ID:

dan_2319

 Coordinate:

scaffold_13337:532506-532656 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.0 -21.7 -21.7

Flybase annnotation

CDS [Dana\GF24861-cds]; exon [dana_GLEANR_9550:12]; intron [Dana\GF24861-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGCATTTTATATTTTGCTCTCTGTGTCTGCCGTCTCTGTTGTCGTTCCTTCTCGTTGTTCATGTTTGCGTTACGTTTCTTGCTCGTTGTTTTGTGACTGCCACGCCTACACGCTGCGCCCTCATTTCGCCCAACAAATTAAAAACAAAACCAAACACGAAACCAAATGCACCCCAATCGCAACCGATTTTTAAACAAAAGCCTCCCGGGGCGGTCTAGCCAATCGCCAGCTGCCCTCCACGAACGGGGCC
**************************************************..(((((((...((..((((((..(((((.((....(((((((((((..((((.((......)))).))..))))................))))))).......)).)))))..))))))...))...)))).)))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
.............................................................................................................................................AAAACAAAACCAAACACGA........................................................................................... 19 0 1 1.00 1 1 0 0
...............................................................................................................................................AACAAAACCAAACACGAAACCAAAT................................................................................... 25 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................................GGTCTAGCCAATCGCCAGCTGCCC............... 24 0 1 1.00 1 1 0 0
.................................................................................................................................................................................................AACAAAAGCCTCCCGGGGC....................................... 19 0 1 1.00 1 1 0 0
............................................................................................................................................AAAAACAAAATCAAACACGA........................................................................................... 20 1 2 0.50 1 0 1 0
.........................................................................................................................................AGTAAAAACAAAACCAAACAC............................................................................................. 21 1 2 0.50 1 1 0 0
..................................................................................................................................................AAAACCAAACACGACACCA...................................................................................... 19 1 3 0.33 1 1 0 0
.........................................................................................................................................ATTAAAAACAAAACCTAACCC............................................................................................. 21 2 5 0.20 1 1 0 0
.................................................................................................................................................AAAAACCAAACACGAAACC....................................................................................... 19 1 5 0.20 1 1 0 0
.........................................................................................................................................ATTAAAATCGAAACCAAACAC............................................................................................. 21 2 5 0.20 1 0 1 0
............................................................................................................................................AACAACAAAACCAAACACCAAA......................................................................................... 22 2 6 0.17 1 1 0 0
.......................................................................................................................................AAATTTTAAACAAAACCAACCAC............................................................................................. 23 3 10 0.10 1 1 0 0
.............................................................................................................................................AAAAGAAAACCAACCACGAA.......................................................................................... 20 2 13 0.08 1 1 0 0
.............................................................................................................................................AAAAGACAACCAAACACGA........................................................................................... 19 2 13 0.08 1 1 0 0
..............................................................................................................................................AAACAAAACCAAACACGAGAA........................................................................................ 21 2 13 0.08 1 1 0 0
....................................................................................................................................................................................................AAAAGCCGCCCGTGGCGGG.................................... 19 3 14 0.07 1 0 0 1
.............................................................................................................................................AAAACAAAACCCAACCCGAA.......................................................................................... 20 2 15 0.07 1 1 0 0
.....................................................................................................................................ACAAACTAAAAACAAAACCCA................................................................................................. 21 2 18 0.06 1 1 0 0
.................................................................................................................................................CAAAACCAAACAAGAACCC....................................................................................... 19 2 20 0.05 1 1 0 0
...............................................................................................................................................AAAAAAACCAAACACCAAACC....................................................................................... 21 2 20 0.05 1 1 0 0
............................................................................................................................................AAAAACAAGAACAAACACGA........................................................................................... 20 2 20 0.05 1 1 0 0

Anti-sense strand reads

GGCGTAAAATATAAAACGAGAGACACAGACGGCAGAGACAACAGCAAGGAAGAGCAACAAGTACAAACGCAATGCAAAGAACGAGCAACAAAACACTGACGGTGCGGATGTGCGACGCGGGAGTAAAGCGGGTTGTTTAATTTTTGTTTTGGTTTGTGCTTTGGTTTACGTGGGGTTAGCGTTGGCTAAAAATTTGTTTTCGGAGGGCCCCGCCAGATCGGTTAGCGGTCGACGGGAGGTGCTTGCCCCGG
