1 0 0 0 1 0 0
...................................CCTTTTATGATTGGCAACT.............................................................................................. 19 1 5 0.20 1 0 1 0 0 0 0
...................................TCTTTTATGATTGGCAAGT.............................................................................................. 19 1 5 0.20 1 0 1 0 0 0 0
...................................CCTTTTATGATTGGCAACTCC............................................................................................ 21 1 5 0.20 1 0 0 1 0 0 0
.........................................ATGATTGGCAACTCCGATATCGT.................................................................................... 23 0 5 0.20 1 0 0 1 0 0 0
..........................................TGATTGGCAACTCAGATATCGT.................................................................................... 22 1 5 0.20 1 1 0 0 0 0 0
..................................GTCTTTTATGGTTGGCAACTC............................................................................................. 21 1 5 0.20 1 1 0 0 0 0 0
.................................TGTCTTTTATGCTTGGCAAC............................................................................................... 20 1 5 0.20 1 1 0 0 0 0 0
...........................................GATTGGCAACTCCGATATCGTA................................................................................... 22 0 5 0.20 1 0 0 1 0 0 0
................................TTGTCTTTTATGATTGGCAACT.............................................................................................. 22 0 5 0.20 1 1 0 0 0 0 0
..................................GTCTTTTATGATTGGCAAC............................................................................................... 19 0 5 0.20 1 0 1 0 0 0 0
...................................TCTTTTATGGTTGGCGACTCC............................................................................................ 21 2 5 0.20 1 1 0 0 0 0 0
.................................CGTCTTTTATGATTGGCAACTC............................................................................................. 22 1 5 0.20 1 0 1 0 0 0 0
...................................TCTTTTATGATTGGCAAC............................................................................................... 18 0 5 0.20 1 0 0 1 0 0 0
...................................TCTTTTATGATTGGCAACTCA............................................................................................ 21 1 5 0.20 1 0 0 0 0 1 0
....................................................CTCCGATATCGTAACTTGAG............................................................................ 20 0 15 0.20 3 3 0 0 0 0 0
.........CCCAAAATCGTCCATATTGAATC.................................................................................................................... 23 1 6 0.17 1 0 1 0 0 0 0
..................................TTCTTTTATGATGGGCAACTCC............................................................................................ 22 2 6 0.17 1 0 0 0 0 1 0
...................ACCATATTGAATCTTGTCTTTT........................................................................................................... 22 1 6 0.17 1 0 1 0 0 0 0
...........CAAAATCGTCCATATTTAATC.................................................................................................................... 21 1 6 0.17 1 0 1 0 0 0 0
........................ATTGAATCTTGTCTTCTATGA....................................................................................................... 21 1 6 0.17 1 0 0 1 0 0 0
..................................GTCTTTTATGATTGGGAAGGC............................................................................................. 21 3 6 0.17 1 0 0 0 0 1 0
.............AAATCGTCCATGTTGAATCT................................................................................................................... 20 1 6 0.17 1 1 0 0 0 0 0
..........TCAAAATCGTCCATATTGAATCT................................................................................................................... 23 1 6 0.17 1 1 0 0 0 0 0
...................TCCATATTGAATCTTGTCTTTTA.......................................................................................................... 23 0 6 0.17 1 1 0 0 0 0 0
.........ACCGAAATCGTCCATATTGAATC.................................................................................................................... 23 2 6 0.17 1 0 0 0 0 0 1
........................ATTGAATCTTGTCTTTTATG........................................................................................................ 20 0 6 0.17 1 1 0 0 0 0 0
...........CAAAATCGTCCATATTGGATCTT.................................................................................................................. 23 1 6 0.17 1 0 1 0 0 0 0
...............ATCGTCCATATTGAATCTTGG................................................................................................................ 21 1 6 0.17 1 1 0 0 0 0 0
...............ATCGTACATATTGAATCTTGT................................................................................................................ 21 1 6 0.17 1 0 0 1 0 0 0
.........ACCAAAATCGTCCATATTGAATC.................................................................................................................... 23 1 6 0.17 1 0 1 0 0 0 0
..............AATCGTCCATATTGAATCTTG................................................................................................................. 21 0 6 0.17 1 1 0 0 0 0 0
........................ATTGAATCTTGTCTTTTAGGA....................................................................................................... 21 1 6 0.17 1 0 0 1 0 0 0
........TTCCAAAATCGTCCATATTGAATC.................................................................................................................... 24 0 6 0.17 1 0 1 0 0 0 0
..............AATCGTCCATATTGAATCT................................................................................................................... 19 0 6 0.17 1 0 0 1 0 0 0
.........TCCAAAATCGTCCATATTGTAGC.................................................................................................................... 23 2 6 0.17 1 0 1 0 0 0 0
...........CAAAATCGTCCATGTTGAATCT................................................................................................................... 22 1 6 0.17 1 1 0 0 0 0 0
..........ACAAAATCGTCCATATTGAATC.................................................................................................................... 22 1 6 0.17 1 1 0 0 0 0 0
.................CGTCCATATTGAATCTTCTC............................................................................................................... 20 1 6 0.17 1 0 1 0 0 0 0
...................TCCATATTGAATCTTGTCTCTT........................................................................................................... 22 1 6 0.17 1 0 1 0 0 0 0
...........CAAAATCCTCCATATTGAATCT................................................................................................................... 22 1 6 0.17 1 0 1 0 0 0 0
................CCGTCCATATTGAGTCTTGTCT.............................................................................................................. 22 2 6 0.17 1 1 0 0 0 0 0
.............AAATCGTCCATATTGAATCTTGT................................................................................................................ 23 0 6 0.17 1 1 0 0 0 0 0
...........CAAAATCGTCCAGATTGAATC.................................................................................................................... 21 1 6 0.17 1 1 0 0 0 0 0
....................CCATATTGAATCTTGTCTTGT........................................................................................................... 21 1 6 0.17 1 0 1 0 0 0 0
......................ATATTGAATCTTGTCTTTTATG........................................................................................................ 22 0 6 0.17 1 1 0 0 0 0 0
..........CCAAAATCGTTCATATTGAATC.................................................................................................................... 22 1 6 0.17 1 0 1 0 0 0 0
.................CGTCCATATTGAATCTTGTCT.............................................................................................................. 21 0 6 0.17 1 1 0 0 0 0 0
..............AATCGTCCATATTGAATCTT.................................................................................................................. 20 0 6 0.17 1 1 0 0 0 0 0
...................TCCATATTGAATCTTGTCTTTTC.......................................................................................................... 23 1 6 0.17 1 0 1 0 0 0 0
..................GTCCATATTGAATCTTGTCTTTT........................................................................................................... 23 0 6 0.17 1 1 0 0 0 0 0
........................................TATGGTTGGCAACTCCGATAT....................................................................................... 21 1 12 0.17 2 0 0 1 1 0 0
.........CCCAAAATCGTCCATATTGAAGC.................................................................................................................... 23 2 6 0.17 1 0 1 0 0 0 0
..................GTCCATATTGAATCTTGTCTTT............................................................................................................ 22 0 6 0.17 1 1 0 0 0 0 0
..........CCAAAATCGTCCATATTGAATCT................................................................................................................... 23 0 6 0.17 1 1 0 0 0 0 0
...................TCCATATTGAATCTTGTCTTT............................................................................................................ 21 0 6 0.17 1 1 0 0 0 0 0
