ID:

dan_2317

 Coordinate:

scaffold_13337:481024-481174 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_9603:4]; CDS [Dana\GF24919-cds]; intron [Dana\GF24919-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGCAGCTGGGTTTCCCCAAAGCGCCCATATTTGCATTATGCAATCGAACCCCTTCACGCACACACCAACAACAGCAATAGCAACAGCAACAGCGACACCAGCAACACAAACCACAACAAGCCGCATTCATGTGCTTCAAAGTCTTACTATATCAACACGCATTTTCCACTCTCAAAAAACACAAACACCCAACTCATCAGCCAGCAGCAGCAGCAGCAGTCGAGGAAAAGCAGACATCGTATCTGCCGCT
**************************************************.............................(((.(((......(((...........................))).....)))))).................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 V105
male body		 V039
embryo
 M044
female body
 V055
head
................................................................................................................................................TTACTAGATCAACACTCATT....................................................................................... 20 2 2 6.50 13 13 0 0 0 0 0
................................................................................................................................................TTACTATATCCACACTCATT....................................................................................... 20 2 3 2.67 8 8 0 0 0 0 0
.....................................................................................................................................................................................................................GCAGCAGTCGAGGAAAAGCA.................. 20 0 1 2.00 2 0 2 0 0 0 0
................................................................................................................................................TTACTAGATCCACACTCATTTT..................................................................................... 22 3 4 2.00 8 8 0 0 0 0 0
..................................................................................................................................................................................................................GCAGCAGCAGTCGAGGAAAAGCAGACA.............. 27 0 1 2.00 2 0 2 0 0 0 0
...........................................................................................................................................................................CGCAAAAAACACAAACACC............................................................. 19 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................GCAGCAGTCGAGGAAAAGCAGACATC............ 26 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................AGCAGCAGTCGAGGAAAAGCA.................. 21 0 1 1.00 1 0 0 0 0 1 0
....................................................................................................................................................................................................................CGCAGCAGTCGAGGAAAAGCA.................. 21 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................TTACTATATCCACACTCATTT...................................................................................... 21 2 2 1.00 2 1 0 0 1 0 0
..............................................................................................................................................................................................................AGCAGCAGCAGCAGTCGAGGAAAAGCA.................. 27 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................................................GCAGCAGTCGAGGAAAAGC................... 19 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................ATGTGCTTCATACTATTACTA..................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0
..................................................................................................................................................................................................................GCAGCAGCAGTCGAGGAAAAGC................... 22 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................GCAGCAGTCGAGGAAAAGCAGA................ 22 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................TTACTAGATCCACACGCATT....................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................................................CCTCAGCCAGCAGCAGCAGCAGCAGT.............................. 26 1 3 0.33 1 0 1 0 0 0 0
.................................................................................................................................................................................................................AGCAGCAGCAGACGAGGAA....................... 19 1 3 0.33 1 0 0 0 1 0 0
................................................................................................................................................................................AAAACCCAAACACCCAACCCA...................................................... 21 2 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................................AAAAACACAAACACCCGACAC....................................................... 21 2 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................................ATCTAAAAAAACACAAACACCCC........................................................... 23 3 4 0.25 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................GCCGTAGTCGATGAAAAGCAG................. 21 3 4 0.25 1 0 0 1 0 0 0
................................................................................................................................................TGACTAGATCAACACTCATTTT..................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0
.............................................................................................................................................................................AAAAAAACACAAACACCCAA.......................................................... 20 1 5 0.20 1 1 0 0 0 0 0
.............................................................................................................................................................................CAAAAAACACAACAACCCAAC......................................................... 21 2 5 0.20 1 1 0 0 0 0 0
................................................................................................................................................TTACTATATCCACACTCAT........................................................................................ 19 2 6 0.17 1 1 0 0 0 0 0
................................................................................................................................................TGACTATATCAACACTCGTT....................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1
................................................................................................................................................................................AAAACACAAACACCCAAACCA...................................................... 21 2 7 0.14 1 1 0 0 0 0 0
..................................................................................................................................TGTGCTTCATACTCATACTA..................................................................................................... 20 3 8 0.13 1 0 0 0 1 0 0
................................................................................................................................................TTGCTATATCCACACTCATTT...................................................................................... 21 3 8 0.13 1 0 1 0 0 0 0
......................................................................................GCAACAGAGACACGAGCCACA................................................................................................................................................ 21 3 8 0.13 1 1 0 0 0 0 0
................................................................................................................................................TTACTAGATCAACACTCAT........................................................................................ 19 2 8 0.13 1 1 0 0 0 0 0
..............................................................................................................................................................................AAAAAACCCAAACTCCCAAC......................................................... 20 2 9 0.11 1 1 0 0 0 0 0