**************************************************..(((((((...((..((((((..(((((.((....(((((((((((..((((.((......)))).))..))))................))))))).......)).)))))..))))))...))...)))).)))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
 M044
female body
 V105
male body
.........................................................................................................................................................TTGTGGTATGTTTTACGTGGGG............................................................................ 22 3 1 1.00 1 0 1 0 0 0
...................................................................................................................CGCGGGAGTAAAACGGGTGG.................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................CATGGGGTTGGCGTTGGTTA............................................................... 20 3 6 0.17 1 0 0 0 1 0
......................................CAACAGCAAGGAAAGGCATCA................................................................................................................................................................................................ 21 3 6 0.17 1 0 0 1 0 0
.........................................................................................................................................................................................................................TGGGTTAGCGATCGACCGGA.............. 20 3 7 0.14 1 0 0 1 0 0
..................................................................................................................ACGTGGGAGTATACCGGGTT..................................................................................................................... 20 3 7 0.14 1 0 0 0 1 0
........CTGTAAAACGAGAGACACA................................................................................................................................................................................................................................ 19 2 7 0.14 1 0 0 1 0 0
................................................................................................................................................................TTGGTATACGTGGGGTTGGT....................................................................... 20 3 10 0.10 1 0 0 1 0 0
..................................................................................GAGCAACAAAACACGAAC....................................................................................................................................................... 18 2 10 0.10 1 1 0 0 0 0
...................................................................................................................CGCGGGAGTAAGGCGGGCTC.................................................................................................................... 20 3 13 0.08 1 0 0 0 0 1
...............................................GTAAGCGCAACATGTACAAA........................................................................................................................................................................................ 20 3 17 0.06 1 0 0 0 0 1
..............................................................................................................................................................CATTGGTTTACGTGGTGGT.......................................................................... 19 3 20 0.05 1 0 0 0 1 0
................................................................................................................................................................TTGGTTTACGTCGGGTTTGT....................................................................... 20 3 20 0.05 1 0 1 0 0 0
................................................................................................................................................TGTTTGGGTTCGTGCTTT......................................................................................... 18 2 20 0.05 1 0 1 0 0 0
................................................................................................................................................................TTGGTTTACGTGTGGTTGGT....................................................................... 20 3 20 0.05 1 0 1 0 0 0
....................................................AGCAACAAGCGCAAACGAAA................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
............................................................................AAGAACGAGCAAGAAAAA............................................................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0
..................................................................................GAGCAACAAAACGCAGACA...................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
................................................................................................................................................TGTTATGGTTCGTGCTTT......................................................................................... 18 2 20 0.05 1 0 0 1 0 0
.........TAGAAAACGAGATACACA................................................................................................................................................................................................................................ 18 2 20 0.05 1 0 0 1 0 0
.............................................AAGGAAGAGAAAGAAGTA............................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:532456-532706 - dan_2319 CCG---------C----ATTTTA--T----ATTTTGC-T----CTCTGTGTCTGCCGT-CTC--------------------------TGT-TGTCGTT--C--------CT--------------------------------------------------------------------T--CTCG------------------------TTGTTCA--------TG-------------TTTGCGTTACGTTT-C-TTGCTCG--TT-G------------T---TT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-CGCCC---AA--------------C---------------------------------------------------AAAT-TAA---AA----------------------A-------------------CAAAACCAA-------------------------------------ACA--------------CG--------A-----A-ACC-AA------AT--GCACCC-----C------AAT-CG--CAA------CCGATTT----TTAAACAAAAGCCTCCCGGGGCGGTCTAGCCAATCGCCAGCTGCCCTCC---ACGAACGGGGCC
droBip1 scf7180000395155:228163-228440 + CCG---------C----ATTTTA--T----ATTTTGCCT----CTCTGTGTCTGCCGT-CTC--------------------------TGT-TGTCGTT--C--------CT--------------------------------------------------------------------T--CTCG------------------------TTGTTCA--------TG-------------TTTGCGTTACGTTT-TCTTGCTCG--TT-G------------T---TT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-CGCCC---AA--------------CAACAAAAT--------------------------------------------AAT-AAA----A----------------------A----------------AA------------------ACAAAAACAAAACCAAAAAAATTCCAAAAAC----------------------------------AC-AA------AT--GCACCCC---CA------AAT-CG--CAA------CCGATTT---TTAAAACAAAAGCCTCCCGGGGCGGTCTAGCCAATCGCCAGCTGCCCTCC---ACGAACGGAGCC
