ID:

dan_225

 Coordinate:

scaffold_13335:211458-211522 +

 Confidence:

candidate

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTTAAAATGCATGAGTGTATTTAAATTGAATATTATATAAAAATCTTAGTGAATAAAGTAGGGTACTTGATAGATCCGTTTATTTTATTGGATCTATCATTACCCTATTTTATTTTCCAAAGATATTTTCGTCCTCAGATATGTAAAATTGTAAATCCTTTTTAA

***************************************...(((((...(((((((((((((((..(((((((((((..........))))))))))).)))))))))))))))....)))))....************************************* 		Read size # Mismatch Hit Count Total Norm Total V105

male body		 V106

head

 V055

head

 M044

female body

 V039

embryo

 M058

embryo
......................................................AAAGTAGGGTACTTGATAGATCC........................................................................................ 23 0 1 99.00 99 67 20 10 2 0 0
......................................................AAAGTAGGGTACTTGATAGATC......................................................................................... 22 0 1 60.00 60 47 7 3 2 0 1
......................................................AAAGTAGGGTACTTGATAGAT.......................................................................................... 21 0 1 44.00 44 38 1 3 2 0 0
.......................................................AAGTAGGGTACTTGATAGATCCG....................................................................................... 23 0 1 21.00 21 17 1 2 1 0 0
.......................................................AAGTAGGGTACTTGATAGATCC........................................................................................ 22 0 1 14.00 14 9 2 2 1 0 0
......................................................AAAGTAGGGTACTTGATAGATCCT....................................................................................... 24 1 1 6.00 6 5 1 0 0 0 0
......................................................AAAGTAGGGTACTTGATAGATCT........................................................................................ 23 1 1 5.00 5 3 1 1 0 0 0
.......................................................AAGTAGGGTACTTGATAGATC......................................................................................... 21 0 1 5.00 5 4 0 1 0 0 0
......................................................AAAGTAGGGTACTTGATAGA........................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0
......................................................AAAGTAGGGTACTTGATAGATCCA....................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
...............................................................................................................ATTTTCCAAAGATGTTTTC................................... 19 1 3 3.33 10 0 1 0 0 8 1
.......................................................AAGTAGGGTACTTGATAGAT.......................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0
......................................................AAAGTAGGGTACTTGATAGATCCTT...................................................................................... 25 1 1 3.00 3 1 1 1 0 0 0
......................................................AAAGTAGGGTACTTGATAGATCCG....................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0
......................................................AAAGTAGGGTACTTGATAGATA......................................................................................... 22 1 1 2.00 2 1 0 1 0 0 0
......................................................AAAATAGGGTACTTGATAGATCC........................................................................................ 23 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................ATCTATCATTACCCTATTTTAT.................................................... 22 0 1 2.00 2 0 0 0 2 0 0
...............................................................................................................ATTTTCCAAAGATGTTTT.................................... 18 1 7 1.43 10 0 0 0 0 10 0
......................................................AAAGTAGGATACTTGATAGATC......................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...............................................................................................................ATTTTCCAAAGATATTTT.................................... 18 0 1 1.00 1 0 0 0 0 1 0
...............................................................................................................ATTTTCCAAAGATGTTTTCATC................................ 22 2 4 1.00 4 0 0 0 0 0 4
......................................................AAAGTAGGGTCCTTGATAGATC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.....................................................TAAAGTAGGGTACTTGATAGATA......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................AGGTAGGGTACTTGATAGATCCG....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTACTTGATCGGTCCT....................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0
......................................................AAAGGAGGGTACTTGATAGATCC........................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
......................................................AAGGTAGGGTACTTGATAGATCT........................................................................................ 23 2 1 1.00 1 0 0 1 0 0 0