........................................................................................................ACACAAACCATAAAAAGCC................................................................................................................................ 19 2 10 0.10 1 1 0 0 0 0 0
...........................................................................................................................................................................................TACCAACTCATCAGCCAG.............................................. 18 2 10 0.10 1 0 0 0 0 0 1
...........................................................................................................................................AACTCTTACTCGATCAACAC............................................................................................ 20 3 10 0.10 1 1 0 0 0 0 0
..................................................................AAACAACAGCAATAGCAACAGCAAATG.............................................................................................................................................................. 27 3 10 0.10 1 1 0 0 0 0 0
................................................................................................................................................................................GAAACACAAACACCCAACAC....................................................... 20 2 10 0.10 1 1 0 0 0 0 0
................................................................................................................................................TTACTATATCCACACCCCTT....................................................................................... 20 3 11 0.09 1 0 0 0 1 0 0
.....................................................................................................................................................................................ACAAACACCCAACCCACCA................................................... 19 2 12 0.08 1 0 0 0 1 0 0
.................................................................................................................................................................................AAACACAAACACCCAAACCA...................................................... 20 2 13 0.08 1 1 0 0 0 0 0
.................................................................................................................................................................................AAAAACAAACACCCAACCCA...................................................... 20 2 13 0.08 1 1 0 0 0 0 0
................................................................................................................................................TTACTAGATCAACACTCATC....................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0
................................................................................................................................................TTACTATATCCACACTCTTT....................................................................................... 20 3 15 0.07 1 0 0 0 1 0 0
.................................................................................................................................................................................AAACACGAACACCCAACC........................................................ 18 2 15 0.07 1 1 0 0 0 0 0
.............................................................................................................................................................................CAAAATACCCAAACACCCA........................................................... 19 2 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................AACAAAAACACCCAACCC....................................................... 18 2 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................................AGCAGCAGCAGCAGCA................................ 16 0 20 0.05 1 0 0 0 0 0 1
.............................................................................................................................................................................CAAAAAAAACTAACACCCCAC......................................................... 21 3 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................CAAAAAAAACAAAAACGCAACTC....................................................... 23 3 20 0.05 1 1 0 0 0 0 0
.....................................................TTAACGCAGACACCAAGAA................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................................................CAGCAGTCGCGGTAAAACA.................. 19 3 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................ATCAAAAAAAACAAACACCC............................................................ 20 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AACGTCGACCCAAAGGGGTTTCGCGGGTATAAACGTAATACGTTAGCTTGGGGAAGTGCGTGTGTGGTTGTTGTCGTTATCGTTGTCGTTGTCGCTGTGGTCGTTGTGTTTGGTGTTGTTCGGCGTAAGTACACGAAGTTTCAGAATGATATAGTTGTGCGTAAAAGGTGAGAGTTTTTTGTGTTTGTGGGTTGAGTAGTCGGTCGTCGTCGTCGTCGTCAGCTCCTTTTCGTCTGTAGCATAGACGGCGA
**************************************************.............................(((.(((......(((...........................))).....)))))).................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 M044
female body
 V105
male body		 M058
embryo
 V106
head
...............................................................................................TGTGGTCGATTGGTTTGGTGTT...................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
..CGTCGACCCAAAGGGGTAAG..................................................................................................................................................................................................................................... 20 3 12 0.25 3 1 2 0 0 0
....................................................................................................................................................................................................................................TTCGTCTATGGGATAGACGGC.. 21 3 4 0.25 1 1 0 0 0 0
..................TTTTGCTGGTATGAACGTAA..................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0
.................................................TAGGAAGTGCGTGTGTTGTT...................................................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0
.....................................................................................................................................................................................................................................TCGTCCGTAGCAAAGACGGA.. 20 3 11 0.09 1 1 0 0 0 0
........................GGGTATAGATGTAATACGATAG............................................................................................................................................................................................................. 22 3 12 0.08 1 1 0 0 0 0
....................................................................................................................................................................................GTGTTTGCGGCTTGAGGAGT................................................... 20 3 12 0.08 1 1 0 0 0 0
.............................................................................................GCGGTGGTCGTTGTGTGGGGT......................................................................................................................................... 21 3 16 0.06 1 0 0 0 1 0
....................................AATACGTTAGCTAGAGGCA.................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:480974-481224 + dan_2317 TTGCAGC---TGG--------------------G--T-TT-----C-CCC----AAAGC--------GC-------CC--ATATTTG------CATT-ATGCAATCGAAC--CCCTTCACGCA-----CACA---------------CCAA-----C--------------AACAGCAATAGCAACAGCAA---CAGCGACAC------CAGCAACACAAACCACAA--CAAGCCGC------ATT--CATGTGCTTCAAAGTCTTACTA---TATCAA-------------------------CACGCATTTTCCACTCTCAA-A--A-AACACAA------------------------------------------------------------------ACA--C----------C-CAACTCATCAGCCAGCA--G----------------------CAG----CAGCAGCAGT---CGAGGAA-------AAGCAG--ACAT------CGTATCTGCCGCT
