ID:

dan_230

 Coordinate:

scaffold_13417:2461015-2461114 -

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.2 -31.2 -30.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GAATCCCGACTACAAACGTCCATTCCCTGCGCTATGAGGTGCCGTCCATGATCCGAATGATGCACATGGTATGGAAGGCCTATCGACTGCTATGTGTACTTCAGGATGAATAACAGTCAGAAAGGCGCTTTCACACCAAGTGAGATCCGGCCCCTGCAGACGTCGCGTCCCGTGACGGGCAGTTCCTGAACTGTCAAATA

********************************************************..(((.(((.((((.((((((((((.(((((((.(((..((........))..))).))))).)).)))).)))))).)))).)))..))).**************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105

male body		 V106

head

 V055

head

 M044

female body

 V039

embryo
...............................................................................................................AACAGTCAGAAAGGCGCTTTCA................................................................... 22 0 1 3098.00 3098 2716 306 71 5 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCAC.................................................................. 23 0 1 887.00 887 746 105 30 5 1
...............................................................................................................AACAGTCAGAAAGGCGCTTTCACA................................................................. 24 0 1 548.00 548 423 97 21 7 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTC.................................................................... 21 0 1 187.00 187 174 8 4 0 1
................................................................................................................ACAGTCAGAAAGGCGCTTTCA................................................................... 21 0 1 133.00 133 106 23 4 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCAT.................................................................. 23 1 1 127.00 127 110 14 3 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCT................................................................... 22 1 1 123.00 123 104 14 5 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCACT................................................................. 24 1 1 80.00 80 63 12 3 2 0
...............................................................................................................AACAGTCAGAAAGGCGCTTT..................................................................... 20 0 1 72.00 72 64 4 3 1 0
...............................................................................................................AACAGTCAGAAAGTCGCTTTCA................................................................... 22 1 1 26.00 26 23 3 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTGA................................................................... 22 1 1 26.00 26 25 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTAA................................................................... 22 1 1 25.00 25 22 2 1 0 0
................................................................................................................ACAGTCAGAAAGGCGCTTTCAC.................................................................. 22 0 1 24.00 24 13 6 3 2 0
................................................................................................................ACAGTCAGAAAGGCGCTTTCACA................................................................. 23 0 1 23.00 23 12 8 1 2 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCACAT................................................................ 25 1 1 20.00 20 18 2 0 0 0
...............................................................................................................AACAGTCAGAAAGGCTCTTTCA................................................................... 22 1 1 19.00 19 16 3 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCATT................................................................. 24 2 1 18.00 18 15 2 1 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTTA................................................................... 22 1 1 17.00 17 15 2 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGATTTCA................................................................... 22 1 1 16.00 16 13 3 0 0 0
...............................................................................................................AACAGTCAGAAAGGAGCTTTCA................................................................... 22 1 1 15.00 15 13 1 1 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTT.................................................................... 21 1 1 14.00 14 14 0 0 0 0
...............................................................................................................AACAGTCAGAAGGGCGCTTTCA................................................................... 22 1 1 13.00 13 13 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCACTTTCA................................................................... 22 1 1 12.00 12 11 1 0 0 0
...............................................................................................................AACAGTCAGAGAGGCGCTTTCA................................................................... 22 1 1 12.00 12 10 2 0 0 0
...............................................................................................................AACAGTCAGAAATGCGCTTTCA................................................................... 22 1 1 12.00 12 12 0 0 0 0
...............................................................................................................AACAGTCAGAAAAGCGCTTTCA................................................................... 22 1 1 11.00 11 11 0 0 0 0
...............................................................................................................AACAGTCAGAATGGCGCTTTCA................................................................... 22 1 1 10.00 10 10 0 0 0 0
...............................................................................................................AACAGTCAGAACGGCGCTTTCA................................................................... 22 1 1 10.00 10 9 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCATTT................................................................ 25 3 1 10.00 10 9 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCAA.................................................................. 23 1 1 9.00 9 5 3 1 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTAAC.................................................................. 23 1 1 8.00 8 7 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCACAC................................................................ 25 0 1 8.00 8 5 2 1 0 0
...............................................................................................................AACAGTAAGAAAGGCGCTTTCA................................................................... 22 1 1 7.00 7 5 2 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCTT.................................................................. 23 2 1 7.00 7 7 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGATTTCACA................................................................. 24 1 1 7.00 7 5 2 0 0 0
...............................................................................................................AACAGTCAGAAAGTCGCTTTCACA................................................................. 24 1 1 7.00 7 6 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTGAC.................................................................. 23 1 1 7.00 7 7 0 0 0 0
...............................................................................................................AGCAGTCAGAAAGGCGCTTTCA................................................................... 22 1 1 6.00 6 5 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCACTT................................................................ 25 2 1 6.00 6 6 0 0 0 0
...............................................................................................................AACAGTCAGAAATGCGCTTTCAC.................................................................. 23 1 1 6.00 6 5 1 0 0 0
...............................................................................................................AACAATCAGAAAGGCGCTTTCA................................................................... 22 1 1 6.00 6 5 1 0 0 0
................................................................................................................ACAGTCAGAAAGGCGCTTT..................................................................... 19 0 1 6.00 6 4 1 1 0 0
...............................................................................................................AACAGTCAGAAAGGCTCTTTCAC.................................................................. 23 1 1 5.00 5 5 0 0 0 0
...............................................................................................................AACAGTCGGAAAGGCGCTTTCA................................................................... 22 1 1 5.00 5 4 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTT...................................................................... 19 0 1 5.00 5 5 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCTCTTTCACA................................................................. 24 1 1 5.00 5 4 1 0 0 0
...............................................................................................................AACAGTCAGAAAGACGCTTTCA................................................................... 22 1 1 5.00 5 5 0 0 0 0
.......................................................................TGGAAGGCCTATCGACTGCTAT........................................................................................................... 22 0 1 4.00 4 1 0 1 2 0
...............................................................................................................AACAGTCAGAAAGGCGATTTCAC.................................................................. 23 1 1 4.00 4 3 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCC................................................................... 22 1 1 4.00 4 4 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTG.................................................................... 21 1 1 4.00 4 4 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCCCTTTCA................................................................... 22 1 1 4.00 4 4 0 0 0 0
...............................................................................................................ACCAGTCAGAAAGGCGCTTTCA................................................................... 22 1 1 4.00 4 3 1 0 0 0
...............................................................................................................AACACTCAGAAAGGCGCTTTCA................................................................... 22 1 1 4.00 4 3 0 1 0 0
...............................................................................................................AACATTCAGAAAGGCGCTTTCA................................................................... 22 1 1 4.00 4 4 0 0 0 0
...............................................................................................................AACAGCCAGAAAGGCGCTTTCA................................................................... 22 1 1 4.00 4 3 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTTT................................................................... 22 2 1 4.00 4 4 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTA.................................................................... 21 1 1 4.00 4 3 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTGACA................................................................. 24 1 1 4.00 4 4 0 0 0 0
................................................................................................................ACAGTCAGAAAGGCGCTTTC.................................................................... 20 0 1 4.00 4 3 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCTCTTTC.................................................................... 21 1 1 4.00 4 4 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTAACA................................................................. 24 1 1 4.00 4 4 0 0 0 0
....................................................................GTATGGAAGGGCCATCGC.................................................................................................................. 18 3 20 3.25 65 0 0 10 55 0
...............................................................................................................AACAGTCAGATAGGCGCTTTCAC.................................................................. 23 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCCGAAAGGCGCTTTCA................................................................... 22 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGAACGGCGCTTTCAC.................................................................. 23 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AACATTCAGAAAGGCGCTTTCAC.................................................................. 23 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCG................................................................... 22 1 1 3.00 3 2 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGAGCTTTCAC.................................................................. 23 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGAAAAGCGCTTTCACA................................................................. 24 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCCTTCA................................................................... 22 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGAAAGACGCATTCA................................................................... 22 2 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGAAAGACGCTTTCACA................................................................. 24 1 1 3.00 3 2 1 0 0 0
...............................................................................................................AACAGTCATAAAGGCGCTTTCA................................................................... 22 1 1 3.00 3 2 1 0 0 0
...............................................................................................................AACAGTCAGAAAGCCGCTTTCAC.................................................................. 23 1 1 3.00 3 2 1 0 0 0
...............................................................................................................AACAGTCAGACAGGCGCTTTCA................................................................... 22 1 1 3.00 3 2 0 1 0 0
...............................................................................................................AACTGTCAGAAAGGCGCTTTCA................................................................... 22 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGAAGGGCGCTTTCAC.................................................................. 23 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGGAAGGCGCTTTCAC.................................................................. 23 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AGCAGTCAGAAAGGCGCTTTCAC.................................................................. 23 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGAAATGCTCTTTCA................................................................... 22 2 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCTTT................................................................. 24 3 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGAAACGCGCTTTCA................................................................... 22 1 1 3.00 3 3 0 0 0 0