droKik1 scf7180000302441:1232312-1232617 + CTC---------G----ATTTTA--TTT-------GC-T----CTCTGTGTGTGCCGTTC-T--------------------------GGT-TCTCGTT--C------------TCGT---------------------------------------------------------------------------------------------TCGTTCA--------TG-------------TTTGTATTACGTTCCTTTTGCTCG--TT-G------------TACATT--TGTGACTGCCACGCCACGCCCAACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CAACTA-----C-------------------------------------AAAAAAA-AAA--A--AATCTT---------------------------------CACAAA----AATTA------TCAAAAAAAATTC-----------AACAAT---TTGGAACA----CAC----------------AA-AA------AATCGCACCCTTTGCC------AAAAAC-AAAA------TCGGTTTTATGTTAAACAAAAGCCTCCCGTGGTGGTTTAGCCAATCGGCAGTTGCCCTCA---GCGAACGGCACC
droFic1 scf7180000454105:832946-833317 - CCG---------TTTTGTTCTGA--TTT-------GC-T----CTCTGTGTCTGCCGT-C----------------------------TGT-TCTCGTTTTC--------GATCTCGTTATCGTTATCGTTATCGTTAAA--CCGTTA---------------------------------------------------AACCGCATTCAATCGTTCA--------TG-----------TGTTTGTATTACGTTC-TTGTGCTCG--TT-G------------TGTTCG--TTTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTACAAAACCACCAAA-----------------------------------C-------------AATCTGAATCTCTATCTGAATCT---CAATCTGAA-TCAAA------------------TCAAAATCAATTTG-----------C-CAACA--------------CGCAA--ATCA-----A-AC--AAACTCGCATTCGCACCCT--GCCAAATCAAAT-CG--CAT------TCGGTTC----TAAAACAAAAGCCTCCCGCGGCGGTTTAGCCAACCGCCAGTTGCCCTCA---GCGAACGGGAAC
droEle1 scf7180000491249:2901380-2901680 + CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT----------------------------------------T--CGTTATATCGT--------------------------ACTATA------------------------------------TATA---------------------------TCGTTCA--------TG-------------TTTGTATTACGTTCCT-TTGCTCGTGTT-G------------TGTTTT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTATACAACTAC-------------------------------------TACA------------AATCTT------------------------------AATCGCAAATCGCAAAAAAAAAACCAAAATCAATTTG-----------AAAAACA--------------TC---------------------A------ATTTGCACACT--GCA------AAT-TG--CAAAAAATGTGGGTTC----TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAATCGCCAGTTGCCCTCA---GCCAATGGAAAC
droBia1 scf7180000302428:9273381-9273664 - CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTTCAC--------GT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTTATACGTTC-T-ATGCTCG--TT-G------------TGTT-T--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATT--TGCCC---AA--------------CTAC---------------------------------------------AACAAAT-CGA---AA----------------------A----------------AA------------------TCAAAATCAATTTGAAAAAA-----AACCACA--------------CCAAA--ATCA-----AAAAT-AA------ATTCGCACCCT--GCC------AAT-CG--AAA------TCGGTTT----TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAATCGCCAGTTGCCCTCA---GCCAATGGAAAC
droTak1 scf7180000415857:265291-265567 - CTC---------G----AATTTATTTTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTT--C--------GTTCT-----------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTTATACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTAC---------------------------------------------AATAA--------------------------------------------------AA------------------TCAAAATCAATTTGAAAA---------AAACA--------------CCA-A--AA-A-----A-ATCAAA------ATACGCACCCT--GCC------AAT-CC-AAAA------TCGGTTT---CTAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAATCGCCAGTTGCCCTCA---GCCAATGGAAAT
droEug1 scf7180000409466:234250-234524 - CTC---------C----ACTTTA--TTT-------GA-T----CTCTCTGTGTGCCGT-CTC--------------------------TGT-TCTCGTT--C--------GT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTATTACGTTC-T-TTGCTCG--TT-G------------TGTTTCTTTGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CAAC---------------------------------------------AACAAAT-CGC---AA----------------------A-----------------A------------------ACAAAATCAATTTG-----------AAAAACA--------------CCA-AAAATCA-----A-ACC-AA------ACTCGCACCCT--GCC------AAT-CG--AAA------TC---------TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAATCGCCAGTTGCCCTCA---GCGAATGGG---
dm3 chr3L:2510526-2510806 - CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTT--C--------GT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTATTACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCCTCCAA--------------CTTC---------------------------------------------AACAAAT-CGA---AA----------------------A----------------AA------------------CCAAAATCAATTCGAAAA---------CAACA--------------CC-AA--ATCA-----A-ACC-AA------AATCGCACCCT--GCC------AAT-TG--AAA------TCGGTTT----TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAACCGCCAGTTGCCCTCA---GCAAATGGAAAC
droSim2 3l:2398329-2398604 - dsi_28533 CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTT--C--------GT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTATTACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTTC---------------------------------------------AACAATT-CGA---AA----------------------A----------------AA------------------CCAAAATCAATTCG-----------AACAACA--------------CC-AA--ATCA-----A-ACC-AA------ATTCGCACCCT--GCC------AAT-TG--AAA------TCGGTTT----TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAACCGCCAGTTGCCCTCA---GCAAATGGAAAC
droSec2 scaffold_2:2531800-2532075 - CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTT--C--------GT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTATTACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTTC---------------------------------------------AACAAAT-CGA---AA----------------------A----------------AA------------------CCAAAATCAATTCG-----------AACAACA--------------CC-AA--ATCA-----A-ACC-AA------ATTCGCACCCT--GCC------AAT-TG--AAA------TCGGTTT----TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAACCGCCAGTTGCCCTCA---GCAAATGGAAAC
droYak3 3L:9430350-9430640 + CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGTTTCACGTTA------TATCGT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGCATTACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTTC---------------------------------------------AATAAAT-CGAACA------------------------A---CA----AAA-TCGAA------------------CCCAAATCAATTTG-----------AAAAACA--------------CCCAA--ATCA-----A-ACC-AA------ATTCGCACCCT--GCC------AAT-TG--AAA------TCGGTTT----TAAAACAAAAGCCTCCCGTGGCGGTTTAGCCAACCGCCAGTTGCCCTCA---GCAAATGGAAAC
droEre2 scaffold_4784:2523167-2523455 - CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTTCTC--------GTTCTCGT--------------------TC--------------------------------------TTTATATCG------------------------TTGTTCA--------TG-------------TTTGCATTACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTTC---------------------------------------------AACAAATTCGA---A-----------------------A----------------AA------------------CCAAAATCAATTCA-----------AAAAACA--------------CCAAA--ATCA-----A-ACC-AA------ATTCGCACCCT--GCC------AAT-TG--AAA------TCGGTTT----TTAAACAAAAGCCTCCCGTGGTGGTTTAGCCAACCGCCAGTTGCCCTCA---GCAAATGGAAAC
