ID:

dan_2300

 Coordinate:

scaffold_13335:3212275-3212425 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.0 -6.5

Flybase annnotation

CDS [Dana\GF19570-cds]; exon [dana_GLEANR_21637:8]; intron [Dana\GF19570-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo+
mature
  1. scaffold_10513:134928-134948 +
  2. scaffold_12905:345228-345248 +
  3. scaffold_12947:511047-511067 +
  4. scaffold_13032:47573-47593 +
  5. scaffold_13034:633881-633901 +
  6. scaffold_13034:648912-648932 +
  7. scaffold_13034:741924-741944 +
  8. scaffold_13099:1133638-1133658 +
  9. scaffold_13099:1534723-1534743 +
  10. scaffold_13228:181142-181162 +
  11. scaffold_13228:844523-844543 +
  12. scaffold_13250:3347990-3348010 +
  13. scaffold_13266:19797419-19797439 +
  14. dan_2300  scaffold_13335:3212310-3212330 +
  15. scaffold_13337:22369729-22369749 +
  16. scaffold_13339:442320-442340 +
  17. scaffold_13339:1225751-1225771 +
  18. dan_3340  scaffold_13417:5089239-5089259 +
  19. scaffold_13499:841081-841101 +
  20. scaffold_13767:719719-719739 +
  21. scaffold_5678:496-516 -
  22. scaffold_9412:1159-1179 -
  23. scaffold_9492:339-359 -
  24. scaffold_9919:1487-1507 -
  25. scaffold_10213:7903-7923 -
  26. scaffold_10384:5619-5639 -
  27. scaffold_12586:50557-50577 -
  28. dan_437  scaffold_12911:4644331-4644351 -
  29. scaffold_12943:169677-169697 -
  30. scaffold_12984:427933-427953 -
  31. scaffold_13099:3258039-3258059 -
  32. scaffold_13239:99654-99674 -
  33. scaffold_13248:4294653-4294673 -
  34. scaffold_13248:4788172-4788192 -
  35. scaffold_13250:3101509-3101529 -
  36. scaffold_13250:3476486-3476506 -
  37. scaffold_13258:263876-263896 -
  38. scaffold_13333:195207-195227 -
  39. scaffold_13339:1242076-1242096 -
  40. scaffold_13718:579-599 -
  41. scaffold_176:1748-1768 +
  42. scaffold_287:1048-1068 +
  43. scaffold_2452:8979-8999 +
  44. scaffold_12905:75400-75420 +
  45. scaffold_12911:861422-861442 +
  46. scaffold_12926:244740-244760 +
  47. scaffold_12928:280593-280613 +
  48. scaffold_12948:302278-302298 +
  49. scaffold_13071:44373-44393 +
  50. scaffold_13077:93743-93763 +
  51. scaffold_13089:196022-196042 +
  52. scaffold_13099:364002-364022 +
  53. scaffold_13099:1953220-1953240 +
  54. scaffold_13230:1726760-1726780 +
  55. scaffold_13230:2378325-2378345 +
  56. scaffold_13258:1471590-1471610 +
  57. scaffold_13335:3156560-3156580 +
  58. scaffold_13337:22991929-22991949 +
  59. scaffold_13339:2163455-2163475 +
  60. scaffold_13417:5774016-5774036 +
  61. scaffold_138:71-91 +
  62. scaffold_9027:13-33 +
  63. scaffold_9246:5852-5872 +
  64. scaffold_12671:27886-27906 +
  65. scaffold_12911:235325-235345 +
  66. scaffold_12943:2055535-2055555 +
  67. scaffold_12943:2060687-2060707 +
  68. scaffold_12947:220810-220830 +
  69. scaffold_13077:314197-314217 +
  70. scaffold_13082:812514-812534 +
  71. scaffold_13099:253743-253763 +
  72. scaffold_13099:651164-651184 +
  73. scaffold_13099:1132474-1132494 +
  74. scaffold_13099:2649036-2649056 +
  75. scaffold_13230:425849-425869 +
  76. scaffold_13260:2020667-2020687 +
  77. scaffold_13337:22629092-22629112 +
  78. scaffold_13339:1210368-1210388 +
  79. scaffold_13417:2929515-2929535 +
  80. scaffold_13417:2934006-2934026 +
star
  1. scaffold_9878:919-937 -
  2. scaffold_12097:2203-2221 -
  3. scaffold_13137:506038-506056 +
  4. scaffold_13137:1269565-1269583 +
  5. scaffold_13165:104876-104894 +
  6. dan_2300  scaffold_13335:3212336-3212354 +
  7. scaffold_13767:157131-157149 +
  8. scaffold_13770:158073-158091 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTGGGCAAAATAATTCGATATGGCAAATTTCATAAGGATCGGCCGACTATATACGATCCGCTATATATCTAATAATATAAGATGCGTGGCGCCACCTAGCGGACTGCGACTCAACTGCAAGGATATATAAACTTCGGCTCCGCCCGAAGTTAGCTTTCCTTTCTTGTTTTTATTAAATATTTTTAATACCACTTTTGTAGGCAAAGTCATCAATATCAGCCGATGACAGTAATCAACCAATGAGTACATC
*************************************************************************************((((((((......)))..))))).....................************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 M058
embryo
 V055
head
 V039
embryo
 V106
head
.....................................................................................CGTGGCGCCACCTAGCGGACT................................................................................................................................................. 21 0 20 1.50 30 30 0 0 0 0 0
.......................................................................................................................................................................................................................................AATCAACCAATGAGTACATC 20 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................ATATCAGCCGATGACAGT.................... 18 0 1 1.00 1 0 0 0 1 0 0
.................................................................................................................................................................................................................................GACAGTAATCAACCAATGAGT..... 21 0 1 1.00 1 0 1 0 0 0 0
.......................................................................AATAATATAAGATGCGTGGCG............................................................................................................................................................... 21 0 20 0.35 7 0 7 0 0 0 0
........................................CGGCCGACTATATACGATCCG.............................................................................................................................................................................................. 21 0 20 0.20 4 4 0 0 0 0 0
...............................................................................................................TCAACTGCAAGGATATATA......................................................................................................................... 19 0 8 0.13 1 1 0 0 0 0 0
..............................................................................................ACCTAGCGGACTGCGACTCAACTGC.................................................................................................................................... 25 0 20 0.10 2 0 0 0 0 2 0
........................................CGGCCGACTATATACGATC................................................................................................................................................................................................ 19 0 20 0.10 2 2 0 0 0 0 0
...............................................................................................................................................CCCGAAGTTAGCTTTCCTTTCTTG.................................................................................... 24 0 20 0.10 2 0 0 0 0 2 0
...............................................................................AAGATGCGTGGCGCCACCTAGCGGA................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0
...............................................................................................................................ATAAACTTCGGCTCCGCCC......................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0
..............................................................................................ACCTAGCGGACTGCGACTCAACTGCAA.................................................................................................................................. 27 0 20 0.05 1 0 0 0 0 1 0
......................GGGAAATTTCATAAGGATCGGC............................................................................................................................................................................................................... 22 1 20 0.05 1 0 0 0 1 0 0
............................................................................................................................TATATAAACTTCGGCTCC............................................................................................................. 18 0 20 0.05 1 0 0 1 0 0 0
......................GGCAAATTTCATAAGGATCGG................................................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 1
...........................................................................................................................................TCCGCCCGAAGTTAGCTTTCCTTT........................................................................................ 24 0 20 0.05 1 0 0 0 0 1 0
