dan_2246

Name	Class	Family	Strand
Gypsy8-I_Dpse-int	LTR	Gypsy	+
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTCTGGACGGCATTCCATCGCTGAAGAAACGAAAATCTCTAACAGTCTATGTGAGTCCTAAACCGCAACAGTTGCAACCACAGCAGTTGCCACCACCATCGTCGATACAACCACCATCGATGAACAACAACAGCAGCAACAGCGCCGCGCAGCACAGTCTGCAGACCCTGCTCCTCCAAGTCCCAGGAGCAGCAGCAGCCGCCGCCGCCGGGGCAGCAGCATCGGCAGCAGCAAGCTCTTCCTCCACAGCC ************************************************....(((.......(((((.((((......)))).)))))........((((((((.........)))))))).........((.((......)).))((((......)))).))).(((((.((((........)))).)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V039 embryo	M058 embryo	V055 head	V106 head	M044 female body	V105 male body
....GGACGGCATTCCATCGCTGAAGAAAC.............................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0
............................ACGAAAATCTCTAACAGTCTATCC.......................................................................................................................................................................................................	24	2	1	1.00	1	0	1	0	0	0	0
..............................................................................CACAGCAGATGACACCACC..........................................................................................................................................................	19	2	1	1.00	1	0	0	1	0	0	0
..........................................................................................................ACAACCAGCATCGATGATCTA............................................................................................................................	21	3	2	0.50	1	1	0	0	0	0	0
............................................................................................................................................................................................GCAGCAGCAGCCGCCGCCGCCG.........................................	22	0	2	0.50	1	0	0	0	0	1	0
..........................................................................................................ACAACCACCTTCGATGATCTACA..........................................................................................................................	23	3	2	0.50	1	1	0	0	0	0	0
..............................................................................CAAAGCAGGTGCCACCACC..........................................................................................................................................................	19	2	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................................TAGAAACAGCGCCGCGCAGT..................................................................................................	20	3	3	0.33	1	1	0	0	0	0	0
..........................................................................................................ACAACCACCATCTATGAT...............................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0
..........................................................................................................ACAACCACCATCTATGAGCT.............................................................................................................................	20	3	5	0.20	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................CATCATCAGCAGCAAGCCCTTC..........	22	3	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................................................................................................GCCGGGGCGGCAGAATTGGCA........................	21	3	6	0.17	1	0	0	0	0	0	1
................................................................................CAGCAGTCGCGACCACCA.........................................................................................................................................................	18	2	9	0.11	1	0	1	0	0	0	0
.......................................................................................................................ATGAACAACAACGGCACCAA................................................................................................................	20	2	9	0.11	1	0	1	0	0	0	0
..............................................................................................................................................................................................................GCCGGGGCGGCAGAATTGGC.........................	20	3	20	0.10	2	0	0	0	1	0	1
.............................................TCGATGTGAGTCCTGAA.............................................................................................................................................................................................	17	2	14	0.07	1	0	0	1	0	0	0
..........................................................TAAACCGCAACAGCTACCAC.............................................................................................................................................................................	20	3	15	0.07	1	0	1	0	0	0	0
...........................................................................AACCACAACCGTTCCCACCA............................................................................................................................................................	20	3	16	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................GGACAGCAGCATCAGCAGCAGCAGGC...............	26	3	16	0.06	1	0	1	0	0	0	0
..........................................................................................................................................................CAGTATGCAGAGCCTGC................................................................................	17	2	20	0.05	1	0	0	1	0	0	0
........................................................................................................TCACAACCACGATCGATGA................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0

