ID:

dan_2304

 Coordinate:

scaffold_13337:821-914 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.8 -6.6 -6.6 -6.5

Flybase annnotation

exon [dana_GLEANR_9579:1]; CDS [Dana\GF24892-cds]; exon [dana_GLEANR_9579:2]; CDS [Dana\GF24892-cds]; intron [Dana\GF24892-in]

No Repeatable elements found

mature
  1. scaffold_12916:155-179 -
  2. dan_2304  scaffold_13337:859-883 -
star
  1. dan_2304  scaffold_13337:824-848 -
  2. dan_2825  scaffold_13340:945-969 -

Sense Strand Reads

------------------------------------##############----------------------------------------------------------------------------------------------##################################################
GCATTTGGGTTGCATGCAGTGGCTGTGCCAGCAACAATGGCGTCCAACAGGTGAGTCTTTTAAGCAAGTGGCTAATTTTCTTATATCCAATTGGAAGAAAAGGGGTCATTTGTGCATAATATTCATGTTTATCCATTTTTCTAGGAAGATGTCGCCGGCGGCAAATTGGCAGCAGCGTCGGCCGAAGTTGGCGT
*********************************************************************************...........((...((((.((((.......((((.......))))..)))).))))))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body		 V055
head
 V106
head
............................................CAACAGGTGAGTCTTTTAAGCAAGTGGC.......................................................................................................................... 28 0 1 211.00 211 147 60 4 0 0 0
............................................CAACAGGTGAGTCTTTTAAGCAAGTGG........................................................................................................................... 27 0 1 189.00 189 130 54 4 1 0 0
..........TGCATGCAGTGGCTGTGCCAGCAAC............................................................................................................................................................... 25 0 1 107.00 107 27 80 0 0 0 0
............................................CAACAGGTGAGTCTTTTAAGCAAGTG............................................................................................................................ 26 0 1 57.00 57 38 13 6 0 0 0
..........................................TCCAACAGGTGAGTCTTTTAAGCAAG.............................................................................................................................. 26 0 1 43.00 43 30 11 2 0 0 0
............................................CAACAGGTGAGTCTTTTAAGCAAGT............................................................................................................................. 25 0 1 37.00 37 13 14 10 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCCGGCGGCAAAT............................ 25 0 1 35.00 35 28 7 0 0 0 0
.............................................AACAGGTGAGTCTTTTAAGCAAGTGG........................................................................................................................... 26 0 1 32.00 32 26 5 1 0 0 0
...................................................................................................................................................GATGTCGCCGGCGGCAAATTGGCAGC..................... 26 0 1 29.00 29 6 22 1 0 0 0
..........TTCATGCAGTGGCTGTGCCAGCAAC............................................................................................................................................................... 25 1 1 27.00 27 0 27 0 0 0 0
.............................................AACAGGTGAGTCTTTTAAGCAAGTGGC.......................................................................................................................... 27 0 1 25.00 25 16 8 1 0 0 0
.........................TGCCAGCAACAATGGCGTCCAACAGG............................................................................................................................................... 26 0 1 25.00 25 16 6 3 0 0 0
..........................................................................................................................................TTCTAGGAAGATGTCGCCGGCGGC................................ 24 0 1 24.00 24 13 11 0 0 0 0
..........TGCATGCAGTGGCTGTGCCAGCAACA.............................................................................................................................................................. 26 0 1 24.00 24 19 5 0 0 0 0
..............TGCAGTGGCTGTGCCAGCAACAATGG.......................................................................................................................................................... 26 0 1 24.00 24 20 4 0 0 0 0
.........................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGC................................ 25 0 1 23.00 23 5 17 1 0 0 0
..........................................................................................................................................TTCTAGGAAGATGTCGCCGGCGG................................. 23 0 1 23.00 23 19 4 0 0 0 0
............................................CAACAGGTGAGTCTTTTAAGCAAG.............................................................................................................................. 24 0 1 22.00 22 13 8 0 0 0 1
.....................................................................................................................................................TGTCGCCGGCGGCAAATTGGCAGC..................... 24 0 1 22.00 22 6 15 1 0 0 0
...................................................................................................................................TCCATTTTTCTAGGAAGATGTCGCCGGC................................... 28 0 1 22.00 22 17 5 0 0 0 0
.................................................................................TATATCCAATTGGAAGAAAAGGGGT........................................................................................ 25 0 2 21.50 43 4 33 6 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCCGGCGGCAAATT........................... 26 0 1 19.00 19 16 3 0 0 0 0
...................................................................................................................................TCCATTTTTCTAGGAAGATGTCGCCGG.................................... 27 0 1 18.00 18 12 6 0 0 0 0
.....TGGGTTGCATGCAGTGGCTGTGCCAGC.................................................................................................................................................................. 27 0 1 17.00 17 3 14 0 0 0 0
......................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTG.... 24 0 1 17.00 17 9 7 1 0 0 0
...................................................................................................................................TCCATTTTTCTAGGAAGATGTCGCC...................................... 25 0 1 17.00 17 1 16 0 0 0 0
......................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTGG... 25 0 1 16.00 16 10 6 0 0 0 0
.................................................................................TATATCCAATTGGAAGAAAAGGGGTC....................................................................................... 26 0 2 15.00 30 4 21 5 0 0 0
...............................................CAGGTGAGTCTTTTAAGCAAGTGGC.......................................................................................................................... 25 0 1 14.00 14 3 9 1 0 1 0
.......................................................................................................................................TTTTTCTAGGAAGATGTCGCCGGCGGC................................ 27 0 1 14.00 14 5 9 0 0 0 0
...............................................................................................................................................................GGCAAATTGGCAGCAGCGTCGGC............ 23 0 1 14.00 14 4 9 1 0 0 0
..........TGCATGCAGTGGCTGTGCCAGC.................................................................................................................................................................. 22 0 1 14.00 14 3 11 0 0 0 0
.......................................................................................................................................TTTTTCTAGGAAGATGTCGCCGGCGG................................. 26 0 1 14.00 14 11 3 0 0 0 0
.........TTGCATGCAGTGGCTGTGCCAGCAAC............................................................................................................................................................... 26 0 1 14.00 14 7 7 0 0 0 0
.................................................................................TATATCCAATTGGAAGAAAAGGGG......................................................................................... 24 0 2 14.00 28 3 17 8 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCCGGCGGCAAATTG.......................... 27 0 1 13.00 13 12 1 0 0 0 0
.........................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGG................................. 24 0 1 13.00 13 10 3 0 0 0 0
........................................................................................................................................TTTTCTAGGAAGATGTCGCCGGCGG................................. 25 0 1 13.00 13 13 0 0 0 0 0
..........TGCATGCAGTGGCTGTGCCAGCAACAA............................................................................................................................................................. 27 0 1 12.00 12 10 2 0 0 0 0
..........TGCATGCAGTGGCTGTGCCAGCA................................................................................................................................................................. 23 0 1 12.00 12 4 8 0 0 0 0
........................................................................................................................................TTTTCTAGGAAGATGTCGCCGGCGGC................................ 26 0 1 12.00 12 3 9 0 0 0 0
.....................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTGG... 26 0 1 11.00 11 10 1 0 0 0 0
..............TGCAGTGGCTGTGCCAGCAACAATG........................................................................................................................................................... 25 0 1 11.00 11 10 1 0 0 0 0
...........................................................................................................................................TCTAGGAAGATGTCGCCGGCGGCAAAT............................ 27 0 1 10.00 10 7 3 0 0 0 0
....TTGGGTTGCATGCAGTGGCTGTGCCAGC.................................................................................................................................................................. 28 0 1 10.00 10 4 6 0 0 0 0
...............................................................................................................................................................GGCAAATTGGCAGCAGCGTCGGCCGA......... 26 0 1 9.00 9 3 6 0 0 0 0
.....................................................................................................................................CATTTTTCTAGGAAGATGTCGCCGG.................................... 25 0 1 9.00 9 6 3 0 0 0 0
................................................................................................................................................GAAGATGTCGCCGGCGGCAAATTGGC........................ 26 0 1 9.00 9 7 1 0 1 0 0
..........................................................................................................................................TTCTAGGAAGATGTCGCCGGCGGCAAA............................. 27 0 1 8.00 8 7 1 0 0 0 0
.........TTGCATGCAGTGGCTGTGCCAGC.................................................................................................................................................................. 23 0 1 8.00 8 0 8 0 0 0 0
..........................................................................................................................................TTCTAGGAAGATGTCGCCGGCGGCAAAT............................ 28 0 1 8.00 8 6 2 0 0 0 0
................................................................................................................................................GAAGATGTCGCCGGCGGCAAATTGG......................... 25 0 1 8.00 8 4 2 2 0 0 0
..........................................................................................TTGGAAGAAAAGGGGTCATTTGTGC............................................................................... 25 0 2 7.50 15 2 10 3 0 0 0
....................................................................................................................TAATATTCATGTTTATCCATTTTTC..................................................... 25 0 2 7.00 14 1 13 0 0 0 0
...............................................................................................................................................................GGCAAATTGGCAGCAGCGTCGGCC........... 24 0 1 7.00 7 2 5 0 0 0 0
...........................................................................................................................................TCTAGGAAGATGTCGCCGGCGGC................................ 23 0 1 7.00 7 4 3 0 0 0 0
..........................................................................................................................................TTCTAGGAAGATGTCGCCGGCGGCA............................... 25 0 1 7.00 7 7 0 0 0 0 0
.......................................................................................................................................................TCGCCGGCGGCAAATTGGCAGCAGC.................. 25 0 1 7.00 7 2 5 0 0 0 0
........................................................................................................................................TTTTCTAGGAAGATGTCGCCGGC................................... 23 0 1 7.00 7 4 2 1 0 0 0
..............TGCAGTGGCTGTGCCAGCAACAATGGC......................................................................................................................................................... 27 0 1 7.00 7 4 3 0 0 0 0
.....................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTGGC.. 27 0 1 7.00 7 3 4 0 0 0 0
..........TGCATGCAGTGGCTGTGCCAGCAA................................................................................................................................................................ 24 0 1 7.00 7 4 3 0 0 0 0
.....................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTGGCGT 29 0 1 7.00 7 4 3 0 0 0 0
.........................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGCA............................... 26 0 1 6.00 6 5 1 0 0 0 0
...TTTGGGTTGCATGCAGTGGCTGT........................................................................................................................................................................ 23 0 1 6.00 6 3 3 0 0 0 0
.......................TGTGCCAGCAACAATGGCGTCCAACAGG............................................................................................................................................... 28 0 1 6.00 6 6 0 0 0 0 0
...................................................................................................................................................GATGTCGCCGGCGGCAAATTGGCAGCA.................... 27 0 1 6.00 6 5 1 0 0 0 0
.......................................................................................................................................TTTTTCTAGGAAGATGTCGCCGGC................................... 24 0 1 6.00 6 4 2 0 0 0 0
.................................................................................................................................TATCCATTTTTCTAGGAAGATGTCGCC...................................... 27 0 1 6.00 6 0 6 0 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCCGGCGGCAAA............................. 24 0 1 6.00 6 3 3 0 0 0 0
................................AACAATGGCGTCCAACAGGTGAGTC......................................................................................................................................... 25 0 1 6.00 6 0 4 2 0 0 0
.................................................................................TATATCCAATTGGAAGAAAAGGGGC........................................................................................ 25 1 2 5.50 11 0 11 0 0 0 0
................CAGTGGCTGTGCCAGCAACAATGG.......................................................................................................................................................... 24 0 1 5.00 5 5 0 0 0 0 0
................................................................................TTATATCCAATTGGAAGAAAAGGGG......................................................................................... 25 0 2 5.00 10 1 9 0 0 0 0
..........TTAATGCAGTGGCTGTGCCAGCAAC............................................................................................................................................................... 25 2 1 5.00 5 0 5 0 0 0 0
.....................................................................................................................................CATTTTTCTAGGAAGATGTCGCCGGC................................... 26 0 1 5.00 5 3 0 2 0 0 0
...................................................TGAGTCTTTTAAGCAAGTGGCTAATT..................................................................................................................... 26 0 1 5.00 5 1 4 0 0 0 0