.........................TTGAATCTTGTCTTTTATGA....................................................................................................... 20 0 6 0.17 1 1 0 0 0 0 0
..............................................TGGCAACTCCGATATCGTAGC................................................................................. 21 1 13 0.15 2 0 2 0 0 0 0
..............................................TGGCAACTCCGGTGTCGTAAC................................................................................. 21 2 13 0.15 2 2 0 0 0 0 0
..............................................TGGCAACTCCGATATCGTAACTT............................................................................... 23 0 13 0.15 2 1 1 0 0 0 0
.............................................TTGGCAACTCCGATATCGTA................................................................................... 20 0 13 0.15 2 2 0 0 0 0 0
........................................................GATATCGCAAATTGAGTACAA....................................................................... 21 2 7 0.14 1 0 0 0 0 1 0
.........TCCAAAATCGTCCATATTG........................................................................................................................ 19 0 7 0.14 1 1 0 0 0 0 0
.....................................................TCCGATATTGTAACTTGAGTAC......................................................................... 22 1 7 0.14 1 0 0 1 0 0 0
.....................................................TCCGATATCGTAACTGGAGTAC......................................................................... 22 1 7 0.14 1 0 1 0 0 0 0
............AAAATCGTCCATATTGAAT..................................................................................................................... 19 0 7 0.14 1 0 0 0 0 0 1
...............................................GGCAACTCCGAGATCGTAAC................................................................................. 20 1 14 0.14 2 2 0 0 0 0 0
......................................................CCGATATCGTAACTTGAGCAC......................................................................... 21 1 7 0.14 1 0 1 0 0 0 0
......................................................CCGATATCGTAAGTTGAGTAC......................................................................... 21 1 7 0.14 1 1 0 0 0 0 0
....................................................CTCCGATATCGTAACTTGAGTAC......................................................................... 23 0 7 0.14 1 0 0 1 0 0 0
........TTCCAAAATCGTCCATATTGA....................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0 0
.........TCCAAAATCGTCCATATTGA....................................................................................................................... 20 0 7 0.14 1 1 0 0 0 0 0
.....................................................CCCGATATCGTAACTTGATTAC......................................................................... 22 2 7 0.14 1 0 1 0 0 0 0
.....................................................CCCGATATCGTAACTTGAGCAC......................................................................... 22 2 7 0.14 1 0 1 0 0 0 0
......................................................CCGATACCGTAACTTGAGTAC......................................................................... 21 1 7 0.14 1 0 0 0 0 1 0
.....................................................TCCGACATCATAACTTGAGTAC......................................................................... 22 2 7 0.14 1 0 0 0 1 0 0
.....................................................TCCGATATCGTAACTTGAGTTC......................................................................... 22 1 7 0.14 1 0 1 0 0 0 0
.......ATTCCAAAATCGTCCATATTGA....................................................................................................................... 22 0 7 0.14 1 0 1 0 0 0 0
.....................................................TCCGATATCGTAAGTTGAGTAC......................................................................... 22 1 7 0.14 1 1 0 0 0 0 0
.....................................................TCCGATATCGTAACTTGGGTAC......................................................................... 22 1 7 0.14 1 0 0 1 0 0 0
.......................................................CGATATCGTAACTTGAGTACT........................................................................ 21 1 7 0.14 1 0 0 0 0 1 0
......................................................CCGATATCGTAACTTTAGTAC......................................................................... 21 1 7 0.14 1 0 0 0 1 0 0
.....................................................TCCGATATCGTAACTTGATCAC......................................................................... 22 2 7 0.14 1 0 1 0 0 0 0
..........CCAAGATCATCCATATTGTATC.................................................................................................................... 22 3 7 0.14 1 0 1 0 0 0 0
......................................................CCGATATCGTAACTTGATTAC......................................................................... 21 1 7 0.14 1 0 1 0 0 0 0
...............................................GGCAACTCCGATTTCGTAACT................................................................................ 21 1 14 0.14 2 2 0 0 0 0 0
.............................................................................TGTTATAATCAGCAGTCACAT.................................................. 21 0 14 0.14 2 0 0 0 1 0 1
........TTCCAAAATCGTCCATATTGAAT..................................................................................................................... 23 0 7 0.14 1 1 0 0 0 0 0
.........GCCAAAATCGTCCGTATTGAAT..................................................................................................................... 22 2 7 0.14 1 1 0 0 0 0 0
......................................................CCGATATCGTCACTTGAGTAC......................................................................... 21 1 7 0.14 1 0 1 0 0 0 0
...............................................GGCAACTCAGATATCGTAACT................................................................................ 21 1 14 0.14 2 1 1 0 0 0 0
...........CAAAATCGTCCATATTGAA...................................................................................................................... 19 0 7 0.14 1 0 1 0 0 0 0
.......................................................CGATATCGTAACTTGAGTACAC....................................................................... 22 1 7 0.14 1 0 1 0 0 0 0
.....................................................TCCGATATCGTCACTTGAGTAC......................................................................... 22 1 7 0.14 1 0 1 0 0 0 0
.....................................................TCCGATATCGTAACTCGAGTAC......................................................................... 22 1 7 0.14 1 0 0 1 0 0 0
................................................GCAACTCCGATATCGTAACTTG.............................................................................. 22 0 14 0.14 2 2 0 0 0 0 0
GGATCAGATTCCAAAATCGTCCATATTG........................................................................................................................ 28 0 7 0.14 1 1 0 0 0 0 0
.....................................................TCCGATATCATAACTTGAGTAC......................................................................... 22 1 7 0.14 1 0 1 0 0 0 0
........................................................GATATCGTCACTTGAGTACAA....................................................................... 21 1 7 0.14 1 0 0 0 0 1 0
................................................GCAACTCCTATATCGTAACTT............................................................................... 21 1 14 0.14 2 0 0 1 1 0 0
...TCAGATTCCAAAATCGGCCATATTG........................................................................................................................ 25 1 7 0.14 1 1 0 0 0 0 0
......................................................CCGCTATCGTAACTTGAGTAC......................................................................... 21 1 7 0.14 1 0 0 0 0 1 0
.....................................................TCCGATATCGTAAATTGAGTAC......................................................................... 22 1 7 0.14 1 1 0 0 0 0 0
......................................................CCGATATCGGAACTTGAGTAC......................................................................... 21 1 7 0.14 1 0 0 0 1 0 0
.....................................................TCCGATATCGTAATTTGAGTAC......................................................................... 22 1 7 0.14 1 0 1 0 0 0 0
......................................................CCGATATCGTAACTTCAGTAC......................................................................... 21 1 7 0.14 1 1 0 0 0 0 0
...TCAGATTCCAAAATCGTGCATATTGA....................................................................................................................... 26 1 7 0.14 1 1 0 0 0 0 0
...TCAGATTCCAAAATCGTCCATATTGA....................................................................................................................... 26 0 7 0.14 1 1 0 0 0 0 0
...TCAGATTCCAAAATCGTCCATA........................................................................................................................... 22 0 7 0.14 1 1 0 0 0 0 0
......................................................CCGATATCGTACCTTGAGTAC......................................................................... 21 1 7 0.14 1 0 1 0 0 0 0
.........TCCAAAATCGTCCATATTGAGT..................................................................................................................... 22 1 7 0.14 1 0 1 0 0 0 0
