dan_2296

Name	Class	Family	Strand
DMCR1A	LINE	CR1	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AACAGAGAGGGAATGGAAATGCACAAATACGCTTGCTGTACTTAATTTAGGTATGTTAAAGGGTTTGGCCCCACTCAAAACACTAAACATTTTTAATTATTGTTTATTCTGTCAAATTTAAGTTGCTAAATTTTACTAAGATTACACGAAAAACATCTCTAAATTGTCAGCAATTCCAAAGCTTTTTGAAAAACTTATCACTCCACATTTGCAACACCTATGTAGTTCAATAATAACTCCGTGCCAGCATG ************************************************.....(((((((((((((...........(((.((((((...........))))))...)))........(((((((....((((...((((............)))).)))).....))))))))).)))))))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V039 embryo
........GGGAATGGAAATGCACAA.................................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0
..CAGAGAGGGAATGGAAATGCACAAATAC.............................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0
...................................................................................................................................................................................................................................CAATAATAACTCCGTGCCAGC...	21	0	20	0.35	7	0	7	0
.......................................................................................................................................CTAAAATTACACGAAAAACC................................................................................................	20	2	5	0.20	1	1	0	0
.................................................................................................................AAATTTAAGTTGCTAAAAT.......................................................................................................................	19	1	5	0.20	1	1	0	0
..........................................................................................................................................................................................TGAAAAACTTATCACTCCACA............................................	21	0	20	0.15	3	0	3	0
..................................................................................................................................................................................................TTATCACTCCACATTTGCAACACCTA...............................	26	0	20	0.15	3	3	0	0
...............................................................................................ATTATAGTTTATCCTGTCA.........................................................................................................................................	19	2	8	0.13	1	0	0	1
..........................................................................................................................................................................................TGAAAAACTTATCACTCCACATTT.........................................	24	0	20	0.10	2	2	0	0
...............................................................................................................................................................................................AACTTATCACTCCACATTTGCA......................................	22	0	20	0.10	2	0	2	0
.............................................................................................................................................................TCTAAATTGTCAGCAATTCCAAAGCT....................................................................	26	0	20	0.05	1	0	1	0
..................................................................................................................................................................................................................................TCAATAATAACTCCGTGCCAGCATG	25	0	20	0.05	1	0	1	0
............................................................................................................................................................CTCTAAATTGTCAGCAATTCCAAA.......................................................................	24	0	20	0.05	1	1	0	0
..............................................................................................................................................................................................................................TAGTTCAATAATAACTCCGTGCCAGCAT.	28	0	20	0.05	1	1	0	0
................................................................................................................................................................................................................................GTTCAATAATAACTCCGTGCCAGC...	24	0	20	0.05	1	1	0	0
..............................................................................................................................................................................................................ATTTGCAACACCTATGTAGTTC.......................	22	0	20	0.05	1	1	0	0
..................................................................................................................................................................................................................................TCAATAATAACTCCGTGCC......	19	0	20	0.05	1	1	0	0
...................................................................................................................................................................TTGTCAGCAATTCCAAAGCTTTT.................................................................	23	0	20	0.05	1	0	1	0
..................................................GTGCGTTGAAGGGTTTGGC......................................................................................................................................................................................	19	3	20	0.05	1	0	0	1