...............................................................ATATATCTAATAATATAAGATGCGTGGC................................................................................................................................................................ 28 0 20 0.05 1 0 1 0 0 0 0
......................................ATCGGCCGACTATATACGATCCGCT............................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
.......................GCAAATTTCATAAGGATCGGC............................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

AAACCCGTTTTATTAAGCTATACCGTTTAAAGTATTCCTAGCCGGCTGATATATGCTAGGCGATATATAGATTATTATATTCTACGCACCGCGGTGGATCGCCTGACGCTGAGTTGACGTTCCTATATATTTGAAGCCGAGGCGGGCTTCAATCGAAAGGAAAGAACAAAAATAATTTATAAAAATTATGGTGAAAACATCCGTTTCAGTAGTTATAGTCGGCTACTGTCATTAGTTGGTTACTCATGTAG
*************************************************************************************************************************((((((((......)))..))))).....................************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V106
head
........................................................................................................................................CCGAGGCGGGCTTCAATCGAA.............................................................................................. 21 0 20 1.95 39 39 0 0 0
......................................................................................................CTGACGCTGAGTTGACGTTCCTATA............................................................................................................................ 25 0 6 0.17 1 1 0 0 0
.....................................................................................................CCTGACGCTGAGTTGACGTTCCTAT............................................................................................................................. 25 0 6 0.17 1 0 1 0 0
......................................................................................................CTGACGCTGAGTTGACGTTCCTAT............................................................................................................................. 24 0 6 0.17 1 1 0 0 0
................................................................................................GATCGCCTGACGCTGAGTTGACGTTCCT............................................................................................................................... 28 0 7 0.14 1 1 0 0 0
.............................................................................................GTGGATCGCCTGACGCTGAGT......................................................................................................................................... 21 0 20 0.10 2 2 0 0 0
...........................................................................................CGGTGGATCGCCTGACGCTGA........................................................................................................................................... 21 0 20 0.10 2 0 0 2 0
.................................................................................................................................................................AAGAACAAAACTAATTAATAA..................................................................... 21 2 15 0.07 1 0 0 1 0
..........................................CGGCTGATATATGCTAGGCGATATA........................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0
........................................................................................CCGCGGTGGATCGCCTGACGCTCAG.......................................................................................................................................... 25 1 20 0.05 1 1 0 0 0
.................................................................................................ATCGCCTGACGCTGAGTTGACGTTC................................................................................................................................. 25 0 20 0.05 1 0 1 0 0
.....................................................................................GCACCGCGGTGGATCGCCTG.................................................................................................................................................. 20 0 20 0.05 1 0 0 0 1
............................AAAGTATTCCTAGCCGGCTGATATATG.................................................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13335:3212225-3212475 + dan_2300 TTTGGGCAAAATAATTC-----GAT-ATGGCAAATTTCATAAGGATCGGCCGACTATATACGAT--CCGCTATATATCTA------A----------------------------------------------------TAATATA--AGA-TGCGTGGCGCCACCTAGCGGACTGCG------------------------------------------------------------------------------------------ACTCAACTGCAAGGATATATAAACTTCGGCTCCGCCCGAAGTTAGCTTTCC-TTTCTTGTT---TTTATTAA------A------TATTTTT--A----ATACCACTTT--TGTAGGCA----------------------------AAGTCATCAAT----------------ATCAG-CCGATG---A----CAGTA--ATCAACCA-------ATGAGTACATC
droBip1 scf7180000393487:6344-6585 + CTTTGGCAAAACATTAC-----GAC-GTGCCAAATTTCATAAGGATCAGCCGACTATATCTTATAGCTGCCATATAACTGA-----A----------------------------------------------------CGATT--GGAAT-T-----GA----CCCAACT-------------------------------------------------------------------------------------TT--------------AACTGCAAGGGTATATTAACTTCGGCTCCGCCCGAAGTTTGCTTTCT-TTTCTTGTT---TTGTTTTAGTTAAAC------TATT----T-TT----------TTCGTGTTGTCT----------------------------AAGGTATGTAT----------------GCCAA-CGGGTGGGCCCTGTGGGCC--GTCAGCCA-------ACGGGTACAAC
droKik1 scf7180000302696:223292-223505 + TGTAAACATAATAAG----------------------------TATAGGTAAAATGTAATGAAACTCTGTTTTGTGAGTGTTTTCA---------------GCATTTAAATCT------------------------------------------------------------------------------------------------------------------------------------------ATAATATAAACATCGAAACCAATCTGCAAGGGTATACAAACTTCGGCGT--GCCGAAGTTAGCTT-CC-TTTCTTGTT---TTATTTTA---------------------T-TT----------TCCATGCTCTCTGGCCAAGGATAGCTT-------------------------------------------AG-CTAAT---------CAGAATTTATTC-GA-------GTGAATATGAT
droFic1 scf7180000453416:21277-21569 - TAACGACT-------CTTGAATAA-CGAATTGAATTGAATCAAAATCGGACGACTATATCATATAGCTGCCTTATAAACA----------------------------------A-TAG---TCGAAAATATGAAAAATTAA--------------------------------TAGAAAAAACGTTATAGCTTCGATGCTGTCTAGCCTTTTTGTATTTT---------------------------------GTTC--------------GACTGCAAGGGTATATAAGCTTCGGCTT--GCCGAATCTAGCTT-CC-TTTCTTGTT---TTTGTTCA------A------TA----------------------------------------ATAGTTTTGTAATGACTCTCGAATTT---TATTTAAATTTCATCAAAATCGGACGACTATATC----ATAT------AGCTGTCGAACAA-----TCGTC
droEle1 scf7180000490255:3963-4191 + TAATGATTAAATATTTCAGAGTTA-CGGCTTAAATTTTATCAAAATCAATACA-TATA---TATATTTTTTATGTAACTTT-----T----------------------------------------------------CTA---------------------------------------------------------TTTTGTAA-----------TTTGACAGTTTCGTTTTTGCA-----------------AT--------------AGCTGCAAGGGTATATAAACTTCGGCTT--GCCGAAGTTTCCTT-CC-TTTTTTGTT---TAAA----ATATCT-----------------T------------------------------------TTTAAAATATCTTTTAAAATACATTTTATAATTTTCATCA------------------------CAT--ATCAGCAG-------AT--------G
droRho1 scf7180000768519:4081-4299 - TTTTGGCCAATCAATCC-----GAC-CTACCAAATTTCACAAGGATCGGCCGACTATATCCTATAGCTGCCATATAACTGA-----T----------------------------------------------------TGATC--GGAAA-T-----GC----CATAACTTA-CA-G------------------------------------------------------------------------------------------AATATTCTGCAAGGGTATATCAACTTCGTCTCCGCCCGAAGTTAGCTTTCC-TTTTTTGTT---TAAT----ATTTCAGCATAAAT----TTAA-TT----------TT--TGTTTACA----------------------------AATTCA-------A-------------ATCA---------------------GTGGTAGCAG-------TA--------A
droBia1 scf7180000302411:104614-104878 - TTAATT------AGTTCTGAATTT-TGAATTAAATTTTATCAAAATCGGACGACTATATCATGTAGCTGTCATAGGAACA---------------------------------------------------------AAT---GGG-AAATTA-----GT----GGGAAAATAATATGAAAAATTATT------------TACTAAA------------------GTTGATTATTTCTT-----------------AT--------------AACTGCAAGGGTATACAAACTTCGGCTT--GCCGAAGTAAACTT-TT-ATTCTTGTT---TTTATATTGTTTAAA------AATTTAT--A----AAATGATTT---TG---TTT--------------------------------------C----------------AAAAA-TCAATG---T----CCATC--TACAACCAATAA---ATTAATTCATT
droTak1 scf7180000415094:7145-7382 - TTAATAT-------TTC-------------GGAATATAATAAAAATCGGACGACTATATTATATAGCTGCCATAGGGA--------A----------------------------------------------------GGATAGA--AAA-ATTTTTGCGATTCGTAAGTTAATAGG------------------------------------------------------------------------------------------AATGATCTGTAAGGGTATATAAGCTT-GGCTG--GCCGAAGCTAGCTT-CC-TTTCTTGTT---TTAA----GTGTAAAAACGTTT----TTAA-CTTCTTTTCAAT-T--TCTAACTC----------------------------GAGTTG---TG----------------ATAAA-CTGATT---T----CGGTC--ATCAAAGA-------CTCATTTTATT