........................................................GATATCGTAACTTGAGTACAAT...................................................................... 22 0 7 0.14 1 0 0 0 1 0 0
......................................................CTGATATCGTAACTTGAGTAC......................................................................... 21 1 7 0.14 1 0 1 0 0 0 0
......................................................CCGATATCGTAACTTGTGTAC......................................................................... 21 1 7 0.14 1 0 1 0 0 0 0
..ACCATATTCCAAAATCGTC............................................................................................................................... 19 2 7 0.14 1 0 0 0 0 0 1
.....................................................GCCGATATCGTAACTTGAGTAC......................................................................... 22 1 7 0.14 1 1 0 0 0 0 0
......................................................TCGATATCGTAACTTGAGTAC......................................................................... 21 1 7 0.14 1 0 0 0 1 0 0
.....................................................CCCGATATCGTAACTTGTGGA.......................................................................... 21 3 15 0.13 2 0 2 0 0 0 0
.....................................................TCCGATATCGTAACTTGAGTG.......................................................................... 21 1 15 0.13 2 1 0 1 0 0 0
.....................................................TACGATATCGTAACTTGAGTA.......................................................................... 21 1 15 0.13 2 0 0 1 1 0 0
....................................................CTCCGATATCGTAACTTGA............................................................................. 19 0 15 0.13 2 0 0 2 0 0 0
.................................................CAACTCCGATATCGTAACTTGA............................................................................. 22 0 15 0.13 2 2 0 0 0 0 0
....................................................CTCCGATATCGTGACTTGAGT........................................................................... 21 1 15 0.13 2 2 0 0 0 0 0
.....................................................TCCGATATCGTACCTTGAGTA.......................................................................... 21 1 15 0.13 2 2 0 0 0 0 0
...............................................GGCAACTCCGATCTCGTAACT................................................................................ 21 1 15 0.13 2 2 0 0 0 0 0
.....................................................TCCGATATCGTAACTTTAGTA.......................................................................... 21 1 15 0.13 2 0 0 2 0 0 0
.....................................................TCCGATATCGTAACTTGAGTACC........................................................................ 23 1 8 0.13 1 0 1 0 0 0 0
.............AAATCGTCCATATTGAAT..................................................................................................................... 18 0 8 0.13 1 1 0 0 0 0 0
...........................................................ATAGTAACTTGAGTACAAT...................................................................... 19 1 9 0.11 1 0 0 1 0 0 0
........................................................GATATCGTCACTGGGGTACAA....................................................................... 21 3 9 0.11 1 0 0 0 0 1 0
.............................................TTGGCACCTCCGATATCGTAA.................................................................................. 21 1 13 0.08 1 0 0 0 0 0 1
..............................................TGGCAACTCCGATATCGTGGC................................................................................. 21 2 13 0.08 1 1 0 0 0 0 0
..............................................TGGCAACTCCGATGTCGTAA.................................................................................. 20 1 13 0.08 1 1 0 0 0 0 0
.............................................TTGGCAACTCCGATATCGTAAC................................................................................. 22 0 13 0.08 1 1 0 0 0 0 0
.............................................TTGGCAACTCCGACATCGTAA.................................................................................. 21 1 13 0.08 1 0 0 0 0 0 1
..............................................TGGCAACTCCGATATCGCAA.................................................................................. 20 1 13 0.08 1 0 1 0 0 0 0
..............................................TGGCAACTCCGCTATCGTAA.................................................................................. 20 1 13 0.08 1 1 0 0 0 0 0
..............................................TGGCAACTCCGATATCTTAAC................................................................................. 21 1 13 0.08 1 1 0 0 0 0 0
.............................................TTGGCAACTCCGATATCTTAA.................................................................................. 21 1 13 0.08 1 0 0 1 0 0 0
.............................................TTGGCAACTCCGGTATCGTAA.................................................................................. 21 1 13 0.08 1 1 0 0 0 0 0
.............................................TTGGCAACTCCGATATCGT.................................................................................... 19 0 13 0.08 1 1 0 0 0 0 0
..............................................TGGCAACTCCAATATCGTATC................................................................................. 21 2 13 0.08 1 0 0 1 0 0 0
..............................................TGGCAACTCCTATATCGTAAC................................................................................. 21 1 13 0.08 1 0 0 1 0 0 0
.............................................TTGGCAACTCCGCTATCGTAA.................................................................................. 21 1 13 0.08 1 1 0 0 0 0 0
...................................TCTTTTAGAATAGGCAACTC............................................................................................. 20 3 13 0.08 1 0 0 0 0 1 0
................................................GCAACTCCGATATCGTAG.................................................................................. 18 1 14 0.07 1 1 0 0 0 0 0
................................................GTAACTCCGATATCGTAACTT............................................................................... 21 1 14 0.07 1 1 0 0 0 0 0
................................................GCAACTCCGATAACGTAACTT............................................................................... 21 1 14 0.07 1 1 0 0 0 0 0
......................................................CCGATATCGTAACTTGAGTAGA........................................................................ 22 1 14 0.07 1 0 1 0 0 0 0
...............................................GGCAACTCCGATATCGTAACG................................................................................ 21 1 14 0.07 1 1 0 0 0 0 0
...............................................GGCAACTCCGGTGTCGTAA.................................................................................. 19 2 14 0.07 1 1 0 0 0 0 0
...............................................GGCAACTCCGATATGGTAA.................................................................................. 19 1 14 0.07 1 1 0 0 0 0 0
...............................................GGCAACTCCCATATCGTAACT................................................................................ 21 1 14 0.07 1 1 0 0 0 0 0
..............................................GGGCAACTCCGATATCGTAAC................................................................................. 21 1 14 0.07 1 0 1 0 0 0 0
...............................................GGCAACTCCTATATCGTAACT................................................................................ 21 1 14 0.07 1 0 0 1 0 0 0
..............................................GGGCAACTACGATATCGTAAC................................................................................. 21 2 14 0.07 1 0 1 0 0 0 0
.............................................................................CGTTATAATCAGCAGTCATAGG................................................. 22 3 14 0.07 1 0 1 0 0 0 0
...............................................TGCAACTCCGATATCGTAACTTG.............................................................................. 23 1 14 0.07 1 0 0 0 0 1 0
................................................GCAAATCCGATATCGTAACTT............................................................................... 21 1 14 0.07 1 0 0 1 0 0 0
................................................GCAACTCCGATTTCGTAACT................................................................................ 20 1 14 0.07 1 1 0 0 0 0 0
..............................................................................GTTATAATCAGCAGTCACATG................................................. 21 0 14 0.07 1 0 0 1 0 0 0
...............................................GGCAACTCCGATATCGTA................................................................................... 18 0 14 0.07 1 1 0 0 0 0 0
................................................GCAACTCCGATATCGTAACTG............................................................................... 21 1 14 0.07 1 1 0 0 0 0 0
................................................GCAACTCCGATACCGTAACTT............................................................................... 21 1 14 0.07 1 1 0 0 0 0 0
...............................................AGCAACTCCGATATCGTAACTT............................................................................... 22 1 14 0.07 1 1 0 0 0 0 0
....................................................ATCCGATATCGTAACTTGAGTA.......................................................................... 22 1 15 0.07 1 0 1 0 0 0 0