TTGTCTCTCCCTTACCTTTACGTGTTTATGCGAACGACATGAATTAAATCCATACAATTTCCCAAACCGGGGTGAGTTTTGTGATTTGTAAAAATTAATAACAAATAAGACAGTTTAAATTCAACGATTTAAAATGATTCTAATGTGCTTTTTGTAGAGATTTAACAGTCGTTAAGGTTTCGAAAAACTTTTTGAATAGTGAGGTGTAAACGTTGTGGATACATCAAGTTATTATTGAGGCACGGTCGTAC ************************************************.....(((((((((((((...........(((.((((((...........))))))...)))........(((((((....((((...((((............)))).)))).....))))))))).)))))))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	V039 embryo	V055 head	M058 embryo
.................................................................................................................................................TGCTTTTTGTAGAGATTTAACAGTCGT...............................................................................	27	0	1	1.00	1	1	0	0	0
...............................................................................................................................................TGTGCTTTTGGAAGAGAT..........................................................................................	18	2	12	0.08	1	0	0	1	0
....................................................................................................ACAAATAAGACAGAATAAA....................................................................................................................................	19	2	20	0.05	1	0	1	0	0
....................................................................................................................................................................................CGAAAAACTTTTTGAATAGTGAGGTGTA...........................................	28	0	20	0.05	1	0	1	0	0
..............................................................................................................................................................................................................TAAACGTTGTGGATACATCAAGTTAT...................	26	0	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13335:3173974-3174224 +	dan_2296	AACAGAGAGGGAATGGAAATGCACAAATACGCTTGCTGTACTTAATTTAGGTATGTTAAAGGGTTTGGCCCCACTCAAAACACTAAA---------------CATTTTTAAT----------------------------------------------TATTGTTTATTC--TGTCAAAT------------------------------------------------TTA-----AG---TTGCTAAATTTTACTAAG----A-TTACACGAAAAACATCTCTAAATT-GTCAGCAATT-CCAAAGCTTTTTGAAAAACTT-----------ATCACTCC-ACATTTGCAACACCTATGTA---------------GTTCAATAATAACTCCGTGCCAGCATG
droBip1	scf7180000393849:7206-7401 -		AAAAT----------------ATTAA------------AAAATATTAC-----------------------------------TG-------------------------------------------------------------------------------------------------------TAGTAGTGTT---------GATTTTTCAAGATACCTACTAGCTCAGTCGAATTTTACCGTGCATAACGCGG-AATGTTCTT---AGAGGCATCTCTAAGTT-GTCGGAAATT-CCAAAGTTATTTGAAAAATTA-----------TTTACCCC-TCATTTGCAACACCTTTGCT---------------CTTCGATTATCACTCCTTGTCAGAATG
droKik1	scf7180000302212:13221-13452 -		GCTTG----------------ATCTT------------TGCTTTGTTTAGTTA-------GGGTGGCGCCCCAC---------TTAGAAACC----------------------------------TCCCACTTTCCCCTTATTTGGAAGGAATTATTCGTTATT-CCTC-TTCACAAAAAAGGTA----------------------------------------------------------TCAAATTGGAGGCCA-ACAA-TTAC---AGAGGAATCTCTAAGTT-GTCGGCCATC-CCAAAACTGTTCGAAAATGTC-----------ATTACTCC-TCATCTGCAGCAGCTGTGTA---------------GGTCAATTATTTCTCCATGTCAACATG
droFic1	scf7180000454057:4217-4357 +		TTAAA----------------TT----------------------------------------------------------G-----------------------------------------------------------------------------------------------------TTGCAAAGTCTTTGAT------------------------------------------------------AATTAT-GCAA-TTAT---AGAGGTATTTCTAAATT-GTCAGCAATT-CCAAAGCTTTTCGAACGTGCA-----------GTAACTCC-CCACTTGCAGCACCTTTGTA---------------GATCAATCATATCTCCATGCCAACACG
droEle1	scf7180000489338:9918-10087 -		ATTTA----------------AA--------------------------------------------------------ATATTA-------------------------------------------------------------------------------------------------------TAATATTGAAAATTTATTTATATATTC-A--------AAA----------------TTGTAATTGATGATC-AAAA-TTAT---AGAGGTCTTTCTAAATT-GTCTGCAATA-CCTTAAGCATTTGAGCGCATT-----------ATTACTTC-TCATTTGCAACATTTGTGTT---------------CCTGACTAACATAACCTTATCAACATG
droRho1	scf7180000779668:15370-15560 -		AGAAT----------------CT-------------------------------------------------------------------------------------------------------TCCCAAATTCCAAATATTTAAAAATAATCATTTGTTATT-CCTT-CTTACAAAATAGGTA----------------------------------------------------------ACAAGTTAGAGGCCA-GTTA-CTAC---AGAGCTATATCTAAGTT-GTCAGCTATT-CACAAGCTTTTTAAAAAAATC-----------ATTACTCA-TCATTTACAACACCTTTGTG---------------GATCAATTATTTATCCGTGTCAATACG
droBia1	scf7180000301616:2318-2523 -		TGTGC----------------TT--------------------AAGTTTTGTGTGTCAA-----------CCAT---------TTGTAAACCGATTCTTAAACTTTTTAATTTGTCTATTTCACCATC------------------------------------------------------------------------------------------------------------AGTTTTTGCGAAGGCAGATGCCC-AAAG-TTAT---AGAGGTATTTCTAAATT-GTCGGCAATT-CCTAAAGCATTTGAACGTATT-----------ATCACTTC-TCATTTGCAACATTTATATT---------------CCTCGCTTATATCACCGTGTCAGCATG
droTak1	scf7180000414398:15272-15437 +		TAAAC----------------TT----------------------------------------------------------------------------------TTTCATTTGTCTATTTCATCATC-------------------------------------------------------------------------------AGTTTTTCCA---------------------------GAATTCCAGATGTCC-AGAA-TTAT---AGAGGTATTTCTAAATT-ATCGGCAATT-CCTAAAGCATTTGAACGTATT-----------ATCACTTC-TCATTTGAAACATTTATGTT---------------CCTCGCTAATATCACCCTGTCAGCATG
droEug1	scf7180000409726:7268-7473 -		AAAGT----------------TC--------------------AGGCTTCAG----------------------AAAAAATACTTAAAAAC-------------------------------------------------------------------------------------------------------TAGAACTCCGTTTAGTTACTCTCAATACTTAATTGCTCGGTCAAATTTTACCGTGCTTAACGCTC-AGTG-TTAT---AAAAATTATT-TAGCTC------------------------------GTTGTAGGACCCAATTTACACA-GGATCCGAAACAGTTTTATAATTTCGTTAAGACTAAGCTAATAATATCTCCATATCAACATG
dm3	chr2L:19507169-19507297 -		TCAAA----------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTCGGAAATG--GATT-TTAC---AGAGGAATCTCTAAATT-GTCGGCTATT-CCAAAGGTTTTTGAAAATGTT-----------ATCACTAC-TCATTTGCAGCGCCTTTGTA---------------GGTCAATTATATCACCATGTCAGCA--
droSim2	node_46261:427-541 -		TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-GCAA-TTAC---AGCAGAATCTCTAAATT-GTCGGCTATC-CCAAAACCTTTTGAAAATGTT-----------ATC-CTCC-TCATTTGCAGCACCTTTGTA---------------GATCAATCATATTACCGTGTCAGCACG
droSec2	scaffold_1317:3392-3545 -		TGA----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-CCTCTTTCACAAAAAAGGTA----------------------------------------------------------GCAAACTGTATGCCAAGCAA-TTAC---AGAGGAATCTCTAAACTGGTCAGGTAATCCCAAAACTTTTCGA-AATGTT-----------ATCACTTCTTCATTTGCAGCACCTTTGGA---------------GATCAATTATATCACCGGGTCAACACG
droYak3	v2_chrUn_6631:51954-52061 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTAC---AGAGGAACCTCCAAATT-GTCTGCTATG-CCTAAGCTTTTTGAAAACGTT-----------ATCACTCC-TCATTTGCAGCACCTTTGTA---------------GGTCAATTATATCACCATGTCAGCATG
droEre2	scaffold_4784:25349455-25349586 -		AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTA----------------------------------------------------------ATAAATTGTATGCAA-GCAA-TTAC---AAAGGAATCTCTCAATT-GTCTGCTATC-CCTATGCTTTATGAAAATGGT-----------ATCACTTC-TTATTTATGGCACCTTTATA---------------GGTCAATTATATCACCTTGTCAGCACG
dp5	Unknown_group_34:37862-38045 -		TCTGG----------------CT--------------------------------------------------------------------------------------------------------------TCCCTCAAATCTGGAAGGAGTCGTTAATAATT-CCTC-TCCATTAAAAAGGTA----------------------------------------------------------GCAAGTCTGACGCAA-AAAA-TTAT---AGAGGTATAGCAAAGTT-ATCCTCTATA-CCCAAAATGTTTGAGAAGGTT-----------TTAACTAC-GCACTTGCAACATTTCTGCA---------------AGTCACTTATACCTCCAACTCAGCATG
droPer2	scaffold_190:3236-3415 +		GTTTC----------------------------------------------------------------------------------------------------------------------------------GCCCCAATCTGGAAAGAAAGGTTTATAATT-CCTC-TCCATAAAAAAGGTG----------------------------------------------------------CTGAGTCTGAAAGGG-AAAA-TTAT---AAAGGTATAGGAAAGTT-ATCCGCTAAT-CCCAAATTGTTTGAGAAGGTT-----------TTAACTCC-GCAGTTGCAACATCTCTGCA---------------AGTCACTTATATCTCCAATTCAGCATG
droWil2	scf2_1100000004906:15087-15329 -		AGATG----------------AACATTTCCTCTTGGAATACTTAACT---------------------------------------------------TAAGCTTTTTGAGTTGTCCGTTACACTGTCCGAGTTTCCAACTATATGGAAGGATTCGTTCATTTTA-CCTC-TTCACAAATGTGGCA----------------------------------------------------------ATAAATCCGACGTCA-CTAA-TTAC---AGAGGAATTTCTAAATT-GTCAGCGATA-CCTAAACTGTTTGAGAAAATT-----------ATGACGTC-TCAAATACAGCATTTATGTA---------------AATCTATTTTTTCGCCATACCAGCATG
droVir3	scaffold_12728:387269-387428 -		AAAGA----------------AT-----------------------------------------------------------------------------------------------------------------------------------TTTATATCATT-CCTT-TTATCAAGAAAGGTG----------------------------------------------------------GGAAGTCTGATATAA-AAAA-TTAC---AGGGGCATTGCAAAACT-GTCCGCTATT-TCTAAATTTTTTAAAA---TA-----------ATCACTTC-GAATTTGCAGCATTTCTGCA---------------AATCAGTTGTTTCCCCTGTTCAACATG
droMoj3	scaffold_6541:1844973-1845140 +		TCAAA----------------AC----------------------------------------------------------ACATAA-----------------------------------------------------------------------------------------------------AACTCTTCAATTTTTCATTATGGAAGGT------------G---------------GAAGATCTGATATTT-CCAA-TTAT---AGAGGAATTGCGAAATT-ATCTGCTATT-CCGAAGTTATTTGAAAAAATT-----------ATAACATC-GGTCTTGCAACATTTTTGGA---------------AATTGATTATTCAACCATCTCAATATG
droGri2	scaffold_2030:116-273 -		ATTTA----------------TT------------------------------------------------------------------------------------------------------------------------------------ATTATTA-TTATTCC-TCCATAA----ATAA----------------------------------------------------------ACAAATCTAATTTTC-AGAA-TTAT---AGCAGTATTTCTAAGTT-GTCCGCCATT-CGTAAGATTTTTAAAAAGTTG-----------TTAGCTTC-TCAATTATAACATGTTTGCA---------------GATTCTCGACCTCACCCTGCCAGTGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