AAGACCTGCCGTAAGGTAGCGACTTCTTTGCTTTTAGAGATTGTCAGATACACTCAGGATTTGGCGTTGTCAACGTTGGTGTCGTCAACGGTGGTGGTAGCAGCTATGTTGGTGGTAGCTACTTGTTGTTGTCGTCGTTGTCGCGGCGCGTCGTGTCAGACGTCTGGGACGAGGAGGTTCAGGGTCCTCGTCGTCGTCGGCGGCGGCGGCCCCGTCGTCGTAGCCGTCGTCGTTCGAGAAGGAGGTGTCGG ************************************************....(((.......(((((.((((......)))).)))))........((((((((.........)))))))).........((.((......)).))((((......)))).))).(((((.((((........)))).)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	V055 head	V106 head	V105 male body	V039 embryo	M058 embryo
..................................................................................................................................ATCGTCGTTGTAGCGGCGCGTCGT.................................................................................................	24	2	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................GTGTCGGACGTATGGGACGACGAG...........................................................................	24	3	3	0.33	1	0	1	0	0	0	0
........................................................................................GTGTGATGGTAGCAGCTATG...............................................................................................................................................	20	3	4	0.25	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................CCATCGTCGTTAGAGAAGG.........	19	2	4	0.25	1	0	1	0	0	0	0
....................................................................................TAAACGGTGGTGGTAGTAG....................................................................................................................................................	19	2	6	0.17	1	1	0	0	0	0	0
.............................................AGATATACTCATGATTTG............................................................................................................................................................................................	18	2	11	0.09	1	0	1	0	0	0	0
.....................................................................................CAACGGTCGTGGGAGCTGCTA.................................................................................................................................................	21	3	16	0.06	1	0	0	0	1	0	0
.............................................................................................................................................................TGACGTCAGGGACGAGGA............................................................................	18	2	18	0.06	1	0	0	0	0	1	0
..................................................................................................................................................................................................TGTCGGCGGCGGCGGCCTCG.....................................	20	2	18	0.06	1	0	0	1	0	0	0
..........................................................................................GTGATGGTAGCCGCTACGT..............................................................................................................................................	19	3	19	0.05	1	0	0	0	0	0	1
...........................................................................................................................................CGCGCGGCGGGTCGTGTCA.............................................................................................	19	3	20	0.05	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13335:1478052-1478302 +	dan_2246	TTCTGGACGGCATTCCATCGCTGAAGAAACGAAAATCTCTAACAGTCTATGTGAGTCCTA------AACCGCAACAGTTGCAACCACAGCAGTTGCCACCACCATCG------TCGATAC------------------------------------------AACCAC------CA---TC--------------------------GATGAACAACAACA----G--C---AGCA------------------------------------------------------------------------------------ACAGCG-CCGCGCAGCACAGTCTGCAGACCCTGCTCCTCCAAGTCCC---AGGAG------CAGCAGCAGCCGCCGCCGCCG------GGGCAGCAGCATCGG------------CAGCAGC---AAGCTCTTCCTCCACAG-CC
droBip1	scf7180000395441:76374-76679 +		TTCTGGACGGCATACCCTCGCTGAAGAAACGAAAATCTCTAACAGTCTATGTGAGTCCTA------AACCGCAACAGTTGCCGCAACAGCAGTTGCAA---CAGTTG------CCACCAC------------------------------------------TACCAC------CA---CC-A-----------CCACCACCATC---GTCGTCGTCGACGTCGTCGTTGGTAGCACCGCCCTCGTCATCGTCGTCGATGAACAGCAGCACCA-----------------------------------------------CCAGCG-CCGCGCAGCACAGTCTGCAGACCCTGCTCCTGCAAGTTCC---AGGAG------CAGCAGCAGCAGCCGCCGCCGCAGCCGCTGCAGCAG---CAT------------CGGCAGC---AAGCTCTTCCTCCACAG---
droKik1	scf7180000302586:115249-115472 -		TATTGGATGGCATACCATCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAACAGCTGCCGCAGCATCAATTGCAG---CAGTTACAGCAGCAGCTGC------------------------------------------AGCCAC------CGGCGGCCA------------------------GATTGACGTCGACGGCGAT--CGGCAACA-------------------------------------------------------------------------------------------ACGCGCAGCAAACGTTGCAGACCCTTCTCCTGCAGGTGCC---AGCAT---------------------------------------------CGA---------------CGGC---GAGCTCCTCTTCCACTA-TC
droFic1	scf7180000454077:2363376-2363590 -		TTTTGGATGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGCTGCCACAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACA---AC--CGGCAGCA-------------------------------------------------------------------------------------------ACGCGCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTGCCACCAGCAT---------------------------------------------CG---------------GCGGC---CAGTTGCTCCTCCACAT-CC
droEle1	scf7180000491023:1578032-1578243 -		TTTTGGATGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGCTGCCACAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACG---AC--C---AGCA-------------------------------------------------------------------------------------------ACGCGCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTGCC---AGCAT---------------------------------------------CGG------------CGGCGGC---CAGCTGCTCCTCCACAT-CC
droRho1	scf7180000779966:71360-71568 -		TTTTGGATGGCATACACTCGCTGAAGAAACGCAAATCCTTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGCTGCCTCAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACG---AC--C---AGCA-------------------------------------------------------------------------------------------ACGCGCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTGCC---AGCAT---------------------------------------------CG---------------GCGGC---CAGCTGCTCCTCCACAT-CC
droBia1	scf7180000302075:556121-556341 -		TTTTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGCTGCCACAGCATCATTTGCAG---CAGCTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACG---AC--C---AGCA-------------------------------------------------------------------------------------------GCGCGCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTGCC---AGCAT---------------------------------------------CGG------CGGCGGCGGCGGCCACAAGCTGCTCCTCCACGT-CC