...............................................................................................................AACAGTCAGACAGGCGCTTTCAC.................................................................. 23 1 1 3.00 3 1 1 1 0 0
...............................................................................................................AACAGTCAGAAAGGAGCTTTC.................................................................... 21 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGGCAGAAAGGCGCTTTCAC.................................................................. 23 1 1 2.00 2 0 0 2 0 0
...............................................................................................................AACAGTCAAAAAGGCGCTTTAA................................................................... 22 2 1 2.00 2 2 0 0 0 0
...............................................................................................................AACACTCAGAAAGGCGCTTTCAC.................................................................. 23 1 1 2.00 2 2 0 0 0 0
................................................................................................................ACAGTCAGAAAGTCGCTTTCA................................................................... 21 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACGGTCAGAAAGGCGCTTTCA................................................................... 22 1 1 2.00 2 2 0 0 0 0
................................................................................................................ACAGTCAGAAAGGCGCTTTCT................................................................... 21 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCTCTTT..................................................................... 20 1 1 2.00 2 1 1 0 0 0
...............................................................................................................AACAGTCAGAAAGTCTCTTTCA................................................................... 22 2 1 2.00 2 1 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCACTTTCAC.................................................................. 23 1 1 2.00 2 1 1 0 0 0
...............................................................................................................AACAGCCAGAAAGGCGCTTTCACA................................................................. 24 1 1 2.00 2 0 1 1 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCAG.................................................................. 23 1 1 2.00 2 0 2 0 0 0
...............................................................................................................AACAGTCAGAAAGTCGCTTTCACT................................................................. 24 2 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTTACA................................................................. 24 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGTGCTTTCAC.................................................................. 23 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AGCAGTCAGAAAGGCGCTTTCAT.................................................................. 23 2 1 2.00 2 2 0 0 0 0
..................................................................................................................AGTCAGAAAGGCGCTTTCACA................................................................. 21 0 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCACG................................................................. 24 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAATGGCGCTTTCAC.................................................................. 23 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCATATAGGCGCTTTCA................................................................... 22 2 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCATTCA................................................................... 22 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACCGTCAGAAAGGCGCTTTCA................................................................... 22 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAACGGCGCTTTC.................................................................... 21 1 1 2.00 2 2 0 0 0 0
................................................................................................................ACAGTCAGAAAGGCTCTTTCA................................................................... 21 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTGAGAAAGGCGCTTTCA................................................................... 22 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTAT................................................................... 22 2 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGCCGCTTTCA................................................................... 22 1 1 2.00 2 1 0 1 0 0
...............................................................................................................AACAGTCAGAAACGCGCTTTCAC.................................................................. 23 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AGCAGTCAGAAAGGCGCTTTCACA................................................................. 24 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGATTTCAT.................................................................. 23 2 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCACAA................................................................ 25 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGATAGGCGCTTTCA................................................................... 22 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGTGCTTTCA................................................................... 22 1 1 2.00 2 2 0 0 0 0
...............................................................................................................TACAGTCAGAAAGGCGCTTTC.................................................................... 21 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAAGCGCTTT..................................................................... 20 1 1 2.00 2 2 0 0 0 0
...............................................................................................................GACAGTCAGAAAGGCGCTTTCA................................................................... 22 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTCTCA................................................................... 22 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTCA..................................................................... 20 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCATATAGGCGCTTTGAC.................................................................. 23 3 1 1.00 1 1 0 0 0 0
................................................................................................................ACAGTCAGAAAGTCGCTTTC.................................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAACGGCGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAGGGGCGCTTTCAC.................................................................. 23 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGACTGAAAGGCGCTTTCACA................................................................. 24 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGACCGAAAGGCGCTTT..................................................................... 20 2 1 1.00 1 0 0 1 0 0
...............................................................................................................ACCAGTCAGAAAGGCGCTTTCACT................................................................. 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAGAGGCGCTTTCAC.................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAACGCGCTTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACGGTCAGAAAGGCGTTTTCAC.................................................................. 23 2 1 1.00 1 0 1 0 0 0
...............................................................................................................AGCAGTCAGAAAGGCGCTTTCACT................................................................. 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTCCAC.................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTTTT.................................................................. 23 3 1 1.00 1 1 0 0 0 0
................................................................................................................ACAGTCAGAAAGGCGCTCTCA................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCTCA................................................................. 24 1 1 1.00 1 0 0 1 0 0
................................................................................................................ACAGTCAGAAAGGCGCTTTCG................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGGCAGAACGGCGCTCTCA................................................................... 22 3 1 1.00 1 0 0 1 0 0
...............................................................................................................AACGGGCAGAAAGGCGCTTTCA................................................................... 22 2 1 1.00 1 0 0 1 0 0
................................................................................................................ACAGGCAGAAAGGCGCTTTCACA................................................................. 23 1 1 1.00 1 1 0 0 0 0
................................................................................................................ACAGTCAGAAAGGCGCTTTCACAC................................................................ 24 0 1 1.00 1 0 0 1 0 0
................................................................................................................ACAGTCAGAAACGCGCTTTCACA................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGACGCTTT..................................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AAAAGTCAGAAAGGCGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAAAAAGGCGCTTTCA................................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAAGCGCTTTCACAT................................................................ 25 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCGTTCA................................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGCCGCCTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................ATCAGTCAGAAAGGCTCTTTCACA................................................................. 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AAGAGTCAGAAAGGCGCCTTCACA................................................................. 24 2 1 1.00 1 0 1 0 0 0
...............................................................................................................AACAGCCCGGAAGGCGCTTTCA................................................................... 22 3 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTTAGAAAGGCGCTTTCA................................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCGTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCGTTCAC.................................................................. 23 1 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTGT................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTACA................................................................... 22 1 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGACAGAAAAGCGCTTT..................................................................... 20 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAAACAGGCGCTTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACGGTCAGAAAGGCGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAATGCGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................GACAGTCAGAAAGGCGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGTCTCTTTCAC.................................................................. 23 2 1 1.00 1 0 1 0 0 0
...............................................................................................................AACAGTCACATAGGCGCTTTTA................................................................... 22 3 1 1.00 1 1 0 0 0 0
................................................................................................................AAAGTCAGAAAGGCGATTTCA................................................................... 21 2 1 1.00 1 1 0 0 0 0
................................................................................................................ACAGTCAGAAAGTCGCTTTCACA................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AAGAGTCAGAAAGGCGCTTTCT................................................................... 22 2 1 1.00 1 0 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTAACTC................................................................ 25 2 1 1.00 1 1 0 0 0 0
...............................................................................................................TACAGTCAGAAAGGCGATTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCAAAAA............................................................... 26 3 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCTCATTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCATAAATGCGCTTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGATTTAA................................................................... 22 2 1 1.00 1 1 0 0 0 0
................................................................................................................AGAGTCAGAAAGGCGCTTTCA................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGATAGGCGCTTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
................................................................................................................ACAGTCAAAAAGGCGCTTTCA................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAAAAAGGCGCTTTCAC.................................................................. 23 1 1 1.00 1 1 0 0 0 0
................................................................................................................ACAATCAGAAAGGCGCTTTCAC.................................................................. 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGGCAGCAAGGCGCTTTCAT.................................................................. 23 3 1 1.00 1 0 0 1 0 0
...............................................................................................................AGCAGTCAGAAAGGCGCTTT..................................................................... 20 1 1 1.00 1 0 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCTCTTTCACT................................................................. 24 2 1 1.00 1 0 1 0 0 0