AACAGAGAGGGAATGGAAATGCACAAATACGCTTGCTGTACTTAATTTAGGTATGTTAAAGGGTTTGGCCCCACTCAAAACACTAAA---------------CATTTTTAAT----------------------------------------------TATTGTTTATTC--TGTCAAAT------------------------------------------------TTA-----AG---TTGCTAAATTTTACTAAG----A-TTACACGAAAAACATCTCTAAATT-GTCAGCAATT-CCAAAGCTTTTTGAAAAACTT-----------ATCACTCC-ACATTTGCAACACCTATGTA---------------GTTCAATAATAACTCCGTGCCAGCATG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........GGGAATGGAAATGCACAA..........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..CAGAGAGGGAATGGAAATGCACAAATAC......................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CAATAATAACTCCGTGCCAGC...	21	20	0.35	7	7	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TGAAAAACTT-----------ATCACTCC-ACA...........................................................	21	20	0.15	3	3	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TT-----------ATCACTCC-ACATTTGCAACACCTA..............................................	26	20	0.15	3	0	3	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TGAAAAACTT-----------ATCACTCC-ACATTT........................................................	24	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................AACTT-----------ATCACTCC-ACATTTGCA.....................................................	22	20	0.10	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TCTAAATT-GTCAGCAATT-CCAAAGCT...............................................................................................	26	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TCAATAATAACTCCGTGCCAGCATG	25	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CTCTAAATT-GTCAGCAATT-CCAAA..................................................................................................	24	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TA---------------GTTCAATAATAACTCCGTGCCAGCAT.	28	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GTTCAATAATAACTCCGTGCCAGC...	24	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ATTTGCAACACCTATGTA---------------GTTC.......................	22	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TCAATAATAACTCCGTGCC......	19	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................TT-GTCAGCAATT-CCAAAGCTTTT............................................................................................	23	20	0.05	1	1	0	0	0	0	0