dp5 XR_group6:12491177-12491476 - dps_3178 CG----------------------------------------------------------------------------------------T-TATCGTTACC--------GTTACCGT------------TACCGT--AA--TCGTTATCGTTCCTGTTTTGCTCATGTGTTTTTTCT--------TCCGTTTTG------TGTCGTTCATT--------------------------------------CG----C-TCGCTCG--TT-G------------TAATTTTGTCTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTTTTGCCA---AA--------------AAAA---------------------------------------------AAAAAAA-AAA---AA----------------------A----------------CACCAAAACCAAATA------CAAAATCAAATTC-----------A-----------------------AA--ATCACAACA---AA-AA------ATTCGCACTAC--GA-------AAT-CG-AAAA------TCGGTAT----CTAAACAAAAGCCTCCCGTGGTGGTCTAGCGAATCGCCAGCTGCCATCA---GCGAATGGAGCG
droPer2 scaffold_33:510429-510793 - CTCTCTCTCTCGTTTCGAT-------CT-------GT-TGTTGCTAT--GTGTGCCGT-CTC---------------------------GT-TATCGTTACCGATCTCTCGT------TATCGTTACCGTTACCGT--AA--TCGTTATCGTTCCTGTTTTGCTCATGTGTTTTTTCT--------TCCGTTTTG------TGTCGTTCATT--------------------------------------CG----C-TCGCTCG--TT-G------------TAATTTTGTCTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTTTTGCAA---AA--------------AAAA---------------------------------------------AAAAAAA-A-AACA--AAAAAA------------------------------AAACACCAAAACCAAATA------CAAAATCAAATTC-----------A-----------------------AA--ATCACAACA---AA-AA------ATTCGCACTAC--GA-------AAT-CG-AAAA------TCGGTAT----CTAAACAAAAGCCTCCCGTGGTGGTCTAGCGAATCGCCAGCTGCCATCA---GCGAATGGAGCG
droWil2 scf2_1100000004729:2097918-2098216 - TTG---------T----TTTGTT--TTT-------GT-T----G-TT--GTATGTTGT-C-----------------------------GT-TCATGTTTGT-ATTTCTTGTTTTTCT--------------------TC--------------------------------------CTTATGTTTTTGTTTTGATTCACGCTCGTTCGTTCGTT----------------------------------CGTTCGTTTGGTTGG--TT-GGTTAATTGGTATTATTGC--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCT---AA--------------TCGT---------------------------------------------ACCGCAT-CCA---CC----------------------A----------------AA------------------CTGT---------------------AACTGCA--------------CC-AA--ATT--------------------CTTCGATATC-----G------ATA-AACC--ATAA--------AT----ATAAACCAAAGCCTCCCGTGGTGGTTTAGCCCATCGGCAATTGCCCTCAAATGGCAACGGGACC
droVir3 scaffold_10322:299915-300240 - dvi_594 CTC---------C-T--ATTT-CTCTTT-------GT-A----TATT--GTGCGC-GT-TTTTGCTGCCGCTCAATTTGATTGGTTTGTGA-TTTTGCT--C---------------------------------------------------------------------------------------------------------------TTCCACGTGTTCGTGTACGTTCCATA--TT-------TG----T-TTGTTCG--TTTG--------------A-TT--TAAAATTATCACGCC------CACACTGCTGCGCCTTCTCAC-TACCA---TA-----TACTACACAA----------CAAAATTTATTAAATATCTGATAAACTGCCAAAAATGCAACA---------------------------------------------------AA------------------AAAAAATAAATAAA-----------TAAAAAA--------TCTATAA---------A-----A--AA-AA----------TCATCG------------AAT-TTAA--A--------AATAA----CTAAACAAAAGCCTCCCGTGGTGGTCTAGCCAATCGCCAGCTGCCCTCG---ACGAACGTATCT
droMoj3 scaffold_6680:2336610-2336723 - A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAT-AAA---AA----------------------A----------------TA------------------TTGCAATA--------------------------------------C---------A-----A--AA-AA------ACTCGCATCG------------AAT-CACA--AACA--------AT----CTAAACAAAAGCCTCCCGGGGTGGTCTAGCCAATCGCCAGCTGCCATCC---TCGAACGTGCCC
droGri2 scaffold_15110:225102-225381 + ATG---------CATA-ATTTTA--TTTGTGTTTTGCTT----ATCTGCGTGTGCTTT-C----------------------------CAT-ATTTGTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGTCG--TTTG--------------A-TT--TATATTTCGCACGCC------CACACCGCTGCGCCTCCACAC----CC---ACCGCTATTCTCCCAAAAATAATTTT---------------------------------------AAAA------A----A----------------------AAATCA----ATAACAACA------------------ACGAAATGAATTGC-----------AACAAAATA------------TCA-AAAATTATAACAA-CAA-AA------ATTCGAAACG------------AAT-A-----A------CAAACAT----CTAAACAAAAGCCTCCCGTGGTGGTCTAGCTAATCGCCAGCTGCCCTCG---TCGAACGTGTCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CCG---------C----ATTTTA--T----ATTTTGC-T----CTCTGTGTCTGCCGT-CTC--------------------------TGT-TGTCGTT--C--------CT--------------------------------------------------------------------T--CTCG------------------------TTGTTCA--------TG-------------TTTGCGTTACGTTT-C-TTGCTCG--TT-G------------T---TT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-CGCCC---AA--------------C---------------------------------------------------AAAT-TAA---AA----------------------A-------------------CAAAACCAA-------------------------------------ACA--------------CG--------A-----A-ACC-AA------AT--GCACCC-----C------AAT-CG--CAA------CCGATTT----TTAAACAAAAGCCTCCCGGGGCGGTCTAGCCAATCGCCAGCTGCCCTCC---ACGAACGGGGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................A---AA----------------------A-------------------CAAAACCAA-------------------------------------ACA--------------CG--------A-----................................................................................................................................1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------A-------------------CAAAACCAA-------------------------------------ACA--------------CG--------A-----A-ACC-AA------AT--..............................................................................................................2511.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGCCAATCGCCAGCTGCCC..................2411.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAGCCTCCCGGGGC..........................................1911.001010000
droBip1
CCG---------C----ATTTTA--T----ATTTTGCCT----CTCTGTGTCTGCCGT-CTC--------------------------TGT-TGTCGTT--C--------CT--------------------------------------------------------------------T--CTCG------------------------TTGTTCA--------TG-------------TTTGCGTTACGTTT-TCTTGCTCG--TT-G------------T---TT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-CGCCC---AA--------------CAACAAAAT--------------------------------------------AAT-AAA----A----------------------A----------------AA------------------ACAAAAACAAAACCAAAAAAATTCCAAAAAC----------------------------------AC-AA------AT--GCACCCC---CA------AAT-CG--CAA------CCGATTT---TTAAAACAAAAGCCTCCCGGGGCGGTCTAGCCAATCGCCAGCTGCCCTCC---ACGAACGGAGCCSizeHit CountTotal NormTotal
No Reads
droKik1
CTC---------G----ATTTTA--TTT-------GC-T----CTCTGTGTGTGCCGTTC-T--------------------------GGT-TCTCGTT--C------------TCGT---------------------------------------------------------------------------------------------TCGTTCA--------TG-------------TTTGTATTACGTTCCTTTTGCTCG--TT-G------------TACATT--TGTGACTGCCACGCCACGCCCAACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CAACTA-----C-------------------------------------AAAAAAA-AAA--A--AATCTT---------------------------------CACAAA----AATTA------TCAAAAAAAATTC-----------AACAAT---TTGGAACA----CAC----------------AA-AA------AATCGCACCCTTTGCC------AAAAAC-AAAA------TCGGTTTTATGTTAAACAAAAGCCTCCCGTGGTGGTTTAGCCAATCGGCAGTTGCCCTCA---GCGAACGGCACCSizeHit CountTotal NormTotal