droTak1	scf7180000415351:84224-84450 +		TTTTGGATGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGCTGCCGCAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACG---AC--CAGCAGCA-------------------------------------------------------------------------------------------ACGCGCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTGCC---ATCAT---------------------------------------------CTGCGGCGGCGGCGGCGGCGGC---CAGCTGCTCCTCCACGT-CC
droEug1	scf7180000409110:224437-224651 -		TATTGGATGGCATACACTCGCTGAAGAAGCGCAAATCTCTAACAGTCTATGTGAGTCCTA------AACCGCAACAGCTGCCACAGCATCAATTGCAG---CAGCTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACG---AC--C---AGCA-------------------------------------------------------------------------------------------ACGCGCAGCAATCGCTGCAGACCCTTCTTTTACAGGTGCC---ACCAT---------------------------------------------CGG------T---GGCGGCGGC---CAGCTGCTCCTCCACAT-CT
dm3	chrX:16323391-16323602 +		TATTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGATGCAACAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCC------------------------GAATGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GTGCTCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTACC---AGCAT---------------------------------------------CGG------------CGGCGGC---TAGCTGCTCATCCACAT-CC
droSim2	x:15432753-15432955 +		TATTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGTTGCCACAGCATCAATTGCA------------------GCTGC------------------------------------------AACCAC------CG---GCCC------------------------GAATGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GTGCTCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTACC---AGCAT---------------------------------------------CGG------------CGGCGGC---TAGCTGCTCATCCACAT-CC
droSec2	scaffold_17:143103-143305 +		TATTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGTTGCCACAGCATCAATTGCA------------------GCTGC------------------------------------------AACCAC------CG---GCCC------------------------GAATGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GTGCTCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTACC---AGCAT---------------------------------------------CGG------------CGGCGGC---TAGCTGCTCATCCACAT-CC
droYak3	X:10442773-10442990 +		TTTTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGATGCCACAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AGCCAC------CG---GCCC------------------------GAATGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GCGCACAGCAATCGCTGCAGACCCTTCTCTTGCAGGTACC---AGCAT---------------------------------------------CGG------CAACGTCGGCGGC---TAGCTGCTCATCCACAT-CC
droEre2	scaffold_4690:10774136-10774353 -		TTTTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGATGCCACAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCC------------------------GATTGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GTTCACAGCAATCGCTGCAGACCCTTCTCTTGCAGGTACC---AGCAT---------------------------------------------CGG------CAGCGGCGGCGCC---TAGCTGCTCATCCACAT-CC
dp5	XL_group1e:3102679-3102884 -		TATTGGACGGCATACCCTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAACAACAACAACAA---CAACAGCA------------------TCAGC------------------------------------------AGCAAC------CG---GCCA------------------------GATTGACGGCGACGGCTACGGCGACAGCAA---CCTCGTCGC---------------------------------------------------------------------------------AACAGCAAACCCTGCAGACCCTTCTATTGCAGGTGCC---AAC------------------------------------------------GA------------TAACGGT---CAGCTCCTCCTCC-------
droPer2	scaffold_17:36749-36951 -		TATTGGACGGCATACCCTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAACAACAA------CAACAACAGCA------------------TCAGC------------------------------------------AGCAAC------CG---GCCA------------------------GATTGACGGCGACGGCTACGGCGACAGCAA---CCTCGTCGC---------------------------------------------------------------------------------AACAGCAAACCCTGCAGACCCTTCTATTGCAGGTGCC---AAC------------------------------------------------GA------------TAACGGT---CAGCTCCTCCTCC-------
droWil2	scf2_1100000013329:793-1013 -		CAACAA-CAGCA----------------------------------------------------------ACAACAACTGCAGCAGCAACAATTGCAG---CAACAACAGCAACAGCAGCAACAATGGCAGCAACAACAACAGCAACAACAACT---G----------------------------------------------------------------------CAGCAGCAA---CAACAACA-------------------------------------------------------------------------------GC-AGCAACAACAACTGCAGCAGCAACAATTGCAGCAA-C---AACAACAACAGCAGCAACAACAACAGCAGCAG------CAACAACAGCATCAG------------CAACAGC---A-ACAGCAGCAACGAATGCA
droVir3	scaffold_12472:186696-186916 -		TATTGGATGGCATACCCTCGCTGAAGAAACGCAAATCGTTAACAGTCTATGTGAGTCCAA------AGC---AACAGCTACAACAACAACAACAACAA---------------------C---------------------------AACAGCA---TCAGCAGCAAC----------------------------------------------AACAACAACAACAGCAGCAGCAG---C--------------------------------AGCAGCAACAACAACAGAATGTTGCAAGAACAACGAGCGCGGCGGCG------GAGTCACAGCAAACACTGCAGACCCTTTTATTGCAGGTGCC-------------------------------------------------------------------------------------------------C
droMoj3	scaffold_6359:3383763-3383995 -	dmo_578	TTTTGGATGGCATACCGTCGCTGAAGAAACGCAAATCGTTAACAGTTTATGTGAGTCCAA------AG---CAACAGCTACAACAGCAACAACAACA------------------GCTAC---------------------------AACAGCA---GCAGCAGCAGC----------------------------------------------AGCAACAGCAACAACAACAACAA---C--------------------------------AGCAGCAGCAGGTGCAGCATACAGCAAGAGCAACGAGCGCGGCGGCG------GAATCACAGCAAACGCTGCAGACCCTTTTATTGCAGGTGCC---CTCAG---------------------------------------------CGG------------CG----------------------------
droGri2	scaffold_14853:6832096-6832315 +		TTTTGGATGGCATACCTCAGCTGAAGAAACGCAAATCGTTAACAGTCTATGTGAGTCCGAGTCCCAAGCAACAGCAGCAAGCACAGCAACAACAGTC---------------------GC---------------------------AACAACATTCTCAGCAACAGCATGCAACAGGGGCAAGATCAACAACGAAACCATCAGCTGCGGCGGCGGCGGCG---GC---GGTGGCA------------------------------------------------------------------------------------------GAGTCGCAACAAACATTGCAAACCCTTTTATTGCAGGT-----------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TTCTGGACGGCATTCCATCGCTGAAGAAACGAAAATCTCTAACAGTCTATGTGAGTCCTA------AACCGCAACAGTTGCAACCACAGCAGTTGCCACCACCATCG------TCGATAC------------------------------------------AACCAC------CA---TC--------------------------GATGAACAACAACA----G--C---AGCA------------------------------------------------------------------------------------ACAGCG-CCGCGCAGCACAGTCTGCAGACCCTGCTCCTCCAAGTCCC---AGGAG------CAGCAGCAGCCGCCGCCGCCG------GGGCAGCAGCATCGG------------CAGCAGC---AAGCTCTTCCTCCACAG-CC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....GGACGGCATTCCATCGCTGAAGAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
............................ACGAAAATCTCTAACAGTCTATCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................G------CAGCAGCAGCCGCCGCCGCCG------.........................................................	22	2	0.50	1	1	0	0	0	0	0