...............................................................................................................AACAGATAGAAAGGCGCTTT..................................................................... 20 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGAGAGGCGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
................................................................................................................ACAGTCAGAAAGGCGCTTTCC................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTCA.................................................................... 21 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCATA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGACAGGCGCTTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................ACCAGTCAGAAAGGCGCTTTCAC.................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AAGAGTCAGAAAGGCGCTTTCAC.................................................................. 23 1 1 1.00 1 0 1 0 0 0
...............................................................................................................AACAGACAGAAAGGCGCTTTC.................................................................... 21 1 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAAACAGGCGCTTTAA................................................................... 22 3 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCACTTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGATAGGCGCTTTCACTT................................................................ 25 3 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGAGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAGAGGAGCTTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAATGGCGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AAAAGTCAGAAAGGCGCTTTCA................................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCACATAGGCGCTTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCCCTTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AAGAGTCAGAAAGGCGCTTTCA................................................................... 22 1 1 1.00 1 0 1 0 0 0
...............................................................................................................AACAGTCAGTAAGGCGCTTTCACT................................................................. 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAACGGCGCCTTCA................................................................... 22 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGAAACGCGCTTG..................................................................... 20 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AGCAGTCAGAAAGGCGCTTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCATATAGGCGCTTTGACA................................................................. 24 3 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAAGCGCTTTCT................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTAAT.................................................................. 23 2 1 1.00 1 1 0 0 0 0
....................................................................................................................TCAGAAAGGCGCTTTCAT.................................................................. 18 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAAAAGGGCGCTTTCAC.................................................................. 23 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTGTCCC.................................................................. 23 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTAACAT................................................................ 25 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGATCTCA................................................................... 22 2 1 1.00 1 0 1 0 0 0
................................................................................................................AAAGTCAGAAAGGCGCTTTCA................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAATGGCGCTTTCT................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCATAAAGGCGCTTTAA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACATTCAGAAAGGCGCTTTAA................................................................... 22 2 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................CGAGACGGGCAGTTCTTGGACTG....... 23 3 1 1.00 1 0 0 1 0 0
...............................................................................................................AAAAGTCAGAATGGCGCGTTC.................................................................... 21 3 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGACAGGCGCTTTCACT................................................................. 24 2 1 1.00 1 1 0 0 0 0
................................................................................................................ACAGTCAGCAAGGCGCTTTCA................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGGCAGAAAGGCGCTTT..................................................................... 20 1 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTTAC.................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTTAGAAAGGCGCTTTGACA................................................................. 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................TACAGTCAGAAAGGCGCTTTCA................................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................GACAGTCAGAAAGGCGCTTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGAGCTTTAA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTAAGAAAGGCGCTTTCT................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCATAAAGTCGCTTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCCTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGCCAGCAAGGCGCTTTCACA................................................................. 24 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGAAAGACGCTTTCAC.................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCATAAAAGCGCTTTCACA................................................................. 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACGGTCAGAAAGGCGCTTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGCCACATAGGCGCTTTCA................................................................... 22 3 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCATAAAGGCTCTTTCACA................................................................. 24 2 1 1.00 1 1 0 0 0 0
................................................................................................................ACAGTCAGAAAGGCGCTTTCAT.................................................................. 22 1 1 1.00 1 0 1 0 0 0
...............................................................................................................AACAGTGAGAAAGGCGCTTTAACAA................................................................ 25 3 1 1.00 1 1 0 0 0 0
..................................................................................................................AGTCAGAAAGGCGCTTTCA................................................................... 19 0 1 1.00 1 0 0 1 0 0
................................................................................................................ACAGTCAGAAAGGCGCCTTCA................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTCTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAATGGCGCTTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAATGCGCTTTCACTT................................................................ 25 3 1 1.00 1 1 0 0 0 0
................................................................................................................ACAGTCAGTAAGGCGCTTTCAC.................................................................. 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCCTTCAT.................................................................. 23 2 1 1.00 1 1 0 0 0 0
..................................................................................................................AGTCAGAAAGGCTCTTTCA................................................................... 19 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCCCTTTCAC.................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................TGCAGTCAGAAAGGCGCTTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTCCT................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACACTCAGAAAGGCGCTTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGGCAGAAAGGCGCGTTCAC.................................................................. 23 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AAAAGTAAGAAAGGCGCTTTCA................................................................... 22 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AACATTCAGAAAGGCGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGCAATGCGATTTCAC.................................................................. 23 3 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTTACAT................................................................ 25 2 1 1.00 1 1 0 0 0 0
...............................................................................................................ATCAGTCAGAAAGGCGCTTTCA................................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGACAGGCGCTTTCAT.................................................................. 23 2 1 1.00 1 1 0 0 0 0
.............................................................................................................TCAACAGTCAGAAAGGCGCTTTCA................................................................... 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCATAAAGGCGCTTTGA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCACATT............................................................... 26 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACACTCAGAAAGGCGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGTCGCTTTCAT.................................................................. 23 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCACAGAGGCGCTTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGACAGAAAGGCGCTTT..................................................................... 20 1 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGAAGGGCGCTTTCAT.................................................................. 23 2 1 1.00 1 1 0 0 0 0
.....................................................................TATGGAAGGCCTCTCGACTGCTTT........................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAGGGCGCTTTCT................................................................... 22 2 1 1.00 1 0 1 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTGAT.................................................................. 23 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAATGCTCTTTCAC.................................................................. 23 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCATAAAGGTGCTTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
.................................................................................................................AACTCAGAAAGGCGCTTTCA................................................................... 20 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGACCTTTCA................................................................... 22 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCATACAGGCGCTTTCACA................................................................. 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGACGCCTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGGCAGAAAGGCGCTTTCA................................................................... 22 1 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGAAAAGCGCTTTC.................................................................... 21 1 1 1.00 1 1 0 0 0 0
................................................................................................................ACAGTCAGAAATGCGCTTTC.................................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTTCATG................................................................. 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGTCGCTTTCAC.................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTAAGAAAGGCACTTTGA................................................................... 22 3 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTAAGAAAGGCGCTTTCAC.................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AAAAGTCCGAAAGGCGCTTTCAT.................................................................. 23 3 1 1.00 1 0 0 1 0 0
...............................................................................................................AATAGTCAGAAAGGCGCTTTCAC.................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACGGTCAGAAAGGCGCTTTCAT.................................................................. 23 2 1 1.00 1 0 1 0 0 0
................................................................................................................ACAGTCTGAAAGGCGCTTTCACA................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................ATCAGTCAGAAAGGCGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACATTCAGAAAGGCGCTTTCT................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGTCACTTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
................................................................................................................ACAGTCAGAAAGGCGCTTTT.................................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGGAAGGCCCTTTCACA................................................................. 24 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCCGAAAGGCGCTTTCACA................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGACAGGCTCTTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................ATCAGTCAGAAAGGCGCTTTCAC.................................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................................CTCAGTCAGAAAGGCGCTTTCAC.................................................................. 23 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAGAAAGGCGCTTCAA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCATAAAGGCTCTTTCA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTGAGAAAGGCGCTTTGA................................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCAAAAAGGCGCTTTCACA................................................................. 24 1 1 1.00 1 0 1 0 0 0
.......................................................................................................................................ACAAGTGAGATCCTGCGCCTGCA.......................................... 23 3 1 1.00 1 0 0 1 0 0
...............................................................................................................AACAGTCAGAAAGACGCATTCAC.................................................................. 23 2 1 1.00 1 1 0 0 0 0
................................................................................................................GCAGTCAGAAAGGCGCTTTCAC.................................................................. 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AACAGTCGAAAAGGCGCTTGCA................................................................... 22 3 2 0.50 1 0 0 1 0 0