.........................TGCCAGCAACAATGGCGTCCAACAG................................................................................................................................................ 25 0 1 5.00 5 3 2 0 0 0 0
..................................................................................................................................................AGATGTCGCCGGCGGCAAATTGGCAGC..................... 27 0 1 5.00 5 3 2 0 0 0 0
...................................................................................................................................................GATGTCGCCGGCGGCAAATTGGCAG...................... 25 0 1 5.00 5 4 1 0 0 0 0
..........................................TCCAACAGGTGAGTCTTTTAAGCAAGT............................................................................................................................. 27 0 1 5.00 5 0 5 0 0 0 0
.....................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTGGCG. 28 0 1 5.00 5 4 1 0 0 0 0
......................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTGGCG. 27 0 1 5.00 5 4 1 0 0 0 0
...........GCATGCAGTGGCTGTGCCAGCAAC............................................................................................................................................................... 24 0 1 5.00 5 5 0 0 0 0 0
....TTGGGTTGCATGCAGTGGCTGTGC...................................................................................................................................................................... 24 0 1 5.00 5 2 3 0 0 0 0
...................................................TGAGTCTTTTAAGCAAGTGGCTAAT...................................................................................................................... 25 0 1 5.00 5 2 3 0 0 0 0
.....................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTT..... 24 0 1 5.00 5 0 5 0 0 0 0
......................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTGGCGT 28 0 1 5.00 5 4 1 0 0 0 0
.............................................AACAGGTGAGTCTTTTAAGCAAGTG............................................................................................................................ 25 0 1 5.00 5 5 0 0 0 0 0
...TTTGGGTTGCATGCAGTGGCTGTGCCAGC.................................................................................................................................................................. 29 0 1 5.00 5 0 5 0 0 0 0
...TTTGGGTTGCATGCAGTGGCTGTGC...................................................................................................................................................................... 25 0 1 5.00 5 2 3 0 0 0 0
......................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTGGC.. 26 0 1 5.00 5 0 5 0 0 0 0
.....TGGGTTGCATGCAGTGGCTGTGC...................................................................................................................................................................... 23 0 1 5.00 5 2 3 0 0 0 0
................................................................................................................................................................GCAAATTGGCAGCAGCGTCGGC............ 22 0 1 5.00 5 0 5 0 0 0 0
.....................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGT...... 23 0 1 5.00 5 1 4 0 0 0 0
........................................................................................................................................TTTTCTAGGAAGATGTCGCCGG.................................... 22 0 1 5.00 5 4 1 0 0 0 0
................................................................................................................................................................GCAAATTGGCAGCAGCGTCGGCCGAAG....... 27 0 1 4.00 4 2 2 0 0 0 0
GCATTTGGGTTGCATGCAGTGGCTG......................................................................................................................................................................... 25 0 1 4.00 4 3 1 0 0 0 0
..............TGCAGTGGCTGTGCCAGCAACAATGGCG........................................................................................................................................................ 28 0 1 4.00 4 4 0 0 0 0 0
...................................................................................................................................................GATGTCGCCGGCGGCAAATTGGC........................ 23 0 1 4.00 4 1 3 0 0 0 0
................................................................................................................................................................GCAAATTGGCAGCAGCGTCGGCCGA......... 25 0 1 4.00 4 2 2 0 0 0 0
...............................................................................................................................................................GTCAAATTGGCAGCAGCGTCGGC............ 23 1 1 4.00 4 0 4 0 0 0 0
..........TGAATGCAGTGGCTGTGCCAGCAAC............................................................................................................................................................... 25 1 1 4.00 4 0 4 0 0 0 0
...TTTGGGTTGCATGCAGTGGCTG......................................................................................................................................................................... 22 0 1 4.00 4 1 2 1 0 0 0
................................................................................................................................................................GCAAATTGGCAGCAGCGTCGGCC........... 23 0 1 4.00 4 0 4 0 0 0 0
..........................................................................................................................................TTCTAGGAAGATGTCGCCGGCG.................................. 22 0 1 4.00 4 4 0 0 0 0 0
.........................................................................................................................................................................CAGCAGCGTCGGCCGAAGTTGGC.. 23 0 1 4.00 4 0 4 0 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCCGGCG.................................. 19 0 1 4.00 4 3 1 0 0 0 0
............................................................................................................................................................GGCGGCAAATTGGCAGCAGCGTCGGCC........... 27 0 1 4.00 4 1 3 0 0 0 0
........................................................................................................................................TTTTCTAGGAAGATGTCGCCGGCGGCA............................... 27 0 1 4.00 4 4 0 0 0 0 0
.......................................................................................................................................................TCGCCGGCGGCAAATTGGCAGCAG................... 24 0 1 4.00 4 2 1 1 0 0 0
.............................................................................................................................................................GCGGCAAATTGGCAGCAGCGTCGGCC........... 26 0 1 4.00 4 2 2 0 0 0 0
.....................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTG.... 25 0 1 4.00 4 4 0 0 0 0 0
...........................................................................................................................................TCTAGGAAGATGTCGCCGGCGG................................. 22 0 1 4.00 4 4 0 0 0 0 0
...............................................................................................................................TTTATCCATTTTTCTAGGAAGATGTCGCC...................................... 29 0 1 4.00 4 0 4 0 0 0 0
.......................................................................................................................................TTTTTCTAGGAAGATGTCGCCGG.................................... 23 0 1 4.00 4 2 1 1 0 0 0
.....................................................................................TCCAATTGGAAGAAAAGGGGTCATT.................................................................................... 25 0 3 3.67 11 3 8 0 0 0 0
.................................................................................TATATCCAATTGGAAGAAAAGGGGTCAT..................................................................................... 28 0 2 3.50 7 3 3 1 0 0 0
.................................................................................TATATCCAATTGGAAGAAAAGGG.......................................................................................... 23 0 2 3.50 7 3 3 1 0 0 0
..........TGCATGCAGTGGCTGTGCCAGCAACAAT............................................................................................................................................................ 28 0 1 3.00 3 3 0 0 0 0 0
..............TGCAGTGGGTGTGCCAGCAACAATGG.......................................................................................................................................................... 26 1 1 3.00 3 3 0 0 0 0 0
.....................................................................................................................................................TGTCGCCGGCGGCAAATTGGCA....................... 22 0 1 3.00 3 1 2 0 0 0 0
...........GCATGCAGTGGCTGTGCCAGCA................................................................................................................................................................. 22 0 1 3.00 3 1 2 0 0 0 0
......................................................................................................................................................................TTGCAGCAGCGTCGGCCGAAGTTGG... 25 1 1 3.00 3 0 3 0 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCCGGCGGCAAATTGG......................... 28 0 1 3.00 3 3 0 0 0 0 0
..................GTGGCTGTGCCAGCAACAATGGCGTC...................................................................................................................................................... 26 0 1 3.00 3 0 3 0 0 0 0
.....................................................................................................................................................TGTCGCCGGCGGCAAATTGGCAG...................... 23 0 1 3.00 3 3 0 0 0 0 0
.........TTGCATGCAGTGGCTGTGCCAGCA................................................................................................................................................................. 24 0 1 3.00 3 0 3 0 0 0 0
.........................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGCAAA............................. 28 0 1 3.00 3 2 1 0 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCCGGCGG................................. 20 0 1 3.00 3 3 0 0 0 0 0
...................................................................................................................................TCCATTTTTCTAGGAAGATGTCGCCGGCG.................................. 29 0 1 3.00 3 3 0 0 0 0 0
...............GCAGTGGCTGTGCCAGCAACAATGG.......................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0
............................................................................................................................................................GGCGGCAAATTGGCAGCAGCGTCGGC............ 26 0 1 3.00 3 0 3 0 0 0 0
........................................................................................................................................................................GCAGCAGCGTCGGCCGAAGTTGGC.. 24 0 1 3.00 3 1 2 0 0 0 0
................................................................................................................................................GAAGATGTCGCCGGCGGCAAATTG.......................... 24 0 1 3.00 3 1 0 2 0 0 0
...........................................CCAACAGGTGAGTCTTTTAAGCAAG.............................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0 0
...............................................................................................................................................................GGCAAATTGGCAGCAGCGTCGG............. 22 0 1 3.00 3 1 1 1 0 0 0
.....................................................................................................................................................TGTCGCCGGCGGCAAATTGGCAGCAG................... 26 0 1 3.00 3 3 0 0 0 0 0
...........................................................................................................................................................................GCAGCGTCGGCCGAAGTTGGCGT 23 0 1 3.00 3 1 1 1 0 0 0
......................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTGGCGC 28 1 1 3.00 3 0 3 0 0 0 0
............................................CAACAGGTGAGTCTTTTAAGCAAGTGT........................................................................................................................... 27 1 1 3.00 3 1 2 0 0 0 0
.......................................................................................................................................TTTTTCTAGGAAGATGTCGCC...................................... 21 0 1 3.00 3 0 3 0 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCCGGCGGCAA.............................. 23 0 1 3.00 3 2 1 0 0 0 0
.....................................................................................................................................................TGTCGCCGGCGGCAAATTGGCAGCA.................... 25 0 1 3.00 3 3 0 0 0 0 0
............................................................................................................................................................GGCGGCAAATTGGCAGCAGCGTCGG............. 25 0 1 3.00 3 3 0 0 0 0 0
........................................................................................................................................TTTTCTAGGAAGATGTCGCC...................................... 20 0 1 3.00 3 0 3 0 0 0 0
........................................................................................................................................TGTTCTAGGAAGATGTCGCCGGCGGC................................ 26 1 1 3.00 3 0 3 0 0 0 0
.........................................GTCCAACAGGTGAGTCTTTTAAGCAAG.............................................................................................................................. 27 0 1 3.00 3 3 0 0 0 0 0
..........................................TCCAACAGGTGAGTCTTTTAAGCAAGTG............................................................................................................................ 28 0 1 3.00 3 3 0 0 0 0 0
.........................................................................................................................................TTTCTAGGAAGATGTCGCCGGCG.................................. 23 0 1 3.00 3 3 0 0 0 0 0
.....................................TGGCGTCCAACAGGTGAGTCTTTTAAG.................................................................................................................................. 27 0 1 3.00 3 3 0 0 0 0 0
.....................................................................................................................................................TTTCGCCGGCGGCAAATTGGCAGC..................... 24 1 1 3.00 3 0 3 0 0 0 0
................................................................................TTATATCCAATTGGAAGAAAAGGGGT........................................................................................ 26 0 2 3.00 6 0 6 0 0 0 0
.........................................................................................................................................TGTCTAGGAAGATGTCGCCGGCGGC................................ 25 1 1 3.00 3 0 3 0 0 0 0
...................................................................................................................................TGCATTTTTCTAGGAAGATGTCGCC...................................... 25 1 1 3.00 3 0 3 0 0 0 0
.....................................................................................................................................CATTTTTCTAGGAAGATGTCGCC...................................... 23 0 1 3.00 3 0 3 0 0 0 0
............................................CAACAGGTTAGTCTTTTAAGCAAGTGGC.......................................................................................................................... 28 1 1 3.00 3 3 0 0 0 0 0
................................AACAATGGCGTCCAACAGGTGAGTCT........................................................................................................................................ 26 0 1 3.00 3 2 1 0 0 0 0
.........................TGCCAGCAACAATGGCGTCCAACAGGT.............................................................................................................................................. 27 0 1 3.00 3 2 1 0 0 0 0
............................................CGACAGGTGAGTCTTTTAAGCAAGTGG........................................................................................................................... 27 1 1 3.00 3 0 3 0 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCCGGCGGC................................ 21 0 1 3.00 3 1 2 0 0 0 0
.........................TGCCAGCAACAATGGCGTCCAACA................................................................................................................................................. 24 0 1 3.00 3 2 1 0 0 0 0