No Reads
droFic1
CCG---------TTTTGTTCTGA--TTT-------GC-T----CTCTGTGTCTGCCGT-C----------------------------TGT-TCTCGTTTTC--------GATCTCGTTATCGTTATCGTTATCGTTAAA--CCGTTA---------------------------------------------------AACCGCATTCAATCGTTCA--------TG-----------TGTTTGTATTACGTTC-TTGTGCTCG--TT-G------------TGTTCG--TTTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTACAAAACCACCAAA-----------------------------------C-------------AATCTGAATCTCTATCTGAATCT---CAATCTGAA-TCAAA------------------TCAAAATCAATTTG-----------C-CAACA--------------CGCAA--ATCA-----A-AC--AAACTCGCATTCGCACCCT--GCCAAATCAAAT-CG--CAT------TCGGTTC----TAAAACAAAAGCCTCCCGCGGCGGTTTAGCCAACCGCCAGTTGCCCTCA---GCGAACGGGAACSizeHit CountTotal NormTotal
No Reads
droEle1
CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT----------------------------------------T--CGTTATATCGT--------------------------ACTATA------------------------------------TATA---------------------------TCGTTCA--------TG-------------TTTGTATTACGTTCCT-TTGCTCGTGTT-G------------TGTTTT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTATACAACTAC-------------------------------------TACA------------AATCTT------------------------------AATCGCAAATCGCAAAAAAAAAACCAAAATCAATTTG-----------AAAAACA--------------TC---------------------A------ATTTGCACACT--GCA------AAT-TG--CAAAAAATGTGGGTTC----TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAATCGCCAGTTGCCCTCA---GCCAATGGAAACSizeHit CountTotal NormTotal
No Reads
droBia1
CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTTCAC--------GT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTTATACGTTC-T-ATGCTCG--TT-G------------TGTT-T--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATT--TGCCC---AA--------------CTAC---------------------------------------------AACAAAT-CGA---AA----------------------A----------------AA------------------TCAAAATCAATTTGAAAAAA-----AACCACA--------------CCAAA--ATCA-----AAAAT-AA------ATTCGCACCCT--GCC------AAT-CG--AAA------TCGGTTT----TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAATCGCCAGTTGCCCTCA---GCCAATGGAAACSizeHit CountTotal NormTotal
No Reads
droTak1
CTC---------G----AATTTATTTTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTT--C--------GTTCT-----------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTTATACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTAC---------------------------------------------AATAA--------------------------------------------------AA------------------TCAAAATCAATTTGAAAA---------AAACA--------------CCA-A--AA-A-----A-ATCAAA------ATACGCACCCT--GCC------AAT-CC-AAAA------TCGGTTT---CTAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAATCGCCAGTTGCCCTCA---GCCAATGGAAATSizeHit CountTotal NormTotal
No Reads
droEug1
CTC---------C----ACTTTA--TTT-------GA-T----CTCTCTGTGTGCCGT-CTC--------------------------TGT-TCTCGTT--C--------GT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTATTACGTTC-T-TTGCTCG--TT-G------------TGTTTCTTTGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CAAC---------------------------------------------AACAAAT-CGC---AA----------------------A-----------------A------------------ACAAAATCAATTTG-----------AAAAACA--------------CCA-AAAATCA-----A-ACC-AA------ACTCGCACCCT--GCC------AAT-CG--AAA------TC---------TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAATCGCCAGTTGCCCTCA---GCGAATGGG---SizeHit CountTotal NormTotal
No Reads
dm3
CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTT--C--------GT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTATTACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCCTCCAA--------------CTTC---------------------------------------------AACAAAT-CGA---AA----------------------A----------------AA------------------CCAAAATCAATTCGAAAA---------CAACA--------------CC-AA--ATCA-----A-ACC-AA------AATCGCACCCT--GCC------AAT-TG--AAA------TCGGTTT----TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAACCGCCAGTTGCCCTCA---GCAAATGGAAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................TTGCTCG--TT-G------------TGTTCT--TGTGA........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCT--GCC------AAT-TG--AAA------TCGGTTT----T...............................................................2312.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----TAAAACAAAAGCCTCCCG..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--AAA------TCGGTTT----TAAAACAAAAG.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGC....................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCCTCCCGTGGTGGTT......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTGCCCTCA---GCAAATG.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--------------CC-AA--ATCA-----A-ACC-AA------AATCGCACCC........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TTACGTTC-T-TTGCTCG--TT-G------------TGT..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCCCGTGGTGGTTTAG...................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-TG--AAA------TCGGTTT----TAAAA...........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCCCTCA---GCAAATGGA...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TG--AAA------TCGGTTT----TAAAACAA........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GA---AA----------------------A----------------AA------------------CCAAAATCAATTCGA...............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................G--TT-G------------TGTTCT--TGTGACTGCCACGCC------........................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................CCCTCCAA--------------CTTC---------------------------------------------AACAAAT-CGA---AA----------------------A----------------AA------------------C.............................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TGACTGCCACGCC------TACAC-GCTGCGCC..........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TGT-TCACGTT--C--------GT--------------------------------------------------------------------TATATCG------------------------TTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCTCCCGTGGTGGTTTA....................................2111.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CTCATTT-TGCCCTCCAG--------------GG........................................................................................................................................................................................................................................................................................................................19140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTT--C--------GT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTATTACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTTC---------------------------------------------AACAATT-CGA---AA----------------------A----------------AA------------------CCAAAATCAATTCG-----------AACAACA--------------CC-AA--ATCA-----A-ACC-AA------ATTCGCACCCT--GCC------AAT-TG--AAA------TCGGTTT----TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAACCGCCAGTTGCCCTCA---GCAAATGGAAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----TAAAACAAAAGCCTCCCGTGG...........................................2312.00200000000200000000