droEug1 scf7180000408984:780825-780881 - ATCTTC-----------------------------------------------------------------------------------------------------------------------ATAGGTTAAGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC-------------------------------------------------------------------------------------------------------------------C----------------TGCTT-CCGATA---A----TTGCC--AACAGCCG-------ACA---ACTTT
dm3 chr4:390107-390179 + TCTCTTTTA---------------------------------------------------------------------------------------------------AATATAT-TTT---TCTATAGGGTGAAAAATCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------ATTAT-CCGATG---A----TTGTC--ATCAGCCG-------ACG---ACTTC
droSim2 3l:17873298-17873368 - TCTTTTA-----------------------------------------------------------------------------------------------------AATATAT-TTT---TCTATAGGGTGAAAAATCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------AGTAT-CCGATG---A----TTGTC--ATCAGCCG-------ACA---ACTTC
droSec2 scaffold_30:122647-122717 + TCTTTTA-----------------------------------------------------------------------------------------------------AATATAT-TTT---TCTATAGGGTGAAAAATCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------AGTAT-CCGATG---A----TTGTC--ATCAGCCG-------ACA---ACTTC
droYak3 4:430952-431036 + TTTTGTTT-------------------------------------------------------------------------TTTAC---------------TCACTTAAATATACATTT---TATATAGGGTAAAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------CACC----------------ACCTA-CCGATG---A----TTGTC--ATCAGCCG-------ACA---ACTTC
droEre2 scaffold_4512:903265-903336 - TCTTTTA-----------------------------------------------------------------------------------------------------AATATATGTTT---TCTATAGGGTAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------TCAC-----------------------------------------------------------------------------------------------------------------------------------C----------------AGCTT-TCGATG---A----TTGTC--TTCAGCCG-------ACA---ACTTC
dp5 Unknown_group_1:59645-59719 + TTCTCATT----------------------------------------------------------------------------------------------------ATTTTTT-TTTTTTTTTATAGGCGAA---ACCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC----------------ATCGG-AGAGTA---C----CTGCA--GCCGACCG-------ACA---ACGTC
droPer2 scaffold_42:181003-181077 + TTCTCATT----------------------------------------------------------------------------------------------------ATTTTTT-TTT---TTTTTTAAAGGCGAAACCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC----------------ATCGG-AGAGTA---C----CTGCA--GCCGACCG-------ACA---ACGTC
droWil2 scf2_1100000004961:2236097-2236360 + GTTTAGCATAACTAT--TAAT-GACTGTGCCAAATTTGATTAATATCGGGCGACTATATCATATAGCTCCCATAGGAA---------------------------------------------------------CAATCGGTG--GTAAACA-----GT----GA---CTTT-GATCA--------ATAACTTCGTTATTTCCTAA------------------GCCGTTCTTTCGCAAATATTAGACCTTTTACTCA---------AAAAACTTGCAAGGGTATACAAACTTTGACGC-GGTCAAAGTTAGCCC-CGGCCCTCTGTTTTTTTTTTTTT------A------TTTTTGT--T----ATTTTA-------------------------------------------------------G-------------GTCT---------------------GTCATTGGAG--------TCAAC----A
droVir3 scaffold_12776:10734-10916 + GTTTATCAAGATATCTT-----GA---------------CCAAACTCGGCA-----TTTACTAT--TTTCCACTTACTTA------TTAGATAGAGGCAAAG------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCTGCAAGGGTATTAGAACTTTGGCGT--TCCGAAGATAGCCCTTC-TTTCTCGTT---TTACTTAA------A------TTTATTT--T----ATATTA------------CA----------------------------ATTT-----------------------------------------------------------------------TTATA
droGri2 scaffold_14592:57103-57126 - TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TTGCA--ATCAGCCG-------ACT---GCATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTTGGGCAAAATAATTC-----GAT-ATGGCAAATTTCATAAGGATCGGCCGACTATATACGAT--CCGCTATATATCTA------A----------------------------------------------------TAATATA--AGA-TGCGTGGCGCCACCTAGCGGACTGCG------------------------------------------------------------------------------------------ACTCAACTGCAAGGATATATAAACTTCGGCTCCGCCCGAAGTTAGCTTTCC-TTTCTTGTT---TTTATTAA------A------TATTTTT--A----ATACCACTTT--TGTAGGCA----------------------------AAGTCATCAAT----------------ATCAG-CCGATG---A----CAGTA--ATCAACCA-------ATGAGTACATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................CGTGGCGCCACCTAGCGGACT................................................................................................................................................................................................................................................................................................................................21201.50303000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATCAACCA-------ATGAGTACATC2011.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------------ATCAG-CCGATG---A----CAGT.............................1811.001000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---A----CAGTA--ATCAACCA-------ATGAGT.....2111.001000010
...............................................................................A------A----------------------------------------------------TAATATA--AGA-TGCGTGGCG..............................................................................................................................................................................................................................................................................................................................................21200.357000070
..............................................CGGCCGACTATATACGAT--CCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.204400000
..............................................................................................................................................................................................................................................................................TCAACTGCAAGGATATATA..............................................................................................................................................................................................................1980.131100000
...................................................................................................................................................................ACCTAGCGGACTGCG------------------------------------------------------------------------------------------ACTCAACTGC.........................................................................................................................................................................................................................25200.102002000
..............................................CGGCCGACTATATACGAT--C............................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102200000
..............................................................................................................................................................................................................................................................................................................CCCGAAGTTAGCTTTCC-TTTCTTG........................................................................................................................................................................24200.102002000
.................................................................................................................................................A--AGA-TGCGTGGCGCCACCTAGCGGA..................................................................................................................................................................................................................................................................................................................................25200.051010000
..............................................................................................................................................................................................................................................................................................ATAAACTTCGGCTCCGCCC..............................................................................................................................................................................................19200.051010000