droBip1

TTCTGGACGGCATACCCTCGCTGAAGAAACGAAAATCTCTAACAGTCTATGTGAGTCCTA------AACCGCAACAGTTGCCGCAACAGCAGTTGCAA---CAGTTG------CCACCAC------------------------------------------TACCAC------CA---CC-A-----------CCACCACCATC---GTCGTCGTCGACGTCGTCGTTGGTAGCACCGCCCTCGTCATCGTCGTCGATGAACAGCAGCACCA-----------------------------------------------CCAGCG-CCGCGCAGCACAGTCTGCAGACCCTGCTCCTGCAAGTTCC---AGGAG------CAGCAGCAGCAGCCGCCGCCGCAGCCGCTGCAGCAG---CAT------------CGGCAGC---AAGCTCTTCCTCCACAG---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TATTGGATGGCATACCATCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAACAGCTGCCGCAGCATCAATTGCAG---CAGTTACAGCAGCAGCTGC------------------------------------------AGCCAC------CGGCGGCCA------------------------GATTGACGTCGACGGCGAT--CGGCAACA-------------------------------------------------------------------------------------------ACGCGCAGCAAACGTTGCAGACCCTTCTCCTGCAGGTGCC---AGCAT---------------------------------------------CGA---------------CGGC---GAGCTCCTCTTCCACTA-TC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTTGGATGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGCTGCCACAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACA---AC--CGGCAGCA-------------------------------------------------------------------------------------------ACGCGCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTGCCACCAGCAT---------------------------------------------CG---------------GCGGC---CAGTTGCTCCTCCACAT-CC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTTGGATGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGCTGCCACAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACG---AC--C---AGCA-------------------------------------------------------------------------------------------ACGCGCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTGCC---AGCAT---------------------------------------------CGG------------CGGCGGC---CAGCTGCTCCTCCACAT-CC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTTGGATGGCATACACTCGCTGAAGAAACGCAAATCCTTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGCTGCCTCAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACG---AC--C---AGCA-------------------------------------------------------------------------------------------ACGCGCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTGCC---AGCAT---------------------------------------------CG---------------GCGGC---CAGCTGCTCCTCCACAT-CC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGCTGCCACAGCATCATTTGCAG---CAGCTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACG---AC--C---AGCA-------------------------------------------------------------------------------------------GCGCGCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTGCC---AGCAT---------------------------------------------CGG------CGGCGGCGGCGGCCACAAGCTGCTCCTCCACGT-CC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTTGGATGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGCTGCCGCAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACG---AC--CAGCAGCA-------------------------------------------------------------------------------------------ACGCGCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTGCC---ATCAT---------------------------------------------CTGCGGCGGCGGCGGCGGCGGC---CAGCTGCTCCTCCACGT-CC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TATTGGATGGCATACACTCGCTGAAGAAGCGCAAATCTCTAACAGTCTATGTGAGTCCTA------AACCGCAACAGCTGCCACAGCATCAATTGCAG---CAGCTG------CAGCTGC------------------------------------------AACCAC------CG---GCCA------------------------GAATGACGGCGACG---AC--C---AGCA-------------------------------------------------------------------------------------------ACGCGCAGCAATCGCTGCAGACCCTTCTTTTACAGGTGCC---ACCAT---------------------------------------------CGG------T---GGCGGCGGC---CAGCTGCTCCTCCACAT-CT	Size	Hit Count	Total Norm	Total
No Reads