.......................................................................................................................................................................................................................................................................CG--TT-G------------TGTTCT--TGTGACTGC....................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------CC-AA--ATCA-----A-ACC-AA------ATT...............................................................................................................1811.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCCCGTGGTGGTTTAG...................................2011.00100000000001000000
droSec2
CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTT--C--------GT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGTATTACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTTC---------------------------------------------AACAAAT-CGA---AA----------------------A----------------AA------------------CCAAAATCAATTCG-----------AACAACA--------------CC-AA--ATCA-----A-ACC-AA------ATTCGCACCCT--GCC------AAT-TG--AAA------TCGGTTT----TAAAACAAAAGCCTCCCGTGGTGGTTTAGCCAACCGCCAGTTGCCCTCA---GCAAATGGAAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGTTTCACGTTA------TATCGT--------------------------------------------------------------------TATATCG------------------------TTGTTCA--------TG-------------TTTGCATTACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTTC---------------------------------------------AATAAAT-CGAACA------------------------A---CA----AAA-TCGAA------------------CCCAAATCAATTTG-----------AAAAACA--------------CCCAA--ATCA-----A-ACC-AA------ATTCGCACCCT--GCC------AAT-TG--AAA------TCGGTTT----TAAAACAAAAGCCTCCCGTGGCGGTTTAGCCAACCGCCAGTTGCCCTCA---GCAAATGGAAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CTC---------G----ATTTTA--TTT-------GA-T----CTCT--GTGTGCCGT-C----------------------------TGT-TCACGTTCTC--------GTTCTCGT--------------------TC--------------------------------------TTTATATCG------------------------TTGTTCA--------TG-------------TTTGCATTACGTTC-T-TTGCTCG--TT-G------------TGTTCT--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCC---AA--------------CTTC---------------------------------------------AACAAATTCGA---A-----------------------A----------------AA------------------CCAAAATCAATTCA-----------AAAAACA--------------CCAAA--ATCA-----A-ACC-AA------ATTCGCACCCT--GCC------AAT-TG--AAA------TCGGTTT----TTAAACAAAAGCCTCCCGTGGTGGTTTAGCCAACCGCCAGTTGCCCTCA---GCAAATGGAAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGTTTAGCCAACCG............................1911.0010000010
dp5
CG----------------------------------------------------------------------------------------T-TATCGTTACC--------GTTACCGT------------TACCGT--AA--TCGTTATCGTTCCTGTTTTGCTCATGTGTTTTTTCT--------TCCGTTTTG------TGTCGTTCATT--------------------------------------CG----C-TCGCTCG--TT-G------------TAATTTTGTCTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTTTTGCCA---AA--------------AAAA---------------------------------------------AAAAAAA-AAA---AA----------------------A----------------CACCAAAACCAAATA------CAAAATCAAATTC-----------A-----------------------AA--ATCACAACA---AA-AA------ATTCGCACTAC--GA-------AAT-CG-AAAA------TCGGTAT----CTAAACAAAAGCCTCCCGTGGTGGTCTAGCGAATCGCCAGCTGCCATCA---GCGAATGGAGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................A---AA--------------AAAA---------------------------------------------AAAAAAA-AAA---AA----------------------A----------------..................................................................................................................................................................................................................202015.20304030400000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAGCCTCCCGTGGTGG........................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCCCGTGGTGGTCTAGCGAATC.............................2511.0010100000000
......................................................................................................................................................................................................................................................................................................................................................AA--------------AAAA---------------------------------------------AAAAAAA-AAA---AA----------------------...................................................................................................................................................................................................................................18200.1020020000000
...............................................................................................................................................................................................................................................................................................................................................GCCA---AA--------------AAAA---------------------------------------------AAAAAAA-AAA---A..........................................................................................................................................................................................................................................................21190.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................A--------------AAAA---------------------------------------------AAAAAAA-AAA---AA----------------------A----------------CA................................................................................................................................................................................................................20200.0510010000000
droPer2