.....................................................TCCGATATCGTAACTTGTGGA.......................................................................... 21 2 15 0.07 1 0 1 0 0 0 0
.....................................................TACGACATCGTAACTTGAGTA.......................................................................... 21 2 15 0.07 1 0 0 1 0 0 0
..................................................CAATCCGATATCGTAACTTGAGTA.......................................................................... 24 2 15 0.07 1 1 0 0 0 0 0
.....................................................TCCGATGTCGTAACTTGAGTA.......................................................................... 21 1 15 0.07 1 0 0 0 1 0 0
.................................................CAACTCCGATATGGTAACTTG.............................................................................. 21 1 15 0.07 1 1 0 0 0 0 0
..................................................AACTCCGATATCGTAACGT............................................................................... 19 1 15 0.07 1 0 1 0 0 0 0
.....................................................TCCGATATCGTAACTGGAGTA.......................................................................... 21 1 15 0.07 1 0 0 0 0 1 0
....................................................CTCCGATATCGTAACTAGAGT........................................................................... 21 1 15 0.07 1 0 0 0 0 1 0
.....................................................TCCGATATCGTAACTTGGGTA.......................................................................... 21 1 15 0.07 1 1 0 0 0 0 0
......................................................CCGATATCGTAACTTGAGCA.......................................................................... 20 1 15 0.07 1 0 0 0 1 0 0
.....................................................CCCGATATCGTAACTTGACTA.......................................................................... 21 2 15 0.07 1 0 1 0 0 0 0
.............................................TTGGCGACTCCGGTGTCGTAA.................................................................................. 21 3 15 0.07 1 1 0 0 0 0 0
.....................................................TCCGATATCGTAACTTGAG............................................................................ 19 0 15 0.07 1 0 0 1 0 0 0
......................................................CCGATATCGTAACTTGAGTAG......................................................................... 21 1 15 0.07 1 0 0 0 0 1 0
.....................................................TCCGATATCGTAACTTGAGTT.......................................................................... 21 1 15 0.07 1 0 1 0 0 0 0
........................................................GATATCGTAACTTGAGTA.......................................................................... 18 0 15 0.07 1 0 0 0 0 1 0
..................................................AACTCCGATATCGTAACT................................................................................ 18 0 15 0.07 1 1 0 0 0 0 0
.....................................................CCCGATATCGTAACTTGAG............................................................................ 19 1 15 0.07 1 0 1 0 0 0 0
.....................................................TCCGATATCGCAGCTTGAGTA.......................................................................... 21 2 15 0.07 1 0 0 0 1 0 0
..................................................AACTCCGATATCATAACTTGA............................................................................. 21 1 15 0.07 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:15973329-15973476 - dan_234 CC--TAGTCTAAGGTT-TTAGCAGGTATAACTTAGAACAGAAAATACTAACCGTTGAGGCTATAGCATTGAACTCATGTTACAATATTAGTCGTCAGTGTACCTATTTAGAAAT------------------------------TATTTGA----------------------TTG--ATCATAAGAAGATTTTGT---------------------GAATT----------------------AT----TT-
droBip1 scf7180000395051:20052-20199 + AC--AAGAGTAAAGTT-TTAGCAAGTATAACTTGGAACAGAAGATACAGGCGGTTGAAGCTTTAGTAATGGACTTTTTTTATAGTACCATCCGTCAGTGTATATATTTAGAA------------------TATTAACTATT---------------------------------AA--CTATTTATAAGCTTTTGT---------------------G-----------------------AACAA----TT-
droKik1 scf7180000302707:512311-512456 - AC--AAGATTAAGATTTTTAGAATCTATACATTAGAACAGAAGTTATGGACCTTTGAAGTTCGAGTATTGAACTCGTGTTACAGTTTTGCTCGTCAGTGTAGATCTAAGAA--T----------------GATTTTCAATT---------------------------------TG--TCCCTTAAAATATTTTGT---------------------T-------------------------CA-----AT-
droFic1 scf7180000449047:2468-2548 - AG---------------------------------AAAAAAAGTTACAGACCTTTGAAGTTGAAACAATGAAATCGTGTTACAGTTTTGCTCGTCAGTGTATATATATATA------------------------------------------------------------------------------------------------------------------------------------------TAT-
droEle1 scf7180000490688:73387-73414 + TATT--T--------------------------------------------CT------------------------------------------------------------------------------------------------------------------------TTG--AGATCCAGAAGTTCT--------------------------------------------------------TGT-
droRho1 scf7180000777765:15946-16085 - AGTC--C---AAGATTTTTAGCGTGTATAAAGTAGAAAAGAAGATACAGACCTTTGAAGTTAGAGTATTGAACTCGTGTTTAAGTTTTGCTCGTCGGTGTATATG-----ATAT------------------------------TG----------------------------------------------TTGTCCGATTTTGACAAAACTAAAAGAGTA----------------------AT----TC-
droBia1 scf7180000302386:176486-176584 - CTTA-AAAACAAGATCTTCAAAATGCGTGCATTAGAAAAAAAGTTACTAACTTTTGAAGTTGAAACATTTAACTCGTGTTACAGTTCTGCTCGTCAGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414771:3355-3395 - ACTT--A-------------A------------------AAATTA--------------------------AA-----------------------------------------------------------------------------------------------------TGAGATCATA----ATTCTTAT---------------------TAATG----------------------AA----CA-
droEug1 scf7180000409159:4116-4195 - T-------------------------------TAGAAAAAAAGTTACAGACCTTTGAAGTTGCAACAAGGAACTCGTGTTACAGTTTTGCTCGTCAGTGTATATTTAAAGA----------------------------------------------------------------------------------------------------------------------------------------------
droSim2 node_11694:5051-5182 + TATT--A-------------A------------------AAAGTATAATAAACTTAAAGGGGATA--TCAACTTCATAATGGA--ATTGGTAA---------------------AACATAACATACAAATTAAG---GTCAAATTCTTTGA----------------------CTA--AAAATAAG-----------------------------------GAACAAAATTGCTCAACCCAGGCATTTCTTT-
droSec2 scaffold_42:284412-284425 - TTTC--T---G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT--------------------------------------------------------CTGT-
droYak3 v2_chrUn_3796:387-551 - AC--AAGACTAAGATTATTATCGTACATAAAATAGGAGAGAAGATACTGACCGTTGAAGTTAGAATATACAACTCGTGTTACAGTTTTGCTCGTCAGTGTATATATTCTGT-----------------ACGAAGTGCAATT----CGCTTATCGGGTATAAAAAGGTGTTACTTTA--A---------------GT---------------------T----------------------CAATAG----TT-
dp5 Unknown_group_15:42940-42940 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_18:1857759-1857767 + GATT--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAT-
droWil2 scf2_1100000004839:25596-25648 - TATA--TA-------------------------------CA-------------------------------------------------------------------------------------------------------------------TATAAAGATAGTTTCATTTAA-----------------------------------------------GAATATTACTTAATCCAAAGAT----TT-
droMoj3 scaffold_1815:8628-8770 - AA--CACTGTAAGCTC-TTATAAACTACAAA-------GCACTTCAAACCTCTTATAAATTACAA-------------------------------------------------ACTATATCAAACTTATGAGATCCATTAGATTTCTTGA----AGAAAAAAAAAATTTAACTAAG-----------------------------------------------AAACTTTAATTAATCCAGTCATTTTTTTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CC--TAGTCTAAGGTT-TTAGCAGGTATAACTTAGAACAGAAAATACTAACCGTTGAGGCTATAGCATTGAACTCATGTTACAATATTAGTCGTCAGTGTACCTATTTAGAAAT------------------------------TATTTGA----------------------TTG--ATCATAAGAAGATTTTGT---------------------GAATT----------------------AT----TT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................TTGAGGCTATAGCATTGAACT...................................................................................................................................................................................211548.407262841721381329
...............................................................................TACAATATTAGTCGTCAGTGT.........................................................................................................................................................211420.07281611741314541
................................................................................ACAATATTAGTCGTCAGTGTA........................................................................................................................................................211410.57148583075921
......................................................TGAGGCTATAGCATTGAACTC..................................................................................................................................................................................21157.8011785428117
........................................AAAATACTAACCGTTGAGGCT................................................................................................................................................................................................2152.6013370102
......................................................TGAGGCTATAGCATTGAACT...................................................................................................................................................................................20152.33353200012
...............................................................................TACAATATTAGTCGTCAGTG..........................................................................................................................................................20142.21319200155