dm3

TATTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGATGCAACAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCC------------------------GAATGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GTGCTCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTACC---AGCAT---------------------------------------------CGG------------CGGCGGC---TAGCTGCTCATCCACAT-CC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
TATTGGACGGCATACACTCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CCC------------------------GAATGACCGCGACG---AT--C---AGC......................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ACTCGCTGAAGAAACGCAAATCCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GTG.......................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATACACTCGCTGAAGAAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CGGCATACACTCGCTGAAGAAACGCAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTCCTA------AACCGCAGCAGATGC................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AGGTACC---AGCAT---------------------------------------------CGG------------CGGC..........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCATACACTCGCTGAAGAAACGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................TGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GTGCTCAGC.................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................AATCGCTGCAGACCCTTCTCT............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTCCTA------AACCGCAGCAGATG.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CGGCATACACTCGCTGAAGAAACGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TACACTCGCTGAAGAAACGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATTGGACGGCATACACTCGCTGAAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTGGACGGCATACACTCATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TATTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGTTGCCACAGCATCAATTGCA------------------GCTGC------------------------------------------AACCAC------CG---GCCC------------------------GAATGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GTGCTCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTACC---AGCAT---------------------------------------------CGG------------CGGCGGC---TAGCTGCTCATCCACAT-CC

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

TATTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGTTGCCACAGCATCAATTGCA------------------GCTGC------------------------------------------AACCAC------CG---GCCC------------------------GAATGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GTGCTCAGCAATCGCTGCAGACCCTTCTCTTGCAGGTACC---AGCAT---------------------------------------------CGG------------CGGCGGC---TAGCTGCTCATCCACAT-CC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................................................................................................................................................................................................................CAATCGCTGCAGACCCTTCTCT............................................................................................................	22	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................................ATGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GT........................................................................................................................................	21	1	1.00	1	0	1	0	0

droYak3

TTTTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGATGCCACAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AGCCAC------CG---GCCC------------------------GAATGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GCGCACAGCAATCGCTGCAGACCCTTCTCTTGCAGGTACC---AGCAT---------------------------------------------CGG------CAACGTCGGCGGC---TAGCTGCTCATCCACAT-CC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........ATACACTCGCTGAAGAAACGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TTTTGGACGGCATACACTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAGCAGATGCCACAGCATCAATTGCAG---CAGTTG------CAGCTGC------------------------------------------AACCAC------CG---GCCC------------------------GATTGACCGCGACG---AT--C---AGCA-------------------------------------------------------------------------------------------GTTCACAGCAATCGCTGCAGACCCTTCTCTTGCAGGTACC---AGCAT---------------------------------------------CGG------CAGCGGCGGCGCC---TAGCTGCTCATCCACAT-CC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dp5

TATTGGACGGCATACCCTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAACAACAACAACAA---CAACAGCA------------------TCAGC------------------------------------------AGCAAC------CG---GCCA------------------------GATTGACGGCGACGGCTACGGCGACAGCAA---CCTCGTCGC---------------------------------------------------------------------------------AACAGCAAACCCTGCAGACCCTTCTATTGCAGGTGCC---AAC------------------------------------------------GA------------TAACGGT---CAGCTCCTCCTCC-------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
TATTGGACGGCATACCCTCGCTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................GC---------------------------------------------------------------------------------AACAGCAAACCCTGCAGACC...................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................AACGCAAATCCCTAACAGTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GAAACGCAAATCCCTAACAGTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TATTGGACGGCATACCCTCGCTGAAGAAACGCAAATCCCTAACAGTCTATGTGAGTCCTA------AACCGCAACAACAA------CAACAACAGCA------------------TCAGC------------------------------------------AGCAAC------CG---GCCA------------------------GATTGACGGCGACGGCTACGGCGACAGCAA---CCTCGTCGC---------------------------------------------------------------------------------AACAGCAAACCCTGCAGACCCTTCTATTGCAGGTGCC---AAC------------------------------------------------GA------------TAACGGT---CAGCTCCTCCTCC-------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........CATACCCTCGCTGAAGAAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.ATTGGACGGCATACCCTCGCTGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................AAC------CG---GCCA------------------------GATTGACGGCG.......................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................CTCGCTGAAGAAACGCAAATCCCTAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0