......................................................AAAGTAAGGTACTTGATAGATCC........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTATGGTACTTGATAGAT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.......................................................AAGTAGGGTACTTGATAGATCCT....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................AAGTAGGGTACTTGATAGATCCA....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
......................................................ATAGTAGGGTACTTGATAGATCC........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTACTTGATAGATCA........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGCAGGGTACTTGATAGATCC........................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
......................................................AAAGTAGGGTACTTGGTAGATCC........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTATTTGATAGATC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTACTTGATAGAC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................TAAAGTAGGGTACTTGATAGATCT........................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTACTCGATAGATC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTACTTGATCGATCC........................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0
......................................................AATGTAGGGTACTTGATAGATCC........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.....................................................TAAAGTAGGGTACTTGATAGA........................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTACTTGATAGAGCC........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................AAGTAGGGCACTTGATCGATCCG....................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.....................................................TAAAGTAGGGTACTTGATAGATT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTACTTGATAGAG.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTACATGATAGATCC........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTACTTGGTAGAT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTAGTTGATAGAT.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.......................................................AAGTAGGGTACTTGATAGATGCG....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.....................................................TAAAGTAGGGTACTTGATAGATC......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.....................................................TAAAGTAGGGTACTTGATAGAT.......................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGTACTAGATCGATC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
......................................................AAAGTAGGGCACTTGATAGATCC........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGGAGGGAACTTGATAGATG......................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0
......................................................AAAGTAGGGTACTTGATAGATAC........................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
......................................................AAAGAAGGGGACTTGATAGAT.......................................................................................... 21 2 2 0.50 1 0 0 1 0 0 0
...............................................................................................................ATTTGCCAAAGATATTTTC................................... 19 1 4 0.50 2 0 0 0 0 1 1
.......................................................AAGCAGGGTACTTGACAGATCC........................................................................................ 22 2 3 0.33 1 0 0 1 0 0 0
..................................................GAATAATGTAGGGTGCTTAA............................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0
................................................................................................................TTTTCCAAAGATGTTTTC................................... 18 1 7 0.14 1 0 0 0 0 0 1
..................................................GAATAAAGTAGAGTACTTAAA.............................................................................................. 21 3 15 0.07 1 0 0 1 0 0 0
...............................................................................................................ATTTGCCAAAGATATTTGC................................... 19 2 15 0.07 1 0 0 0 0 1 0
.................................................................................ATTTTTTTGGATCGGTCATTA............................................................... 21 3 17 0.06 1 0 0 1 0 0 0
...............................................................................................................ATTTTCCAAATATGTTTTC................................... 19 2 20 0.05 1 0 0 0 0 1 0
...............................................................................................................ATTTGCCAAACATATTTTC................................... 19 2 20 0.05 1 0 0 0 0 1 0
................................................................................................................TTTTCCGAAGATGTTTTC................................... 18 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GAATTTTACGTACTCACATAAATTTAACTTATAATATATTTTTAGAATCACTTATTTCATCCCATGAACTATCTAGGCAAATAAAATAACCTAGATAGTAATGGGATAAAATAAAAGGTTTCTATAAAAGCAGGAGTCTATACATTTTAACATTTAGGAAAAATT

*************************************...(((((...(((((((((((((((..(((((((((((..........))))))))))).)))))))))))))))....)))))....*************************************** 		Read size # Mismatch Hit Count Total Norm Total V055

head

 V039

embryo

 V106

head
..........................................................................................CTAGATCGTAATGGGGTA......................................................... 18 2 1 1.00 1 1 0 0
......................................................................................TAACCTAGATCTTAATGG............................................................. 18 2 6 0.17 1 0 1 0
.........................................................................................................ATAAAGTAAGAGGTTACTATA....................................... 21 3 12 0.08 1 0 1 0
........................................................................................ACCTAGAGAGGAATGGTAT.......................................................... 19 3 16 0.06 1 0 0 1
...................................................TTGTCCCATCCCATGAACT............................................................................................... 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13335:211408-211572 + dan_225 candidate CTTAAAATGCATGAGTGTATTTAAATTGAATATTATATAAAAATCTTAGTGAATAAAGTAGGGTACTTGATAGATCCGTTTATTTTAT-----------------------------------TGGATCTATCATTACCCTATTTTATTTTCCAAAGATATTTTCGTCCTCAGATATGTAAAATTGTAAATCCTTTTTAA
droBip1 scf7180000396512:27262-27394 - TTA--------------------AATTGGAAATTTTATTAAAAATTTAAGAAATAT------------AAGAGGACAGTTTATATTATTAATATAATTACATTTTAATGAATATTTATAATATTTA-------------------TATTTTCTAAAAATGTT-TCATTTTC---------------CAAGTCCGTTTTAA
droEle1 scf7180000490564:1566833-1566852 + TATAAAATACAT---------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------TATTTAA
droRho1 scf7180000761098:1049-1098 + TTTG------------------------------------------------------------------------------TTTTAT-----------------------------------TTATTTTGCCGTTATTCTATTTTATTTT-------------------T---------------ATAGGCAATTT---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CTTAAAATGCATGAGTGTATTTAAATTGAATATTATATAAAAATCTTAGTGAATAAAGTAGGGTACTTGATAGATCCGTTTATTTTAT-----------------------------------TGGATCTATCATTACCCTATTTTATTTTCCAAAGATATTTTCGTCCTCAGATATGTAAAATTGTAAATCCTTTTTAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
......................................................AAAGTAGGGTACTTGATAGATCC...........................................................................................................................23199.0099200106720
......................................................AAAGTAGGGTACTTGATAGATC............................................................................................................................22160.00602103477
......................................................AAAGTAGGGTACTTGATAGAT.............................................................................................................................21144.00442003381
.......................................................AAGTAGGGTACTTGATAGATCCG..........................................................................................................................23121.00211002171
.......................................................AAGTAGGGTACTTGATAGATCC...........................................................................................................................22114.0014100292
......................................................AAAGTAGGGTACTTGATAGATCCT..........................................................................................................................2416.006000051
......................................................AAAGTAGGGTACTTGATAGATCT...........................................................................................................................2315.005000131
.......................................................AAGTAGGGTACTTGATAGATC............................................................................................................................2115.005000140
......................................................AAAGTAGGGTACTTGATAGA..............................................................................................................................2014.004000040
......................................................AAAGTAGGGTACTTGATAGATCCA..........................................................................................................................2414.004000040
.......................................................AAGTAGGGTACTTGATAGAT.............................................................................................................................2013.003000030
......................................................AAAGTAGGGTACTTGATAGATCCG..........................................................................................................................2412.002000011
......................................................AAAGTAGGGTACTTGATAGATA............................................................................................................................2212.002000110
..............................................................................................................................ATCTATCATTACCCTATTTTAT....................................................2212.002200000
..................................................................................................................................................ATTTTCCAAAGATATTTT....................................1811.001001000
.....................................................TAAAGTAGGGTACTTGATAGATA............................................................................................................................2311.001000010
.......................................................AAGTAGGGTACTTGATAGATCCT..........................................................................................................................2311.001000010
.......................................................AAGTAGGGTACTTGATAGATCCA..........................................................................................................................2311.001000010
......................................................AAAGTAGGGTACTTGATAGATCA...........................................................................................................................2311.001000010
......................................................AAAGTAGGGTACTTGATAGAC.............................................................................................................................2111.001000010
.....................................................TAAAGTAGGGTACTTGATAGATCT...........................................................................................................................2411.001000010
.....................................................TAAAGTAGGGTACTTGATAGA..............................................................................................................................2111.001000010
.....................................................TAAAGTAGGGTACTTGATAGATT............................................................................................................................2311.001000010
......................................................AAAGTAGGGTACTTGATAGAG.............................................................................................................................2111.001000010
.....................................................TAAAGTAGGGTACTTGATAGATC............................................................................................................................2311.001000010
.....................................................TAAAGTAGGGTACTTGATAGAT.............................................................................................................................2211.001000010
droBip1
TTA--------------------AATTGGAAATTTTATTAAAAATTTAAGAAATAT------------AAGAGGACAGTTTATATTATTAATATAATTACATTTTAATGAATATTTATAATATTTA-------------------TATTTTCTAAAAATGTT-TCATTTTC---------------CAAGTCCGTTTTAASizeHit CountTotal NormTotal
No Reads
droEle1
TATAAAATACAT---------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------TATTTAASizeHit CountTotal NormTotal
No Reads
droRho1
TTTG------------------------------------------------------------------------------TTTTAT-----------------------------------TTATTTTGCCGTTATTCTATTTTATTTT-------------------T---------------ATAGGCAATTT---SizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 07:41 PM