...................................................................................................................................................................ACCTAGCGGACTGCG------------------------------------------------------------------------------------------ACTCAACTGCAA.......................................................................................................................................................................................................................27200.051001000
...........................................................................................................................................................................................................................................................................................TATATAAACTTCGGCTCC..................................................................................................................................................................................................18200.051010000
............................GGCAAATTTCATAAGGATCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
..........................................................................................................................................................................................................................................................................................................TCCGCCCGAAGTTAGCTTTCC-TTT............................................................................................................................................................................24200.051001000
.......................................................................ATATATCTA------A----------------------------------------------------TAATATA--AGA-TGCGTGGC...............................................................................................................................................................................................................................................................................................................................................28200.051000010
............................................ATCGGCCGACTATATACGAT--CCGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.............................GCAAATTTCATAAGGATCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
droBip1
CTTTGGCAAAACATTAC-----GAC-GTGCCAAATTTCATAAGGATCAGCCGACTATATCTTATAGCTGCCATATAACTGA-----A----------------------------------------------------CGATT--GGAAT-T-----GA----CCCAACT-------------------------------------------------------------------------------------TT--------------AACTGCAAGGGTATATTAACTTCGGCTCCGCCCGAAGTTTGCTTTCT-TTTCTTGTT---TTGTTTTAGTTAAAC------TATT----T-TT----------TTCGTGTTGTCT----------------------------AAGGTATGTAT----------------GCCAA-CGGGTGGGCCCTGTGGGCC--GTCAGCCA-------ACGGGTACAACSizeHit CountTotal NormTotal
No Reads
droKik1
TGTAAACATAATAAG----------------------------TATAGGTAAAATGTAATGAAACTCTGTTTTGTGAGTGTTTTCA---------------GCATTTAAATCT------------------------------------------------------------------------------------------------------------------------------------------ATAATATAAACATCGAAACCAATCTGCAAGGGTATACAAACTTCGGCGT--GCCGAAGTTAGCTT-CC-TTTCTTGTT---TTATTTTA---------------------T-TT----------TCCATGCTCTCTGGCCAAGGATAGCTT-------------------------------------------AG-CTAAT---------CAGAATTTATTC-GA-------GTGAATATGATSizeHit CountTotal NormTotal
No Reads
droFic1
TAACGACT-------CTTGAATAA-CGAATTGAATTGAATCAAAATCGGACGACTATATCATATAGCTGCCTTATAAACA----------------------------------A-TAG---TCGAAAATATGAAAAATTAA--------------------------------TAGAAAAAACGTTATAGCTTCGATGCTGTCTAGCCTTTTTGTATTTT---------------------------------GTTC--------------GACTGCAAGGGTATATAAGCTTCGGCTT--GCCGAATCTAGCTT-CC-TTTCTTGTT---TTTGTTCA------A------TA----------------------------------------ATAGTTTTGTAATGACTCTCGAATTT---TATTTAAATTTCATCAAAATCGGACGACTATATC----ATAT------AGCTGTCGAACAA-----TCGTCSizeHit CountTotal NormTotal
No Reads
droEle1
TAATGATTAAATATTTCAGAGTTA-CGGCTTAAATTTTATCAAAATCAATACA-TATA---TATATTTTTTATGTAACTTT-----T----------------------------------------------------CTA---------------------------------------------------------TTTTGTAA-----------TTTGACAGTTTCGTTTTTGCA-----------------AT--------------AGCTGCAAGGGTATATAAACTTCGGCTT--GCCGAAGTTTCCTT-CC-TTTTTTGTT---TAAA----ATATCT-----------------T------------------------------------TTTAAAATATCTTTTAAAATACATTTTATAATTTTCATCA------------------------CAT--ATCAGCAG-------AT--------GSizeHit CountTotal NormTotal
No Reads
droRho1
TTTTGGCCAATCAATCC-----GAC-CTACCAAATTTCACAAGGATCGGCCGACTATATCCTATAGCTGCCATATAACTGA-----T----------------------------------------------------TGATC--GGAAA-T-----GC----CATAACTTA-CA-G------------------------------------------------------------------------------------------AATATTCTGCAAGGGTATATCAACTTCGTCTCCGCCCGAAGTTAGCTTTCC-TTTTTTGTT---TAAT----ATTTCAGCATAAAT----TTAA-TT----------TT--TGTTTACA----------------------------AATTCA-------A-------------ATCA---------------------GTGGTAGCAG-------TA--------ASizeHit CountTotal NormTotal
No Reads
droBia1
TTAATT------AGTTCTGAATTT-TGAATTAAATTTTATCAAAATCGGACGACTATATCATGTAGCTGTCATAGGAACA---------------------------------------------------------AAT---GGG-AAATTA-----GT----GGGAAAATAATATGAAAAATTATT------------TACTAAA------------------GTTGATTATTTCTT-----------------AT--------------AACTGCAAGGGTATACAAACTTCGGCTT--GCCGAAGTAAACTT-TT-ATTCTTGTT---TTTATATTGTTTAAA------AATTTAT--A----AAATGATTT---TG---TTT--------------------------------------C----------------AAAAA-TCAATG---T----CCATC--TACAACCAATAA---ATTAATTCATTSizeHit CountTotal NormTotal
No Reads
droTak1
TTAATAT-------TTC-------------GGAATATAATAAAAATCGGACGACTATATTATATAGCTGCCATAGGGA--------A----------------------------------------------------GGATAGA--AAA-ATTTTTGCGATTCGTAAGTTAATAGG------------------------------------------------------------------------------------------AATGATCTGTAAGGGTATATAAGCTT-GGCTG--GCCGAAGCTAGCTT-CC-TTTCTTGTT---TTAA----GTGTAAAAACGTTT----TTAA-CTTCTTTTCAAT-T--TCTAACTC----------------------------GAGTTG---TG----------------ATAAA-CTGATT---T----CGGTC--ATCAAAGA-------CTCATTTTATTSizeHit CountTotal NormTotal
No Reads
droEug1
ATCTTC-----------------------------------------------------------------------------------------------------------------------ATAGGTTAAGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC-------------------------------------------------------------------------------------------------------------------C----------------TGCTT-CCGATA---A----TTGCC--AACAGCCG-------ACA---ACTTTSizeHit CountTotal NormTotal
No Reads
dm3
TCTCTTTTA---------------------------------------------------------------------------------------------------AATATAT-TTT---TCTATAGGGTGAAAAATCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------ATTAT-CCGATG---A----TTGTC--ATCAGCCG-------ACG---ACTTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................GGGTGAAAAATCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------ATTAT-CC.............................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CCGATG---A----TTGTC--ATCAGCCG-------ACG---ACT..2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATG---A----TTGTC--ATCAGCCG-------ACG---ACTT.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---A----TTGTC--ATCAGCCG-------ACG---.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAT-CCGATG---A----TTGTC--ATCAGCCG-------ACG---AC...2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------ATTAT-CCGATG---A----TTGTC--AT........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TCTATAGGGTGAAAAATCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------ATTA.................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATG---A----TTGTC--ATCAGCCG-------AC.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCTTTTA-----------------------------------------------------------------------------------------------------AATATAT-TTT---TCTATAGGGTGAAAAATCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------AGTAT-CCGATG---A----TTGTC--ATCAGCCG-------ACA---ACTTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................CAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------AGTAT-CCGATG---A----TTGT.............................2011.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------AGTAT-CCGATG---A----TTGTC--ATCAGCCG-------A..........2711.00100010000000000000