droWil2

CAACAA-CAGCA----------------------------------------------------------ACAACAACTGCAGCAGCAACAATTGCAG---CAACAACAGCAACAGCAGCAACAATGGCAGCAACAACAACAGCAACAACAACT---G----------------------------------------------------------------------CAGCAGCAA---CAACAACA-------------------------------------------------------------------------------GC-AGCAACAACAACTGCAGCAGCAACAATTGCAGCAA-C---AACAACAACAGCAGCAACAACAACAGCAGCAG------CAACAACAGCATCAG------------CAACAGC---A-ACAGCAGCAACGAATGCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................AACAACAGCAACAGCAGCAACAATGG.................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	7	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AATTGCAGCAA-C---AACAACAACAGC...................................................................................	24	10	0.20	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CAA-C---AACAACAACAGCAGCA...............................................................................	20	20	0.20	4	0	0	0	4	0
.......................................................................................AACAATTGCAG---CAACAACAGCA.................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	1	0	2	0
.......................................................................................AACAATTGCAG---CAACAACAG...................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0
................................................................................................AG---CAACAACAGCAACAGCAGCAA.......................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0
........................................................................................................................AACAATGGCAGCAACAACAACAGC.................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	2	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCAG------------CAACAGC---A-ACAGCAGCAACGAA....	26	9	0.11	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................CAACAACTGCAGCAGCAACAATTGC.........................................................................................................	25	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................................................GCAA---CAACAACA-------------------------------------------------------------------------------GC-AGCAACA................................................................................................................................	21	20	0.10	2	0	0	0	2	0
................................................................................................AG---CAACAACAGCAACAGCAG..........................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAG------CAACAAC..................................................	20	20	0.10	2	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................................................AACAATTGCAGCAA-C---AACAACAACAGC...................................................................................	27	10	0.10	1	0	1	0	0	0
.............................................................................................TGCAG---CAACAACAGCAACAGCAG..........................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AATTGCAGCAA-C---AACAACAACAG....................................................................................	23	10	0.10	1	0	1	0	0	0
.................................................................................................................................AGCAACAACAACAGCAACAACAACT---G----------------------------------------------------------------------.............................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0
.......................................................................................................................CAACAATGGCAGCAACAACAACAG..................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	1	0	1	0
.......................................................................CAACAACTGCAGCAGCAACAATTGC.................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------CAACAGC---A-ACAGCAGCAACG......	22	11	0.09	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCATCAG------------CAACAGC---A-ACAGCAG...........	27	12	0.08	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAG------CAACAACAGCATCAG------------..............................	27	12	0.08	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCATCAG------------CAACAGC---A-ACAG..............	27	12	0.08	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AATTGCAGCAA-C---AACAACA........................................................................................	19	13	0.08	1	0	0	0	1	0
.........................................................................................................................................................T---G----------------------------------------------------------------------CAGCAGCAA---CAACAACA-------------------------------------------------------------------------------GC-AGCAACA................................................................................................................................	28	14	0.07	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCATCAG------------CAACAGC---....................	22	14	0.07	1	0	0	0	1	0
...................................................................................................................................................AACAACT---G----------------------------------------------------------------------CAGCAGCAA---CAACAACA-------------------------------------------------------------------------------..........................................................................................................................................	25	15	0.07	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAG------------CAACAGC---A-ACAGCAG...........	23	17	0.06	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCATCAG------------CAACAGC---....................	19	17	0.06	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAG------------CAACAGC---A-ACAGCAGCAAC.......	24	19	0.05	1	0	1	0	0	0
............................................................................................................AGCAACAGCAGCAACAATGGCAG..............................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
........................................................................................................CAACAGCAACAGCAGCAACAATGG.................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...........................................................................................................................AATGGCAGCAACAACAACAGCAACAAC...........................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAG------C........................................................	19	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CAACAACTGCAGCAGCAACAATTGCAGC......................................................................................................	28	20	0.05	1	0	1	0	0	0
.........................................................................................................................................CAACAGCAACAACAACT---G----------------------------------------------------------------------CAG..........................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.......................................................................................................ACAACAGCAACAGCAGCAACAATGG.................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AACAATTGCAGCAA-C---AACAACAG.......................................................................................	23	20	0.05	1	0	1	0	0	0
......................................................................................................................................CAACAACAGCAACAACAACT---G----------------------------------------------------------------------CAGC.........................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..........................................................................................................................................AACAGCAACAACAACT---G----------------------------------------------------------------------CAGCAGCAA---C................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................AACAACTGCAGCAGCAACAATTG..........................................................................................................	23	20	0.05	1	0	1	0	0	0
.............................................................................................................................TGGCAGCAACAACAACAGCAACAA............................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.AACAA-CAGCA----------------------------------------------------------ACAACAACTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.................................................................................................................................AGCAACAACAACAGCAACAACAACT---G----------------------------------------------------------------------CAG..........................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------CAACAGC---A-ACAGCAGCA.........	19	20	0.05	1	0	1	0	0	0
........................................................................AACAACTGCAGCAGCAACAATT...................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................AACAACTGCAGCAGCAACAATT...........................................................................................................	22	20	0.05	1	0	1	0	0	0
......................................................................................CAACAATTGCAG---CAACAACAGCAA................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.........................................................................................................................ACAATGGCAGCAACAACAACAGCA................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AACAACAACTGCAGCAGCAAC...............................................................................................................	21	20	0.05	1	0	1	0	0	0
CAACAA-CAGCA----------------------------------------------------------ACAACAACTGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
........................................................................AACAACTGCAGCAGCAACAATTG..................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................................ACAGCAACAACAACT---G----------------------------------------------------------------------CAGCA........................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................................................AACAACAACT---G----------------------------------------------------------------------CAGCAGCAA---CA...............................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................................................................TGGCAGCAACAACAACAGCAACAACAA.........................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0
.............................................................................................................................................AGCAACAACAACT---G----------------------------------------------------------------------CAGCAGCAA---.................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..........................................................................................AATTGCAG---CAACAACAGCAACAGC............................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................AACAACAGCAACAGCAGCAACAATGGC................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.......................................................................................AACAATTGCAG---CAACAACAGCAA................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................................AGCAACAATGGCAGCAACAACAACA...................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................................................................................AACAACAACAGCAACAACAACT---G----------------------------------------------------------------------CAGC.........................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
...........................................................................................................................AATGGCAGCAACAACAACAGCAACA.............................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAACAACAACAGCA...................................................................	21	20	0.05	1	0	0	0	0	1
..............................................................................................................................GGCAGCAACAACAACAGCAACAA............................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................AA---CAACAACA-------------------------------------------------------------------------------GC-AGCAACAAC..............................................................................................................................	21	20	0.05	1	0	1	0	0	0
............................................................................................................AGCAACAGCAGCAACAATGG.................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
........................................................................................................................AACAATGGCAGCAACAACAACAGCA................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.............................................................................................................................................AGCAACAACAACT---G----------------------------------------------------------------------CAGCAGCAA---CA...............................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
................................................................................................................................................AACAACAACT---G----------------------------------------------------------------------CAGCAGCAA---C................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.......................................................................................AACAATTGCAG---CAACAACAGC..................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...........A----------------------------------------------------------ACAACAACTGCAGCAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAACAACAACA......................................................................	21	20	0.05	1	0	0	0	1	0
.............................................................................................................................TGGCAGCAACAACAACAGCAACAACAAC........................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
.......................................................................................AACAATTGCAG---CAACAACAGCAAC...............................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.........................................................................................................................ACAATGGCAGCAACAACAACAG..................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
....................................................................................................................................AACAACAACAGCAACAACAACT---G----------------------------------------------------------------------C............................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAG------CAACAA...................................................	20	20	0.05	1	0	0	0	1	0
.....................................................................................................CAACAACAGCAACAGCAGCAAC......................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.................................................................................................................CAGCAGCAACAATGGCAGCAA...........................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.............................................................................................TGCAG---CAACAACAGCAACAGCA...........................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.AACAA-CAGCA----------------------------------------------------------ACAACAACTGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.......................................................................CAACAACTGCAGCAGCAACAATTGCAG---C...........................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
...........................................................................................................................AATGGCAGCAACAACAACAGC.................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
............................................................................................TTGCAG---CAACAACAGCAACAGCAG..........................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...........A----------------------------------------------------------ACAACAACTGCAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
............................................................................................TTGCAG---CAACAACAGCAACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0