..................TAGCAGGTATAACTTAGAACAGA....................................................................................................................................................................................................................2361.8311161102
..............................................................................TTACAATATTAGTCGTCAGTG..........................................................................................................................................................21141.79255000119
.................................AGAACAGAAAATACTAACCGT.......................................................................................................................................................................................................2141.506001014
................................................................................ACAATATTAGTCGTCAGTGT.........................................................................................................................................................20141.3619720073
...............................TTAGAACAGAAAATACTAACC.........................................................................................................................................................................................................2141.255140000
..............TT-TTAGCAGGTATAACTTAGAAC.......................................................................................................................................................................................................................2361.177141001
...............................................................................TACAATATTAGTCGTCAGTGTA........................................................................................................................................................22141.0715510180
........................................................AGGCTATAGCATTGAACTCAT................................................................................................................................................................................21150.73111000001
..................TAGCAGGTATAACTTAGAACAG.....................................................................................................................................................................................................................2260.674210100
.....................................................TTGAGGCTATAGCATTGAAC....................................................................................................................................................................................20150.6710621010
.......................................................GAGGCTATAGCATTGAACTC..................................................................................................................................................................................20150.609900000
..........................................AATACTAACCGTTGAGGCTATA.............................................................................................................................................................................................2250.603300000
........................................AAAATACTAACCGTTGAGGCC................................................................................................................................................................................................2150.603030000
....................................ACAGAAAATACTAACCGTTGA....................................................................................................................................................................................................2150.603021000
.........................................AAATACTAACCGTTGAGGCTA...............................................................................................................................................................................................2150.603110001
...............................................................................TACAATATTAGTCGTCAGTGC.........................................................................................................................................................21140.578050120
.......................................................GAGGCTATAGCATTGAACTCA.................................................................................................................................................................................21150.538800000
...............................TTAGAACAGAAAATACTAACCGT.......................................................................................................................................................................................................2340.502000101
..............................................................................TTACAATATTAGTCGTCAGTGT.........................................................................................................................................................22140.507230011
...............T-TTAGCAGGTATAACTTAGAAC.......................................................................................................................................................................................................................2260.503030000
.....................................................TTGAGGCTATAGCATTGAACTC..................................................................................................................................................................................22150.477400003
..................................................CCGTTGAGGCTATAGCATTGA......................................................................................................................................................................................21140.436600000
...................................................CGTTGAGGCTATAGCATTGA......................................................................................................................................................................................20140.436300102
.....................................................TTGAGGCTATAGCATTGAACA...................................................................................................................................................................................21150.406000006
........................................AAAATACTAACCGTTGAGGC.................................................................................................................................................................................................2050.402110000
......................................AGAAAATACTAACCGTTGAGG..................................................................................................................................................................................................2150.402000011
.......................................................GAGGCTATAGCATTGAACT...................................................................................................................................................................................19150.406600000
...............................................................................TACAATATTAGTCGTCAGTGTT........................................................................................................................................................22140.365300020
.................TTAGCAGGTATAACTTAGAACAG.....................................................................................................................................................................................................................2360.332110000
........................................................AGGCTATAGCATTGAACTC..................................................................................................................................................................................19150.335410000
.....................................................TTGAGGCTATAGCATTGAA.....................................................................................................................................................................................19150.335000212
..............TT-TTAGCAGGTATAACTTAG..........................................................................................................................................................................................................................2060.332000101
..............TT-TTAGCAGGTATAACTTAGA.........................................................................................................................................................................................................................2160.332000200
.................TTAGCAGGTATAACTTAGAAC.......................................................................................................................................................................................................................2160.332110000
.................................................................................CAATATTAGTCGTCAGTGTA........................................................................................................................................................20140.294400000
.....................................................TTGAGGCTATAGCATTGA......................................................................................................................................................................................18150.274000202