droBip1 scf7180000395155:278189-278446 - TTGCACC---TGG--------------------G--T-TTCC---C-CTT----AAGCT--------TC-------CC--ATATTTG------CATT-ATGCAATCTCGAACCCCTTCACGCT-----CACA---------------CAC------C------ACC--AACATCAGCTACAGCAACACCAG---CAACAGAAA------------------CCACAA--CAAGCTGC------ATT--CATATGCTTTAAAGTCTTACTA---TATCAA-------------------------CACGCATTTTCCA-TCCTCA-ACCA-AACACAA------------------------------------------------------------------ACA--C----------C-CAACTCATCAGCCACCA--CCA----------------GCAGCAT----TAGCAGCAGTCTCCGAAGAA-------AAGCAG--ACAT------CGTATCTGCCGCT
droKik1 scf7180000302441:1307496-1307714 - TTTGAGATCTTGAGT---CTTAAGTT---TTGAGTCT-TTTTCTTC-C----------------------------CC------TTG--TGATTATT-ATGCAATCGAAA--CCTTTCACGAA-A----------------------------------------------A--------ACAAACAGCA-----------AA------------------CCACAACACAAGCCGC------AAT--CATATGCTTTAATGTCTTT--ACTATATCAACAAAACAAAATCAAACAAAAAACTCCACGCATT---------------------ACAA-----------------------------------------------------------------------AAA--------------------------A--ATA---------ACAGCCAG---CAG----CAGCCAAAGA---GGAGGAA-------AAGCTG--GCA--------------------
droFic1 scf7180000454105:769289-769560 + TTGGAT----TGAGTTGGCCTGAGCTGAGCTGAG--T-TTTT---C-TCC----CAGAC--------CC-------CCTTATATTTG------CATT-ATGCAATCGACAA-CCGTTCACGCA-----CACA---------------AAAA-----G-----------------AAACGACACAGCAGCAG---CAGCAGCAA------------------CCACAA--CAAGCGGC------AAT--CATAAGCTTTAATGTCTTACTA---AAACAA------------------CAAACTCCACGCATTTTACCCTCTTGA-A--ATCACACAA----------------------------------------------------------------AACAA--AAAA-ACCAAAC-CCAAACATCAAAATGCA--ACA----------------A---CAGCCAACAGCCAAAGC---CGAGGAA-------AAGCTG--GCA--------------------
droEle1 scf7180000491249:2976395-2976659 - GTGAAGT---TGAGT-----TAA-----GTTGAG--T-TTTT---C-TCG----CAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCTCAAA-CCATTCACGCA-----CACA---------------CAA------A-----------------AATAACAACAACAGCAAAAGCAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--TATAAGCTTTAATGTCTTACTA---AAACAA------------------CAAACTTCACGCATTTTACCCTCTTAA-A--A-AATATAA-------------------------------------------------------------------------AAAAAAAAACACAAAACATCAAAATGCAACACAACAGCCACA-------G---CGAA---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------
droRho1 scf7180000776529:347857-348072 + TCGCGAT---TGGA-------------------G--C-C----------------AATG--------CG-------CG--GTATTTCCATA---ATC-ATTGAATCGCCAG-AAGTG-----------------------------------GCCAC---AGCC--AC---A------GCAGCAACAGCAA---CAGCAACGGCAACACAAGTAGCAGCAACTGCCA--AGAGCAAC------AG------CAACACTGAAATGTCGCTC---AAGTCC------------------CAGGCT---GGCATGTTGCTGGC--------A-TTTGG------------------------------------------------------------------------------------------------CGACACA--GCA----------------G---CAA----CAACCAAAGA---TAAT-----TTGG-AAACTA--GTT------------------AC
droBia1 scf7180000302428:9207469-9207704 + TTGGAGC---AGA--------------------G--T-TTTT---C-TCC--CATAGAC--------CC-------CC--ATATTTG------CATT-ATGCAATCCAAAAACCATTCACGCA-----CACA---------------CCAA-----A-----------AACAACAGCAACAGCAACATCAA---CAGCAGCAA------------------CCACAA-ACAAGCAGC------AAT--CATAAGCTTTAATGTCTTACTA---AAACAA------------------CAAACTCCACGCACTTTACCCTCTTAA-A--A-AATACAA---------------------------------------------------------------CAAAAT--A----------C-G---------------AAAACA----------------A---CAGC---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------
droTak1 scf7180000415857:189755-189993 + TTGGAGC---TGC--------------------G--T-TTTT---C-TCC----CAGGCCCCCCCCCTC-------CT--ATATTTG------CATT-ATGCAATCCCAAA-CCATTCACGCA-----CACA---------------CCAA-----A--------------AACAACAACAGCCACAGCAG---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTTACTA---AAACAA------------------CAAAATCCACGCATTTTACCCTCTTAA-A--A-AATACAAAAA-----------------------------------------------------------------------------------------CAAAATACAAAACA----------------A---CAGC---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------
droEug1 scf7180000409466:172255-172514 + TTGGAGC---TGA--------------------C--T-TTTCCT---TCC----CAGAC--------CC-------CC--ATATTTG------CATT-ATGCAATCCCAAACCCATTCACGCA-----CACA---------------CCAAAACCAACACAGCA--CT---AACAGCAGCAGCAACAGCAA---CAGCAGCGA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTTACTA---AAACAA------------------CAAACTCCACGCATTTTACCCTCTTAA-A--A-AAC----------------------------------------------------------------CAACAACAC--AAAA-------C-CAAAACATCAAAATGCA--ACA----------------G---CAGC---CAGCCAAAGT---CGTGGAA-------AAGCTG--GCA--------------------
dm3 chr3L:2442244-2442465 + TTGGAGC---CGA--------------------GTTTTTTTT---C-CCC----CAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCCAAAA-CC---------AA----------------------------------------------A------ACAACAACAGCAA---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTCACTA---AAAC-------------------------TCCACGCATTTTACCCTCCTAA-A--A-AATAA-----------------------------------------------------------TAACAACAACAAAAAAAA-----------ACACATCAAAATGCT--ACA----------------G---CAGA---GAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------
droSim2 3l:2339009-2339219 + TTGGAGC---CGA--------------------G--T-TTTT---C-CCC----CAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCCAAAA-CC---------AA-------------------------------------------------------AACAACAGCAA---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTCACTA---AAAC-------------------------TCCACGCATTTTACCCTCCTAA-A--A-AATGA--------------------------------------------------------------CAACAACAA--AAAA-----------ACACATCAAAATGCT--ACA----------------G---CAGA---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------
droSec2 scaffold_2:2473195-2473402 + TTGGAGC---CGA--------------------G--T-TTTT---C-CCC----CAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCCAAAA-CC---------AA-------------------------------------------------------AACAACAGCAA---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTCACTA---AAAC-------------------------TCCACGCATTTTACCCTCCTAA-A--A-AATAA-----------------------------------------------------------------CAACAA--AAAA-----------ACACATCAAAATGCT--ACA----------------G---CAGA---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------
droYak3 3L:9492182-9492418 - dya_752 TTGGAGC---TGC--------------------T--T-TTTT-T-C-CCCCCCAAAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCCAAAA-CC---------AA------A---------------ACAAAACCAA--------------AACAGCACCAACAACAGCAA---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTCACTA---AAACAAC---------------AACAAACTCCACGCATTTTACCCTCCTAA-A--A-AATACAA-------------------------------------------------------------------------AA-----------ATACATCGAAATGCA--ACA----------------G---CAGC---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------
droEre2 scaffold_4784:2458208-2458431 + der_699 TTGGAGC---TGA--------------------G--T-TTTT---C-CCC----CAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCCAAAA-CC---------AA--------------------------AACCAA--------------AACAACAGCAACAACAGCAA---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTCACTA---AAACAA------------------CAAACTCCACGCATTTTACCCTCCTAAAA--A-AATACAA-------------------------------------------------------------------------AA-----------ATACATCAAAATGCT---CA----------------G---CAGC---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------
dp5 XL_group1e:9035951-9036163 + GCAG--C---TGC--------------------A--------------------ATAAT--------GC------ACA--TTTCTGCTGAGGTCA---GTTCGACC------ACCTCAAATCAAA---TACAGC-----------------------------A--GC---AACAGCAACAGCAACAACAA---CAGCAGCAG------CAGCAG------CACCAA--CA-GCTTCACCAACAG------TTGCA-------CCAACAA---CACCAA-------------------------------------------------------------------------------------------------------------------------CAGCAA--ACGA-------C-TCCAACAGCAACG-ACC--ACA---------ACGGGCGG---CAG----CACCACGAAG---CGGCGTAATGCAG-AGTC--------------------CTCCTCC
droPer2 scaffold_33:432649-432848 + --------------------------------------------------------------------------------------G------CATT-ATGCAATCGAAAA-----------------TAC----------------------------------------AACAGCAACAACAACAACAA---CAACAACAA------------------CAACAA--CAACAAGA------AATCCCACATGCTTTAATGTCT--------------------------------------CCACGCATT-TACCCCCTCAA-A--A-AAAACACATGCAACATGCAACATGCAGCA-------------------------------------GCAGCAGCAGCAACA------------------------ACA--GCA------ACAACAAGCAG---CAG----CCGCAACAGC---AGGGGAA-------AAGCTC--CCA------------------CC
droWil2 scf2_1100000004515:2943635-2943846 + CAGAAAG---AGG--------------------A--A-TT-----C-CTC----AAATC--------GCCAGTACCCA--GTAACGG----ATCACC-AGGCAATCAACAG-CA---------AC----------------------------------------------A---GCAGCAACAGCAGCAA---CAGCAGCAA---CACCAGCAACAACAACAA---------CA------------------ACATTTCTTTCCTACAA---CTTCAA-------------------------------------------------C-AGTACACAATCAATTTCCAGCA--CAACCGGCGCTACCGCCACGAGGA----------------CGCCAACAGCA------------------------------GCA--ACT------GCA-------G---CAAG---CAGC---AAT------------------------------------------------
droVir3 scaffold_13246:1792488-1792701 - TATCGC-----GAGT------------------G--T-TAGT---G-CCA----ATAAC--AACAACAA-------CA--ATGTGAA------C---------------------TTAACGAA-----TGCAACTGCAACAGCAATAACA--ACAAC--------------AACAGCAACAACAGCAGCTA---CAGCTGCAA------------------CAGCAA--C-AGCAGC------GG------AAGCA-------------------ACGA------------------CAAC-ATCGCTCGGCT--------TGA-G--C-GATGAAC----------------------------------------------------------------AGCAA--CAAT-----------CGACATCGGC----A--GCA----------------G---CAG----CAGCAGCAGC---AGCAGCA-------A--CTG-----------------TTGCTGCC
droMoj3 scaffold_6473:5472848-5473118 + CTGCAGC---AGC--------------------T--C-C--------GCA----AATGC--------AT-------CC--ACATGCG------CATGTAGGTGGCCCACCG-C-CTCCACACA-----TGCCGCCA-----------CAC------A-----------------TGGCGCCCCAGCAGCAACAGCAGCAGCCG---CCTCAGCAG------CCACCA-CCTGGCGGC------ATG--CCTGGTCTGCCA-------------C--------------------------------CGCCGTTGCCCCACATGG-G--C-TATGCCA-------------ACTATGGTGGACCCGGTCCCGGCCAGCACTCGCACACGCACTACTACCAGCCGCAG---------------------------------------------------------TAT----GGACCGCACT---CGAG--A-------CCGCAG--CCCTACTACACGCACCTACCGCC
droGri2 scaffold_15110:6299479-6299708 - CTGCCGC---CGC--------------------C--C-CCGT---CGCCG-CCAACGTC--------GC-------CC--ACGATCA------C------GC------------CTCCAATCACGCCCTGCAACCTCATCAGCAATAGCA--ACAAC--------------AACAACAATAGCAACAGCAA---CAGCAGCAACGGCAATAGCAACAACAACAACCA--ACAACAAC------AC------A--------------ATCA---TAACAA-------------------------------------------------------------------------------------------------------------------CATCAACAACAGTAACAA-----------CCACATTGACACGCCCAACA----------------A---CAGT---TTGCT---GC---TGAGCCC---CACTAAGCAGATGCT--------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTGCAGC---TGG--------------------G--T-TT-----C-CCC----AAAGC--------GC-------CC--ATATTTG------CATT-ATGCAATCGAAC--CCCTTCACGCA-----CACA---------------CCAA-----C--------------AACAGCAATAGCAACAGCAA---CAGCGACAC------CAGCAACACAAACCACAA--CAAGCCGC------ATT--CATGTGCTTCAAAGTCTTACTA---TATCAA-------------------------CACGCATTTTCCACTCTCAA-A--A-AACACAA------------------------------------------------------------------ACA--C----------C-CAACTCATCAGCCAGCA--G----------------------CAG----CAGCAGCAGT---CGAGGAA-------AAGCAG--ACAT------CGTATCTGCCGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGT---CGAGGAA-------AAGCA..........................2012.002000002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----CAGCAGCAGT---CGAGGAA-------AAGCAG--ACA....................2712.002000002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGT---CGAGGAA-------AAGCAG--ACAT------C............2611.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGT---CGAGGAA-------AAGCA..........................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A--G----------------------CAG----CAGCAGCAGT---CGAGGAA-------AAGCA..........................2711.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGT---CGAGGAA-------AAGC...........................1911.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----CAGCAGCAGT---CGAGGAA-------AAGC...........................2211.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGT---CGAGGAA-------AAGCAG--A......................2211.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA--G----------------------CAG----CAGCAGCA..................................................16200.051000100
droBip1
TTGCACC---TGG--------------------G--T-TTCC---C-CTT----AAGCT--------TC-------CC--ATATTTG------CATT-ATGCAATCTCGAACCCCTTCACGCT-----CACA---------------CAC------C------ACC--AACATCAGCTACAGCAACACCAG---CAACAGAAA------------------CCACAA--CAAGCTGC------ATT--CATATGCTTTAAAGTCTTACTA---TATCAA-------------------------CACGCATTTTCCA-TCCTCA-ACCA-AACACAA------------------------------------------------------------------ACA--C----------C-CAACTCATCAGCCACCA--CCA----------------GCAGCAT----TAGCAGCAGTCTCCGAAGAA-------AAGCAG--ACAT------CGTATCTGCCGCTSizeHit CountTotal NormTotal
No Reads
droKik1
TTTGAGATCTTGAGT---CTTAAGTT---TTGAGTCT-TTTTCTTC-C----------------------------CC------TTG--TGATTATT-ATGCAATCGAAA--CCTTTCACGAA-A----------------------------------------------A--------ACAAACAGCA-----------AA------------------CCACAACACAAGCCGC------AAT--CATATGCTTTAATGTCTTT--ACTATATCAACAAAACAAAATCAAACAAAAAACTCCACGCATT---------------------ACAA-----------------------------------------------------------------------AAA--------------------------A--ATA---------ACAGCCAG---CAG----CAGCCAAAGA---GGAGGAA-------AAGCTG--GCA--------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTGGAT----TGAGTTGGCCTGAGCTGAGCTGAG--T-TTTT---C-TCC----CAGAC--------CC-------CCTTATATTTG------CATT-ATGCAATCGACAA-CCGTTCACGCA-----CACA---------------AAAA-----G-----------------AAACGACACAGCAGCAG---CAGCAGCAA------------------CCACAA--CAAGCGGC------AAT--CATAAGCTTTAATGTCTTACTA---AAACAA------------------CAAACTCCACGCATTTTACCCTCTTGA-A--ATCACACAA----------------------------------------------------------------AACAA--AAAA-ACCAAAC-CCAAACATCAAAATGCA--ACA----------------A---CAGCCAACAGCCAAAGC---CGAGGAA-------AAGCTG--GCA--------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTGAAGT---TGAGT-----TAA-----GTTGAG--T-TTTT---C-TCG----CAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCTCAAA-CCATTCACGCA-----CACA---------------CAA------A-----------------AATAACAACAACAGCAAAAGCAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--TATAAGCTTTAATGTCTTACTA---AAACAA------------------CAAACTTCACGCATTTTACCCTCTTAA-A--A-AATATAA-------------------------------------------------------------------------AAAAAAAAACACAAAACATCAAAATGCAACACAACAGCCACA-------G---CGAA---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCGCGAT---TGGA-------------------G--C-C----------------AATG--------CG-------CG--GTATTTCCATA---ATC-ATTGAATCGCCAG-AAGTG-----------------------------------GCCAC---AGCC--AC---A------GCAGCAACAGCAA---CAGCAACGGCAACACAAGTAGCAGCAACTGCCA--AGAGCAAC------AG------CAACACTGAAATGTCGCTC---AAGTCC------------------CAGGCT---GGCATGTTGCTGGC--------A-TTTGG------------------------------------------------------------------------------------------------CGACACA--GCA----------------G---CAA----CAACCAAAGA---TAAT-----TTGG-AAACTA--GTT------------------ACSizeHit CountTotal NormTotal
No Reads
droBia1
TTGGAGC---AGA--------------------G--T-TTTT---C-TCC--CATAGAC--------CC-------CC--ATATTTG------CATT-ATGCAATCCAAAAACCATTCACGCA-----CACA---------------CCAA-----A-----------AACAACAGCAACAGCAACATCAA---CAGCAGCAA------------------CCACAA-ACAAGCAGC------AAT--CATAAGCTTTAATGTCTTACTA---AAACAA------------------CAAACTCCACGCACTTTACCCTCTTAA-A--A-AATACAA---------------------------------------------------------------CAAAAT--A----------C-G---------------AAAACA----------------A---CAGC---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTGGAGC---TGC--------------------G--T-TTTT---C-TCC----CAGGCCCCCCCCCTC-------CT--ATATTTG------CATT-ATGCAATCCCAAA-CCATTCACGCA-----CACA---------------CCAA-----A--------------AACAACAACAGCCACAGCAG---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTTACTA---AAACAA------------------CAAAATCCACGCATTTTACCCTCTTAA-A--A-AATACAAAAA-----------------------------------------------------------------------------------------CAAAATACAAAACA----------------A---CAGC---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TTGGAGC---TGA--------------------C--T-TTTCCT---TCC----CAGAC--------CC-------CC--ATATTTG------CATT-ATGCAATCCCAAACCCATTCACGCA-----CACA---------------CCAAAACCAACACAGCA--CT---AACAGCAGCAGCAACAGCAA---CAGCAGCGA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTTACTA---AAACAA------------------CAAACTCCACGCATTTTACCCTCTTAA-A--A-AAC----------------------------------------------------------------CAACAACAC--AAAA-------C-CAAAACATCAAAATGCA--ACA----------------G---CAGC---CAGCCAAAGT---CGTGGAA-------AAGCTG--GCA--------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTGGAGC---CGA--------------------GTTTTTTTT---C-CCC----CAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCCAAAA-CC---------AA----------------------------------------------A------ACAACAACAGCAA---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTCACTA---AAAC-------------------------TCCACGCATTTTACCCTCCTAA-A--A-AATAA-----------------------------------------------------------TAACAACAACAAAAAAAA-----------ACACATCAAAATGCT--ACA----------------G---CAGA---GAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGT---CGAGGAA-------AAGCTG--GC.....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT---CGAGGAA-------AAGCTG--GCA--------------------2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CACGCATTTTACCCTCCTAA-A--A-AAA...................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACACATCAAAATGCT--ACA----------------.....................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----------------G---CAGA---GAGCCAAAGT---CGAG.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................................ACAGCAA---CAGCAGCAA------------------CCA................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ACA----------------G---CAGA---GAGCCAAAGT---CG...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAAGT---CGAGGAA-------AAGCT..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGT---CGAGGAA-------AAGCTG--.......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................GCATTTTACCCTCCTAA-A--A-AA....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TG------CATT-ATGCAATCCAAAA-CC---------AA----------------------------------------------A------ACAAC.........................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CCACGCATTTTACCCTCCTAA-A--A-AA....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGT---CGAGGAA-------AAGCTG--G......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGT---CGAGGAA-------AAGCTG--GC.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTACCCTCCTAA-A--A-AATAA-----------------------------------------------------------T.....................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................ATT-ATGCAATCCAAAA-CC---------AA----------------------------------------------A------ACAAC.........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ACAACAGCAA---CAGCAGCAA------------------C..................................................................................................................................................................................................................................................................................................................20170.4170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CAACAGCAA---CAGCAGCAA------------------C..................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................A------ACAACAACAGCAA---CAGCAG........................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACAACAACAGCAA---CAGCAGCAA------------------...................................................................................................................................................................................................................................................................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...........................................................................................................................................................................A------ACAACAACAGCAA---CAGCAGCA......................................................................................................................................................................................................................................................................................................................................22190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................AACAACAGCAA---CAGCAGCAA------------------...................................................................................................................................................................................................................................................................................................................20190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................CAACAACAGCAA---CAGCAGC.......................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
TTGGAGC---CGA--------------------G--T-TTTT---C-CCC----CAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCCAAAA-CC---------AA-------------------------------------------------------AACAACAGCAA---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTCACTA---AAAC-------------------------TCCACGCATTTTACCCTCCTAA-A--A-AATGA--------------------------------------------------------------CAACAACAA--AAAA-----------ACACATCAAAATGCT--ACA----------------G---CAGA---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................GCAA---CAGCAGCAA------------------CCACA..............................................................................................................................................................................................................................................................................................................1831.00300003000000000000
droSec2
TTGGAGC---CGA--------------------G--T-TTTT---C-CCC----CAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCCAAAA-CC---------AA-------------------------------------------------------AACAACAGCAA---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTCACTA---AAAC-------------------------TCCACGCATTTTACCCTCCTAA-A--A-AATAA-----------------------------------------------------------------CAACAA--AAAA-----------ACACATCAAAATGCT--ACA----------------G---CAGA---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTGGAGC---TGC--------------------T--T-TTTT-T-C-CCCCCCAAAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCCAAAA-CC---------AA------A---------------ACAAAACCAA--------------AACAGCACCAACAACAGCAA---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTCACTA---AAACAAC---------------AACAAACTCCACGCATTTTACCCTCCTAA-A--A-AATACAA-------------------------------------------------------------------------AA-----------ATACATCGAAATGCA--ACA----------------G---CAGC---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---CAGCCAAAGT---CGAGGA.......................................1911.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TACATCGAAATGCA--ACA----------------G---CAGC---CAGCC.....................................................2711.00101000000000
..........................................................C--------AC-------CC--ATATTTG------CATT-ATGCAATCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
droEre2
TTGGAGC---TGA--------------------G--T-TTTT---C-CCC----CAGAC--------AC-------CC--ATATTTG------CATT-ATGCAATCCAAAA-CC---------AA--------------------------AACCAA--------------AACAACAGCAACAACAGCAA---CAGCAGCAA------------------CCACAA--CAAGCAGC------AAT--CATAAGCTTTAATGTCTCACTA---AAACAA------------------CAAACTCCACGCATTTTACCCTCCTAAAA--A-AATACAA-------------------------------------------------------------------------AA-----------ATACATCAAAATGCT---CA----------------G---CAGC---CAGCCAAAGT---CGAGGAA-------AAGCTG--GCA--------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................ACAGCAA---CAGCAGCAA------------------CCA................................................................................................................................................................................................................................................................................................................1950.2011000000
.............................................................................................................................................................................................AA---CAGCAGCAA------------------CCACAA--C..........................................................................................................................................................................................................................................................................................................1850.2010000010
.................................................................................................................................................................................AGCAACAACAGCAA---CAGCAGCA......................................................................................................................................................................................................................................................................................................................................22160.0610000010
...................................................................................................................................................................................CAACAACAGCAA---CAGCAGC.......................................................................................................................................................................................................................................................................................................................................19200.0511000000
...................................................................................................................................................................................CAACAACAGCAA---CAGCAGCA......................................................................................................................................................................................................................................................................................................................................20200.0510100000
..................................................................................................................................................................................GCAACAACAGCAA---CAGCAGC.......................................................................................................................................................................................................................................................................................................................................20200.0510100000
dp5
GCAG--C---TGC--------------------A--------------------ATAAT--------GC------ACA--TTTCTGCTGAGGTCA---GTTCGACC------ACCTCAAATCAAA---TACAGC-----------------------------A--GC---AACAGCAACAGCAACAACAA---CAGCAGCAG------CAGCAG------CACCAA--CA-GCTTCACCAACAG------TTGCA-------CCAACAA---CACCAA-------------------------------------------------------------------------------------------------------------------------CAGCAA--ACGA-------C-TCCAACAGCAACG-ACC--ACA---------ACGGGCGG---CAG----CACCACGAAG---CGGCGTAATGCAG-AGTC--------------------CTCCTCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................AG------CAGCAG------CACCAA--CA-GCT.....................................................................................................................................................................................................................................................................................................1930.3310000100000
.......................................................................................................................................................................................................................................................................CCAACAA---CACCAA-------------------------------------------------------------------------------------------------------------------------CAGCAA--T.......................................................................................................................2060.1710100000000
............................................................................................................................................................................................CAA---CAGCAGCAG------CAGCAG------C..................................................................................................................................................................................................................................................................................................................19200.1530300000000
.................................................................................................................................................................................AACAGCAACAACAA---CAGCAGCAG------...............................................................................................................................................................................................................................................................................................................................23200.1020000000002
..........................................................................................................................................................................................AACAA---CAGCAGCAG------CAGCAG------C..................................................................................................................................................................................................................................................................................................................21200.1020200000000
.........................................................................................................................................................................................CAACAA---CAGCAGCAG------CAGCAG------CA.................................................................................................................................................................................................................................................................................................................23200.0510100000000
......................................................................................................................................................................................CAACAACAA---CAGCAGCAG------CAGC...........................................................................................................................................................................................................................................................................................................................22200.0510010000000
...................................................................................................................................................................................CAGCAACAACAA---CAGCAGCAG------...............................................................................................................................................................................................................................................................................................................................21200.0510100000000
.....................................................................................................................................................................................GCAACAACAA---CAGCAGCAG------C..............................................................................................................................................................................................................................................................................................................................20200.0510000100000
..............................................................................................................................................................................................A---CAGCAGCAG------CAGCAG------CAC................................................................................................................................................................................................................................................................................................................19200.0510000100000
..............................................................................................................................................................................AGCAACAGCAACAACAA---CAGCA.........................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.................................................................................................................................................................................AACAGCAACAACAA---CAGCAGCAG------C..............................................................................................................................................................................................................................................................................................................................24200.0510100000000
..................................................................................................................................................................................................CAGCAGCAG------CAGCAG------CACCA..............................................................................................................................................................................................................................................................................................................20200.0510100000000
........................................................................................................................................................................................ACAACAA---CAGCAGCAG------CAGCAG------...................................................................................................................................................................................................................................................................................................................22200.0510100000000
....................................................................................................................................................................................AGCAACAACAA---CAGCAGCA......................................................................................................................................................................................................................................................................................................................................19200.0510100000000
.....................................................................................................................................................................................GCAACAACAA---CAGCAGCAG------CAGCAG------...................................................................................................................................................................................................................................................................................................................25200.0510100000000
......................................................................................................................................................................................CAACAACAA---CAGCAGCAG------CAG............................................................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
--------------------------------------------------------------------------------------G------CATT-ATGCAATCGAAAA-----------------TAC----------------------------------------AACAGCAACAACAACAACAA---CAACAACAA------------------CAACAA--CAACAAGA------AATCCCACATGCTTTAATGTCT--------------------------------------CCACGCATT-TACCCCCTCAA-A--A-AAAACACATGCAACATGCAACATGCAGCA-------------------------------------GCAGCAGCAGCAACA------------------------ACA--GCA------ACAACAAGCAG---CAG----CCGCAACAGC---AGGGGAA-------AAGCTC--CCA------------------CCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................CAACAA------------------CAACAA--CAACAAGA------.............................................................................................................................................................................................................................................................................................20200.051001000
.....................................................................................................................................................................................................................................................................................................................................................................CA-------------------------------------GCAGCAGCAGCAACA------------------------ACA--........................................................................................20200.051001000
......................................................................................................................................................................................CAACAACAA---CAACAACAA------------------CAA................................................................................................................................................................................................................................................................................................................21200.051001000
................................................................................................................................................................................CAACAACAACAACAA---CAACAACAA------------------CAAC...............................................................................................................................................................................................................................................................................................................28200.051010000
droWil2
CAGAAAG---AGG--------------------A--A-TT-----C-CTC----AAATC--------GCCAGTACCCA--GTAACGG----ATCACC-AGGCAATCAACAG-CA---------AC----------------------------------------------A---GCAGCAACAGCAGCAA---CAGCAGCAA---CACCAGCAACAACAACAA---------CA------------------ACATTTCTTTCCTACAA---CTTCAA-------------------------------------------------C-AGTACACAATCAATTTCCAGCA--CAACCGGCGCTACCGCCACGAGGA----------------CGCCAACAGCA------------------------------GCA--ACT------GCA-------G---CAAG---CAGC---AAT------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................ATC--------GCCAGTACCCA--GTAACGG----AT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.................................A--A-TT-----C-CTC----AAATC--------GCCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.........................................................................................................CAACAG-CA---------AC----------------------------------------------A---GCAGCAACAGC......................................................................................................................................................................................................................................................................................................................................................22200.05101000
.......................................................................................................ATCAACAG-CA---------AC----------------------------------------------A---GCAGC............................................................................................................................................................................................................................................................................................................................................................18200.05100010
..........................................................................................................AACAG-CA---------AC----------------------------------------------A---GCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................18200.05100010
droVir3
TATCGC-----GAGT------------------G--T-TAGT---G-CCA----ATAAC--AACAACAA-------CA--ATGTGAA------C---------------------TTAACGAA-----TGCAACTGCAACAGCAATAACA--ACAAC--------------AACAGCAACAACAGCAGCTA---CAGCTGCAA------------------CAGCAA--C-AGCAGC------GG------AAGCA-------------------ACGA------------------CAAC-ATCGCTCGGCT--------TGA-G--C-GATGAAC----------------------------------------------------------------AGCAA--CAAT-----------CGACATCGGC----A--GCA----------------G---CAG----CAGCAGCAGC---AGCAGCA-------A--CTG-----------------TTGCTGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................A--C-AGCAGC------GG------AAGCA-------------------ACGA------------------C......................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AC----------------------------------------------------------------AGCAA--CAAT-----------CGACATCGGC----A--GCA----------------G---CA...............................................................2811.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................AGCAA--C-AGCAGC------GG------AAGCA-------------------AC...........................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................AA--C-AGCAGC------GG------AAGCA-------------------ACGA------------------.......................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CGGCT--------TGA-G--C-GATGAAC----------------------------------------------------------------A..............................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TAACGAA-----TGCAACTGCAACAGC.................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------CGACATCGGC----A--GCA----------------G---C................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CGGCT--------TGA-G--C-GATGAAC----------------------------------------------------------------AGC............................................................................................................................2011.001000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA----------------G---CAG----CAGCAGCAGC---A............................................18200.255005000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TGCAA------------------CAGCAA--C-AGCAGC------G............................................................................................................................................................................................................................................................................................1940.251000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC---AGCAGCA-------A--CTG-----------------TT......2280.131000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................GCAATAACA--ACAAC--------------AACAGCA..............................................................................................................................................................................................................................................................................................................................................................21130.081000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---AGCAGCA-------A--CTG-----------------TT......18200.051100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................AACAGCAACAACAGCAGC...................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
CTGCAGC---AGC--------------------T--C-C--------GCA----AATGC--------AT-------CC--ACATGCG------CATGTAGGTGGCCCACCG-C-CTCCACACA-----TGCCGCCA-----------CAC------A-----------------TGGCGCCCCAGCAGCAACAGCAGCAGCCG---CCTCAGCAG------CCACCA-CCTGGCGGC------ATG--CCTGGTCTGCCA-------------C--------------------------------CGCCGTTGCCCCACATGG-G--C-TATGCCA-------------ACTATGGTGGACCCGGTCCCGGCCAGCACTCGCACACGCACTACTACCAGCCGCAG---------------------------------------------------------TAT----GGACCGCACT---CGAG--A-------CCGCAG--CCCTACTACACGCACCTACCGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................GGCCCACCG-C-CTCCACACA-----TGCCGCCA-----------C............................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................................................................................................................................................................................................................................GGC------ATG--CCTGGTCTGCCA-------------C--------------------------------CGCCGT........................................................................................................................................................................................................................2511.001100000
.................................T--C-C--------GCA----AATGC--------AT-------CC--ACATGCG------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................CAGCCG---CCTCAGCAG------CCACCA-CC..........................................................................................................................................................................................................................................................................................................2311.001000010
droGri2
CTGCCGC---CGC--------------------C--C-CCGT---CGCCG-CCAACGTC--------GC-------CC--ACGATCA------C------GC------------CTCCAATCACGCCCTGCAACCTCATCAGCAATAGCA--ACAAC--------------AACAACAATAGCAACAGCAA---CAGCAGCAACGGCAATAGCAACAACAACAACCA--ACAACAAC------AC------A--------------ATCA---TAACAA-------------------------------------------------------------------------------------------------------------------CATCAACAACAGTAACAA-----------CCACATTGACACGCCCAACA----------------A---CAGT---TTGCT---GC---TGAGCCC---CACTAAGCAGATGCT--------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT---GC---TGAGCCC---CACTAAGCA..........................2111.00110
....................................................................................................................................................................................................................CAACAACAACAACCA--ACAACAAC------.............................................................................................................................................................................................................................................................................................23100.10110
......................................................................................................................................................................................................................ACAACAACAACCA--ACAACAAC------.............................................................................................................................................................................................................................................................................................21170.06110
........................................................................................................................................................................................................................AACAACAACCA--ACAACAAC------A............................................................................................................................................................................................................................................................................................20190.05110
.....................................................................................................................................................................................................................AACAACAACAACCA--ACAACA.....................................................................................................................................................................................................................................................................................................20200.05110
.........................................................................................................................................................................................................................ACAACAACCA--ACAACAAC------A............................................................................................................................................................................................................................................................................................19200.05110

Generated: 05/18/2015 at 04:17 AM