droBip1

AAAAT----------------ATTAA------------AAAATATTAC-----------------------------------TG-------------------------------------------------------------------------------------------------------TAGTAGTGTT---------GATTTTTCAAGATACCTACTAGCTCAGTCGAATTTTACCGTGCATAACGCGG-AATGTTCTT---AGAGGCATCTCTAAGTT-GTCGGAAATT-CCAAAGTTATTTGAAAAATTA-----------TTTACCCC-TCATTTGCAACACCTTTGCT---------------CTTCGATTATCACTCCTTGTCAGAATG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCTTG----------------ATCTT------------TGCTTTGTTTAGTTA-------GGGTGGCGCCCCAC---------TTAGAAACC----------------------------------TCCCACTTTCCCCTTATTTGGAAGGAATTATTCGTTATT-CCTC-TTCACAAAAAAGGTA----------------------------------------------------------TCAAATTGGAGGCCA-ACAA-TTAC---AGAGGAATCTCTAAGTT-GTCGGCCATC-CCAAAACTGTTCGAAAATGTC-----------ATTACTCC-TCATCTGCAGCAGCTGTGTA---------------GGTCAATTATTTCTCCATGTCAACATG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTAAA----------------TT----------------------------------------------------------G-----------------------------------------------------------------------------------------------------TTGCAAAGTCTTTGAT------------------------------------------------------AATTAT-GCAA-TTAT---AGAGGTATTTCTAAATT-GTCAGCAATT-CCAAAGCTTTTCGAACGTGCA-----------GTAACTCC-CCACTTGCAGCACCTTTGTA---------------GATCAATCATATCTCCATGCCAACACG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATTTA----------------AA--------------------------------------------------------ATATTA-------------------------------------------------------------------------------------------------------TAATATTGAAAATTTATTTATATATTC-A--------AAA----------------TTGTAATTGATGATC-AAAA-TTAT---AGAGGTCTTTCTAAATT-GTCTGCAATA-CCTTAAGCATTTGAGCGCATT-----------ATTACTTC-TCATTTGCAACATTTGTGTT---------------CCTGACTAACATAACCTTATCAACATG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGAAT----------------CT-------------------------------------------------------------------------------------------------------TCCCAAATTCCAAATATTTAAAAATAATCATTTGTTATT-CCTT-CTTACAAAATAGGTA----------------------------------------------------------ACAAGTTAGAGGCCA-GTTA-CTAC---AGAGCTATATCTAAGTT-GTCAGCTATT-CACAAGCTTTTTAAAAAAATC-----------ATTACTCA-TCATTTACAACACCTTTGTG---------------GATCAATTATTTATCCGTGTCAATACG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGTGC----------------TT--------------------AAGTTTTGTGTGTCAA-----------CCAT---------TTGTAAACCGATTCTTAAACTTTTTAATTTGTCTATTTCACCATC------------------------------------------------------------------------------------------------------------AGTTTTTGCGAAGGCAGATGCCC-AAAG-TTAT---AGAGGTATTTCTAAATT-GTCGGCAATT-CCTAAAGCATTTGAACGTATT-----------ATCACTTC-TCATTTGCAACATTTATATT---------------CCTCGCTTATATCACCGTGTCAGCATG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAAAC----------------TT----------------------------------------------------------------------------------TTTCATTTGTCTATTTCATCATC-------------------------------------------------------------------------------AGTTTTTCCA---------------------------GAATTCCAGATGTCC-AGAA-TTAT---AGAGGTATTTCTAAATT-ATCGGCAATT-CCTAAAGCATTTGAACGTATT-----------ATCACTTC-TCATTTGAAACATTTATGTT---------------CCTCGCTAATATCACCCTGTCAGCATG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAAGT----------------TC--------------------AGGCTTCAG----------------------AAAAAATACTTAAAAAC-------------------------------------------------------------------------------------------------------TAGAACTCCGTTTAGTTACTCTCAATACTTAATTGCTCGGTCAAATTTTACCGTGCTTAACGCTC-AGTG-TTAT---AAAAATTATT-TAGCTC------------------------------GTTGTAGGACCCAATTTACACA-GGATCCGAAACAGTTTTATAATTTCGTTAAGACTAAGCTAATAATATCTCCATATCAACATG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCAAA----------------AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTCGGAAATG--GATT-TTAC---AGAGGAATCTCTAAATT-GTCGGCTATT-CCAAAGGTTTTTGAAAATGTT-----------ATCACTAC-TCATTTGCAGCGCCTTTGTA---------------GGTCAATTATATCACCATGTCAGCA--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................TTAC---AGAGGAATCTCTAAATT-GTCGGC............................................................................................................	27	20	110.40	2208	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	87	0	0	0	35	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	458	0	0	0	0	0	0	0	0	59	0	0	0	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1006	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	193	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	247	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TAC---AGAGGAATCTCTAAATT-GTCGGC............................................................................................................	26	20	33.65	673	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	19	0	0	0	0	0	0	18	27	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	32	0	0	0	0	0	0	7	24	0	0	0	0	0	21	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	32	34	0	5	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	206	0	0	0	0	0	0	0	0	0	0	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	63	0	0	0	0	0	5
.........................................................................................................................................................................................................................................................................TTAC---AGAGGAATCTCTAAATT-GTCGG.............................................................................................................	26	20	9.10	182	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	9	0	0	0	118	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TCATTTGCAGCGCCTTTGTA---------------GGTCAAT....................	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTAC---AGAGGAATCTCTAAATT-GTC...............................................................................................................	24	20	5.65	113	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................AATGTT-----------ATCACTAC-TCATTTGCAGCGC.................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTAC---AGAGGAATCTCTAAATT-GTCG..............................................................................................................	25	20	2.85	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	2	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................AATGTT-----------ATCACTAC-TCATTTGCAGC...................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................................................AATCTCTAAATT-GTCGGCTA..........................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AC---AGAGGAATCTCTAAATT-GTC...............................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTAC---AGAGGAATCTCTAAATT-GTCGC.............................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GAATCTCTAAATT-GTCGGCTAT.........................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GGAATCTCTAAATT-GTCGGCTAC.........................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TAC---AGAGGAATCTCTAAA.....................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-GCAA-TTAC---AGCAGAATCTCTAAATT-GTCGGCTATC-CCAAAACCTTTTGAAAATGTT-----------ATC-CTCC-TCATTTGCAGCACCTTTGTA---------------GATCAATCATATTACCGTGTCAGCACG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................TAC---AGCAGAATCTCTAAATT-GTCGGC............................................................................................................	26	1	24.00	24	0	0	6	0	0	0	3	11	1	3	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTAC---AGCAGAATCTCTAAATT-GTC...............................................................................................................	24	1	9.00	9	0	0	0	0	0	0	4	3	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGCAGCACCTTTGTA---------------GATCAATCATA................	26	20	8.60	172	0	0	0	1	0	0	0	0	91	0	0	0	80	0	0	0	0
.........................................................................................................................................................................................................................................................................TTAC---AGCAGAATCTCTAAATT-GTCGGC............................................................................................................	27	1	6.00	6	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0
.TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-GCAA-TTAC---AGCAGAATCTCTAAA.....................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGCAGCACCTTTGTA---------------GATCA......................	20	20	4.95	99	0	0	0	0	98	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TCTAAATT-GTCGGCTATC-CCA....................................................................................................	21	20	4.75	95	0	0	0	0	92	0	0	0	0	0	0	0	0	3	0	0	0
.....................................................................................................................................................................................................................................................................................AATCTCTAAATT-GTCGGCTATC-.......................................................................................................	22	20	4.75	95	0	0	0	0	0	94	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GAATCTCTAAATT-GTCGGCTATC-CCA....................................................................................................	26	20	4.50	90	0	0	0	0	0	90	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................ATCAATCATATTACCGTGTCAGCA..	24	5	4.20	21	0	0	0	0	0	0	8	0	12	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................A---------------GATCAATCATATTACCGTGTCAGCA..	26	5	4.00	20	0	0	0	0	0	0	10	4	6	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TAC---AGCAGAATCTCTAAATT-GTCGG.............................................................................................................	25	1	4.00	4	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TA---------------GATCAATCATATTACCGTGTCAGCA..	27	5	3.60	18	0	0	0	0	0	0	7	2	6	0	3	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TAC---AGCAGAATCTCTAAATT-GTC...............................................................................................................	23	1	3.00	3	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AA-TTAC---AGCAGAATCTCTAAATT-GTC...............................................................................................................	26	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TA---------------GATCAATCATATTACCGTGTCAGC...	26	5	2.00	10	0	0	0	3	0	0	0	1	0	0	6	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................A---------------GATCAATCATATTACCGTGTCAGC...	25	5	1.80	9	0	0	0	0	0	0	2	4	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TTGTA---------------GATCAATCATATTACCGTGTC......	26	5	1.60	8	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TTTGTA---------------GATCAATCATATTACCGTGTC......	27	5	1.40	7	0	0	0	0	0	0	3	0	1	0	0	0	2	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................A---------------GATCAATCATATTACCGTGTCAGT...	25	5	1.40	7	0	0	0	0	0	0	3	1	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TCTCTAAATT-GTCGGCTATC-CCAAAAC................................................................................................	27	20	1.10	22	0	0	0	0	0	0	0	7	0	2	2	0	11	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGCAGCACCTTTGTA---------------GATCAATCA..................	24	20	1.10	22	0	0	0	0	0	0	6	12	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TTGTA---------------GATCAATCATATTACCGTGT.......	25	5	1.00	5	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................TGTT-----------ATC-CTCC-TCATTTGCAGCA..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ATGTT-----------ATC-CTCC-TCATTT........................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GCAGAATCTCTAAATT-GTCGG.............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAGAATCTCTAAATT-GTCGGC............................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTAC---AGCAGAATCTCTAAATT-GTCG..............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TGTA---------------GATCAATCATATTACCGTGTC......	25	5	0.80	4	0	0	0	0	0	0	1	0	1	0	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................TCTAAATT-GTCGGCTATC-CCAAAAC................................................................................................	25	20	0.70	14	0	0	1	0	0	0	1	0	6	5	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................TATC-CCAAAACCTTTTGAAAAA.....................................................................................	22	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