...........................................................................................................................................CAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------AGTAT-CCGATG---A----TTGTC--..........................2111.00101000000000000000
droSec2
TCTTTTA-----------------------------------------------------------------------------------------------------AATATAT-TTT---TCTATAGGGTGAAAAATCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------AGTAT-CCGATG---A----TTGTC--ATCAGCCG-------ACA---ACTTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTTTGTTT-------------------------------------------------------------------------TTTAC---------------TCACTTAAATATACATTT---TATATAGGGTAAAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------CACC----------------ACCTA-CCGATG---A----TTGTC--ATCAGCCG-------ACA---ACTTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................AAAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------CACC----------------ACCTA-CCGATG---A----TTGT.............................2718.00800000000008
droEre2
TCTTTTA-----------------------------------------------------------------------------------------------------AATATATGTTT---TCTATAGGGTAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------TCAC-----------------------------------------------------------------------------------------------------------------------------------C----------------AGCTT-TCGATG---A----TTGTC--TTCAGCCG-------ACA---ACTTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT-TCGATG---A----TTGTC--TTCAGCCG-------ACA---.....2611.0011000000
dp5
TTCTCATT----------------------------------------------------------------------------------------------------ATTTTTT-TTTTTTTTTATAGGCGAA---ACCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC----------------ATCGG-AGAGTA---C----CTGCA--GCCGACCG-------ACA---ACGTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTA---C----CTGCA--GCCGACC...................1811.0010100000000
................................................................................................................TTT-TTTTTTTTTATA...............................................................................................................................................................................................................................................................................................................................................................................15200.0510000000100
droPer2
TTCTCATT----------------------------------------------------------------------------------------------------ATTTTTT-TTT---TTTTTTAAAGGCGAAACCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC----------------ATCGG-AGAGTA---C----CTGCA--GCCGACCG-------ACA---ACGTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GTTTAGCATAACTAT--TAAT-GACTGTGCCAAATTTGATTAATATCGGGCGACTATATCATATAGCTCCCATAGGAA---------------------------------------------------------CAATCGGTG--GTAAACA-----GT----GA---CTTT-GATCA--------ATAACTTCGTTATTTCCTAA------------------GCCGTTCTTTCGCAAATATTAGACCTTTTACTCA---------AAAAACTTGCAAGGGTATACAAACTTTGACGC-GGTCAAAGTTAGCCC-CGGCCCTCTGTTTTTTTTTTTTT------A------TTTTTGT--T----ATTTTA-------------------------------------------------------G-------------GTCT---------------------GTCATTGGAG--------TCAAC----ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................TATCATATAGCTCCCATAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................21200.30606000
...................................................................................................................................................TAAACA-----GT----GA---CTTT-GATCA--------ATAACT..............................................................................................................................................................................................................................................................................................................25200.20401030
...............................................................................................................................................................................................................................................................................AACTTGCAAGGGTATACAAACTTTG.......................................................................................................................................................................................................25200.10200020
........TAACTAT--TAAT-GACTGTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10220000
..............................................................................................................................................TG--GTAAACA-----GT----GA---CTTT-GATC.............................................................................................................................................................................................................................................................................................................................21200.05101000
.....................................................................................................................................................................................................TATTTCCTAA------------------GCCGTTCTTTCGC.................................................................................................................................................................................................................................................................23200.05100001
....................................................................................................................................................................................................TTATTTCCTAA------------------GCCGTTCTTTC...................................................................................................................................................................................................................................................................22200.05100010
.....................................................................................................................................................................................................................................TTCTTTCGCAAATATTAGACCTTT..................................................................................................................................................................................................................................................24200.05101000
.............................................................................................................................................................................................................................................................................................TACAAACTTTGACGC-GGTCAA............................................................................................................................................................................................21200.05100100
............................................................................................................................................................................................................TAA------------------GCCGTTCTTTCGCAAATATTAGACC.....................................................................................................................................................................................................................................................28200.05101000
........TAACTAT--TAAT-GACTGTGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110000
...................................................................TCCCATAGGAA---------------------------------------------------------CAATCGGTG--G............................................................................................................................................................................................................................................................................................................................................................21200.05101000