Anti-sense strand reads

CTTAGGGCTGATGTTTGCAGGTAAGGGACGCGATACTCCACGGCAGGTACTAGGCTTACTACGTGTACCATACCTTCCGGATAGCTGACGATACACATGAAGTCCTACTTATTGTCAGTCTTTCCGCGAAAGTGTGGTTCACTCTAGGCCGGGGACGTCTGCAGCGCAGGGCACTGCCCGTCAAGGACTTGACAGTTTAT

****************************************************..(((.(((.((((.((((((((((.(((((((.(((..((........))..))).))))).)).)))).)))))).)))).)))..))).******************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106

head

 M044

female body

 V055

head

 M058

embryo

 V105

male body		 V039

embryo
.................................................................................................................................................................................CCGTCAAGGACTTGACAGTTT.. 21 0 1 4.00 4 3 0 0 0 1 0
.................................................................................................................................................................................CCGTCAAGGACTTGACAGTT... 20 0 1 3.00 3 2 1 0 0 0 0
.................................................................................................................................................................................CCGTCAAGGACTTGACAGTTTA. 22 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................CCCGTCAAGGACTTGACAGGT... 21 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................................................................GGTTCACTCTAGGCCGGGGACGT.......................................... 23 0 1 1.00 1 0 1 0 0 0 0
....................................................................CATACCTTCCGGATAGCTGAC............................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................CGTCAAGGACTTGACAGTT... 19 0 1 1.00 1 1 0 0 0 0 0
...................................................................CCATACCTTCAGGATCTCTGA................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 1
................................................................................................................................................................................CCCGACTAGGACTTCACAGTT... 21 3 2 0.50 1 0 0 1 0 0 0
...........................................................................TCCGGATAGCGGAAGATA........................................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0
............................................................................CCGGATAGCGGAAGATAC.......................................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0
...........................AGGCGATACTCGACGGCA........................................................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0
....................................................................................................................................................CCCGGGTCGTCTGCAGCG.................................. 18 2 5 0.20 1 0 1 0 0 0 0
.....................TAGGTGACGCGATACGCCA................................................................................................................................................................ 19 3 19 0.11 2 0 0 2 0 0 0
..................................................................................................................................................................AGGGCACCGCACTGCCCGT................... 19 3 11 0.09 1 0 0 1 0 0 0
..................................................................................................................................................................AGCGTACCGCACTGCCCG.................... 18 3 20 0.05 1 0 0 1 0 0 0
............................................................................................CCACATGAAGTCCTAGTTT......................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13417:2460965-2461164 - dan_230 confident GAAT------------------CCCGACTACAAACGTCCATTCCCTGCGCTATGAGGTGCCGTCCATGATCCGAATGATGCACATGGTATGGAAGG-CC--TATCGACTGCTATGTGTACTTCAGGATGA-------ATAACAGTCAGAAAGGCGCTTTCACACCAAGTGAGATCCGGCCCCTGCAGACGT------------------------------------------------------------------------------------CGCGTCCCGTGACGGGCAGTTCCTGAACTGTCAAATA
droBip1 scf7180000395874:32979-33175 - GAAA------------------CCCAACTGC---CGTCCTTTCACTGGGCCATTATCTGCCGTCCATGATCTTACTGATGCACATGGTATGGAGGG-CC--TATCTACTGCTATGTGTACCTCAGGATGA-------ATAACAGTCAGAAAGGCGCTTTCACACCAAGTGAGATCCGGCCCCTGCAAACGT------------------------------------------------------------------------------------CGCGTCCCGTGACGGGCAGTTCCTGAACTGTCAAATA
droKik1 scf7180000302517:1186181-1186216 + GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCGTGACAGGCAGTTCCTGAAGTGTCAAATA
droEle1 scf7180000491217:459290-459311 + GAAT------------------CTCGATTCCGACCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA
droRho1 scf7180000777310:10085-10138 + TAA--------------------------------------------------------------------------------------------------------------------------------------ATAACTGTTAGAAAAGCTCGCTCAGAGCAAATGAGAGACACCTGCTGCA----------------------------------------------------------------------------------------------------------------------------GA
droTak1 scf7180000415812:136056-136115 + GACG----------------------------------------------------------------------------CAAGGGGGGCGGAAGG-ACT-TATGCGGTGCGAGGTGTGCTTCAGGATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGT
droEug1 scf7180000408987:110771-110831 + GCGC--------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGCAACTGCTGCGCCACAGCCTCTGCTGACGT------------------------------------------------------------------------------------CGCTGCCGGCGAAAAGCACTTC---------------
dm3 chr2L:21773663-21773688 - AAAG------------------CCCGACCCCAAACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA------------------------------TTCC
droSim2 2r:2586926-2586957 + GCGC----------------------------------------------TATGGGGCGCCGTATATCACCCAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA
droYak3 2L:18553219-18553275 - TCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGGTGAGATTCAGCTCCTTCAGATGC------------------------------------------------------------------------------------C-------------TCCAGTGCCACAAATGACGACCA
droWil2 scf2_1100000004909:7960636-7960818 + TGG-----------------------------------------------------------------------------------------AAGG-CC--ATCCGATTGTTATGTATCTATATGCATAA-TACCCGATAACAGTCAGAAAGGCGCTTTCACTTCATGTGC--------------CGA---ATAGAGTCAACGCAGAACAAGCTAAAATTGTTATTGTG-----------TTATACCAGAATCAAGAGCTA-CT-----AA--TTGGCGTCTTGTGACGGGCAGTTCCTGAAGTGTCAAATA
droVir3 scaffold_13042:903081-903277 - GCAT-------------------------------------------------------------------------------ATGAAGCGAAAGG-CCCTTTTCGACTGCTATGTGCATTTTTTGACTAGTCATAGATAACAGTCTGAAAGGGCCTTTTGGCTCAGATGC--------------AAAC--ACAGCGATAACG--------------ATAACGATAACGATAACAATAACGATAACTTAA-----GCGATAACGATAACGATAAGCGCATCTGGTGACTAGCCGTTCCTGAAGTGTCAAATA
droMoj3 scaffold_6496:2844119-2844205 - AGTCACTCTGGCAGCAATTAAACTCACCTGC---AGCTTTT---------------------------------------------------------------GCAGTG-----------CCTT----------------------------------------------------------------GT------------------------------------------------------------------------------------CCAGTCCCGTTATGTGCAGCTCCTGGGATTTCAAATC
droGri2 scaffold_15081:2041204-2041374 - dgr_24 candidate-rescued CATT--------------------------------------------------------------------------------TGAGATGAAAGGGCCTTTTTTAGCTGCTATGTGAATTTTTCGACTAATC----ATAACAGTTAAGAGGGC-CTATCCTCTCAAATGAC--------------GC---AC--GGGCAACA--------------GCATTCGTGGCG-----------GGGAATCTGA-----GTGAGCCCG-----AG--GATGCATCTGGTAACTAGCCGTTCCTGTGTAGCCAAATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GAAT------------------CCCGACTACAAACGTCCATTCCCTGCGCTATGAGGTGCCGTCCATGATCCGAATGATGCACATGGTATGGAAGG-CC--TATCGACTGCTATGTGTACTTCAGGATGA-------ATAACAGTCAGAAAGGCGCTTTCACACCAAGTGAGATCCGGCCCCTGCAGACGT------------------------------------------------------------------------------------CGCGTCCCGTGACGGGCAGTTCCTGAACTGTCAAATASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCA.......................................................................................................................................................2213098.003098500712716306
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCAC......................................................................................................................................................231887.0088750130746105
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACA.....................................................................................................................................................241548.005487002142397
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTC........................................................................................................................................................211187.0018700141748
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCA.......................................................................................................................................................211133.00133000410623
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCAT......................................................................................................................................................231127.00127000311014
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCT.......................................................................................................................................................221123.00123000510414
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACT.....................................................................................................................................................24180.008020036312
...........................................................................................................................................AACAGTCAGAAAGGCGCTTT.........................................................................................................................................................20172.00721003644
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCAC......................................................................................................................................................22124.00242003136
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCACA.....................................................................................................................................................23123.00232001128
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACAT....................................................................................................................................................25120.00200000182
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCATT.....................................................................................................................................................24118.00180001152
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTT........................................................................................................................................................21114.00140000140
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCATTT....................................................................................................................................................25110.0010000091
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCAA......................................................................................................................................................2319.009000153
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACAC....................................................................................................................................................2518.008000152
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCTT......................................................................................................................................................2317.007000070
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACTT....................................................................................................................................................2516.006000060
............................................................................................................................................ACAGTCAGAAAGGCGCTTT.........................................................................................................................................................1916.006000141
...........................................................................................................................................AACAGTCAGAAAGGCGCTT..........................................................................................................................................................1915.005000050
.........................................................................................TGGAAGG-CC--TATCGACTGCTAT......................................................................................................................................................................................................2214.004200110
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCC.......................................................................................................................................................2214.004000040
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTG........................................................................................................................................................2114.004000040
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTTT.......................................................................................................................................................2214.004000040
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTA........................................................................................................................................................2114.004000031
............................................................................................................................................ACAGTCAGAAAGGCGCTTTC........................................................................................................................................................2014.004000031
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCG.......................................................................................................................................................2213.003000021