......................................................................................................................................................................................................................................................................................ATCTCTAAATT-GTCGGCTATC-.......................................................................................................	21	20	0.60	12	1	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TTGTA---------------GATCAATCATATTACCGTG........	24	5	0.60	3	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0
.......................................................................................................................................................................................................................................................................................TCTCTAAATT-GTCGGCTATC-CCAAAA.................................................................................................	26	20	0.55	11	0	0	0	0	0	0	2	0	2	0	0	0	7	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TC-CTCC-TCATTTGCAGC...................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TC-CTCC-TCATTTGCAGCACCTTT.............................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CTTTGTA---------------GATCAATCATATTACCGT.........	25	5	0.40	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................ATCAATCATATTACCGTGTCAGC...	23	5	0.40	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................A---------------GATCAATCATATTACCGTGTCAGTT..	26	5	0.40	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TCTCTAAATT-GTCGGCTATC-CCAAA..................................................................................................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................A---------------GATCAATCATATTACCGTGTCAG....	24	5	0.40	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TCTAAATT-GTCGGCTATC-CCAAAACC...............................................................................................	26	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TAAATT-GTCGGCTATC-CCAAAACC...............................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ATCTCTAAATT-GTCGGCTATC-CCAAAAC................................................................................................	28	20	0.30	6	0	0	0	0	0	0	0	0	3	1	0	0	0	2	0	0	0
........................................................................................................................................................................................................................................................................................CTCTAAATT-GTCGGCTATC-CC.....................................................................................................	21	20	0.25	5	0	0	0	0	0	0	0	0	1	0	0	0	4	0	0	0	0
......................................................................................................................................................................................................................................................................................ATCTCTAAATT-GTCGGCTATC-CCAAAA.................................................................................................	27	20	0.25	5	0	0	0	0	0	0	1	0	0	0	0	0	3	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TCATATTACCGTGTCAGC...	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TTTGTA---------------GATCAATCATATTACCGT.........	24	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TTGTA---------------GATCAATCATATTACCGT.........	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TTGTA---------------GATCAATCATATTACCG..........	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TGTA---------------GATCAATCATATTACCGTGTCA.....	26	5	0.20	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TA---------------GATCAATCATATTACCGTGTCAG....	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGCACCTTTGTA---------------GATCAATCATATTACCGT.........	30	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GATCAATCATATTACCGTGTCAGCA..	25	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TCTAAATT-GTCGGCTATC-CCAAAA.................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TGTA---------------GATCAATCATATTACCGTG........	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TA---------------GATCAATCATATTACCGTGTC......	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TA---------------GATCAATCATATTACCGTGTCA.....	24	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................A---------------GATCAATCATATTACCGTGT.......	21	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TTTGTA---------------GATCAATCATATTACCGTG........	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TA---------------GATCAATCATATTACCGTGTCAGCACA	29	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TTTGCAGCACCTTTGTA---------------GATCAATCA..................	26	20	0.20	4	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TTTGTA---------------GATCAATCATATTACCGTGC.......	26	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CTCTAAATT-GTCGGCTATC-C......................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................TAAATT-GTCGGCTATC-CCAAA..................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TTTGCAGCACCTTTGTA---------------GATCAATCATA................	28	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.......................................................................................................................................................................................................................................................................................TCTCTAAATT-GTCGGCTATC-CCA....................................................................................................	23	20	0.15	3	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................TAAATT-GTCGGCTATC-CCAAAAC................................................................................................	23	20	0.15	3	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CTCC-TCATTTGCAGCACCTTTGTA---------------GA.........................	26	20	0.15	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CACCTTTGTA---------------GATCAATCATATTACCA..........	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TCC-TCATTTGCAGCACCTTTGTA---------------GA.........................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CTCC-TCATTTGCAGCACC................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TCTAAATT-GTCGGCTATC-CC.....................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................ATCTCTAAATT-GTCGGCTATC-CCA....................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................CC-TCATTTGCAGCACCTT..............................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGCAGCACCTTTGTA---------------GATCAATCATAT...............	27	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................T-GTCGGCTATC-CCAAAA.................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTGCAGCACCTTTGTA---------------GATCAATCATA................	27	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TCC-TCATTTGCAGCACCTTTG............................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TCATTTGCAGCACCTTTGTA---------------GATCAA.....................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................C-TCATTTGCAGCACCTTTGTA---------------...........................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAGCACCTTTGTA---------------GATCAATCAT.................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AAATT-GTCGGCTATC-CCAAG..................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................CTAAATT-GTCGGCTATC-CCAAA..................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TCC-TCATTTGCAGCACCTTTGTA---------------GT.........................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CTCTAAATT-GTCGGCTATC-CCAAAAC................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGCACCTTTGTA---------------GATCAATCA..................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TGTA---------------GATCAATCATA................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AATCTCTAAATT-GTCGGCTATC-CCAAAA.................................................................................................	28	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GAATCTCTAAATT-GTCGGCTATC-CCAAAA.................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TTTGCAGCACCTTTGTA---------------GATCAATC...................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGCAGCACCTTTGTA---------------GATCAATCATT................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGCACCTTTGTA---------------GATCAATCATA................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TCTCTAAATT-GTCGGCTATC-.......................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TCC-TCATTTGCAGCACCTTTGA...........................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AATCTCTAAATT-GTCGGCTAT.........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGCAGCACCTTTGTA---------------GATCAATCATG................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGCAGCACCTTTGTA---------------GATCAATC...................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CTCC-TCATTTGCAGCACCTA..............................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................AATT-GTCGGCTATC-CCAAAAC................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GCACCTTTGTA---------------GATCAATCAT.................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TCC-TCATTTGCAGCACCTTTGT...........................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGCAGCACCTTTGTA---------------GATCAATCAT.................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAGCACCTTTGTA---------------GATCAATCATA................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TAAATT-GTCGGCTATC-CCAAAA.................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................ATCTCTAAATT-GTCGGCTA..........................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GCAGCACCTTTGTA---------------GATCAATCATA................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TCTCTAAATT-GTCGGC............................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CTCTAAATT-GTCGGCTATC-.......................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TCC-TCATTTGCAGCACCTTTGTA---------------GATC.......................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................TAAATT-GTCGGCTATC-CCAA...................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TCC-TCATTTGCAGCACC................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TGA----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-CCTCTTTCACAAAAAAGGTA----------------------------------------------------------GCAAACTGTATGCCAAGCAA-TTAC---AGAGGAATCTCTAAACTGGTCAGGTAATCCCAAAACTTTTCGA-AATGTT-----------ATCACTTCTTCATTTGCAGCACCTTTGGA---------------GATCAATTATATCACCGGGTCAACACG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................TGTT-----------ATCACTTCTTCATTTGCAGCACC................................................	27	1	1.00	1	0	0	1	0