............................................................................................................................................................................................................................................................................................ATACAAACTTTGACGC-GGTCAAAGT.........................................................................................................................................................................................25200.05100010
......................................................................................................................................................................................................................................TCTTTCGCAAATATTAGACCTTTTA................................................................................................................................................................................................................................................25200.05101000
.........................................................................................................................................ATCGGTG--GTAAACA-----GT----GA---CT....................................................................................................................................................................................................................................................................................................................................20200.05101000
...............................................................................................................................................................................................................................................................................AACTTGCAAGGGTATACAAACTT.........................................................................................................................................................................................................23200.05100010
...................................................................................................................................................................................................GTTATTTCCTAA------------------GCCGTTCTT.....................................................................................................................................................................................................................................................................21200.05101000
............................................................................................................................................................................................................................................................................................ATACAAACTTTGACGC-GGTCAAA...........................................................................................................................................................................................23200.05100100
....................................................................................................................................................................................................................................................................................................TTTGACGC-GGTCAAAGTTAGCCC-CGGC..............................................................................................................................................................................27200.05101000
....................................................................................................................................................................................................................................................TAGACCTTTTACTCA---------AAAAACTTGC.........................................................................................................................................................................................................................25200.05101000
droVir3
GTTTATCAAGATATCTT-----GA---------------CCAAACTCGGCA-----TTTACTAT--TTTCCACTTACTTA------TTAGATAGAGGCAAAG------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCTGCAAGGGTATTAGAACTTTGGCGT--TCCGAAGATAGCCCTTC-TTTCTCGTT---TTACTTAA------A------TTTATTT--T----ATATTA------------CA----------------------------ATTT-----------------------------------------------------------------------TTATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................TGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCTGC.........................................................................................................................................................................................................................27201.60320000000000000000000000000000023005040000000000000000000000000000
.................................................................................................................................T-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGT.............................................................................................................................................................................................................................25201.30260000000020000000000000001050000000070200000000000000000000000000
.............................................................................................................................................................................................................................................................TATGAAAAGG-----TTGGGTCTGCAAGGGT...................................................................................................................................................................................................................26200.95190000000000000000000000010018000000000000000000000000000000000000
.................................................................................................................................T-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTC............................................................................................................................................................................................................................26200.9519000000007000000000000000000080020000000000000000000000000000020
.............................................................................................................................................G--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCTGC.........................................................................................................................................................................................................................24200.65130000013000000000000000000000000000000000000000000000000000000000
.................................................................................................................................T-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGG..............................................................................................................................................................................................................................24200.408000000000000000000000000004040000000000000000000000000000000000
..........................................................................................................................................TGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCT...........................................................................................................................................................................................................................25200.306000000000000000000000000000060000000000000000000000000000000000
.............................................................................................................................................G--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCTGCAA.......................................................................................................................................................................................................................26200.306000001000000000000000000400000000000100000000000000000000000000