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCTTT.....................................................................................................................................................2413.003000030
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCT.......................................................................................................................................................2112.002000020
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCAG......................................................................................................................................................2312.002000002
..............................................................................................................................................AGTCAGAAAGGCGCTTTCACA.....................................................................................................................................................2112.002000020
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACG.....................................................................................................................................................2412.002000020
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTAT.......................................................................................................................................................2212.002000020
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACAA....................................................................................................................................................2512.002000020
...........................................................................................................................................AACAGTCAGAAAGGCGCTCA.........................................................................................................................................................2011.001000010
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTTTT......................................................................................................................................................2311.001000010
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCG.......................................................................................................................................................2111.001000010
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCACAC....................................................................................................................................................2411.001000100
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTGT.......................................................................................................................................................2211.001000010
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCC.......................................................................................................................................................2111.001000010
...........................................................................................................................................AACAGTCAGAAAGGCGCTTCA........................................................................................................................................................2111.001000010
................................................................................................................................................TCAGAAAGGCGCTTTCAT......................................................................................................................................................1811.001000010
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCAT......................................................................................................................................................2211.001000001
..............................................................................................................................................AGTCAGAAAGGCGCTTTCA.......................................................................................................................................................1911.001000100
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACATT...................................................................................................................................................2611.001000010
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCATG.....................................................................................................................................................2411.001000010
............................................................................................................................................ACAGTCAGAAAGGCGCTTTT........................................................................................................................................................2011.001000010
droBip1
GAAA------------------CCCAACTGC---CGTCCTTTCACTGGGCCATTATCTGCCGTCCATGATCTTACTGATGCACATGGTATGGAGGG-CC--TATCTACTGCTATGTGTACCTCAGGATGA-------ATAACAGTCAGAAAGGCGCTTTCACACCAAGTGAGATCCGGCCCCTGCAAACGT------------------------------------------------------------------------------------CGCGTCCCGTGACGGGCAGTTCCTGAACTGTCAAATASizeHit CountTotal NormTotal
No Reads
droKik1
GCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCGTGACAGGCAGTTCCTGAAGTGTCAAATASizeHit CountTotal NormTotal
No Reads
droEle1
GAAT------------------CTCGATTCCGACCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCASizeHit CountTotal NormTotal
No Reads
droRho1
TAA--------------------------------------------------------------------------------------------------------------------------------------ATAACTGTTAGAAAAGCTCGCTCAGAGCAAATGAGAGACACCTGCTGCA----------------------------------------------------------------------------------------------------------------------------GASizeHit CountTotal NormTotal
No Reads
droTak1
GACG----------------------------------------------------------------------------CAAGGGGGGCGGAAGG-ACT-TATGCGGTGCGAGGTGTGCTTCAGGATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAGTSizeHit CountTotal NormTotal
No Reads
droEug1
GCGC--------------------------------------------------------------------------------------------------------------------------------------------------------TGTCGCAACTGCTGCGCCACAGCCTCTGCTGACGT------------------------------------------------------------------------------------CGCTGCCGGCGAAAAGCACTTC---------------SizeHit CountTotal NormTotal
No Reads
dm3
AAAG------------------CCCGACCCCAAACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA------------------------------TTCCSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
No Reads
droSim2
GCGC----------------------------------------------TATGGGGCGCCGTATATCACCCAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
No Reads
droYak3
TCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGGTGAGATTCAGCTCCTTCAGATGC------------------------------------------------------------------------------------C-------------TCCAGTGCCACAAATGACGACCASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
No Reads
droWil2
TGG-----------------------------------------------------------------------------------------AAGG-CC--ATCCGATTGTTATGTATCTATATGCATAA-TACCCGATAACAGTCAGAAAGGCGCTTTCACTTCATGTGC--------------CGA---ATAGAGTCAACGCAGAACAAGCTAAAATTGTTATTGTG-----------TTATACCAGAATCAAGAGCTA-CT-----AA--TTGGCGTCTTGTGACGGGCAGTTCCTGAAGTGTCAAATASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACT.....................................................................................................................................................241921.009211518561039
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCA.......................................................................................................................................................221409.0040900377131
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCAC......................................................................................................................................................231280.0028010251226
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCACT.....................................................................................................................................................23170.0070805525
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCA.......................................................................................................................................................21150.0050004406
..........................................................................................................................................TAACAGTCAGAAAGGCGCTTTCACT.....................................................................................................................................................25134.0034003022
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCAC......................................................................................................................................................22133.0033003300
..........................................................................................................................................TAACAGTCAGAAAGGCGCTTTCA.......................................................................................................................................................23121.0021001803
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTC........................................................................................................................................................21119.0019001702
...................................................................................................................................................................................................................................................................................................CAGTTCCTGAAGTGTCAAATA21114.0014001301
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACTT....................................................................................................................................................2519.00900900
...................................................................................................................................................................................................................................................................................................CAGTTCCTGAAGTGTCAAAT.2018.00800800
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACA.....................................................................................................................................................2417.00700700
...........................................................................................................................................AACAGTCAGAAAGGCGCTTT.........................................................................................................................................................2016.00600600
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACC.....................................................................................................................................................2415.00520210
....................................................................................................................................................................................................................................................................................................AGTTCCTGAAGTGTCAAATA2015.00500500
..........................................................................................................................................TAACAGTCAGAAAGGCGCTTTCAC......................................................................................................................................................2414.00400400
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCC.......................................................................................................................................................2213.00300300
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCAT......................................................................................................................................................2313.00300300
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCT.......................................................................................................................................................2213.00300300
.................................................................................................................................................................................................................................................................................................GGCAGTTCCTGAAGTGTCAAAT.2213.00300300
..............................................................................................................................................AGTCAGAAAGGCGCTTTCACT.....................................................................................................................................................2112.00200200
.................................................................................................................................................................................................................................................................................................GGCAGTTCCTGAAGTGTCA....1912.00200200
..........................................................................................................................................TAACAGTCAGAAAGGCGCTTTT........................................................................................................................................................2212.00200200
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCACA.....................................................................................................................................................2312.00200200
TGG-----------------------------------------------------------------------------------------AAGG-CC--ATCCGATTGTTA.......................................................................................................................................................................................................2111.00100100
..........................................................................................................................................TAACAGTCAGAAAGGCGCTTTC........................................................................................................................................................2211.00100100