droYak3

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTAC---AGAGGAACCTCCAAATT-GTCTGCTATG-CCTAAGCTTTTTGAAAACGTT-----------ATCACTCC-TCATTTGCAGCACCTTTGTA---------------GGTCAATTATATCACCATGTCAGCATG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................................................................................................................GAAAACGTT-----------ATCACTCC-TCATTTGC......................................................	25	20	0.60	12	0	11	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................AACGTT-----------ATCACTCC-TCATTTGCA.....................................................	23	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GAAAACGTT-----------ATCACTCC-TCATTTGCAGC...................................................	28	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................C-TCATTTGCAGCACCTTTGTA---------------GG.........................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................AAACGTT-----------ATCACTCC-TCATTTGCAG....................................................	25	20	0.10	2	0	1	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................AACGTT-----------ATCACTCC-TCATTTGCAGC...................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................C-TCATTTGCAGCACCTTTGTA---------------GGTCAATT...................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACGTT-----------ATCACTCC-TCATTTGC......................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................AACGTT-----------ATCACTCC-TCATTTGCAGCAC.................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TTGAAAACGTT-----------ATCACTCC-TCAT..........................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CGTT-----------ATCACTCC-TCATTTGCAGCACC................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TCC-TCATTTGCAGCACCTTTGTA---------------G..........................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................AACGTT-----------ATCACTCC-TCATTTGCAGCACC................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................T-----------ATCACTCC-TCATTTGCAGCA..................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................CC-TCATTTGCAGCACCTTTGTA---------------GGTC.......................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTA----------------------------------------------------------ATAAATTGTATGCAA-GCAA-TTAC---AAAGGAATCTCTCAATT-GTCTGCTATC-CCTATGCTTTATGAAAATGGT-----------ATCACTTC-TTATTTATGGCACCTTTATA---------------GGTCAATTATATCACCTTGTCAGCACG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................................................TTTATGAAAATGGT-----------ATCACTTC-TTATT.........................................................	27	1	1.00	1	1	0	0	0	0	0	0