.........................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGCAAAT............................ 29 0 1 3.00 3 3 0 0 0 0 0
.............................................................................................................................................................GCGGCAAATTGGCAGCAGCGTCGGC............ 25 0 1 3.00 3 0 3 0 0 0 0
..........................................................................................................................TCATGTTTATCCATTTTTCTAGGAAGA............................................. 27 0 1 3.00 3 0 3 0 0 0 0
...............................................................................................................................................................GTCAAATTGGCAGCAGCGTCGGCC........... 24 1 1 3.00 3 0 3 0 0 0 0
......................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGT...... 22 0 1 3.00 3 0 3 0 0 0 0
........................................................................TAATTTTCTTATATCCAATTGGAAGA................................................................................................ 26 0 1 3.00 3 1 2 0 0 0 0
..........TTCATGCAGTGGCTGTGCCAGCAACA.............................................................................................................................................................. 26 1 1 3.00 3 0 3 0 0 0 0
.........................................................................................................................TTCATGTTTATCCATTTTTCTAGGAA............................................... 26 0 2 2.50 5 1 4 0 0 0 0
..............................................................................TCTTATATCCAATTGGAAGAAAAGGGG......................................................................................... 27 0 2 2.50 5 2 2 1 0 0 0
..........................................................................................................................TCATGTTTATCCATTTTTCTAGGAA............................................... 25 0 2 2.50 5 2 3 0 0 0 0
........................................................................TAATTTTCTTATATCCAATTGGAAGAAA.............................................................................................. 28 0 1 2.00 2 1 1 0 0 0 0
....TGGGGTTGCATGCAGTGGCTGTGCCAGC.................................................................................................................................................................. 28 1 1 2.00 2 0 2 0 0 0 0
...TTTGGGTTGCATGCAGTGGCTGC........................................................................................................................................................................ 23 1 1 2.00 2 0 2 0 0 0 0
............................................CAATAGGTGAGTCTTTTAAGCAAGTGGC.......................................................................................................................... 28 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................................................................................................GCAGCGTCGGCCGAAGTTGGC.. 21 0 1 2.00 2 0 2 0 0 0 0
......................................................................................................................................................................TTGCAGCAGCGTCGGCCGAAGTT..... 23 1 1 2.00 2 0 2 0 0 0 0
..........................................................................................................................................TTCTAGGAGGATGTCGCCGGC................................... 21 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................................TTCTAGGAAGATGTCGCCGG.................................... 20 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................TAGGAAGAGGTCGCCGGCGGCAAAT............................ 25 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................................TTCTAGGAGGATGTCGCCGGCGG................................. 23 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................................................CCATTTTTCTAGGAAGATGTCGCCGG.................................... 26 0 1 2.00 2 2 0 0 0 0 0
.................................................................................TATATCCAATTGGAAGAAAAGGGGTCATT.................................................................................... 29 0 2 2.00 4 3 1 0 0 0 0
...................................................................................................................................................GATGTCGCCGGCGGCAAATTGGCA....................... 24 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................GCAAATTGGCAGCAGCGTCGGCCGAA........ 26 0 1 2.00 2 1 1 0 0 0 0
......................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTT..... 23 0 1 2.00 2 0 2 0 0 0 0
..............TTCAGTGGCTGTGCCAGCAACAATGG.......................................................................................................................................................... 26 1 1 2.00 2 0 2 0 0 0 0
...TTTGGGTTGCATGCAGTGGCTGTG....................................................................................................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0
..............................GCAACAATGGCGTCCAACAGGTGAGTCT........................................................................................................................................ 28 0 1 2.00 2 0 2 0 0 0 0
............................................CAACAGGTGAGTCTTTTAAGCAAGC............................................................................................................................. 25 1 1 2.00 2 0 2 0 0 0 0
.........................................................................................................................TTCATGTTTATCCATTTTTCTAGGAAGA............................................. 28 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................................................................TCTAGGAAGATGTCGCCGGCGGCAAATT........................... 28 0 1 2.00 2 2 0 0 0 0 0
....................................................GAGTCTTTTAAGCAAGTGGC.......................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0
.....TGGGTTGCATGCAGTGGCTGTGCCAGCA................................................................................................................................................................. 28 0 1 2.00 2 0 2 0 0 0 0
............................................CAACAGGTAAGTCTTTTAAGCAAGTGG........................................................................................................................... 27 1 1 2.00 2 1 0 1 0 0 0
.....TGGGTTGCATGCAGTGGCTGTG....................................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0
..........................................................................................................................................TTCTAGGAAGATGTCGCCGGC................................... 21 0 1 2.00 2 2 0 0 0 0 0
.....TTGGTTGCATGCAGTGGCTGTGCCAGC.................................................................................................................................................................. 27 1 1 2.00 2 0 2 0 0 0 0
...............................CAACAATGGCGTCCAACAGGTGAGTC......................................................................................................................................... 26 0 1 2.00 2 0 1 1 0 0 0
......................................................................................................................................................................TTGCAGCAGCGTCGGCCGAAGTTGGCGT 28 1 1 2.00 2 0 2 0 0 0 0
............................................................................................................................................CTAGGAAGATGTCGCCGGCGGCAAAT............................ 26 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................TTTCTAGGAAGATGTCGCC...................................... 19 0 1 2.00 2 1 1 0 0 0 0
..............TGCAGTGGCTGTGCCAGCAACAA............................................................................................................................................................. 23 0 1 2.00 2 1 1 0 0 0 0
...........................................................................................................................................TCTAGGAAGATGTCGCCGGCGGCAA.............................. 25 0 1 2.00 2 0 2 0 0 0 0
.......................................................................................................................................TTTTTCTAGGAAGATGTCGCCGGCG.................................. 25 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................................AAGATGTCGCCGGCGGCAAATTGGCAGC..................... 28 0 1 2.00 2 1 1 0 0 0 0
............................................CAACAGGTCAGTCTTTTAAGCAAGTGGC.......................................................................................................................... 28 1 1 2.00 2 2 0 0 0 0 0
........................................................................................................................................TGTTCTAGGAAGATGTCGCCGGCGG................................. 25 1 1 2.00 2 0 2 0 0 0 0
.........................................................................................................................................TTTCTATGAAGATGTCGCCGGCGGC................................ 25 1 1 2.00 2 0 2 0 0 0 0
...TTTGGGTTGCATGCAGTGGCTGTGCC..................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0
...............GCAGTGGCTGTGCCAGCAACAATG........................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................CAGCAGCGTCGGCCGAAGTTGG... 22 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................CAGCAGCGTCGGCCGAAGTTGGCGT 25 0 1 2.00 2 1 1 0 0 0 0
.......................................................................................................................................TTTTTCTAGGAAGATGTCGCCGGCGGCA............................... 28 0 1 2.00 2 2 0 0 0 0 0
..........TTCATGCAGTGGCTGTGCCAGCAA................................................................................................................................................................ 24 1 1 2.00 2 0 2 0 0 0 0
......................................................................................................................................................................TGGCAGCACCGTCGGCCGAAGTTGG... 25 1 1 2.00 2 2 0 0 0 0 0
..........................................TCAAACAGGTGAGTCTTTTAAGCAAG.............................................................................................................................. 26 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................................................................TCTAGGAAGATGTCGCCGGCGGCAAA............................. 26 0 1 2.00 2 0 2 0 0 0 0
.................................................................................................................................................AAGATGTCGCCGGCGGCAAATTGG......................... 24 0 1 2.00 2 2 0 0 0 0 0
..........................................TCCAACAGGTGAGTCTTTTAAGCAAGTGG........................................................................................................................... 29 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................TTTCTAGGAAGATGTCGCCGGC................................... 22 0 1 2.00 2 1 1 0 0 0 0
.........................................................................................................................................................GCCGGCGGCAAATTGGCAGCAGC.................. 23 0 1 2.00 2 1 1 0 0 0 0
......................................................................................................................................................GTCGCCGGCGGCAAATTGGC........................ 20 0 1 2.00 2 2 0 0 0 0 0
...................................................................................TATCCAATTGGAAGAAAAGGGGTCAT..................................................................................... 26 0 2 2.00 4 0 4 0 0 0 0
............................................................................................................................................................GGCGGCAAATTGGCAGCAGCGTC............... 23 0 1 2.00 2 0 2 0 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCCGGCGGCA............................... 22 0 1 2.00 2 2 0 0 0 0 0
............................................CAACAGGTGAGTCTTTTAAGCAAGTTG........................................................................................................................... 27 1 1 2.00 2 0 0 2 0 0 0
................CAGTGGCTGTGCCAGCAACAATGGC......................................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0
..............................................................................TCTTATATCCAATTGGAAGAAAAGGGGT........................................................................................ 28 0 2 2.00 4 0 3 1 0 0 0
..........TGCATGCACTGGCTGTGCCAGCAAC............................................................................................................................................................... 25 1 1 2.00 2 1 1 0 0 0 0
...................................................................................TATCCAATTGGAAGAAAAGGGGTCATT.................................................................................... 27 0 2 2.00 4 1 2 1 0 0 0
..........................................................................................................................................................................AGCAGCGTCGGCCGAAGTTGGC.. 22 0 1 2.00 2 0 1 1 0 0 0
.CATTTGGGTTGCATGCAGTGGCTGT........................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0
..............................GCAACAATGGCGTCCAACAGGTGAGT.......................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0
................................AACAATGGCGTCCAACAGGTGAGTCTT....................................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0
................................AACAATGGCGTCCAACAGGTGAGT.......................................................................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0
.............................................AACAGGTGGGTCTTTTAAGCAAGTGGC.......................................................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0
..............................................................................................................................................AGGAAGATGTCGCCGGCGGCAAATT........................... 25 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCCGGC................................... 18 0 1 2.00 2 1 1 0 0 0 0
............................................CAACAGGTGAGCCTTTTAAGCAAGTGG........................................................................................................................... 27 1 1 2.00 2 1 1 0 0 0 0
..........................................................................................................CATTTGTGCATAATATTCATGTTTATC............................................................. 27 0 2 1.50 3 0 2 1 0 0 0
....................................................................................................................TAATATTCATGTTTATCCATTTTTCTAG.................................................. 28 0 2 1.50 3 3 0 0 0 0 0
..............................................................................................................TGTGCATAATATTCATGTTTATCCATT......................................................... 27 0 2 1.50 3 0 3 0 0 0 0
................................................................................TTATATCCAATTGGAAGAAAAGGG.......................................................................................... 24 0 2 1.50 3 1 2 0 0 0 0
...........................................................................................TTGAAGAAAAGGGGTCATTTGTGC............................................................................... 24 1 2 1.50 3 0 3 0 0 0 0
..........................................................................................TTGGAAGAAAAGGGGTCATTTGTG................................................................................ 24 0 2 1.50 3 1 2 0 0 0 0
.................................................................................TGTATCCAATTGGAAGAAAAGGGGT........................................................................................ 25 1 2 1.50 3 0 3 0 0 0 0
...................................................................................TATCCAATTGGAAGAAAAGGGGTC....................................................................................... 24 0 2 1.50 3 0 3 0 0 0 0
.....................................................................................TCCAATTGGAAGAAAAGGGGTCATTTG.................................................................................. 27 0 3 1.33 4 4 0 0 0 0 0
