ID:

dan_2218

 Coordinate:

scaffold_13150:2259-2409 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-12.0

Flybase annnotation

exon [dana_GLEANR_20368:10]; CDS [Dana\GF18978-cds]; intron [Dana\GF18978-in]

No Repeatable elements found

mature
  1. scaffold_13150:864-883 -
  2. dan_2218  scaffold_13150:2326-2345 -
  3. scaffold_13150:6370-6389 -
  4. scaffold_13201:94081-94100 -
star
  1. scaffold_3084:277-298 -
  2. scaffold_4300:1306-1327 -
  3. scaffold_5771:617-638 -
  4. scaffold_5848:671-692 -
  5. scaffold_7519:638-659 -
  6. scaffold_8737:3264-3285 -
  7. scaffold_8737:4984-5005 -
  8. scaffold_9538:713-734 -
  9. scaffold_10382:1008-1029 -
  10. scaffold_10382:2390-2411 -
  11. scaffold_10382:3934-3955 -
  12. scaffold_10382:4521-4542 -
  13. scaffold_11457:860-881 -
  14. scaffold_12174:3711-3732 -
  15. scaffold_12174:7695-7716 -
  16. scaffold_12579:2817-2838 -
  17. scaffold_12579:4095-4116 -
  18. scaffold_12579:4747-4768 -
  19. dan_2218  scaffold_13150:2291-2312 -
  20. scaffold_13201:94046-94067 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCCAGGGGGTTGCGCCCCCTCCAGCAGCCGGCCAGGTCGACTCCTCCAGGTTAGGGGCAGCAGCCAGCCAGGTCACCTCCTCCAGCAGCCAGCCAGATCGTCCCCTCCAGGTTAGGAACAGAGGCCAGCCAGATCACCTCCTCCAGCAGCCGGCCAGGTCGCCTCCACAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
******************************************************************************************************************.((.......(((.(((.....................)))..))).....))..********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
..................................................................................................................AGGAACAGAGGCCAGCCAGA..................................................................................................................... 20 0 4 0.25 1 1
...................................................................................................................................................CAGCCGGCCAGGTCGCCTCCAC.................................................................................. 22 0 20 0.05 1 1

Anti-sense strand reads

CCGGTCCCCCAACGCGGGGGAGGTCGTCGGCCGGTCCAGCTGAGGAGGTCCAATCCCCGTCGTCGGTCGGTCCAGTGGAGGAGGTCGTCGGTCGGTCTAGCAGGGGAGGTCCAATCCTTGTCTCCGGTCGGTCTAGTGGAGGAGGTCGTCGGCCGGTCCAGCGGAGGTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
**********************************************************************************.((.......(((.(((.....................)))..))).....))..****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
........................................................CCGTCGTCGGTCGGTCCAGTG.............................................................................................................................................................................. 21 0 20 0.55 11 11 0 0
................................................................................................CTAGCAGGGGAGGTCCAATC....................................................................................................................................... 20 0 4 0.25 1 1 0 0
...........................................................................TGGAGGAGGTCGTCGGTCGGT........................................................................................................................................................... 21 0 20 0.10 2 0 0 2
........................CGTCGGCCGGTCCAGCTG................................................................................................................................................................................................................. 18 0 15 0.07 1 1 0 0
............................GGCCGGTCCAGCTGAGGAGG........................................................................................................................................................................................................... 20 0 19 0.05 1 0 1 0
........................................TGAGGAGGTCCAATCCCCGTC.............................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0
....................................................................................................................................CTAGTGGAGGAGGTCGTC..................................................................................................... 18 0 20 0.05 1 1 0 0
............................................................................................................................CGGTCGGTCTAGTGGAGGATG.......................................................................................................... 21 1 20 0.05 1 1 0 0
......................................................................................................................................................GGCCGGTCGAGCGGAGGTGTT................................................................................ 21 1 20 0.05 1 1 0 0
.........................................................................................................................................................CGGTCCAGTGGAGGTGTT................................................................................ 18 1 20 0.05 1 1 0 0
.............................................................................GAGGAGGTCGTCGGTCGGTCT......................................................................................................................................................... 21 0 20 0.05 1 1 0 0
..................................................................................................................................................CGTCGGCCGGTCCAGCGGAGGT................................................................................... 22 0 20 0.05 1 0 1 0
......................................................CCCCGTCGTCGGTCGGTCCAGTC.............................................................................................................................................................................. 23 1 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13150:2209-2459 - dan_2218 GGCCAGGGGGTTGCGCCCCCTCCAGCAGCCGGCCAGGTCGACTCCTCCAGGTTAGGGGCAGCAGCCAGCCAGGTCACCTCCTCCAGCAGCCAGCCAGATCGTCCCCTCCAGGTTAGGAACAGAGGCCAGCCAGATCACCTCCTCCAGCAGCCGGCCAGGTCGCCTCCACAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GGCCAGGGGGTTGCGCCCCCTCCAGCAGCCGGCCAGGTCGACTCCTCCAGGTTAGGGGCAGCAGCCAGCCAGGTCACCTCCTCCAGCAGCCAGCCAGATCGTCCCCTCCAGGTTAGGAACAGAGGCCAGCCAGATCACCTCCTCCAGCAGCCGGCCAGGTCGCCTCCACAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................AGGAACAGAGGCCAGCCAGA.....................................................................................................................2040.251010000
...................................................................................................................................................CAGCCGGCCAGGTCGCCTCCAC..................................................................................22200.051010000

Generated: 05/18/2015 at 01:47 AM