dp5

TCTGG----------------CT--------------------------------------------------------------------------------------------------------------TCCCTCAAATCTGGAAGGAGTCGTTAATAATT-CCTC-TCCATTAAAAAGGTA----------------------------------------------------------GCAAGTCTGACGCAA-AAAA-TTAT---AGAGGTATAGCAAAGTT-ATCCTCTATA-CCCAAAATGTTTGAGAAGGTT-----------TTAACTAC-GCACTTGCAACATTTCTGCA---------------AGTCACTTATACCTCCAACTCAGCATG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................TCCCTCAAATCTGGAAGGAGTCGTTA.....................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................TCCCTCAAATCTGGAAGGAGTCGT.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TCTGACGCAA-AAAA-TTAT---AGAGG...............................................................................................................................	23	20	0.70	14	0	3	0	0	0	0	0	4	7	0
.........................................................................................................................................................TCGTTAATAATT-CCTC-TCCAT....................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TCTGACGCAA-AAAA-TTAT---AGAGGT..............................................................................................................................	24	20	0.40	8	0	4	0	0	0	0	1	2	1	0
............................................................................................................................................................................................................................................................................................AAGTT-ATCCTCTATA-CCCAAAATGTT............................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................TTAAAAAGGTA----------------------------------------------------------GCAAGTCTGA......................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................TCTGACGCAA-AAAA-TTAT---AGAGGTA.............................................................................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AGGTA----------------------------------------------------------GCAAGTCTGACGCA..................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GTCTGACGCAA-AAAA-TTAT---AGAGGTA.............................................................................................................................	26	19	0.05	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................TTAT---AGAGGTATAGCAAAGTT-ATCC..............................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AAAA-TTAT---AGAGGTATAGCA........................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................CAAGTCTGACGCAA-AAAA-TTAT---AG..................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................CAAAATGTTTGAGAAGGTT-----------TT.....................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TCTGACGCAA-AAAA-TTAT---AGAGGTAA............................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................CCAAAATGTTTGAGAAGGTT-----------T......................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................CTGACGCAA-AAAA-TTAT---AGAGGT..............................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................ATGTTTGAGAAGGTT-----------TTAACT.................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TCTGACGCAA-AAAA-TTAT---AGAG................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

GTTTC----------------------------------------------------------------------------------------------------------------------------------GCCCCAATCTGGAAAGAAAGGTTTATAATT-CCTC-TCCATAAAAAAGGTG----------------------------------------------------------CTGAGTCTGAAAGGG-AAAA-TTAT---AAAGGTATAGGAAAGTT-ATCCGCTAAT-CCCAAATTGTTTGAGAAGGTT-----------TTAACTCC-GCAGTTGCAACATCTCTGCA---------------AGTCACTTATATCTCCAATTCAGCATG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................................................................................TTGTTTGAGAAGGTT-----------TTAACT.................................................................	21	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................CCCAAATTGTTTGAGAAGGTT-----------.......................................................................	21	20	0.05	1	0	1	0	0	0	0

droWil2

AGATG----------------AACATTTCCTCTTGGAATACTTAACT---------------------------------------------------TAAGCTTTTTGAGTTGTCCGTTACACTGTCCGAGTTTCCAACTATATGGAAGGATTCGTTCATTTTA-CCTC-TTCACAAATGTGGCA----------------------------------------------------------ATAAATCCGACGTCA-CTAA-TTAC---AGAGGAATTTCTAAATT-GTCAGCGATA-CCTAAACTGTTTGAGAAAATT-----------ATGACGTC-TCAAATACAGCATTTATGTA---------------AATCTATTTTTTCGCCATACCAGCATG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................TAAGCTTTTTGAGTTGTCCGTTACAC........................................................................................................................................................................................................................................................................................	26	20	1.45	29	0	0	0	29	0
.....................................................................................................................................................................................................................................................................TAA-TTAC---AGAGGAATTTCTAAATT-GT................................................................................................................	26	20	1.25	25	0	0	1	24	0
..........................................................................................................................................................................................................................................................................TAC---AGAGGAATTTCTAAATT-GTCAGCG...........................................................................................................	27	20	0.40	8	0	7	1	0	0
.......................................................................................................................TACACTGTCCGAGTTTCCAACTATA....................................................................................................................................................................................................................................................................	25	20	0.35	7	0	0	0	7	0
............................................................................................................................................................................TCACAAATGTGGCA----------------------------------------------------------ATAAATCCGACG....................................................................................................................................................	26	20	0.35	7	0	7	0	0	0
..................................................................................................................TCCGTTACACTGTCCGAGTTTCCAAC........................................................................................................................................................................................................................................................................	26	20	0.25	5	0	5	0	0	0
................................................................................................................................................................................................................................................................................................T-GTCAGCGATA-CCTAAACTGTTTGAGA.......................................................................................	27	20	0.25	5	0	5	0	0	0
..........................................................................................................................................................................................................................................................................................................TA-CCTAAACTGTTTGAGAAAATT-----------ATGACG.................................................................	29	20	0.15	3	0	3	0	0	0
..........................................................................................................................................................................................................................................................................................................TA-CCTAAACTGTTTGAGAAAATT-----------ATG....................................................................	26	20	0.15	3	0	1	0	2	0
...........................................................................................................................................................................................................................................................................................TAAATT-GTCAGCGATA-CCTAAACTGT.............................................................................................	26	20	0.15	3	0	2	0	1	0
..........................................................................................................TTGAGTTGTCCGTTACACTGTCCGA.................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
...........................................................................................................TGAGTTGTCCGTTACACTGTCCGAG................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................TA-CCTAAACTGTTTGAGAAAATT-----------ATGA...................................................................	27	20	0.10	2	0	0	0	2	0
..........................................................................................................TTGAGTTGTCCGTTACACTGTCCGAG................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0
.........................................................................................................................CACTGTCCGAGTTTCCAACTATATGGAA...............................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	2	0
..............................................................................................................................TCCGAGTTTCCAACTATATGGAAGGAT...........................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	2	0
....................................................................................................................CGTTACACTGTCCGAGTTTCCA..........................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.......................................................................................................................TACACTGTCCGAGTTTCCAACTA......................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................TAA-TTAC---AGAGGAATTTCTAAATT-..................................................................................................................	24	20	0.05	1	0	1	0	0	0
........................................................................................................................................................TTCGTTCATTTTA-CCTC-TTCACAAATG...............................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................TCGTTCATTTTA-CCTC-TTCACAAATGT..............................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................GTGGCA----------------------------------------------------------ATAAATCCGACGTCA-................................................................................................................................................	21	20	0.05	1	0	0	1	0	0
..................................................................................................................TCCGTTACACTGTCCGAGTTT.............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AAATACAGCATTTATGTA---------------AATCTAT....................	25	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................GATA-CCTAAACTGTTTGAGA.......................................................................................	20	20	0.05	1	0	0	0	1	0
.........................................................................................................TTTGAGTTGTCCGTTACACTGTCCG..................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................TTCACAAATGTGGCA----------------------------------------------------------ATAAATCCGA......................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
............................................................................................................................................TATATGGAAGGATTCGTTCATTTT................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................ATTCGTTCATTTTA-CCTC-TTC......................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................T-----------ATGACGTC-TCAAATACAGCATTTATG............................................	27	20	0.05	1	0	0	1	0	0
.........................................................................................................TTTGAGTTGTCCGTTACACTGTCCGAGT...............................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
...............................................................................................................TTGTCCGTTACACTGTCCGAG................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..................................................................................................................TCCGTTACACTGTCCGAGTTTCCAACTA......................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
.........................................................................................................TTTGAGTTGTCCGTTACACTGTCCGA.................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
........................................................................................................TTTTGAGTTGTCCGTTACACT.......................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................TAAATT-GTCAGCGATA-CCTAAAA................................................................................................	23	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................TAC---AGAGGAATTTCTAAATT-G.................................................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................TT-----------ATGACGTC-TCAAATACAGC...................................................	21	20	0.05	1	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................CTGTTTGAGAAAATT-----------ATGACGTC-TCA...........................................................	26	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................CGACGTCA-CTAA-TTAC---AGAGGAATT...........................................................................................................................	25	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................T-GTCAGCGATA-CCTAAACTGTTTGAGAA......................................................................................	28	20	0.05	1	0	1	0	0	0
.......................................................................................................................................CCAACTATATGGAAGGATTCGTTCATT..................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..................................................................................................TAAGCTTTTTGAGTTGTCCGTTAC..........................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0