.....................................................................................TCCAATTGGAAGAAAAGGGGTCAT..................................................................................... 24 0 4 1.25 5 0 5 0 0 0 0
...........................................................................................................................................................................GGAGCGTCGGACGAAGTTGGC.. 21 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................TGCATGTTTATCCATTTTTCTAGGAAGA............................................. 28 1 1 1.00 1 0 1 0 0 0 0
............................................TAACAGGTGAGTCTTTTAAGCAAGTGGC.......................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
.........................TGCCAGCACCAATGGCGTCCAACAGG............................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
............CATGCAGTGGCTGTGCCAGCAACAATG........................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................ATCCATTTTTCTAGGAAGATGTCGCC...................................... 26 0 1 1.00 1 1 0 0 0 0 0
..........TGCATGCGGTGGCTGTGCCCGCAAC............................................................................................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0
..........TGCTTGCAGTGGCTGTGCCAGCAAC............................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
.......................TGCGCCAGCAACAACGGCGTCCAACT................................................................................................................................................. 26 3 1 1.00 1 0 1 0 0 0 0
...........................................CCAACAGGTGAGTCTTTTAAGCAAGTGG........................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................TAGGAAGATGTCGCAGGCGGCAAATT........................... 26 1 1 1.00 1 0 1 0 0 0 0
.........................TTCCAGCAACAATGGCGTCCAACAGG............................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
.............................................AAAAGGTGAGTCTTTTAAGCAAGT............................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
............................................CAACAGGTCAGTCTTTTAAGCAAGTG............................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
..........TGCATGCCGTGGCTGTTCCATCA................................................................................................................................................................. 23 3 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................CAGCAGCGTCGGCCGAAGTTG.... 21 0 1 1.00 1 0 0 1 0 0 0
..............TGCAGTGGCTGTGCCAGCAACAATGGCGT....................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0
............................................CAACAGGTGAGTCTTTTAAGCAAGCG............................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
.............ATGCAGTGGCTGTGCCAGCAACAATG........................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...................................................TGAGTCTTTTAAGCAAGTGGCTAA....................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
..........................GCCAGCAACAATGGCGTCCAACAGG............................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............................................AAAAGGTGAGTCTTTTAAGCAAGTGGC.......................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
............................................................................TTTCTTATATCCAATTGGAAGAAAAGG........................................................................................... 27 0 2 1.00 2 1 1 0 0 0 0
..........................................TCCAACAGGTGAGTCTTTTAAGCAAGAA............................................................................................................................ 28 2 1 1.00 1 1 0 0 0 0 0
...................................AATTGCGTCCAACAGGTGAGTCTCC...................................................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTGGCGA 29 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................TTCCTAGGAAGATGTCGCCGGCGGCAAA............................. 28 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................AGCGTCGGCCGAAGTTGGCGT 21 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGCAT.............................. 27 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................AGGAAGATATCGCCGGCGGCAAATT........................... 25 1 1 1.00 1 1 0 0 0 0 0
.............................AGCTACAATGGCGTCCAACAGGGGAGTC......................................................................................................................................... 28 2 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................TGGCAGCAGCGTCGGCCAAAGTTGGCGT 28 1 1 1.00 1 1 0 0 0 0 0
................CAGTGGCTGTGCCAGCAACAATGGCG........................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
................................................................................TGATATCCAATTGGAAGAAAAGGGGT........................................................................................ 26 1 2 1.00 2 0 2 0 0 0 0
..................................................................................................................................................................AAATTGGCAGCAGCGTCGGCC........... 21 0 1 1.00 1 0 1 0 0 0 0
.......................................................TCTTTTAAGCAAGTGGCTAATTTTC.................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGCAA.............................. 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................TGATTTTCTTATATCCAATTGGAAGA................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................TGGGCAGCAGCGTCGGCCGAAGTGGGCGT 29 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................GTCTAGGAAGATGTCGCCGGCGGCA............................... 25 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTCTTTTAAGCAAGTGGCTAATT..................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................TGCCGCCGGCGGCAAATTGGCAGC..................... 24 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................GCAGCAGCGTCGGCCGAAGTTGG... 23 0 1 1.00 1 0 0 1 0 0 0
.................................................GTCGAGTCTTTTAAGCAAGTGGCTAAT...................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0
...............GCAGTGGCTGTGCCAGCAACAATGGCG........................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................TGCTAGGAAGATGTCGCCGGCGG................................. 23 1 1 1.00 1 0 1 0 0 0 0
..........TTCATGCAGTGGCTGTGCCAGAAAC............................................................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................TATCCATTTTTCTAGGAAGATGCCGCC...................................... 27 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................TTATAGGAAGATGTCGCCGGCGGCAAAT............................ 28 1 1 1.00 1 0 1 0 0 0 0
............................................CGACAGGTGAGTCTTTTAAGCAAGTGGC.......................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0

Anti-sense strand reads

CGTAAACCCAACGTACGTCACCGACACGGTCGTTGTTACCGCAGGTTGTCCACTCAGAAAATTCGTTCACCGATTAAAAGAATATAGGTTAACCTTCTTTTCCCCAGTAAACACGTATTATAAGTACAAATAGGTAAAAAGATCCTTCTACAGCGGCCGCCGTTTAACCGTCGTCGCAGCCGGCTTCAACCGCA
*****************************************************...........((...((((.((((.......((((.......))))..)))).))))))********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body
...........................GGTCGTTGTTACCGCAGGTTGTCCACT............................................................................................................................................ 27 0 1 21.00 21 21 0 0 0
...............................GTTGTTACCGCAGGTTGTCCACT............................................................................................................................................ 23 0 1 17.00 17 17 0 0 0
..............................CGTTGTTACCGCAGGTTGTCCACT............................................................................................................................................ 24 0 1 12.00 12 10 2 0 0
............................GTCGTTGTTACCGCAGGTTGTCCACT............................................................................................................................................ 26 0 1 7.00 7 6 1 0 0
...........................GGTCGTTGTTACCGCAGGTTGTCCA.............................................................................................................................................. 25 0 1 5.00 5 4 1 0 0
......................................................................................................CCCAGTAAACACGTATTATAAGTA.................................................................... 24 0 2 5.00 10 2 8 0 0
..........................CGGTCGTTGTTACCGCAGGTTGTCCACT............................................................................................................................................ 28 0 1 5.00 5 5 0 0 0
............................GTCGTTGTTACCGCAGGTTGTCCA.............................................................................................................................................. 24 0 1 5.00 5 5 0 0 0
..............................CGTTGTTACCGCAGGTTGTCCA.............................................................................................................................................. 22 0 1 5.00 5 2 3 0 0
.........................ACGGTCGTTGTTACCGCAGGTTGTCCACT............................................................................................................................................ 29 0 1 4.00 4 4 0 0 0
.............................TCGTTGTTACCGCAGGTTGTCCACT............................................................................................................................................ 25 0 1 4.00 4 2 1 0 1
..............................CGTTGTTACCGCAGGTTGTCCAC............................................................................................................................................. 23 0 1 4.00 4 4 0 0 0
................................TTGTTACCGCAGGTTGTCCACT............................................................................................................................................ 22 0 1 4.00 4 3 1 0 0
.......................................................................................................CCAGTAAACACGTATTATAAGTA.................................................................... 23 0 2 2.00 4 1 3 0 0
.............................TCGTTGTTACCGCAGGTTGTCCA.............................................................................................................................................. 23 0 1 2.00 2 2 0 0 0
.................................................................................................................................................................GTTTAACCGTCGTCGCAGCCGGCT......... 24 0 1 2.00 2 2 0 0 0
.....................................................................................................CCCCAGTAAACACGTATTATAAGTA.................................................................... 25 0 2 2.00 4 2 2 0 0
...............................GTTGTTACCGCAGGTTGTCCAC............................................................................................................................................. 22 0 1 2.00 2 2 0 0 0
.........................ACGGTCGTTGTTACCGCAGGTTGTCCA.............................................................................................................................................. 27 0 1 2.00 2 2 0 0 0
..............................CGTTGTTACCGCAGGGTGTCCACT............................................................................................................................................ 24 1 1 2.00 2 2 0 0 0
......................................CCGCAGGTTGTCCACTCAGAAAA..................................................................................................................................... 23 0 4 1.25 5 2 3 0 0
...........................GTTCTTTGTTACCGCAGGTTGTCCACT............................................................................................................................................ 27 2 1 1.00 1 0 0 1 0
......................................................................................................CCCAGTAAACACGTATTATAACTA.................................................................... 24 1 2 1.00 2 0 2 0 0
...........................................................................................ACCTTCTTTTCCCCAGTAAACACG............................................................................... 24 0 2 1.00 2 2 0 0 0
............................GTCGTTGTTACCGCAGGTTGTCCAC............................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................CCGTCGTCGCAGCCGGCTTCAACCGC. 26 0 1 1.00 1 1 0 0 0
................................................TCCACTCAGAAAATTCGTTCACC........................................................................................................................... 23 0 1 1.00 1 1 0 0 0
...........................GGTCGTTGTTACCGCAGGTTGTGC............................................................................................................................................... 24 1 1 1.00 1 0 1 0 0
...................................TTACCGCAGGTTGTCCACTCAGAAAAT.................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
................................TTGTTACCGCAGGTTGTCCAC............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
..............................CGTTTTTACCGCAGGTTGTCCA.............................................................................................................................................. 22 1 1 1.00 1 0 0 1 0
...............................GTTGTTACCGCAGGGTGTCCACT............................................................................................................................................ 23 1 1 1.00 1 1 0 0 0
......CCCAACGTACGTCACCGACAC....................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
................................................................GTTCACCGATTAAAAGAATATAGGTT........................................................................................................ 26 0 1 1.00 1 1 0 0 0
..........................CGGTCGTTGTTACCGCAGGTTGTCCAC............................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
.....................................................................CCGATTAAAAGAATATAGGTTAACCTT.................................................................................................. 27 0 1 1.00 1 0 1 0 0
..............................CGTTGTTACCGCAGGGTGCCCACT............................................................................................................................................ 24 2 1 1.00 1 1 0 0 0
...............................GTTGTTACCGCAGGTTGTCCA.............................................................................................................................................. 21 0 1 1.00 1 0 0 1 0
.................................TGTTACCGTAGGTTGTCGACTCAGAA....................................................................................................................................... 26 2 1 1.00 1 1 0 0 0
..................................................................................................................................................TCTACAGCGGCCGCCGTTTAA........................... 21 0 1 1.00 1 1 0 0 0
....................................TACCGCAGGTTGTCCACTCAGAAAA..................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
............................GTCGTTGTTACCGCAGGGTGTCCACT............................................................................................................................................ 26 1 1 1.00 1 1 0 0 0
............................TTCGTTGTTACCGCAGGTTGTCCA.............................................................................................................................................. 24 1 1 1.00 1 0 0 1 0
.....................................................................................................................................................ACAGCGGCCGCCGTTTAACC......................... 20 0 1 1.00 1 1 0 0 0
......................................................................................................................................................CAGCGGCCGCCGTTTAACCGTCG..................... 23 0 1 1.00 1 0 1 0 0
...........................GGTCGTTGTTACCCCAGGTTGTCCACT............................................................................................................................................ 27 1 1 1.00 1 1 0 0 0
...........................GGTCGTTGTTACCGCAGGGTGTCCACT............................................................................................................................................ 27 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................GGCCGCCGTTTAACCGTCGTCGCAG............... 25 0 1 1.00 1 1 0 0 0