..........................................................................................................................................TAACAGTCAGAAAGGCGCTTT.........................................................................................................................................................2111.00100100
.............................................................................................................................................CAGTCAGAAAGGCGCTTTCA.......................................................................................................................................................2011.00100100
..................................................................................................................................................................................................................................................................................................GCAGTTCCTGAAGTGTCAAAA.2111.00100100
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCAA......................................................................................................................................................2311.00100100
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCC.......................................................................................................................................................2111.00100100
.........................................................................................................................................ATAACAGTCAGAAAGGCGCTTTCA.......................................................................................................................................................2411.00100100
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCACC.....................................................................................................................................................2311.00110000
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCACTA....................................................................................................................................................2511.00100100
...........................................................................................................................................AACAGTCAGAAAGGCGCT...........................................................................................................................................................1811.00100001
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCT.......................................................................................................................................................2111.00100100
..........................................................................................................................................TAACAGTCAGAAAGGCGCTTTCACA.....................................................................................................................................................2511.00100100
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCAA......................................................................................................................................................2211.00100100
...........................................................................................................................................AACAGTCAGAAAGGCGCTTTCG.......................................................................................................................................................2211.00100100
.................................................................................................................................................................................................................................................................................................GGCAGTTCCTGAAGTGTCAA...2011.00100100
.............................................................................................................................................CAGTCAGAAAGGCGCTTTCACT.....................................................................................................................................................2211.00100100
............................................................................................................................................ACAGTCAGAAAGGCGCTTTC........................................................................................................................................................2011.00100100
............................................................................................................................................ACAGTCAGAAAGGCGCTTTCG.......................................................................................................................................................2111.00100100
..........................................................................................................................................TAACAGTCAGAAAGGCGCTT..........................................................................................................................................................2011.00100100
............................................................................................................................................ACAGTCAGAAAGGCGCTTT.........................................................................................................................................................1911.00100100
droVir3
GCAT-------------------------------------------------------------------------------ATGAAGCGAAAGG-CCCTTTTCGACTGCTATGTGCATTTTTTGACTAGTCATAGATAACAGTCTGAAAGGGCCTTTTGGCTCAGATGC--------------AAAC--ACAGCGATAACG--------------ATAACGATAACGATAACAATAACGATAACTTAA-----GCGATAACGATAACGATAAGCGCATCTGGTGACTAGCCGTTCCTGAAGTGTCAAATASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAAAT.22123787.002378722020061638221777778000050112027343143335476737741469501021480201212144500000000000000000000037501302212110000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTCC......................................................................................................................................................23112016.0012016408051447615365000010001016235021011116611575662355016120000815880000000000000000000008800000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATGT....................................................................................................................................................................................................23111457.0011457140103113142663357000030101142960041503235232373533872245000002360000000000000000010103401111152120002001
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAA...2018282.008282508036881169023000000000101122312101312781403559152606850100457300000000000000000000010200000000000300000
............................................................................................AAGG-CCCTTTTCGACTGCTAT......................................................................................................................................................................................................2118123.008123120911138331023100030002024830021522118150967028340203212012640000000000000000020002102210120000300000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAAA..2116981.006981190603655815454790000000110744207001211261028401121304930000347600000000000000000100014900100003000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTC.......................................................................................................................................................2216414.0064141010557770015600001000104493130022116497233014510540000037230000000000000000000002101000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATG.....................................................................................................................................................................................................2216192.006192220150176159147000010000221100232331830129942318761122001011430000000000000000000001700267016000310220
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTTC.......................................................................................................................................................2315649.00564921101329202142000000000048220100011211101030012350370100025240000000000000000000003000000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTTCC......................................................................................................................................................2415585.0055855030331920120330001000006540010001867725331132904690000155000000000000000000000011600000000000000010
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTT........................................................................................................................................................2214717.004717003011951130110500103210012080000000133790424210461176010013470000000000000000000001000000000000000000
.............................................................................................AGG-CCCTTTTCGACTGCTATGT....................................................................................................................................................................................................2214034.0040342020052276010400000000001291012012119479028412080810000089000000000000000000000600011003003000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTT........................................................................................................................................................2313743.00374300010123381060000020000020321312221095787181799014901104223000000000000000000000804000022001000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTTCC......................................................................................................................................................2513693.00369300201208000110000000000040510201005354701928740407000004250000000000000000000005900000010000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTT.........................................................................................................................................................2213676.003676001041613125173000011001023011121248467021357410249000043730000000000000000000001102000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTTC.......................................................................................................................................................2413261.0032611000213800268000000001030410100017495761296780261000033290000000000000000000001502000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTT........................................................................................................................................................2112667.002667001011490820500000000000930000002738554116591111200002173000000000000000000000200000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTT.........................................................................................................................................................2111583.0015830000159255044000010011064100000024123481277117700000336000000000000000000000700000000000000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCA....1911480.001480006001292401650000000000147002001020925886261015200001940000000000000000000002600000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATGTC...................................................................................................................................................................................................2411412.0014124020026010430000000000910000000344228934630451000060000000000000000002000900000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTA.......................................................................................................................................................................................................2011384.0013841103324001601400000000007600101103122251024250720000169000000000000000001100400000001110100000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTTC......................................................................................................................................................231990.009900000057000280000000000500000000293240351910480000048000000000000000000000000000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCT........................................................................................................................................................................................................191829.0082943110056037016000010001070100000012196382120720000244000000000000000000100300020034300100000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAAATT231771.00771000015702716200000000017800000001221085714005400000460000000000000000000001700000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATC.....................................................................................................................................................................................................221719.00719902012400050000000010521000000137108532280360000154000000000000000000000200000002120000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAAATA231703.0070300200260901900000000009700000121211015515705211000400000000000000000000001500300001000000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAAATC231681.00681602006110070000000000860000000941035614803700000290000000000000000000005100000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTC........................................................................................................................................................231555.0055500001220001100000000106000000009367341150560000088000000000000000000000700000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTC........................................................................................................................................................221553.0055300100470001100000000007100000007772231080530000085000000000000000000000500000000000000000
.............................................................................................AGG-CCCTTTTCGACTGCTATG.....................................................................................................................................................................................................211533.0053310500601005000000000022000111013512840150070000114000000000000000000001200011000000000001
