ID:

dan_2224

 Coordinate:

scaffold_13150:34824-34974 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-18.1 -17.5 -17.1

Flybase annnotation

CDS [Dana\GF18978-cds]; exon [dana_GLEANR_20368:7]; intron [Dana\GF18978-in]

No Repeatable elements found

mature
  1. scaffold_6928:524-545 -
  2. scaffold_8795:3197-3218 -
  3. scaffold_8989:1213-1234 +
  4. scaffold_10046:191-212 +
  5. scaffold_10046:992-1013 +
  6. scaffold_12163:371-392 -
  7. scaffold_12368:632-653 -
  8. scaffold_12954:4852-4873 +
  9. scaffold_12954:7159-7180 +
  10. scaffold_12989:45-66 +
  11. scaffold_12989:781-802 +
  12. scaffold_12989:2651-2672 +
  13. scaffold_12989:2970-2991 +
  14. scaffold_12989:3031-3052 +
  15. scaffold_13150:14318-14339 -
  16. dan_2224  scaffold_13150:34861-34882 -
  17. scaffold_13693:77175-77196 +
  18. scaffold_13693:84970-84991 +
star
  1. scaffold_1423:541-561 +
  2. scaffold_2460:1145-1165 +
  3. scaffold_7277:1203-1223 -
  4. scaffold_8391:800-820 -
  5. scaffold_9044:22108-22128 -
  6. scaffold_9156:5998-6018 -
  7. scaffold_9232:7123-7143 +
  8. scaffold_10081:2391-2411 -
  9. scaffold_10081:13116-13136 -
  10. scaffold_10081:15192-15212 -
  11. scaffold_12942:17788-17808 -
  12. scaffold_12971:67-87 +
  13. scaffold_13013:9812-9832 +
  14. scaffold_13150:14995-15015 -
  15. dan_2224  scaffold_13150:34906-34926 -
  16. scaffold_13165:621583-621603 -
  17. scaffold_13201:77002-77022 -
  18. scaffold_13252:897-917 -
  19. scaffold_13252:1792-1812 -
  20. scaffold_13252:2464-2484 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGGCAGGGGTGTGCGCCTCCTCCAGTAGCCAGCAATGTCACCTCCTCCAGGTTAGGGGCAGGGGCCAGCCAGGTCGCCTCCTCCAGCTGCCAGCCAGGTCGCTTCCTCCAGCAGCCAGCCAGGTCGCCTCCTCCAGGTTAGGGGCAGGGTCCAGCCAGGTCGCCTCCTCCAGCAGCCAGCCAGGTCGCCTCCTCCAGGTCAGAGGCATGGGCAGGGGTGTGCGCCTCCTCCAGTAGCCAGCCAGGTCGCCT
**************************************************************************************************..((..(((...((.(((.(((.....((((.....))))....)))..)))...)).)))..)).*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 V039
embryo
 V055
head
.....................................................................................GCTGCCAGCCAAGGCGCTTCC................................................................................................................................................. 21 2 16 0.06 1 0 0 1 0
..............................................................................................................................................GGCAGGGTCCAGCCAGGTCGCC....................................................................................... 22 0 18 0.06 1 1 0 0 0
............................................................................................................................................................................................................GCATGCGCAGCGGTGTTCGC........................... 20 3 20 0.05 1 0 0 0 1
...................................................................................................................................TCCAGGTTAGGGGCAGGGTCC................................................................................................... 21 0 20 0.05 1 0 1 0 0
..................................................................................................TCGCTTCCTCCAGCAGCCAGC.................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
................................................................................................................................TCCTCCAGGTTAGGGGCAGGGTCC................................................................................................... 24 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

CCCGTCCCCACACGCGGAGGAGGTCATCGGTCGTTACAGTGGAGGAGGTCCAATCCCCGTCCCCGGTCGGTCCAGCGGAGGAGGTCGACGGTCGGTCCAGCGAAGGAGGTCGTCGGTCGGTCCAGCGGAGGAGGTCCAATCCCCGTCCCAGGTCGGTCCAGCGGAGGAGGTCGTCGGTCGGTCCAGCGGAGGAGGTCCAGTCTCCGTACCCGTCCCCACACGCGGAGGAGGTCATCGGTCGGTCCAGCGGA
***************************************************************************************..((..(((...((.(((.(((.....((((.....))))....)))..)))...)).)))..)).************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V055
head
 V106
head
.........................................................................................................................................................CGGTCCAGCGGAGGAGGTCGTC............................................................................ 22 0 20 1.50 30 30 0 0 0 0
...................................................................................................................GTCGGTCCAGCGGAGGAGGT.................................................................................................................... 20 0 20 0.45 9 0 9 0 0 0
.............................................................................................................................................................CCAGCGGAGGAGGTCGTC............................................................................ 18 0 20 0.40 8 8 0 0 0 0
..............................................................................................................CGTCGGTCGGTCCAGCGG........................................................................................................................... 18 0 20 0.30 6 6 0 0 0 0
.................................................................................................................................................................................TCGGTCCAGCGGAGGAGGTC...................................................... 20 0 20 0.25 5 5 0 0 0 0
......................................................................................................................................................................GAGGTCGTCGGTCGGTCCAG................................................................. 20 0 20 0.20 4 0 4 0 0 0
...............................................................................................................................................................................GGTCGGTCCAGCGGAGGAG......................................................... 19 0 20 0.20 4 0 4 0 0 0
.............................................................................................................................................CCCGTCCCAGGTCGGTCCAGC......................................................................................... 21 0 18 0.17 3 3 0 0 0 0
......................................................................................................AAGGAGGTCGTCGGTCGGTCC................................................................................................................................ 21 0 20 0.15 3 2 0 0 0 1
.....................................................................................................................................................AGGTCGGTCCAGCGGAGGAGGT................................................................................ 22 0 20 0.10 2 1 1 0 0 0
...................................................................................................................................................CCAGGTCGGTCCAGCGGAG..................................................................................... 19 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................GGTCCAATCCCCGTCCCAGGT.................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
..............................................................CCGGTCGGTCCAGCGGAGGAGGTCG.................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................CTCCGAACCCGTCCCCGCGC.............................. 20 3 20 0.05 1 0 0 1 0 0
...................................................................................................................................................CCAGGTCGGTCCAGCGGAGGA................................................................................... 21 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................CCGTCCCAGGTCGGTCTATC......................................................................................... 20 2 20 0.05 1 1 0 0 0 0
....................................................................................................CGAAGGAGGTCGTCGGTCGGTCC................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 1
..........CACGCGGAGGAGGTCATCGGT............................................................................................................................................................................................................................ 21 0 20 0.05 1 0 1 0 0 0
...............................................................................................................GTCGGTCGGTCCAGCGGAG......................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0
..............................TCGTAACAGTGAAGGAGGA.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0
.................................................................................................................................................CCCCAGGTCGGTCCAGCGGAG..................................................................................... 21 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................CCAGCGGAGGAGGTCCAGT.................................................. 19 0 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13150:34774-35024 - dan_2224 GGGCAGGGGTGTGCGCCTCCTCCAGTAGCCAGCAATGTCACCTCCTCCAGGTTAGGGGCAGGGGCCAGCCAGGTCGCCTCCTCCAGCTGCCAGCCAGGTCGCTTCCTCCAGCAGCCAGCCAGGTCGCCTCCTCCAGGTTAGGGGCAGGGTCCAGCCAGGTCGCCTCCTCCAGCAGCCAGCCAGGTCGCCTCCTCCAGGTCAGAGGCATGGGCAGGGGTGTGCGCCTCCTCCAGTAGCCAGCCAGGTCGCCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GGGCAGGGGTGTGCGCCTCCTCCAGTAGCCAGCAATGTCACCTCCTCCAGGTTAGGGGCAGGGGCCAGCCAGGTCGCCTCCTCCAGCTGCCAGCCAGGTCGCTTCCTCCAGCAGCCAGCCAGGTCGCCTCCTCCAGGTTAGGGGCAGGGTCCAGCCAGGTCGCCTCCTCCAGCAGCCAGCCAGGTCGCCTCCTCCAGGTCAGAGGCATGGGCAGGGGTGTGCGCCTCCTCCAGTAGCCAGCCAGGTCGCCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................GGCAGGGTCCAGCCAGGTCGCC.......................................................................................22180.061010000
...................................................................................................................................TCCAGGTTAGGGGCAGGGTCC...................................................................................................21200.051000001
..................................................................................................TCGCTTCCTCCAGCAGCCAGC....................................................................................................................................21200.051010000
................................................................................................................................TCCTCCAGGTTAGGGGCAGGGTCC...................................................................................................24200.051000001

Generated: 05/18/2015 at 01:48 AM