...............................GTTGTTACCGCAGGTTGTCCACTC........................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
...........................GGTCGTTGTTACCTCAGGTTGTCCACT............................................................................................................................................ 27 1 1 1.00 1 1 0 0 0
..................................................................................................TTTCCCCAGTAAACACGTATTATA........................................................................ 24 0 2 1.00 2 2 0 0 0
...................................TTACCGCAGGTTGTCCACT............................................................................................................................................ 19 0 1 1.00 1 1 0 0 0
..............................CGTTGTTACCGCAGGTTGTCCGCT............................................................................................................................................ 24 1 1 1.00 1 0 0 1 0
CGTAAACCCAACGTACGTCACCGAC......................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
.ATAAACCCAACGTACGTCAC............................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0
.....................................ACCGCAGGTTGTCCACTCAGAAAAT.................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
........................CACGGTCGTTGTTACCGCAGGTTGT................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0
...........................GGTCGTTGTTACCGCAGGTTGTCCACTC........................................................................................................................................... 28 0 1 1.00 1 0 1 0 0
.....................................................................................................................................................................TACCGTCGTCGCAGCCAGCTTCAAC.... 25 2 1 1.00 1 1 0 0 0
..............................CGTTGTTACCGCAGGTTGGCCA.............................................................................................................................................. 22 1 1 1.00 1 0 1 0 0
.............................................................................................................................................ATCCTTCTACAGCGGCCGCCGT............................... 22 0 1 1.00 1 1 0 0 0
....................................TACCGCAGGTTGTCCACTCAGAAAAT.................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
...............................................................CGTTCACCGATTAAAAGAATATAGGTT........................................................................................................ 27 0 1 1.00 1 1 0 0 0
.......................................CGCAGGTTGTCCACTCAGAAAA..................................................................................................................................... 22 0 4 0.75 3 2 1 0 0
.......................................................................................................................................................................CCGTAGTCGCAGTCGGGTTCAA..... 22 3 2 0.50 1 0 1 0 0
..........................................................................................................................AGTACAAATAGGTAAAAAGATCC................................................. 23 0 2 0.50 1 0 0 1 0
.......................................................................................................CCAGTAAACACGTATTATATGTA.................................................................... 23 1 2 0.50 1 0 1 0 0
...................................................................................................TTCCCCAGTAAACACGTATTATAAGT..................................................................... 26 0 2 0.50 1 0 1 0 0
............................................................................................CCTTCTTTTCCCCAGTAAACACG............................................................................... 23 0 2 0.50 1 0 1 0 0
.......................................................................................GTTAACCTTCTTTTCCCCAGTAAACACG............................................................................... 28 0 2 0.50 1 1 0 0 0
...................................................................................................TTCCCCAGTAAACACGTATTATAAGTA.................................................................... 27 0 2 0.50 1 1 0 0 0
.....................................................................................................CCCCAGTAAACACGTATTATA........................................................................ 21 0 2 0.50 1 0 1 0 0
...................................................................................................TTCCCCAGTAAACACGTATTATAAGTAG................................................................... 28 1 2 0.50 1 1 0 0 0
......................................................................................................CCCAGTAAACACGTATTATAA....................................................................... 21 0 2 0.50 1 0 1 0 0
....................................................................................................TCCCCAGTAAACACGTATTATAAGGA.................................................................... 26 1 2 0.50 1 0 1 0 0
..........................................................................................AACCTTCTTTTCCCCAGTAAACACG............................................................................... 25 0 2 0.50 1 1 0 0 0
.................................................................................................TTTTCCCCAGTAAACACGTATTATA........................................................................ 25 0 2 0.50 1 1 0 0 0
.......................................................................................................CCAGTAAACACGTATTATAAGGA.................................................................... 23 1 2 0.50 1 0 1 0 0
........................................................................................TTAACCTTCTTTTCCCCAGTAAA................................................................................... 23 0 3 0.33 1 1 0 0 0
.......................................CGCAGGTTGTCCACTCGGAAAA..................................................................................................................................... 22 1 4 0.25 1 0 1 0 0
......................................CAGCAGGTTGTCCACTCAGAAAA..................................................................................................................................... 23 1 4 0.25 1 0 1 0 0
.......................................CGCAGGTTGTCCACTCAGAAAAT.................................................................................................................................... 23 0 4 0.25 1 0 1 0 0
.......................................CGCAGGTTGTCCACTCAGAAAATT................................................................................................................................... 24 0 4 0.25 1 0 1 0 0
..................................................................CCACCGATTAAAAGAATATAGGTTAAC..................................................................................................... 27 1 4 0.25 1 0 1 0 0
......................................CCGCAGGTTGTCCACTCAGAAAAT.................................................................................................................................... 24 0 4 0.25 1 0 1 0 0
.............................................................................................CTTCAATGCCCCAGTAAA................................................................................... 18 3 20 0.15 3 3 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13337:771-964 - dan_2304 GCAT--------------TTGGG---TT--GC---A-TGCAGTGGCTGTGCCAGCAACAATGGCGTCCAACAGGTGAGTCTTTTAAGCAAGTGGCTAATTTTCTTATATCCAATTGGAAGAAAAGGGGTC-------AT-TTGT--GCATAATATTCATGTTTATCCATTTTTCTAGGAAGATGTCGCCGGCGGCAAATTGGCAGCAGCGTCGGCCGAAGTTGGCGT
droKik1 scf7180000302281:112574-112642 + TAAA--------------TAA---GTTT--AA---G-TTAAACATAAAAAAAAACAAA---------------------------------------------------------------------AAA-------AT-CTC-A----------AAATA--------------------------------------TTACCAGA--------A-ACTATAAAAAA
droEle1 scf7180000491273:1962482-1962545 + AATA--------------A-----TT---------------------------------------------------------------------------TCTTATAAAAAATGTATAAAATAAAAGTA-------AG-TTAC-----------AAATA------------------------------------------TGTA--------TATGCATTGAAAA
droRho1 scf7180000774218:16447-16482 + GGAA--------------TTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTA-TTTGGCAGA--------A-A-TCGCCAGAA
droTak1 scf7180000415705:197916-197977 + TATT--------------AATAATAA-----TTGTG-AAA---------TAAAATAAA-----------------------------------------------------------------------AAAATAGAACAT---------------------------------------------------------TTCACAGA--------ATCCCAAGAAAAA
droEug1 scf7180000408686:845-909 + AATA--------------TAAAA---TATAAAATACAAA----------TATAAAATA----------------------------------------------------------------------TAAA-TATAAATA--T-----------AAATA------------------------------------------TAAA--------T-ATAAATATAAA
droPer2 scaffold_2:886722-886728 - TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGT
droWil2 scf2_1100000004909:5809431-5809488 + AGAA--------------AAGTAAAT---------------------------------------------------------------------------TTAAATAAAAAGTCAAAAGAACAAAAATG-------AC-AATA------------------------------------------------------------------------GAATATGTACA
droVir3 scaffold_12855:5194127-5194202 + TAAA--------------TATAT-GTTT--AT---G-ATATCT-----------------------------------ACTGTAAAGTAGGTAAATTAATTTTAAATATATACTTA-------------------------------------------------------------------------------------ACAGA--------T-A-AAATAGTAT
droMoj3 scaffold_6540:32487949-32488031 + AAGT--------------TAACAAAT---------------------------------------------------------------------------TTTGGCAACAGACGAAAAATGCTAAGAGA-------AATTT-TCA---------AGGCG--------------------------------------CACACAAAAGTATGAAAAAGGGTAGGGGC
droGri2 scaffold_14853:8479305-8479382 + TTGTAGCTGATTGTTGATCAATT---AATTATATATTAAA---------TCAGAG--------------------------------------A---------------------------------ACAAA--------CTT-A----------AAATA--------------------------------------TTAACAAA--------A-ACAAAAAAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GCAT--------------TTGGG---TT--GC---A-TGCAGTGGCTGTGCCAGCAACAATGGCGTCCAACAGGTGAGTCTTTTAAGCAAGTGGCTAATTTTCTTATATCCAATTGGAAGAAAAGGGGTC-------AT-TTGT--GCATAATATTCATGTTTATCCATTTTTCTAGGAAGATGTCGCCGGCGGCAAATTGGCAGCAGCGTCGGCCGAAGTTGGCGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................CAACAGGTGAGTCTTTTAAGCAAGTGGC....................................................................................................................................281211.00211147604000
...................................................................CAACAGGTGAGTCTTTTAAGCAAGTGG.....................................................................................................................................271189.00189130544010
...........................T--GC---A-TGCAGTGGCTGTGCCAGCAAC.........................................................................................................................................................................251107.0010727800000
...................................................................CAACAGGTGAGTCTTTTAAGCAAGTG......................................................................................................................................26157.005738136000
.................................................................TCCAACAGGTGAGTCTTTTAAGCAAG........................................................................................................................................26143.004330112000
...................................................................CAACAGGTGAGTCTTTTAAGCAAGT.......................................................................................................................................25137.0037131410000
..............................................................................................................................................................................TAGGAAGATGTCGCCGGCGGCAAAT............................25135.00352870000
....................................................................AACAGGTGAGTCTTTTAAGCAAGTGG.....................................................................................................................................26132.00322651000
....................................................................................................................................................................................GATGTCGCCGGCGGCAAATTGGCAGC.....................26129.00296221000
....................................................................AACAGGTGAGTCTTTTAAGCAAGTGGC....................................................................................................................................27125.00251681000
................................................TGCCAGCAACAATGGCGTCCAACAGG.........................................................................................................................................................26125.00251663000
...........................................................................................................................................................................TTCTAGGAAGATGTCGCCGGCGGC................................24124.002413110000
...........................T--GC---A-TGCAGTGGCTGTGCCAGCAACA........................................................................................................................................................................26124.00241950000
.....................................TGCAGTGGCTGTGCCAGCAACAATGG....................................................................................................................................................................26124.00242040000
..........................................................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGC................................25123.00235171000
...........................................................................................................................................................................TTCTAGGAAGATGTCGCCGGCGG.................................23123.00231940000
...................................................................CAACAGGTGAGTCTTTTAAGCAAG........................................................................................................................................24122.00221380001
......................................................................................................................................................................................TGTCGCCGGCGGCAAATTGGCAGC.....................24122.00226151000
....................................................................................................................................................................TCCATTTTTCTAGGAAGATGTCGCCGGC...................................28122.00221750000
........................................................................................................TATATCCAATTGGAAGAAAAGGGGT..................................................................................................25221.50434336000
..............................................................................................................................................................................TAGGAAGATGTCGCCGGCGGCAAATT...........................26119.00191630000
....................................................................................................................................................................TCCATTTTTCTAGGAAGATGTCGCCGG....................................27118.00181260000
...................TGGG---TT--GC---A-TGCAGTGGCTGTGCCAGC............................................................................................................................................................................27117.00173140000
.......................................................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTG....24117.0017971000
....................................................................................................................................................................TCCATTTTTCTAGGAAGATGTCGCC......................................25117.00171160000
.......................................................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTGG...25116.00161060000
........................................................................................................TATATCCAATTGGAAGAAAAGGGGTC-------..........................................................................................26215.00304215000