.....................................................TTGAGGCTATAGCATTGAACC...................................................................................................................................................................................21150.274030001
................................TAGAACAGAAAATACTAACCGT.......................................................................................................................................................................................................2240.251000010
..................................GAACAGAAAATACTAACCGTT......................................................................................................................................................................................................2140.251000001
...............................TTAGAACAGAAAATACTAACCG........................................................................................................................................................................................................2240.251100000
..................................GAACAGAAAATACTAACCGTTG.....................................................................................................................................................................................................2240.251000010
................................TAGAACAGAAAATACTAACCG........................................................................................................................................................................................................2140.251010000
................................................................................ACAATATTAGTCGTCAGTG..........................................................................................................................................................19140.213000030
.........................................AAATACTAACCGTTGAGGCTAT..............................................................................................................................................................................................2250.201010000
........................................AAAATACTAACCGTTGAGGCA................................................................................................................................................................................................2150.201010000
......................................AGAAAATACTAACCGTTGAGGC.................................................................................................................................................................................................2250.201010000
.........................................AAATACTAACCGTTGAGGCT................................................................................................................................................................................................2050.201010000
........................................................AGGCTATAGCATTGAACTCA.................................................................................................................................................................................20150.203300000
............................................TACTAACCGTTGAGGCTATAGC...........................................................................................................................................................................................2250.201010000
...........................................ATACTAACCGTTGAGGCTATAG............................................................................................................................................................................................2250.201000001
..........................................AATACTAACCGTTGAGGCTAT..............................................................................................................................................................................................2150.201100000
..........................................AATACTAACCGTTGAGGCT................................................................................................................................................................................................1950.201000001
....................................ACAGAAAATACTAACCGTTGT....................................................................................................................................................................................................2150.201000001
...................AGCAGGTATAACTTAGAACAGT....................................................................................................................................................................................................................2260.171000001
..............TT-TTAGCAGGTATAACTTAGAAA.......................................................................................................................................................................................................................2360.171010000
...............T-TTAGCAGGTATAACTTAGA.........................................................................................................................................................................................................................2060.171100000
.................TTAGCAGGTATAACTTAGT.........................................................................................................................................................................................................................1960.171000001
..................TAGCAGGTATAACTTAGAAC.......................................................................................................................................................................................................................2060.171010000
......................AGGTATAACTTAGAACAGA....................................................................................................................................................................................................................1960.171100000
...............................................TAACCGTTGAGGCTATAGC...........................................................................................................................................................................................1960.171000001
.................TTAGCAGGTATAACTTAGA.........................................................................................................................................................................................................................1960.171000001
..................TAGCAGGTATAACTTAGAACA......................................................................................................................................................................................................................2160.171100000
...............................................TAACCGTTGAGGCTATAGCATT........................................................................................................................................................................................2260.171100000
...............................................................................TACAATATTAGTCGTCAGT...........................................................................................................................................................19140.142100001
...................................................CGTTGAGGCTATAGCATTGAAC....................................................................................................................................................................................22140.142110000
...................................................CGTTGAGGCTATAGCATTGAACT...................................................................................................................................................................................23140.142011000
................................................................................ACAATATTAGTCGTCAGTGTT........................................................................................................................................................21140.142100010
................................................................................ACAATATTAGTCGTCAGTA..........................................................................................................................................................19140.142000002
...........................................................CTATAGCATTGAACTCATGTT.............................................................................................................................................................................2170.141100000
.............................................................ATAGCATTGAACTCATGTTAC...........................................................................................................................................................................2170.141100000
.........................................................GGCTATAGCATTGAACTCA.................................................................................................................................................................................19150.132000002