droVir3

AAAGA----------------AT-----------------------------------------------------------------------------------------------------------------------------------TTTATATCATT-CCTT-TTATCAAGAAAGGTG----------------------------------------------------------GGAAGTCTGATATAA-AAAA-TTAC---AGGGGCATTGCAAAACT-GTCCGCTATT-TCTAAATTTTTTAAAA---TA-----------ATCACTTC-GAATTTGCAGCATTTCTGCA---------------AATCAGTTGTTTCCCCTGTTCAACATG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................................................................................................................................................................................TCACTTC-GAATTTGCAGCATTTCT.............................................	24	20	1.90	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TTAAAA---TA-----------ATCACTTC-GAATTTGC......................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AAGTCTGATATAA-AAAA-TTAC---AGGG................................................................................................................................	25	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AAGTCTGATATAA-AAAA-TTAC---AGGGG...............................................................................................................................	26	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TCACTTC-GAATTTGCAGCATTTCTGCA---------------AA.........................	29	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AAGTCTGATATAA-AAAA-TTAC---AGGGGCA.............................................................................................................................	28	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GTCTGATATAA-AAAA-TTAC---AGGG................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CTGATATAA-AAAA-TTAC---AGGGG...............................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TGATATAA-AAAA-TTAC---AGGGGCATTT..........................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CATTGCAAAACT-GTCCGCTATT-TCT....................................................................................................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CTGATATAA-AAAA-TTAC---AGGGGT..............................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TTTCTGCA---------------AATCAGTTGTT................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCAAGAAAGGTG----------------------------------------------------------GGAAGT..........................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CACTTC-GAATTTGCAGCATTTCTG............................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTAC---AGGGGCATTGCAAAACT-GT................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AC---AGGGGCATTGCAAAACT-GTC...............................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................A-TTAC---AGGGGCATTGCAA.......................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CATTTCTGCA---------------AATCAGTTGTT................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................GAAAGGTG----------------------------------------------------------GGAAGTCTGATATA..................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................CAGTTGTTTCCCCTGTTCAAC...	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

droMoj3

TCAAA----------------AC----------------------------------------------------------ACATAA-----------------------------------------------------------------------------------------------------AACTCTTCAATTTTTCATTATGGAAGGT------------G---------------GAAGATCTGATATTT-CCAA-TTAT---AGAGGAATTGCGAAATT-ATCTGCTATT-CCGAAGTTATTTGAAAAAATT-----------ATAACATC-GGTCTTGCAACATTTTTGGA---------------AATTGATTATTCAACCATCTCAATATG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................AATT-ATCTGCTATT-CCGAAGTTATT............................................................................................	25	20	0.05	1	1	0	0	0	0	0

droGri2

ATTTA----------------TT------------------------------------------------------------------------------------------------------------------------------------ATTATTA-TTATTCC-TCCATAA----ATAA----------------------------------------------------------ACAAATCTAATTTTC-AGAA-TTAT---AGCAGTATTTCTAAGTT-GTCCGCCATT-CGTAAGATTTTTAAAAAGTTG-----------TTAGCTTC-TCAATTATAACATGTTTGCA---------------GATTCTCGACCTCACCCTGCCAGTGTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_2296

scaffold_13335:3174024-3174174 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.0	-17.0	-17.0