............................................................................................................................................AG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGG..............................................................................................................................................................................................................................20200.255000000050000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCTGC.........................................................................................................................................................................................................................23200.255000000202000000000000000000000000000000000000000000000000000010
..........................................................................................................................................TGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCTG..........................................................................................................................................................................................................................26200.255000000000000000000000000005000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TATGAAAAGG-----TTGGGTCTGCAAGGG....................................................................................................................................................................................................................25200.204000000000000000000000000000000000040000000000000000000000000000
.............................................................................................................................................................................................................................................................TATGAAAAGG-----TTGGGTCTGCAA.......................................................................................................................................................................................................................22200.204000000000000100000000000000000002001000000000000000000000000000
.....TCAAGATATCTT-----GA---------------CCAAACTCGGCA-----T......................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.204000000000000000000002000000000002000000000000000000000000000000
.............................................................................................................................................G--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCTGCA........................................................................................................................................................................................................................25200.153000000000000000000000000000030000000000000000000000000000000000
.............................................................................................................................................G--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCTG..........................................................................................................................................................................................................................23200.153000002000010000000000000000000000000000000000000000000000000000
.....................................................................................................G------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TT.................................................................................................................................................................................................................................25200.102000000200000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTATGAAAAGG-----TTGGGTCTGC.........................................................................................................................................................................................................................21200.102000000100000010000000000000000000000000000000000000000000000000
...........TATCTT-----GA---------------CCAAACTCGGCA-----TTTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000000200000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CGAAGATAGCCCTTC-TTT............................................................................................................................................................................18200.102000000000020000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................ATTATGAAAAGG-----TTGGGTCTG..........................................................................................................................................................................................................................21200.102000000002000000000000000000000000000000000000000000000000000000
.............................................................................................................................................G--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCT...........................................................................................................................................................................................................................22200.102000000000200000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TATGAAAAGG-----TTGGGTCTGC.........................................................................................................................................................................................................................20200.102000000000000000000000000000001001000000000000000000000000000000
...............................................................................................................................ACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGG..............................................................................................................................................................................................................................26200.102000000000000000000000000000000010000100000000000000000000000000
..............................................................................................................................CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGG..............................................................................................................................................................................................................................27200.102000000000000000000000000000011000000000000000000000000000000000
...................................................................................................................................................................................................................................................................AAGG-----TTGGGTCTGCAAGGGTATTAGA.............................................................................................................................................................................................................26200.102000000000000000000000000001010000000000000000000000000000000000
.......................................................................................TAGATAGAGGCAAAG------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------AT..................................................................................................................................................................................................................................................27200.051000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................ATGAAAAGG-----TTGGGTCTGCAA.......................................................................................................................................................................................................................21200.051000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................G--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTC............................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
......................................................................................TTAGATAGAGGCAAAG------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------A...................................................................................................................................................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