....................................................GTTGAGGCTATAGCATTGAAC....................................................................................................................................................................................21150.132010001
....................................................GTTGAGGCTATAGCATTGAAA....................................................................................................................................................................................21150.132000002
.................................................ACCGTTGAGGCTATAGCATTG.......................................................................................................................................................................................21130.081100000
................................................AACCGTTGAGGCTATAGCATTG.......................................................................................................................................................................................22130.081100000
................................................AACCGTTGAGGCTATAGCATT........................................................................................................................................................................................21130.081100000
...............................................................................TACAATATTAGTCGTCAGTGTC........................................................................................................................................................22140.071000001
................................................................................ACAATATTAGTCGTCAGTGTG........................................................................................................................................................21140.071000010
..................................................CCGTTGAGGCTATAGCAT.........................................................................................................................................................................................18140.071010000
................................................................................ACAATATTAGTCGTCAGTGTC........................................................................................................................................................21140.071000100
...................................................CGTTGAGGCTATAGCATTG.......................................................................................................................................................................................19140.071100000
..............................................................................TTACAATATTAGTCGTCAGTGC.........................................................................................................................................................22140.071010000
................................................................................ACAATATTAGTCGTCAGTGTAA.......................................................................................................................................................22140.071100000
.................................................................................CAATATTAGTCGTCAGTG..........................................................................................................................................................18140.071100000
.....................................................TTGAGGCTATAGCATTGAACG...................................................................................................................................................................................21150.071000010
.....................................................TTGAGGCTATAGCATTGT......................................................................................................................................................................................18150.071000100
.....................................................TTGAGGCTATAGCATTGAG.....................................................................................................................................................................................19150.071000100
....................................................GTTGAGGCTATAGCATTG.......................................................................................................................................................................................18150.071000001
.........................................................GGCTATAGCATTGAACTCAT................................................................................................................................................................................20150.071100000
......................................................TGAGGCTATAGCATTGAAC....................................................................................................................................................................................19150.071100000
......................................................TGAGGCTATAGCATTGAACTCG.................................................................................................................................................................................22150.071100000
......................................................TGAGGCTATAGCATTGAACTA..................................................................................................................................................................................21150.071000001
.....................................................TTGAGGCTATAGCATTGAACTT..................................................................................................................................................................................22150.071000001
....................................................GTTGAGGCTATAGCATTGA......................................................................................................................................................................................19150.071000100
......................................................TGAGGCTATAGCATTGAACTCA.................................................................................................................................................................................22150.071000001
.....................................................TTGAGGCTATAGCATTGAACTA..................................................................................................................................................................................22150.071000001
droBip1
AC--AAGAGTAAAGTT-TTAGCAAGTATAACTTGGAACAGAAGATACAGGCGGTTGAAGCTTTAGTAATGGACTTTTTTTATAGTACCATCCGTCAGTGTATATATTTAGAA------------------TATTAACTATT---------------------------------AA--CTATTTATAAGCTTTTGT---------------------G-----------------------AACAA----TT-SizeHit CountTotal NormTotal
No Reads
droKik1
AC--AAGATTAAGATTTTTAGAATCTATACATTAGAACAGAAGTTATGGACCTTTGAAGTTCGAGTATTGAACTCGTGTTACAGTTTTGCTCGTCAGTGTAGATCTAAGAA--T----------------GATTTTCAATT---------------------------------TG--TCCCTTAAAATATTTTGT---------------------T-------------------------CA-----AT-SizeHit CountTotal NormTotal
No Reads
droFic1
AG---------------------------------AAAAAAAGTTACAGACCTTTGAAGTTGAAACAATGAAATCGTGTTACAGTTTTGCTCGTCAGTGTATATATATATA------------------------------------------------------------------------------------------------------------------------------------------TAT-SizeHit CountTotal NormTotal
No Reads
droEle1
TATT--T--------------------------------------------CT------------------------------------------------------------------------------------------------------------------------TTG--AGATCCAGAAGTTCT--------------------------------------------------------TGT-SizeHit CountTotal NormTotal
No Reads
droRho1
AGTC--C---AAGATTTTTAGCGTGTATAAAGTAGAAAAGAAGATACAGACCTTTGAAGTTAGAGTATTGAACTCGTGTTTAAGTTTTGCTCGTCGGTGTATATG-----ATAT------------------------------TG----------------------------------------------TTGTCCGATTTTGACAAAACTAAAAGAGTA----------------------AT----TC-SizeHit CountTotal NormTotal
No Reads
droBia1
CTTA-AAAACAAGATCTTCAAAATGCGTGCATTAGAAAAAAAGTTACTAACTTTTGAAGTTGAAACATTTAACTCGTGTTACAGTTCTGCTCGTCAGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACTT--A-------------A------------------AAATTA--------------------------AA-----------------------------------------------------------------------------------------------------TGAGATCATA----ATTCTTAT---------------------TAATG----------------------AA----CA-SizeHit CountTotal NormTotal
No Reads
droEug1
T-------------------------------TAGAAAAAAAGTTACAGACCTTTGAAGTTGCAACAAGGAACTCGTGTTACAGTTTTGCTCGTCAGTGTATATTTAAAGA----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSim2
TATT--A-------------A------------------AAAGTATAATAAACTTAAAGGGGATA--TCAACTTCATAATGGA--ATTGGTAA---------------------AACATAACATACAAATTAAG---GTCAAATTCTTTGA----------------------CTA--AAAATAAG-----------------------------------GAACAAAATTGCTCAACCCAGGCATTTCTTT-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TTTC--T---G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT--------------------------------------------------------CTGT-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AC--AAGACTAAGATTATTATCGTACATAAAATAGGAGAGAAGATACTGACCGTTGAAGTTAGAATATACAACTCGTGTTACAGTTTTGCTCGTCAGTGTATATATTCTGT-----------------ACGAAGTGCAATT----CGCTTATCGGGTATAAAAAGGTGTTACTTTA--A---------------GT---------------------T----------------------CAATAG----TT-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................TGTTACAGTTTTGCTCGTCAGTGTA........................................................................................................................................................25200.35703000040000
.............................................................................GTTACAGTTTTGCTCGTCAGTGTATA......................................................................................................................................................26130.23311000010000
..........................................................GTTAGAATATACAACTCGTGT..............................................................................................................................................................................21150.13202000000000
............................................................................TGTTACAGTTTTGCTCGTCAGT...........................................................................................................................................................22200.10201000010000
...............................................TGACCGTTGAAGTTAGAATATACAACT...................................................................................................................................................................................27100.10100100000000
.......................TACATAAAATAGGAGAGAAG..................................................................................................................................................................................................................20200.10202000000000
...............TATTATCGTACATAAAATAGGAGAGA....................................................................................................................................................................................................................26200.10202000000000
.............................AAATAGGAGAGAAGATACTGACC.........................................................................................................................................................................................................23200.10200200000000
.................................................................TATACAACTCGTGTTACAGTT.......................................................................................................................................................................21150.07101000000000
.....................................................TTGAAGTTAGAATATACAACT...................................................................................................................................................................................21150.07101000000000
.........................................................AGTTAGAATATACAACTCGTG...............................................................................................................................................................................21150.07101000000000
..........................................................GTTAGAATATACAACTCGTGG..............................................................................................................................................................................21150.07110000000000
............................................................TAGAATATACAACTCGTGTTA............................................................................................................................................................................21150.07100000010000
.......................................GAAGATACTGACCGTTGAAGTTAGAATA..........................................................................................................................................................................................28170.06101000000000
.......................................GAAGATACTGACCGTTGAAGTTAGAAT...........................................................................................................................................................................................27170.06101000000000
.....AGACTAAGATTATTATCGTACA..................................................................................................................................................................................................................................22200.05101000000000
.........................................AGATACTGACCGTTGAAGTTA...............................................................................................................................................................................................21200.05101000000000
....................................AGAGAAGATACTGACCGTTGAAG..................................................................................................................................................................................................23200.05100100000000
......................................AGAAGATACTGACCGTTGAAG..................................................................................................................................................................................................21200.05110000000000
....................TCGTACATAAAATAGGAGAGAAGATA...............................................................................................................................................................................................................26200.05101000000000
................................................................................ACAGTTTTGCTCGTCAGTG..........................................................................................................................................................19200.05100000010000
.......................................................................ACTCGTGTTACAGTTTTGCT..................................................................................................................................................................20200.05101000000000
.C--AAGACTAAGATTATTATCGT.....................................................................................................................................................................................................................................21200.05100000010000
..........................ATAAAATAGGAGAGAAGATAC..............................................................................................................................................................................................................21200.05101000000000
..........................................................................CGTGTTACAGTTTTGCTCGTC..............................................................................................................................................................21200.05101000000000
..................................GGAGAGAAGATACTGACCGTTGAAGT.................................................................................................................................................................................................26200.05100100000000
............................................................................TGTTACAGTTTTGCTCGTCAGTGT.........................................................................................................................................................24200.05100000010000
........................................................................CTCGTGTTACAGTTTTGCTCG................................................................................................................................................................21200.05101000000000
.........................CATAAAATAGGAGAGAAGAT................................................................................................................................................................................................................20200.05101000000000
dp5
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GATT--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAT-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TATA--TA-------------------------------CA-------------------------------------------------------------------------------------------------------------------TATAAAGATAGTTTCATTTAA-----------------------------------------------GAATATTACTTAATCCAAAGAT----TT-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
TATA--TA-------------------------------CA-------------------------------------------------------------------------------------------------------------------TATAAAGATAGTTTCATT...............................................................................2612.00200020
TATA--TA-------------------------------CA-------------------------------------------------------------------------------------------------------------------TATAAAGATAGTTTCATTT..............................................................................2711.00101000
..............................................................................................................................................................................TAA-----------------------------------------------GAATATTACTTAATCCAAAGAT----TT-2711.00101000
......TA-------------------------------CA-------------------------------------------------------------------------------------------------------------------TATAAAGATAGTTTCATTTAA-----------------------------------------------GAA..........................2811.00100010
droMoj3
AA--CACTGTAAGCTC-TTATAAACTACAAA-------GCACTTCAAACCTCTTATAAATTACAA-------------------------------------------------ACTATATCAAACTTATGAGATCCATTAGATTTCTTGA----AGAAAAAAAAAATTTAACTAAG-----------------------------------------------AAACTTTAATTAATCCAGTCATTTTTTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/15/2015 at 03:12 PM