CTCTCTCTCTCGTTTCGAT-------CT-------GT-TGTTGCTAT--GTGTGCCGT-CTC---------------------------GT-TATCGTTACCGATCTCTCGT------TATCGTTACCGTTACCGT--AA--TCGTTATCGTTCCTGTTTTGCTCATGTGTTTTTTCT--------TCCGTTTTG------TGTCGTTCATT--------------------------------------CG----C-TCGCTCG--TT-G------------TAATTTTGTCTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTTTTGCAA---AA--------------AAAA---------------------------------------------AAAAAAA-A-AACA--AAAAAA------------------------------AAACACCAAAACCAAATA------CAAAATCAAATTC-----------A-----------------------AA--ATCACAACA---AA-AA------ATTCGCACTAC--GA-------AAT-CG-AAAA------TCGGTAT----CTAAACAAAAGCCTCCCGTGGTGGTCTAGCGAATCGCCAGCTGCCATCA---GCGAATGGAGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTG---------T----TTTGTT--TTT-------GT-T----G-TT--GTATGTTGT-C-----------------------------GT-TCATGTTTGT-ATTTCTTGTTTTTCT--------------------TC--------------------------------------CTTATGTTTTTGTTTTGATTCACGCTCGTTCGTTCGTT----------------------------------CGTTCGTTTGGTTGG--TT-GGTTAATTGGTATTATTGC--TGTGACTGCCACGCC------TACAC-GCTGCGCCCTCATTT-TGCCT---AA--------------TCGT---------------------------------------------ACCGCAT-CCA---CC----------------------A----------------AA------------------CTGT---------------------AACTGCA--------------CC-AA--ATT--------------------CTTCGATATC-----G------ATA-AACC--ATAA--------AT----ATAAACCAAAGCCTCCCGTGGTGGTTTAGCCCATCGGCAATTGCCCTCAAATGGCAACGGGACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................ATTATTGC--TGTGACTGCCACGCC------TA......................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.................................................................................................................................................................................................................................................................................................................................GCGCCCTCATTT-TGCCT---AA--------------TCGT---------------------------------------------A........................................................................................................................................................................................................................................................................2411.00101000
droVir3
CTC---------C-T--ATTT-CTCTTT-------GT-A----TATT--GTGCGC-GT-TTTTGCTGCCGCTCAATTTGATTGGTTTGTGA-TTTTGCT--C---------------------------------------------------------------------------------------------------------------TTCCACGTGTTCGTGTACGTTCCATA--TT-------TG----T-TTGTTCG--TTTG--------------A-TT--TAAAATTATCACGCC------CACACTGCTGCGCCTTCTCAC-TACCA---TA-----TACTACACAA----------CAAAATTTATTAAATATCTGATAAACTGCCAAAAATGCAACA---------------------------------------------------AA------------------AAAAAATAAATAAA-----------TAAAAAA--------TCTATAA---------A-----A--AA-AA----------TCATCG------------AAT-TTAA--A--------AATAA----CTAAACAAAAGCCTCCCGTGGTGGTCTAGCCAATCGCCAGCTGCCCTCG---ACGAACGTATCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................TTGGTTTGTGA-TTTTGCT--C---------------------------------------------------------------------------------------------------------------TT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000100000000000000000110000000000000000000000000000000000000
...........................................TATT--GTGCGC-GT-TTTTGCTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000000000000000000000012000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAGCCTCCCGTGGTGGT.......................................2113.003000000000000000000000000101100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TT--TAAAATTATCACGCC------CACA....................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000100100000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGTGGTCTAGCCAATCG............................2112.002000000000000000000000001010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................CACACTGCTGCGCCTTCTCAC-..................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000002000000000000000000000000
...................................................................................................................................................................................................................................GTACGTTCCATA--TT-------TG----T-TTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000002000000000000000000000000000000000000
.............................................................................................TTTGCT--C---------------------------------------------------------------------------------------------------------------TTCCACGTGTTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000110000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAGCCTCCCGTGGTGG........................................2112.002000000000000000000000000002000000000000000000000000000000000000
.................................................................................TGGTTTGTGA-TTTTGCT--C---------------------------------------------------------------------------------------------------------------TTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000020000000000000000000000000000000000
...............................................................................ATTGGTTTGTGA-TTTTGCT--C---------------------------------------------------------------------------------------------------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000010000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGTGGTCTAGCCAATCGCTT.........................2311.001000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................ATTAAATATCTGATAAACTGC..................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--A--------AATAA----CTAAACAAAAGCCT..................................................2111.001000000000000000000000000100000000000000000000000000000000000000
...................................................................................GTTTGTGA-TTTTGCT--C---------------------------------------------------------------------------------------------------------------TTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TCCACGTGTTCGTGTACGTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
................................................................CTGCCGCTCAATTTGATTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
......................................A----TATT--GTGCGC-GT-TTTTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................GCC------CACACTGCTGCGCCT.........................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................TGCT--C---------------------------------------------------------------------------------------------------------------TTCCACGTGTTCGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................ATA--TT-------TG----T-TTGTTCG--TTTG--------------A-T................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................TTGTGA-TTTTGCT--C---------------------------------------------------------------------------------------------------------------TTCCACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................................................................C------CACACTGCTGCGCCTTCTCA....................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ACTGCTGCGCCTTCTCAC-TAC...............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...........................T-------GT-A----TATT--GTGCGC-GT-TTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAGCCAATCGCCAGCTGC....................2111.001000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAA----CTAAACAAAAGCCTCC................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.........................................................................AATTTGATTGGTTTGTGA-TTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
..............................................................................................TTGCT--C---------------------------------------------------------------------------------------------------------------TTCCACGTGTTCGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AAATATCTGATAAACTGCCAA...............................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCCCTCG---ACGAACG.....1911.001000000000000000000000000100000000000000000000000000000000000000
.................................................................................................CT--C---------------------------------------------------------------------------------------------------------------TTCCACGTGTTCGTGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
..............................................................................................TTGCT--C---------------------------------------------------------------------------------------------------------------TTCCACGTGTTCGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
...................................GT-A----TATT--GTGCGC-GT-TTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TGCGCCTTCTCAC-TACCA---TA-----T..................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................TGA-TTTTGCT--C---------------------------------------------------------------------------------------------------------------TTCCACGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCCTCCCGTGGTGGTCT.....................................2111.001000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................................................CTGCTGCGCCTTCTCAC-TACC..............................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCTGCCCTCG---ACGAACGT....2111.001000000000000000000000000000000010000000000000000000000000000000
..................TTT-CTCTTT-------GT-A----TATT--GTGCGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000001000000000000000000000000
......................................................................................TGTGA-TTTTGCT--C---------------------------------------------------------------------------------------------------------------TTCCACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATAAACTGCCAAAAATGCAAC......................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TATCACGCC------CACACTGCTGCG............................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CG--TTTG--------------A-TT--TAAAATTATCA..................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................TTTGTGA-TTTTGCT--C---------------------------------------------------------------------------------------------------------------TTCCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TA--TT-------TG----T-TTGTTCG--TTTG--------------A-TT--.............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
............................................................................TTGATTGGTTTGTGA-TTTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAAAGCCTCCCGTGGTGG........................................2211.001000000000000000000000000100000000000000000000000000000000000000
..............................................................................GATTGGTTTGTGA-TTTTGCT--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................TACGTTCCATA--TT-------TG----T-TTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGTGGTCTAGCCAATCG............................2011.001000000001000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TTCCATA--TT-------TG----T-TTGTTCG--TT...................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CTAAACAAAAGCCTCCCGT.............................................2011.001000000000000000000000000100000000000000000000000000000000000000
.................................................GTGCGC-GT-TTTTGCTGCCGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
.............................................TT--GTGCGC-GT-TTTTGCTGCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACAAAAGCCTCCCGTGG...........................................2011.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCCTCCCGTGGTGGTCTT....................................2211.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TTATCACGCC------CACACTGCTGC.............................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................TTT-CTCTTT-------GT-A----TATT--GTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GCTGCGCCTTCTCAC-TACC..............................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGTCTAGCCAATCGC...........................2011.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TT-------TG----T-TTGTTCG--TTTG--------------A-TT--T............................................................................................................................................................................................................................................................................................................................................................................................2020.501000000100000000000000000000000000000000000000000000000000000000
droMoj3
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAT-AAA---AA----------------------A----------------TA------------------TTGCAATA--------------------------------------C---------A-----A--AA-AA------ACTCGCATCG------------AAT-CACA--AACA--------AT----CTAAACAAAAGCCTCCCGGGGTGGTCTAGCCAATCGCCAGCTGCCATCC---TCGAACGTGCCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATG---------CATA-ATTTTA--TTTGTGTTTTGCTT----ATCTGCGTGTGCTTT-C----------------------------CAT-ATTTGTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGTCG--TTTG--------------A-TT--TATATTTCGCACGCC------CACACCGCTGCGCCTCCACAC----CC---ACCGCTATTCTCCCAAAAATAATTTT---------------------------------------AAAA------A----A----------------------AAATCA----ATAACAACA------------------ACGAAATGAATTGC-----------AACAAAATA------------TCA-AAAATTATAACAA-CAA-AA------ATTCGAAACG------------AAT-A-----A------CAAACAT----CTAAACAAAAGCCTCCCGTGGTGGTCTAGCTAATCGCCAGCTGCCCTCG---TCGAACGTGTCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:18 AM