......................................................................CAGGTGAGTCTTTTAAGCAAGTGGC....................................................................................................................................25114.0014391100
........................................................................................................................................................................TTTTTCTAGGAAGATGTCGCCGGCGGC................................27114.0014590000
................................................................................................................................................................................................GGCAAATTGGCAGCAGCGTCGGC............23114.0014491000
...........................T--GC---A-TGCAGTGGCTGTGCCAGC............................................................................................................................................................................22114.00143110000
........................................................................................................................................................................TTTTTCTAGGAAGATGTCGCCGGCGG.................................26114.00141130000
..........................TT--GC---A-TGCAGTGGCTGTGCCAGCAAC.........................................................................................................................................................................26114.0014770000
........................................................................................................TATATCCAATTGGAAGAAAAGGGG...................................................................................................24214.00283178000
..............................................................................................................................................................................TAGGAAGATGTCGCCGGCGGCAAATTG..........................27113.00131210000
..........................................................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGG.................................24113.00131030000
.........................................................................................................................................................................TTTTCTAGGAAGATGTCGCCGGCGG.................................25113.00131300000
...........................T--GC---A-TGCAGTGGCTGTGCCAGCAACAA.......................................................................................................................................................................27112.00121020000
...........................T--GC---A-TGCAGTGGCTGTGCCAGCA...........................................................................................................................................................................23112.0012480000
.........................................................................................................................................................................TTTTCTAGGAAGATGTCGCCGGCGGC................................26112.0012390000
......................................................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTGG...26111.00111010000
.....................................TGCAGTGGCTGTGCCAGCAACAATG.....................................................................................................................................................................25111.00111010000
............................................................................................................................................................................TCTAGGAAGATGTCGCCGGCGGCAAAT............................27110.0010730000
..................TTGGG---TT--GC---A-TGCAGTGGCTGTGCCAGC............................................................................................................................................................................28110.0010460000
................................................................................................................................................................................................GGCAAATTGGCAGCAGCGTCGGCCGA.........2619.009360000
......................................................................................................................................................................CATTTTTCTAGGAAGATGTCGCCGG....................................2519.009630000
.................................................................................................................................................................................GAAGATGTCGCCGGCGGCAAATTGGC........................2619.009710010
...........................................................................................................................................................................TTCTAGGAAGATGTCGCCGGCGGCAAA.............................2718.008710000
..........................TT--GC---A-TGCAGTGGCTGTGCCAGC............................................................................................................................................................................2318.008080000
...........................................................................................................................................................................TTCTAGGAAGATGTCGCCGGCGGCAAAT............................2818.008620000
.................................................................................................................................................................................GAAGATGTCGCCGGCGGCAAATTGG.........................2518.008422000
.................................................................................................................TTGGAAGAAAAGGGGTC-------AT-TTGT--GC...............................................................................2527.50152103000
.....................................................................................................................................................TAATATTCATGTTTATCCATTTTTC.....................................................2527.00141130000
................................................................................................................................................................................................GGCAAATTGGCAGCAGCGTCGGCC...........2417.007250000
............................................................................................................................................................................TCTAGGAAGATGTCGCCGGCGGC................................2317.007430000
...........................................................................................................................................................................TTCTAGGAAGATGTCGCCGGCGGCA...............................2517.007700000
........................................................................................................................................................................................TCGCCGGCGGCAAATTGGCAGCAGC..................2517.007250000
.........................................................................................................................................................................TTTTCTAGGAAGATGTCGCCGGC...................................2317.007421000
.....................................TGCAGTGGCTGTGCCAGCAACAATGGC...................................................................................................................................................................2717.007430000
......................................................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTGGC..2717.007340000
...........................T--GC---A-TGCAGTGGCTGTGCCAGCAA..........................................................................................................................................................................2417.007430000
......................................................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTGGCGT2917.007430000
..........................................................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGCA...............................2616.006510000
...T--------------TTGGG---TT--GC---A-TGCAGTGGCTGT..................................................................................................................................................................................2316.006330000
..............................................TGTGCCAGCAACAATGGCGTCCAACAGG.........................................................................................................................................................2816.006600000
....................................................................................................................................................................................GATGTCGCCGGCGGCAAATTGGCAGCA....................2716.006510000
........................................................................................................................................................................TTTTTCTAGGAAGATGTCGCCGGC...................................2416.006420000
..................................................................................................................................................................TATCCATTTTTCTAGGAAGATGTCGCC......................................2716.006060000
..............................................................................................................................................................................TAGGAAGATGTCGCCGGCGGCAAA.............................2416.006330000
.......................................................AACAATGGCGTCCAACAGGTGAGTC...................................................................................................................................................2516.006042000
........................................................................................................TATATCCAATTGGAAGAAAAGGGGC..................................................................................................2525.50110110000
.......................................CAGTGGCTGTGCCAGCAACAATGG....................................................................................................................................................................2415.005500000
.......................................................................................................TTATATCCAATTGGAAGAAAAGGGG...................................................................................................2525.0010190000
......................................................................................................................................................................CATTTTTCTAGGAAGATGTCGCCGGC...................................2615.005302000
..........................................................................TGAGTCTTTTAAGCAAGTGGCTAATT...............................................................................................................................2615.005140000
................................................TGCCAGCAACAATGGCGTCCAACAG..........................................................................................................................................................2515.005320000
...................................................................................................................................................................................AGATGTCGCCGGCGGCAAATTGGCAGC.....................2715.005320000
....................................................................................................................................................................................GATGTCGCCGGCGGCAAATTGGCAG......................2515.005410000
.................................................................TCCAACAGGTGAGTCTTTTAAGCAAGT.......................................................................................................................................2715.005050000
......................................................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTGGCG.2815.005410000
.......................................................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTGGCG.2715.005410000
..............................GC---A-TGCAGTGGCTGTGCCAGCAAC.........................................................................................................................................................................2415.005500000
..................TTGGG---TT--GC---A-TGCAGTGGCTGTGC................................................................................................................................................................................2415.005230000
..........................................................................TGAGTCTTTTAAGCAAGTGGCTAAT................................................................................................................................2515.005230000
......................................................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTT.....2415.005050000
.......................................................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTGGCGT2815.005410000
....................................................................AACAGGTGAGTCTTTTAAGCAAGTG......................................................................................................................................2515.005500000
...T--------------TTGGG---TT--GC---A-TGCAGTGGCTGTGCCAGC............................................................................................................................................................................2915.005050000
...T--------------TTGGG---TT--GC---A-TGCAGTGGCTGTGC................................................................................................................................................................................2515.005230000
.......................................................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTGGC..2615.005050000
...................TGGG---TT--GC---A-TGCAGTGGCTGTGC................................................................................................................................................................................2315.005230000
.................................................................................................................................................................................................GCAAATTGGCAGCAGCGTCGGC............2215.005050000
......................................................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGT......2315.005140000
.........................................................................................................................................................................TTTTCTAGGAAGATGTCGCCGG....................................2215.005410000
.................................................................................................................................................................................................GCAAATTGGCAGCAGCGTCGGCCGAAG.......2714.004220000
GCAT--------------TTGGG---TT--GC---A-TGCAGTGGCTG...................................................................................................................................................................................2514.004310000
.....................................TGCAGTGGCTGTGCCAGCAACAATGGCG..................................................................................................................................................................2814.004400000
....................................................................................................................................................................................GATGTCGCCGGCGGCAAATTGGC........................2314.004130000
.................................................................................................................................................................................................GCAAATTGGCAGCAGCGTCGGCCGA.........2514.004220000
...T--------------TTGGG---TT--GC---A-TGCAGTGGCTG...................................................................................................................................................................................2214.004121000
.................................................................................................................................................................................................GCAAATTGGCAGCAGCGTCGGCC...........2314.004040000
...........................................................................................................................................................................TTCTAGGAAGATGTCGCCGGCG..................................2214.004400000