.....TCAAGATATCTT-----GA---------------CCAAACTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TGAAAAGG-----TTGGGTCTGCAAGGG....................................................................................................................................................................................................................23200.051000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................T-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGG...............................................................................................................................................................................................................................23200.051000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................TGAAAAGG-----TTGGGTCTGCAAGG.....................................................................................................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................T-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCT...........................................................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
....................................................................................................AG------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----...................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................AG------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TT.................................................................................................................................................................................................................................26200.051000000000000000000000000000000000100000000000000000000000000000
.............................................................................................GAGGCAAAG------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATG..............................................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................AG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTG................................................................................................................................................................................................................................18200.051000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TGAAAAGG-----TTGGGTCTGCAAGGGT...................................................................................................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................TTAGATAGAGGCAAAG------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------....................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TT.................................................................................................................................................................................................................................24200.051000000000000000000000000000000010000000000000000000000000000000
.............TCTT-----GA---------------CCAAACTCGGCA-----TTTACTAT--.............................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................CT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGT.............................................................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
.............TCTT-----GA---------------CCAAACTCGGCA-----TTTACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000100000000000000000000000000000000
..TTATCAAGATATCTT-----GA---------------CCAAACTCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................TGAAAAGG-----TTGGGTCTGCAAGGGTAT.................................................................................................................................................................................................................26200.051000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................ATTATGAAAAGG-----TTGGGTCTGC.........................................................................................................................................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................G--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGG..............................................................................................................................................................................................................................19200.051000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----T..................................................................................................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TATGAAAAGG-----TTGGGTCTGCA........................................................................................................................................................................................................................21200.051000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................TATGAAAAGG-----TTGGGTCTGCAAGG.....................................................................................................................................................................................................................24200.051000000000010000000000000000000000000000000000000000000000000000
....................................................................................................AG------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----T..................................................................................................................................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................G------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----...................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TGAAAAGG-----TTGGGTCTGCAAG......................................................................................................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTATGAAAAGG-----TTGGGTCTGCAAG......................................................................................................................................................................................................................24200.051000000000010000000000000000000000000000000000000000000000000000
.......................................................................................TAGATAGAGGCAAAG------------------------CACT-------ATGA..................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................GAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGGGTCT...........................................................................................................................................................................................................................24200.051000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................G------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------ATTATGAAAAGG-----TTGG...............................................................................................................................................................................................................................27200.051000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................GAAAAGG-----TTGGGTCTGCAAGGGTAT.................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TATGAAAAGG-----TTGGGTCTGCAAGGGTA..................................................................................................................................................................................................................27200.051000000000000000000000000000000100000000000000000000000000000000
.....TCAAGATATCTT-----GA---------------CCAAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................GATAGAGGCAAAG------------------------CACT-------ATGAG--------------------------------------C----------------------------------------------------------------------....................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000100000000000000000000000000000
droGri2
TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TTGCA--ATCAGCCG-------ACT---GCATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:21 AM