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTT.......................................................................................................................................................221515.005150000092960120000000000700000101671131566090001017000000000000000000000000000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATCC....................................................................................................................................................................................................231435.004354000010000100000000004200000004132491970260000030000000000000000000000100000000200000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTCC.......................................................................................................................................................241432.0043220000280101300000000006100000012939259106900000630000000000000000000001000000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTCC.......................................................................................................................................................221408.004080000057000140000000000690000000252615600760000060000000000000000000000600000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTCC.......................................................................................................................................................231399.0039920200310001200000000006500100003827197805800000520000000000000000000001400000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTCT......................................................................................................................................................231396.003960000042000310000000000460010000595417530450000147000000000000000000000000000000000000000
.............................................................................................AGG-CCCTTTTCGACTGCTATGTC...................................................................................................................................................................................................231379.00379001019000700001000002600000008260381210210000011000000000000000000000100000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTT.........................................................................................................................................................201360.0036000001190180100000100000150000000587119680320000146000000000000000000000100000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTC........................................................................................................................................................211304.00304000003200010000000000022000000043459670330000042000000000000000000000100000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTT..........................................................................................................................................................211284.00284000001301105000000000013100000064479590280000034000000000000000000000000000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTCCT.....................................................................................................................................................241190.0019000000120007000000000033000000023238340280000021000000000000000000000100000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCT...........................................................................................................................................................201186.0018620000607012000000000018002000018144140320000051000000000000000000000200000003100000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTTCT......................................................................................................................................................241159.0015900000120001700000000002100000003719914080000021000000000000000000000100000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTCA......................................................................................................................................................231146.001460000130007000000000015000000116207380170000019000000000000000000000200000000000000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTC.....181129.0012900000230240320000000000140000000353809000008000000000000000000000000000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTTTC......................................................................................................................................................241121.00121000004000200000000001600000003530514040000011000000000000000000000000000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTCCC......................................................................................................................................................251107.0010720000800010000000000220000000953280110000014000000000000000000000400000000000000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCC....191105.001050000012000150000000000150000000767160130000012000000000000000000000200000000000000000
............................................................................................................................................ACAGTCTGAAAGGGCCTTTTCC......................................................................................................................................................221103.001030000019000200000000001100000003156180170000012000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAAAA.221100.0010000001703040000000000120000000161362307000003000000000000000000000500000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTTT.......................................................................................................................................................23199.0099000001010040000000000200000003116417030000010000000000000000000000100000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTTCT......................................................................................................................................................25198.00980000030001000000000001000000002514212011000009000000000000000000000200000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTTTC......................................................................................................................................................25196.00960000060000000000000070000000362331302000006000000000000000000000000000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATTC....................................................................................................................................................................................................23196.0096201002000200000000005000000033883101000002000000000000000000000000000010000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTCCC......................................................................................................................................................23196.0096100001100010000000000240000000640190150000113000000000000000000000100000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTC.......................................................................................................................................................................................................20190.0090201001301000000000000700000001015517011000006000000000000000000000200000000000000000
..................................................................................................CCTTTTCGACTGCTATGT....................................................................................................................................................................................................18189.008900000101412400000000007000000051133012000008000000000000000000000000000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTTCA......................................................................................................................................................24181.00810000040005000000000090000000189217010000006000000000000000000000100000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTCT.......................................................................................................................................................22181.00810000090007000000000070000000169113020000014000000000000000000000100200000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATGTCT..................................................................................................................................................................................................25180.00800000010001000000000040000000161633602000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CGTTCCTGAAGTGTCAAATA20175.0075000009050700000000004000000099111040000012000000000000000000000400000000000000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAC...20171.00710000017000000000000003200000000000019000003000000000000000000000000000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTCCC......................................................................................................................................................24169.006910000500000000000000100000000513160100000012000000000000000000000600000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTTT.......................................................................................................................................................24167.0067000002040100000000002000001128144601000003000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAAC..21165.0065200007010000000000002300000003015016000006000000000000000000000100000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTC.........................................................................................................................................................22160.0060000008000000000000005000000073516050000011000000000000000000000000000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTA.......................................................................................................................................................22159.0059000012220100000000004000010022711202000002000000000000000000000000000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTT..........................................................................................................................................................20159.00590000020400000000000020000000514710050000010000000000000000000000000000000000000000
.............................................................................................AGG-CCCTTTTCGACTGCTAT......................................................................................................................................................................................................20155.00550000000101000000000030000000131231604000001000000000000000001000000000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATT.....................................................................................................................................................................................................22154.0054000001000000000000001000000091212603000001000000000000000000000000000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTTCA......................................................................................................................................................25153.0053000001000400000000005000000012531403000005000000000000000000000100000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTTCCT.....................................................................................................................................................26146.00460000010001000000000060000000982806000003000000000000000000000200000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTTCCT.....................................................................................................................................................25143.00430000040002000000000040000000441807000008000000000000000000000100000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTTCT.....................................................................................................................................................24139.003900000100010000000000100000101690503000002000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TAGCCGTTCCTGAAGTGTCAA...21137.003700000601000000000000400000004431004000001000000000000000000000000000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATGTT...................................................................................................................................................................................................24137.0037001000010100000000002000000012113500000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CGTTCCTGAAGTGTCAAAT.19132.00320000020012000000000090000000440602000002000000000000000000000000000000000000000
.................................................................................................CCCTTTTCGACTGCTATGT....................................................................................................................................................................................................19128.00282000020107000000000040000000230104000002000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAAT..21127.00270000020000000000000090000000341402000002000000000000000000000000000000000000000
............................................................................................................................................ACAGTCTGAAAGGGCCTTTTC.......................................................................................................................................................21127.00270000050001000000000020000000311905000000000000000000000000000000000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTCTC......................................................................................................................................................23126.00260000010002000000000040000000431403000003000000000000000000000100000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATGC....................................................................................................................................................................................................23124.002410000001010000000000000000004201202000001000000000000000000000000000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTCT.......................................................................................................................................................23124.00240000010002000000000090000000221101000005000000000000000000000000000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTG.......................................................................................................................................................22123.00230000010000000000000010000000720902000001000000000000000000000000000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTTCCA.....................................................................................................................................................25123.00230000050000000000000030000000151202000004000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAAAC.22121.00210000020002000000000030000000301603000000000000000000000000000100000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTA........................................................................................................................................................23120.00200000000001000000000040000000330501000003000000000000000000000000000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTCCA.....................................................................................................................................................24120.00200000110001000000000030000000112203000003000000000000000000000200000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTTA.......................................................................................................................................................24119.00190000010100000000000030001100641000000000000000000000000000000000000001000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGC.............................................................................................................................................................18119.00190000020001000000000090000000100101000004000000000000000000000000000000000000000
.............................................................................................AGG-CCCTTTTCGACTGCTATGTT...................................................................................................................................................................................................23117.00170000000101000000000000000000322701000000000000000000000000000000000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATA.....................................................................................................................................................................................................22117.00170000000000000000000020000000802201000001000000000000000000000000000000000100000
..........................................................................................................................................TAACAGTCTGAAAGGGCCT...........................................................................................................................................................19116.00160000020103000000000010000000010202000004000000000000000000000000000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTT..........................................................................................................................................................19115.00150000000101000000000010000000520103000001000000000000000000000000000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTAC......................................................................................................................................................23115.001500000200000000000000110000000001100000000000000000000000000000000000000000000000
.............................................................................................AGG-CCCTTTTCGACTGCTATGTCT..................................................................................................................................................................................................24115.00150000000000000000000000000000231800000001000000000000000000000000000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTTTA.......................................................................................................................................................23115.00150000020100000000000000000000370100000001000000000000000000000000000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTCT.......................................................................................................................................................24115.00150000010003000000000000000000501101000003000000000000000000000000000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTC.........................................................................................................................................................21115.00150001010000000000000020000000040500000002000000000000000000000000000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTTCA.......................................................................................................................................................24114.00140000010000000000000000000000331203000010000000000000000000000000000000000000000
..............................................................................................................................................AGTCTGAAAGGGCCTTTTCC......................................................................................................................................................20114.00140000020000000000000010000000211202000003000000000000000000000000000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATGA....................................................................................................................................................................................................23114.00140000000000000000000010000000261301000000000000000000000000000000000000000000000
.........................................................................................................................................ATAACAGTCTGAAAGGGCCTTCC........................................................................................................................................................23113.00130000020000000000000020000000001402000002000000000000000000000000000000000000000
............................................................................................................................................ACAGTCTGAAAGGGCCTTTTTC......................................................................................................................................................22113.00130000010000000000000000000000420600000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TAGCCGTTCCTGAAGTGTCAAA..22112.00120000000001000000000010000000421101000001000000000000000000000000000000000000000
..........................................................................................................................................TAACAGTCTGAAAGGGCCTTCC........................................................................................................................................................22112.00120000000000000000000070000000100202000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GTTCCTGAAGTGTCAAAT.18112.00120000000100000000000030000000220202000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TAGCCGTTCCTGAAGTGTCAAAT.23111.00110000000000000000000000000000121500000002000000000000000000000000000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTAA......................................................................................................................................................23111.00110000020001000000000000001000020212000000000000000000000000000000000000000000000
...............................................................................................G-CCCTTTTCGACTGCTATGT....................................................................................................................................................................................................20111.00110000000000000000000030000000140002000001000000000000000000000000000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTCA.......................................................................................................................................................22111.00110000000101000000000010000000120103000001000000000000000000000000000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTAC......................................................................................................................................................................................................21111.00112000000000000000000020000000211201000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CCGTTCCTGAAGTGTCAAAT.20111.00110000000000000000000020000000321200000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCT....19110.00100000020105000000000000000000000000000002000000000000000000000000000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATGTA...................................................................................................................................................................................................24110.00100010000000000000000000000000410200000000000000000000000000000000002000000000000
....................................................................................................................................................................................................................................................................................................CGTTCCTGAAGTGTCAAA..18110.00100000100103000000000000000000020101000001000000000000000000000000000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTTTT......................................................................................................................................................23110.00100000000501000000000000000000220000000000000000000000000000000000000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATGTTT..................................................................................................................................................................................................25110.00100000000000000000000000000000640000000000000000000000000000000000000000000000000
............................................................................................AAGG-CCCTTTTCGACTGCTATCCC...................................................................................................................................................................................................24110.00100000000000000000000000000000220400000000000000000000000000000000000000002000000
............................................................................................................................................ACAGTCTGAAAGGGCCTTTTCT......................................................................................................................................................22110.00100000010000000000000000000000320301000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CCGTTCCTGAAGTGTCAAATA21110.00100000020001000000000010000000101300000000000000000000000000000100000000000000000
...........................................................................................................................................AACAGTCTGAAAGGGCCTTTCCT......................................................................................................................................................2319.0090000010000000000000010000000100501000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGAAGTGTCAAG..2119.0090000020001000000000020000000210001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GCCGTTCCTGAAGTGTCAAAT.2119.0090000010000000000000020000000310200000000000000000000000000000000000000000000000
droMoj3
AGTCACTCTGGCAGCAATTAAACTCACCTGC---AGCTTTT---------------------------------------------------------------GCAGTG-----------CCTT----------------------------------------------------------------GT------------------------------------------------------------------------------------CCAGTCCCGTTATGTGCAGCTCCTGGGATTTCAAATCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
CATT--------------------------------------------------------------------------------TGAGATGAAAGGGCCTTTTTTAGCTGCTATGTGAATTTTTCGACTAATC----ATAACAGTTAAGAGGGC-CTATCCTCTCAAATGAC--------------GC---AC--GGGCAACA--------------GCATTCGTGGCG-----------GGGAATCTGA-----GTGAGCCCG-----AG--GATGCATCTGGTAACTAGCCGTTCCTGTGTAGCCAAATASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...........................................................................................AAAGGGCCTTTTTTAGCTGCTAT......................................................................................................................................................................................................2313.00303
..........................................................................................................................................TAACAGTTAAGAGGGC-CTAT.........................................................................................................................................................2013.00303
..........................................................................................................................................TAACAGTTAAGAGGGC-CTATC........................................................................................................................................................2112.00202
..........................................................................................................................................TAACAGTTAAGAGGGC-CTATCC.......................................................................................................................................................2211.00101
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGTGTAGCCAAATA2311.00101
.................................................................................................................................................................................................................................................................................................AGCCGTTCCTGTGTAGCCAAAT.2211.00101
...........................................................................................AAAGGGCCTTTTTTAGCTGCTATG.....................................................................................................................................................................................................2411.00101

Generated: 10/20/2015 at 07:48 PM