..........................................................................................................................................................................................................CAGCAGCGTCGGCCGAAGTTGGC..2314.004040000
..............................................................................................................................................................................TAGGAAGATGTCGCCGGCG..................................1914.004310000
.............................................................................................................................................................................................GGCGGCAAATTGGCAGCAGCGTCGGCC...........2714.004130000
.........................................................................................................................................................................TTTTCTAGGAAGATGTCGCCGGCGGCA...............................2714.004400000
........................................................................................................................................................................................TCGCCGGCGGCAAATTGGCAGCAG...................2414.004211000
..............................................................................................................................................................................................GCGGCAAATTGGCAGCAGCGTCGGCC...........2614.004220000
......................................................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTG....2514.004400000
............................................................................................................................................................................TCTAGGAAGATGTCGCCGGCGG.................................2214.004400000
................................................................................................................................................................TTTATCCATTTTTCTAGGAAGATGTCGCC......................................2914.004040000
........................................................................................................................................................................TTTTTCTAGGAAGATGTCGCCGG....................................2314.004211000
............................................................................................................TCCAATTGGAAGAAAAGGGGTC-------AT-T......................................................................................2533.6711380000
........................................................................................................TATATCCAATTGGAAGAAAAGGGGTC-------AT-.......................................................................................2823.507331000
........................................................................................................TATATCCAATTGGAAGAAAAGGG....................................................................................................2323.507331000
...........................T--GC---A-TGCAGTGGCTGTGCCAGCAACAAT......................................................................................................................................................................2813.003300000
......................................................................................................................................................................................TGTCGCCGGCGGCAAATTGGCA.......................2213.003120000
..............................GC---A-TGCAGTGGCTGTGCCAGCA...........................................................................................................................................................................2213.003120000
..............................................................................................................................................................................TAGGAAGATGTCGCCGGCGGCAAATTGG.........................2813.003300000
.........................................GTGGCTGTGCCAGCAACAATGGCGTC................................................................................................................................................................2613.003030000
......................................................................................................................................................................................TGTCGCCGGCGGCAAATTGGCAG......................2313.003300000
..........................TT--GC---A-TGCAGTGGCTGTGCCAGCA...........................................................................................................................................................................2413.003030000
..........................................................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGCAAA.............................2813.003210000
..............................................................................................................................................................................TAGGAAGATGTCGCCGGCGG.................................2013.003300000
....................................................................................................................................................................TCCATTTTTCTAGGAAGATGTCGCCGGCG..................................2913.003300000
......................................GCAGTGGCTGTGCCAGCAACAATGG....................................................................................................................................................................2513.003300000
.............................................................................................................................................................................................GGCGGCAAATTGGCAGCAGCGTCGGC............2613.003030000
.........................................................................................................................................................................................................GCAGCAGCGTCGGCCGAAGTTGGC..2413.003120000
.................................................................................................................................................................................GAAGATGTCGCCGGCGGCAAATTG..........................2413.003102000
..................................................................CCAACAGGTGAGTCTTTTAAGCAAG........................................................................................................................................2513.003300000
................................................................................................................................................................................................GGCAAATTGGCAGCAGCGTCGG.............2213.003111000
......................................................................................................................................................................................TGTCGCCGGCGGCAAATTGGCAGCAG...................2613.003300000
............................................................................................................................................................................................................GCAGCGTCGGCCGAAGTTGGCGT2313.003111000
.......................................................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTTGGCGC2813.003030000
...................................................................CAACAGGTGAGTCTTTTAAGCAAGTGT.....................................................................................................................................2713.003120000
........................................................................................................................................................................TTTTTCTAGGAAGATGTCGCC......................................2113.003030000
..............................................................................................................................................................................TAGGAAGATGTCGCCGGCGGCAA..............................2313.003210000
......................................................................................................................................................................................TGTCGCCGGCGGCAAATTGGCAGCA....................2513.003300000
.............................................................................................................................................................................................GGCGGCAAATTGGCAGCAGCGTCGG.............2513.003300000
.........................................................................................................................................................................TTTTCTAGGAAGATGTCGCC......................................2013.003030000
................................................................GTCCAACAGGTGAGTCTTTTAAGCAAG........................................................................................................................................2713.003300000
.................................................................TCCAACAGGTGAGTCTTTTAAGCAAGTG......................................................................................................................................2813.003300000
..........................................................................................................................................................................TTTCTAGGAAGATGTCGCCGGCG..................................2313.003300000
............................................................TGGCGTCCAACAGGTGAGTCTTTTAAG............................................................................................................................................2713.003300000
.......................................................................................................TTATATCCAATTGGAAGAAAAGGGGT..................................................................................................2623.006060000
......................................................................................................................................................................CATTTTTCTAGGAAGATGTCGCC......................................2313.003030000
.......................................................AACAATGGCGTCCAACAGGTGAGTCT..................................................................................................................................................2613.003210000
................................................TGCCAGCAACAATGGCGTCCAACAGGT........................................................................................................................................................2713.003210000
..............................................................................................................................................................................TAGGAAGATGTCGCCGGCGGC................................2113.003120000
................................................TGCCAGCAACAATGGCGTCCAACA...........................................................................................................................................................2413.003210000
..........................................................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGCAAAT............................2913.003300000
..............................................................................................................................................................................................GCGGCAAATTGGCAGCAGCGTCGGC............2513.003030000
...........................................................................................................................................................TCATGTTTATCCATTTTTCTAGGAAGA.............................................2713.003030000
.......................................................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGT......2213.003030000
...............................................................................................TAATTTTCTTATATCCAATTGGAAGA..........................................................................................................2613.003120000
..........................................................................................................................................................TTCATGTTTATCCATTTTTCTAGGAA...............................................2622.505140000
.....................................................................................................TCTTATATCCAATTGGAAGAAAAGGGG...................................................................................................2722.505221000
...........................................................................................................................................................TCATGTTTATCCATTTTTCTAGGAA...............................................2522.505230000
...............................................................................................TAATTTTCTTATATCCAATTGGAAGAAA........................................................................................................2812.002110000
...T--------------TTGGG---TT--GC---A-TGCAGTGGCTGC..................................................................................................................................................................................2312.002020000
............................................................................................................................................................................................................GCAGCGTCGGCCGAAGTTGGC..2112.002020000
...........................................................................................................................................................................TTCTAGGAAGATGTCGCCGG....................................2012.002200000
.....................................................................................................................................................................CCATTTTTCTAGGAAGATGTCGCCGG....................................2612.002200000
........................................................................................................TATATCCAATTGGAAGAAAAGGGGTC-------AT-T......................................................................................2922.004310000
....................................................................................................................................................................................GATGTCGCCGGCGGCAAATTGGCA.......................2412.002200000
.................................................................................................................................................................................................GCAAATTGGCAGCAGCGTCGGCCGAA........2612.002110000
.......................................................................................................................................................................................................TGGCAGCAGCGTCGGCCGAAGTT.....2312.002020000
...T--------------TTGGG---TT--GC---A-TGCAGTGGCTGTG.................................................................................................................................................................................2412.002110000
.....................................................GCAACAATGGCGTCCAACAGGTGAGTCT..................................................................................................................................................2812.002020000
...................................................................CAACAGGTGAGTCTTTTAAGCAAGC.......................................................................................................................................2512.002020000
..........................................................................................................................................................TTCATGTTTATCCATTTTTCTAGGAAGA.............................................2812.002200000
............................................................................................................................................................................TCTAGGAAGATGTCGCCGGCGGCAAATT...........................2812.002200000
...........................................................................GAGTCTTTTAAGCAAGTGGC....................................................................................................................................2012.002200000
...................TGGG---TT--GC---A-TGCAGTGGCTGTGCCAGCA...........................................................................................................................................................................2812.002020000
...................TGGG---TT--GC---A-TGCAGTGGCTGTG.................................................................................................................................................................................2212.002020000
...........................................................................................................................................................................TTCTAGGAAGATGTCGCCGGC...................................2112.002200000
......................................................CAACAATGGCGTCCAACAGGTGAGTC...................................................................................................................................................2612.002011000
.............................................................................................................................................................................CTAGGAAGATGTCGCCGGCGGCAAAT............................2612.002200000
..........................................................................................................................................................................TTTCTAGGAAGATGTCGCC......................................1912.002110000
.....................................TGCAGTGGCTGTGCCAGCAACAA.......................................................................................................................................................................2312.002110000
............................................................................................................................................................................TCTAGGAAGATGTCGCCGGCGGCAA..............................2512.002020000
........................................................................................................................................................................TTTTTCTAGGAAGATGTCGCCGGCG..................................2512.002200000
..................................................................................................................................................................................AAGATGTCGCCGGCGGCAAATTGGCAGC.....................2812.002110000
...T--------------TTGGG---TT--GC---A-TGCAGTGGCTGTGCC...............................................................................................................................................................................2612.002110000
......................................GCAGTGGCTGTGCCAGCAACAATG.....................................................................................................................................................................2412.002200000
..........................................................................................................................................................................................................CAGCAGCGTCGGCCGAAGTTGG...2212.002200000
..........................................................................................................................................................................................................CAGCAGCGTCGGCCGAAGTTGGCGT2512.002110000
........................................................................................................................................................................TTTTTCTAGGAAGATGTCGCCGGCGGCA...............................2812.002200000
............................................................................................................................................................................TCTAGGAAGATGTCGCCGGCGGCAAA.............................2612.002020000
..................................................................................................................................................................................AAGATGTCGCCGGCGGCAAATTGG.........................2412.002200000
.................................................................TCCAACAGGTGAGTCTTTTAAGCAAGTGG.....................................................................................................................................2912.002200000
..........................................................................................................................................................................TTTCTAGGAAGATGTCGCCGGC...................................2212.002110000
..........................................................................................................................................................................................GCCGGCGGCAAATTGGCAGCAGC..................2312.002110000
.......................................................................................................................................................................................GTCGCCGGCGGCAAATTGGC........................2012.002200000
..........................................................................................................TATCCAATTGGAAGAAAAGGGGTC-------AT-.......................................................................................2622.004040000
.............................................................................................................................................................................................GGCGGCAAATTGGCAGCAGCGTC...............2312.002020000
..............................................................................................................................................................................TAGGAAGATGTCGCCGGCGGCA...............................2212.002200000
.......................................CAGTGGCTGTGCCAGCAACAATGGC...................................................................................................................................................................2512.002020000
.....................................................................................................TCTTATATCCAATTGGAAGAAAAGGGGT..................................................................................................2822.004031000
..........................................................................................................TATCCAATTGGAAGAAAAGGGGTC-------AT-T......................................................................................2722.004121000
...........................................................................................................................................................................................................AGCAGCGTCGGCCGAAGTTGGC..2212.002011000
.CAT--------------TTGGG---TT--GC---A-TGCAGTGGCTGT..................................................................................................................................................................................2512.002200000
.....................................................GCAACAATGGCGTCCAACAGGTGAGT....................................................................................................................................................2612.002020000
.......................................................AACAATGGCGTCCAACAGGTGAGTCTT.................................................................................................................................................2712.002020000
.......................................................AACAATGGCGTCCAACAGGTGAGT....................................................................................................................................................2412.002020000
...............................................................................................................................................................................AGGAAGATGTCGCCGGCGGCAAATT...........................2512.002200000
..............................................................................................................................................................................TAGGAAGATGTCGCCGGC...................................1812.002110000
.................................................................................................................................C-------AT-TTGT--GCATAATATTCATGTTTATC.............................................................2721.503021000
.....................................................................................................................................................TAATATTCATGTTTATCCATTTTTCTAG..................................................2821.503300000
.............................................................................................................................................TGT--GCATAATATTCATGTTTATCCATT.........................................................2721.503030000
.......................................................................................................TTATATCCAATTGGAAGAAAAGGG....................................................................................................2421.503120000
.................................................................................................................TTGGAAGAAAAGGGGTC-------AT-TTGT--G................................................................................2421.503120000
..........................................................................................................TATCCAATTGGAAGAAAAGGGGTC-------..........................................................................................2421.503030000
............................................................................................................TCCAATTGGAAGAAAAGGGGTC-------AT-TTG....................................................................................2731.334400000
............................................................................................................TCCAATTGGAAGAAAAGGGGTC-------AT-.......................................................................................2441.255050000
...............................C---A-TGCAGTGGCTGTGCCAGCAACAATG.....................................................................................................................................................................2711.001100000
...................................................................................................................................................................ATCCATTTTTCTAGGAAGATGTCGCC......................................2611.001100000
..................................................................CCAACAGGTGAGTCTTTTAAGCAAGTGG.....................................................................................................................................2811.001100000
..........................................................................................................................................................................................................CAGCAGCGTCGGCCGAAGTTG....2111.001001000
.....................................TGCAGTGGCTGTGCCAGCAACAATGGCGT.................................................................................................................................................................2911.001010000
...................................A-TGCAGTGGCTGTGCCAGCAACAATG.....................................................................................................................................................................2611.001100000
..........................................................................TGAGTCTTTTAAGCAAGTGGCTAA.................................................................................................................................2411.001010000
.................................................GCCAGCAACAATGGCGTCCAACAGG.........................................................................................................................................................2511.001100000
...................................................................................................TTTCTTATATCCAATTGGAAGAAAAGG.....................................................................................................2721.002110000
.................................................................TCCAACAGGTGAGTCTTTTAAGCAAGAA......................................................................................................................................2811.001100000
......................................................................................................................................................................................................TTGGCAGCAGCGTCGGCCGAAGTTGGCGA2911.001010000
..............................................................................................................................................................................................................AGCGTCGGCCGAAGTTGGCGT2111.001010000
..........................................................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGCAT..............................2711.001100000
.......................................CAGTGGCTGTGCCAGCAACAATGGCG..................................................................................................................................................................2611.001100000
...................................................................................................................................................................................................AAATTGGCAGCAGCGTCGGCC...........2111.001010000
..............................................................................TCTTTTAAGCAAGTGGCTAATTTTC............................................................................................................................2511.001010000
..........................................................................................................................................................................TTTCTAGGAAGATGTCGCCGGCGGCAA..............................2711.001100000
.........................................................................GTGAGTCTTTTAAGCAAGTGGCTAATT...............................................................................................................................2711.001100000
.........................................................................................................................................................................................................GCAGCAGCGTCGGCCGAAGTTGG...2311.001001000
......................................GCAGTGGCTGTGCCAGCAACAATGGCG..................................................................................................................................................................2711.001100000
droKik1
TAAA--------------TAA---GTTT--AA---G-TTAAACATAAAAAAAAACAAA---------------------------------------------------------------------AAA-------AT-CTC-A----------AAATA--------------------------------------TTACCAGA--------A-ACTATAAAAAASizeHit CountTotal NormTotal
No Reads
droEle1
AATA--------------A-----TT---------------------------------------------------------------------------TCTTATAAAAAATGTATAAAATAAAAGTA-------AG-TTAC-----------AAATA------------------------------------------TGTA--------TATGCATTGAAAASizeHit CountTotal NormTotal
No Reads
droRho1
GGAA--------------TTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGTA-TTTGGCAGA--------A-A-TCGCCAGAASizeHit CountTotal NormTotal
No Reads
droTak1
TATT--------------AATAATAA-----TTGTG-AAA---------TAAAATAAA-----------------------------------------------------------------------AAAATAGAACAT---------------------------------------------------------TTCACAGA--------ATCCCAAGAAAAASizeHit CountTotal NormTotal
No Reads
droEug1
AATA--------------TAAAA---TATAAAATACAAA----------TATAAAATA----------------------------------------------------------------------TAAA-TATAAATA--T-----------AAATA------------------------------------------TAAA--------T-ATAAATATAAASizeHit CountTotal NormTotal
No Reads
droPer2
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGAA--------------AAGTAAAT---------------------------------------------------------------------------TTAAATAAAAAGTCAAAAGAACAAAAATG-------AC-AATA------------------------------------------------------------------------GAATATGTACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TAAA--------------TATAT-GTTT--AT---G-ATATCT-----------------------------------ACTGTAAAGTAGGTAAATTAATTTTAAATATATACTTA-------------------------------------------------------------------------------------ACAGA--------T-A-AAATAGTATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AAGT--------------TAACAAAT---------------------------------------------------------------------------TTTGGCAACAGACGAAAAATGCTAAGAGA-------AATTT-TCA---------AGGCG--------------------------------------CACACAAAAGTATGAAAAAGGGTAGGGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTGTAGCTGATTGTTGATCAATT---AATTATATATTAAA---------TCAGAG--------------------------------------A---------------------------------ACAAA--------CTT-A----------AAATA--------------------------------------TTAACAAA--------A-ACAAAAAAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:21 AM