droVir3

TATTGGATGGCATACCCTCGCTGAAGAAACGCAAATCGTTAACAGTCTATGTGAGTCCAA------AGC---AACAGCTACAACAACAACAACAACAA---------------------C---------------------------AACAGCA---TCAGCAGCAAC----------------------------------------------AACAACAACAACAGCAGCAGCAG---C--------------------------------AGCAGCAACAACAACAGAATGTTGCAAGAACAACGAGCGCGGCGGCG------GAGTCACAGCAAACACTGCAGACCCTTTTATTGCAGGTGCC-------------------------------------------------------------------------------------------------C	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................GAAGAAACGCAAATCGTTAACAGTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ACCCTCGCTGAAGAAACGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGCAAATCGTTAACAGTCTATGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CGCTGAAGAAACGCAAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATACCCTCGCTGAAGAAACGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CCCTCGCTGAAGAAACGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................CAACAACAA---------------------C---------------------------AACAGCA---TCAG................................................................................................................................................................................................................................................................................................................	21	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................A---------------------C---------------------------AACAGCA---TCAGCAGCAAC----------------------------------------------...........................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................ACAGCA---TCAGCAGCAAC----------------------------------------------A..........................................................................................................................................................................................................................................................	18	16	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................G---C--------------------------------AGCAGCAACAACAACAGA..............................................................................................................................................................................	20	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................AACAA---------------------C---------------------------AACAGCA---TCAGCA..............................................................................................................................................................................................................................................................................................................	19	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................GCAGCAGCAG---C--------------------------------AGCAGCAACAAC....................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................CAACAACAACAGCAGCAGCAG---C--------------------------------AGC.............................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................ACAACAACAACAA---------------------C---------------------------AACAGCA---T...................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................AAC----------------------------------------------AACAACAACAACAGCAGC.........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GCAGCAG---C--------------------------------AGCAGCAACAA.....................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CAAC----------------------------------------------AACAACAACAACAGCAGCAGC......................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................CA---TCAGCAGCAAC----------------------------------------------AACAACA....................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AACAACAGCAGCAGCAG---C--------------------------------AGCA............................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ACAACAACAACAGCAGCAGCA.....................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CAGCAAC----------------------------------------------AACAACAACAACAGCA...........................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................CAACAA---------------------C---------------------------AACAGCA---TCAGC...............................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CAAC----------------------------------------------AACAACAACAACAGCAGC.........................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTTTGGATGGCATACCGTCGCTGAAGAAACGCAAATCGTTAACAGTTTATGTGAGTCCAA------AG---CAACAGCTACAACAGCAACAACAACA------------------GCTAC---------------------------AACAGCA---GCAGCAGCAGC----------------------------------------------AGCAACAGCAACAACAACAACAA---C--------------------------------AGCAGCAGCAGGTGCAGCATACAGCAAGAGCAACGAGCGCGGCGGCG------GAATCACAGCAAACGCTGCAGACCCTTTTATTGCAGGTGCC---CTCAG---------------------------------------------CGG------------CG----------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....GGATGGCATACCGTCGCTGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................CAACAACAACAACAA---C--------------------------------AGC.............................................................................................................................................................................................	19	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................................................................................................CAACAGCAACAACAACAACAA---.................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................................................................AC---------------------------AACAGCA---GCAGCAGCAGC----------------------------------------------AGCAACA....................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................ACAACAACAACAA---C--------------------------------AGCAGCAGC.......................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
....................................................................................................................CTAC---------------------------AACAGCA---GCAGCAGCA...........................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................AACAACAACAACAA---C--------------------------------AGCA............................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droGri2

TTTTGGATGGCATACCTCAGCTGAAGAAACGCAAATCGTTAACAGTCTATGTGAGTCCGAGTCCCAAGCAACAGCAGCAAGCACAGCAACAACAGTC---------------------GC---------------------------AACAACATTCTCAGCAACAGCATGCAACAGGGGCAAGATCAACAACGAAACCATCAGCTGCGGCGGCGGCGGCG---GC---GGTGGCA------------------------------------------------------------------------------------------GAGTCGCAACAAACATTGCAAACCCTTTTATTGCAGGT-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................................................................................TGCGGCGGCGGCGGCG---GC---G...........................................................................................................................................................................................................................................	19	7	0.14	1	1	0
..............................................................................................................................................................................................................GCGGCGGCGGCGGCG---GC---G...........................................................................................................................................................................................................................................	18	20	0.05	1	1	0

dan_2246

scaffold_13335:1478102-1478252 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads