dan_2216

Name	Class	Family	Strand
Nobel_I-int	LTR	Pao	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATGTCCGATACTTCCACGAGTCGAATTTTCATGTGGGTCTACGAGCACAGGTGAGTCTCTTCCGACAGCGTGTTTGGATAGTAAACGCGCAGGAAGTCTGCAGTCAAATAGTACGGTCATGCATAAGCTGTTTTAAATGCAAGCCTCATCTGATGACTTAAATCATGGGAGATTTACCCTTAGATCGAATCCGTGCTCTCCGACCATTCTCCATATGTGGCGTGGATTTATGTGGCCCTATTGAAACGACG ************************************************.(((....(((((....(((((((((.....))))))))).))))).......)))...(((((((...(((((............))))).......(((.((((......)))).)))((((((....))))))....)))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V055 head	V106 head	V039 embryo
........................................................................................................................................................................................TCGAATCCGCTCACTCCGACCA.............................................	22	3	7	1.43	10	10	0	0	0	0
..................................................................................................................................................................................CTTAGATCGAATCCGTGCTCTCCGA................................................	25	0	2	0.50	1	1	0	0	0	0
..............................ATGTTGGTCTAAGACCACAGG........................................................................................................................................................................................................	21	3	2	0.50	1	0	0	1	0	0
........................................................................................................................................................................................TCGAAACCGTGCTCTGCTACCA.............................................	22	3	12	0.50	6	6	0	0	0	0
.........................................................................................................................................................................................CGAATCCTTGTACTCCGACCA.............................................	21	3	7	0.29	2	2	0	0	0	0
...........TTCCACGAGTCGAATTTTCATGTGGG......................................................................................................................................................................................................................	26	0	4	0.25	1	0	1	0	0	0
.......................AATTTTCATGTGGGTCTACGAGC.............................................................................................................................................................................................................	23	0	5	0.20	1	0	0	0	1	0
...................................................................................................................................................................................TTAGATCTAATCCGTCCTCTCCCA................................................	24	3	5	0.20	1	0	0	0	0	1
.......................................................................................................................TGCATAAGCTGTTTTAAATGCAAGCCC.........................................................................................................	27	1	6	0.17	1	0	1	0	0	0
................................GTGGGTCTAGGTGCACA..........................................................................................................................................................................................................	17	2	6	0.17	1	0	0	1	0	0
.........................................................................................................................................................................................CGAGTCCGGGCTCCCCGACCA.............................................	21	3	7	0.14	1	1	0	0	0	0
........................................................................................................................................................................................TCGAATCCTCGCACTCCGACCA.............................................	22	3	7	0.14	1	1	0	0	0	0
..........................................................................................................................................................................................GAATCCTTGCTCTGCTACCA.............................................	20	3	15	0.13	2	0	2	0	0	0
.......................................................................................................................................................................................ATCGAAACCGTGCTCTGCTACCA.............................................	23	3	8	0.13	1	0	1	0	0	0
........................................................................................................................................................................................TCGAAACCTTGCTCTCCTACCA.............................................	22	3	8	0.13	1	0	0	0	1	0
........................................................................................................................................................................................TCGAATCCTTGTACTCCGAC...............................................	20	3	10	0.10	1	0	1	0	0	0
.........................................................................TTGGATAGTACACGCGCAGGAAGT..........................................................................................................................................................	24	1	20	0.10	2	0	2	0	0	0
.........................................................................TTGGATAGTAAACGCGCAGGAAGTCTG.......................................................................................................................................................	27	0	20	0.10	2	0	2	0	0	0
...............................................................................................................................................................................ACCCTTAGATCGAATCCGTGCTCTCCG.................................................	27	0	20	0.05	1	1	0	0	0	0
.............................................................................................................................ATCTGGTTTCAATGCAAGC...........................................................................................................	19	3	20	0.05	1	0	0	0	0	1
.........................................................................TTGGATAGTAAACGCGCAGG..............................................................................................................................................................	20	0	20	0.05	1	1	0	0	0	0
..................................................................................................................................................CATTAGATGACTTAAATC.......................................................................................	18	2	20	0.05	1	0	0	0	1	0

TACAGGCTATGAAGGTGCTCAGCTTAAAAGTACACCCAGATGCTCGTGTCCACTCAGAGAAGGCTGTCGCACAAACCTATCATTTGCGCGTCCTTCAGACGTCAGTTTATCATGCCAGTACGTATTCGACAAAATTTACGTTCGGAGTAGACTACTGAATTTAGTACCCTCTAAATGGGAATCTAGCTTAGGCACGAGAGGCTGGTAAGAGGTATACACCGCACCTAAATACACCGGGATAACTTTGCTGC ************************************************.(((....(((((....(((((((((.....))))))))).))))).......)))...(((((((...(((((............))))).......(((.((((......)))).)))((((((....))))))....)))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V055 head	V106 head	V039 embryo	V105 male body
.................................................................................................................................CAAAATTTACGTTCGGAGTAGACTACT...............................................................................................	27	0	20	0.55	11	11	0	0	0	0	0
..........................................................GAAGGCTGTCGCACAAACCGACCAT........................................................................................................................................................................	25	2	2	0.50	1	0	0	1	0	0	0
.........................................................................................................................................................................................................CTGGTAAGAGGTATACACCG..............................	20	0	2	0.50	1	0	0	0	1	0	0
..................................................................................................................................................................................................CTAGAGGATGGTAAGAGGTATACACCG..............................	27	2	3	0.33	1	0	0	0	0	0	1
.........................................................AGAAGGCTGTCGCGCAAACCTATCAT........................................................................................................................................................................	26	1	20	0.25	5	0	5	0	0	0	0
..............GTGCTCAGCTTAAAAGTACACCCAGAT..................................................................................................................................................................................................................	27	0	4	0.25	1	1	0	0	0	0	0
........................................................................................CGTCCTTCAGACGTCAGTTTATC............................................................................................................................................	23	0	5	0.20	1	1	0	0	0	0	0
....................................................................................TGCGCGTCCTTCAGACGTCAGTTT...............................................................................................................................................	24	0	6	0.17	1	0	1	0	0	0	0
......................................................................................CGCGTCCTTCAGACGTCAGTTTAT.............................................................................................................................................	24	0	6	0.17	1	1	0	0	0	0	0
....................................................................................CGCGCGTCCTTCAGACGTCAGTTTAT.............................................................................................................................................	26	1	7	0.14	1	1	0	0	0	0	0
.........................................................AGAAGGTTGTAGCACAAACCTATCAT........................................................................................................................................................................	26	2	10	0.10	1	0	0	0	0	1	0
..................................................................................................................................................................AGTACCCTCTAAATGGGAATCTAGCTT..............................................................	27	0	20	0.10	2	0	0	0	0	1	1
.....................................................................................................................................................................ACCCTCTAAATGGGAATCTAGCT...............................................................	23	0	20	0.10	2	0	0	0	0	2	0
...................................................................................................................................................................GTACCCTCTAAATGGGAATCTAGCTT..............................................................	26	0	20	0.10	2	0	2	0	0	0	0
......................................................................................................................................................................CCCTCTAAATGGGAATCTAGCTT..............................................................	23	0	20	0.10	2	1	1	0	0	0	0
...............................................................................................................................................................................................CCACGAGAGGTTGGTAAGT.........................................	19	3	17	0.06	1	0	0	0	0	1	0
...................................................................................................................................AAATTTACGTTCGGAGTAGACTACT...............................................................................................	25	0	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................AATTTACGTTCGGAGTAGACTACT...............................................................................................	24	0	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................GGGAATCTAGCTTAGGCACGAGA....................................................	23	0	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................TAGTACCCTCTAAATGGGAATCTAGCTT..............................................................	28	0	20	0.05	1	0	1	0	0	0	0
....................................................................................................................AGCACGTAGTTGACAAAAT....................................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0
..............................................................GCTGTCGCACAAACCTATCAT........................................................................................................................................................................	21	0	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................GGTAAGATGTATACACCGCACCTA........................	24	1	20	0.05	1	0	0	0	0	1	0
..............................................................................ATCATTTGCGCGTCCTTCAGACGTCAG..................................................................................................................................................	27	0	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................GGTAAGAGGTATACACCGCACCT.........................	23	0	20	0.05	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13149:6033-6283 -	dan_2216	ATGTCCGATACTTCCACGAGTCGAATTTTCATGTGGGTCTACGAGCACAGGTGAGTCTCTTCCGACAGCGT----GTTTGGATAGTAAACGCGCAGGAAGTCTGCAGTCAAATAGTACGGTCATGCATAAGCTGTTTTAAATGCAAGCCTCATCTGATGACTTAAAT----CATGGGAGATTTACCCTTAGATCGAATCCGTGCTCTCCGACCATTC-TCCATATG------TGGCGTGGATTTATGTGGCCC-TATTGAAACGACG
droBip1	scf7180000394912:11320-11570 -		TCGTCCGATACTTGCACGAGTCGAATTTTCATGTGGGTCCACGAGCACTTGTGAGTCTTTTGCGACAGCGC----ATTTGGATCGTAAATGCGCAGGAAGTCTGCAGTCAGACAGTACGGTCATGCATACGCTGCTTTAAATGCAAGCCTCATCTGATGACTCAAAT----CATGGGTGATTTACCCTTAGATAGAATTCGTGCTCTCCGCCCATTC-TCCATATG------TGGTGTTGATTTTTGTGGCCC-TATTGATACGACA
droKik1	scf7180000301617:6891-7140 -		ACATCCGGCATCTGCACCATTTAAACTTTCATGTTGGCCCTCGAGCACTTGTGAGCATCCTACGACAGCGT----ATTTGGACTGTAAA-GCTCAGGAACTCTGCAGTCAGACAGTTCGGTTATGTGTGCGCTGCTTCAAATGCAAGCCCCGACTGATGACACAAAC----TATGGGAGATTTACCCGCAGATAGGCTCAGTGCTCTCCGCCCATTT-GCTATATG------TGGCGTCGATTTTTGTGGCCC-TGTCTATACGACA
droFic1	scf7180000454038:107-357 +		ATGTCCGGCATTTGCATCTAACCAATTTTCATGTCGGGCCACGAGCACTTGTGAGTCTCCTTCGACAGCGT----ATTTGGATCGTAAACGCTCAGGAGGTCTGCAGTCAAATAGTTCGATCATGTATTCGCTGCTTTAAATGCAAGCCTCGACTAATGACGCAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTCCGCCCATTT-AGTATCTG------TGGCGTTGATTTTTGTGGCCC-CGTCTATACGACA
droEle1	scf7180000490567:446-696 +		ATGTCCGGCATCTGCACTTTTCCAATTTTCATTTGGGTCCACGAGCACTCGTGGGTATCCTTCGACAGCGT----GTTTGGATCGTTAACGCTCAGAAGGTCTGTAGTCAAACAGTTCGATCATGTATACGCTGCTTTAAGTTCAAGCCTCGACTGATGACACAAAT----TATGGGAAATTTACCAGCAGACAGACTCCGTGCTCTTCGCCCATTT-GCAATATG------TGGCATTTATTTTTGTGGTCC-AGCTTATACGACA
droRho1	scf7180000779293:14437-14688 -		ATGTTCGGCATCTTCACCATTCCAATTTTCATGTTGGTCCACGAGCCCTTGTGAGTCTCCTTCGACAGCGT----ATTTGGATCGTAAACGCTCAGGAGGTCTGCAGTCAGATAGTTCGATCATGCATACGCTGCTTTAAGTGTAAGCCTCGACTAATGACACAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTCCGCCCATTTTGCTATATG------TGGCGTCGATTTTTGTGGCCC-TGTCTATACGACA
droBia1	scf7180000302519:175577-175833 -		ATGTCCGGCGTCTGCATAATTTAATTTTTTATGTTGGTACACGAGCACTTGTGAGTCTTCTTCGACAGCGT----GTTTTGATCGTAAATGCTCAGGAGGTCTGCTGTCAACGGGTTCGATCATGTGTACGCTGCTTCAAGTGTAAGCCTCGACTGATGACACAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTCCGCCCATTT-GCTATATGTTGATTTGGCGTCGATTTTTGTGGCTC-TGTTTATACAGAA
droTak1	scf7180000410961:1752-2002 +		ATGTCCGGCATCTGCACCATTCTAATTTTCATGTTGGTCCACGAGCACTTGTGAGTCTCCTTCGACAGCGA----ATTTGGATCGTAAACGCTCAGGAGGTCTGCAGTCAGACAGTTCGATCATGTATCCGCTGCTTCAAGTGCAAGCCTCGACTGATGACGCAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTCCGCCCATTT-GCTATATG------TGGCGTTGATTTTTGTGGCCC-TGTCTATACAACA
droEug1	scf7180000407658:21803-22053 +		ACGTGTCATACCTGCACGTTACGAATTGTCACGCTGGTCCTCGAGCTCTTGTACGTCTCCTGCACGAAAGA----GTATGGTTAGTCAATGCTCAAGAAGTATGTCGCCGAACTGTTCGTTCGTGCACGCGCTGCTTCCGGTGCAAGCCGCAACTCTTGACACAAGT----AATGGGGAACTTGTCATCAGACAGAATTCGAGCTCTCCGCCCTTTC-AATATCTG------CGGCGTTGATTTTTGTGGACC-ATTTATCACAACC
dm3	chrU:488901-489110 +		ACATCCGGCATATGCACCATTC-------------GGCCCACGAGCACGTGTGAGC----------ACCGT----ATTTGGTT------CGCTCAGGAACTTTGAAGTCAGACAGTTCGATTACGTGTGCGCTGTTCTAAATGCAAGCCTCGACTGATGGG-AAATC----TATGGGAAATCTACCCGCAGATAGACTCCTTCCTTACC-TTCATAT-GAAATATT------TGGCGGTAATTTTTGTGG-----------ACGACA
droSim2	node_41272:222-472 +		ACGTCCGGCATTTGCACCATTCCAATTTTCATGTCGGCCCTCGAGCACTTGTGAGCATCCTACGACAGCGT----ATTTGGACCGTAAACGCTCAGGAACTCTGCAGTCAGACAGTTCGATCATGTGTGCGCTGCTTCAAATGCAAGCCTCGACTGATGACACAAAT----TATGGGAAATCTACCCGCAGATAGACTCCGTGCTCTCCGCCCATTT-GCGATATG------TGGCGTTGATTTTTGTGGCCC-TGTCTATACGACA
droSec2	scaffold_111:15711-15948 -		AGTTTCGGCATCTGAACCATTCAAATTTTCATGTAAGCCCGCGAGCCCTTTTGAGCATCCTACGACAGCGT----ATTTGGATCGTAAACGCTTAGGAACTTTGCAGT---------CGATCATGTGTGCGCTGTGTTTAATTCAAGCCTCGACCGATGACACAAAT----TATGGGAAA----CCCGCAGATAGACTCCCTACTCTCCGCCCATTT-GCGATATG------TGGCTTTGATTTTTGTGGACC-TGTCTATACAACA
droYak3	v2_chrUn_1899:27158-27408 +		ACGTCCGGAATTTGCACCATTCCAATTTTCATGTCGGCCCTCGAGCACTTGTGAGCATCCTACGACAGCGT----ATTTGGATCGTAAACGCTCAGGAACTCTGCAGTCAGACAGTTCGATCATGTGTGCGCTGCTTTAAATGCAAGCCTCGACTGATGACACAAAT----TATGGGAAATCTATCCGCAGATAGACTCCGTGCTCTCCGCCCATTT-GCGATATG------TGGCGTTGATTTTTGTGGCCC-TGTCTATACGACA
droEre2	scaffold_4929:20842216-20842470 +		ACGTCCGGCATCTGCACTATTCAAACTTTCATGTCGGCCCTCGAGCACTTGCGAGCATTCTACGACAGCGTGGACATTTGGACATTAAACTCTCAGGTACTCTGCAGTCAGATAGTTCGATCTTGTGTCCGCTGCTTTAAAAGCAAGCCTCGACTAATGGCACAAAT----TATGGAAAATCTAACCGCAAATAGACTCCGTGCTCTCCGACCATTT-GCGATATG------TGGCGTGGATTTTTGTGGCCC-TGTCTACACGACA
dp5	Unknown_singleton_1820:827-1077 +		ATATTCGTCATCTGCACCATTCGAATTTTCATGTCGGCCCACGAGCACTTGTGAGCATCCTTCGACAGAGC----GTTTGGATAATGAACGCTCAGGAGGTCTGCCGTCAGACAGTTCGATCGTGTATGCGCTGTTTTAAATGCAAGCCTCGAATGCTGACGCAACT----CATGGGGAATTTACCCGCAGATCGACTCCGTGCTCTCCGCCCATTT-TCAATTTG------AGGCGTTGATTTTTGTGGACC-AGTGCACACGACA
droPer2	scaffold_2962:2657-2908 +		ATATTCGTCATCTGCACCATTCGAATTTTCATGTCGGCCCACGAGCACTTGTGAGCATCCTTCGACAGAGC----GTGTGGATAGTGAACGCTCAGGAGGTCTGCCGTCAGACAGTTCGATCATGTATGCGCTGTTTTAAATGCAAGCCTCGATTGCTGACGCAACT----CATGGGGAATTTACCCGCAGATCGACTCCGTGCTCTCCGCCCATTT-TCAATTTG------CGGCGTTGATTTTTGTGGACCATGTGCACACGACA
droWil2	scf2_1100000004961:4756649-4756903 +		ATGTCCGTCATCTCCATTTATCGAATTGTCATGTTGGCCCAAGAGCTTTAGTGAGCACCCTGCGTGAACAG----CTATGGGTTGTTAAAGCTTTAGAAGTCTTCCGTCAGACAGTGAGGTCTTGTGTATTATGTTTTAAATACAAGCCACCTCTTATGACGCAAATATGTAATGGGAAATTTTCCGGCAGACAGAGTTAGAGAGCTCCGCCCATTC-AGCATTTG------CGGCGTAGATTTTTGTGGTAC-AGTACACATAACA
droVir3	scaffold_12958:1679754-1680001 +		TTATTAGATACCCGCACTTGTAGGATTACCATTCTGGTCCAAGAGAAGTTGTGAGTCTTCTTCATTAGCGA----CTTTGGCTAATTAACGCTCAACAGGTCTGTCGTCAGGCAGTAAGAACATGCATCCGTT--TTTAAATGCAAACCTCATTTGCTAATTCAAAT----TATGA-AAATTAACCAGCAGGTCGACTCTGAGCGTTTCGCCCATTT-TCTATATC------TGGTGTCGATTTTTGTAGACC-AATTAGCACGACC
droMoj3	scaffold_6500:31248119-31248369 -		ATTTGGAGCATTTGCATCGCTCGCATTGCCACGAAAATCCACTAGTACTAATGGGCCTGCTTCGTCAGCAG----GTTTGGCTGGTAAATGCTCGAGAGGCTTGCAGTGCAGTAGTCCGAAAATGTGTACATTGTTTTCGCTACAAGCCGAAACTCTTATCCCAAAT----AATGGGCAATCTTCCCGCTGATCGCTTACATGGAAATAGGCCATTT-CAGATCAG------TGGAGTGGACTTTTGTGGTCT-AATATTAGTTTCG
droGri2	scaffold_8125:233-482 +		ATGTGCGGCTTCTACATCT-TCGCAACTGCATGCTGGACCTAAAGCTTTAGTGGCACTCATTCGATTGGAA----TATTGGATCGTAAACGCCAGAGACTTGGCACGTCGCATCGTGCGAACCTGCATGGCGTGTATTCGGTACAAGCCAAAATTGGAAAGGCAGCT----TACGGGATCGCTGCCAGTGGAGCGCCTTCGACCGGAACACCCATTC-CAACGCTG------TGGTATCGACTTCTGTGGGCC-AATAAATACGTAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

ATGTCCGATACTTCCACGAGTCGAATTTTCATGTGGGTCTACGAGCACAGGTGAGTCTCTTCCGACAGCGT----GTTTGGATAGTAAACGCGCAGGAAGTCTGCAGTCAAATAGTACGGTCATGCATAAGCTGTTTTAAATGCAAGCCTCATCTGATGACTTAAAT----CATGGGAGATTTACCCTTAGATCGAATCCGTGCTCTCCGACCATTC-TCCATATG------TGGCGTGGATTTATGTGGCCC-TATTGAAACGACG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................................CTTAGATCGAATCCGTGCTCTCCGA........................................................	25	2	0.50	1	1	0	0	0	0	0
...........TTCCACGAGTCGAATTTTCATGTGGG......................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0
.......................AATTTTCATGTGGGTCTACGAGC.............................................................................................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	1
...........................................................................................................................TGCATAAGCTGTTTTAAATGCAAGCCC.....................................................................................................................	27	6	0.17	1	0	1	0	0	0	0
.............................................................................TTGGATAGTAAACGCGCAGGAAGTCTG...................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0
.......................................................................................................................................................................................ACCCTTAGATCGAATCCGTGCTCTCCG.........................................................	27	20	0.05	1	1	0	0	0	0	0
.............................................................................TTGGATAGTAAACGCGCAGG..........................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0

droBip1

TCGTCCGATACTTGCACGAGTCGAATTTTCATGTGGGTCCACGAGCACTTGTGAGTCTTTTGCGACAGCGC----ATTTGGATCGTAAATGCGCAGGAAGTCTGCAGTCAGACAGTACGGTCATGCATACGCTGCTTTAAATGCAAGCCTCATCTGATGACTCAAAT----CATGGGTGATTTACCCTTAGATAGAATTCGTGCTCTCCGCCCATTC-TCCATATG------TGGTGTTGATTTTTGTGGCCC-TATTGATACGACA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACATCCGGCATCTGCACCATTTAAACTTTCATGTTGGCCCTCGAGCACTTGTGAGCATCCTACGACAGCGT----ATTTGGACTGTAAA-GCTCAGGAACTCTGCAGTCAGACAGTTCGGTTATGTGTGCGCTGCTTCAAATGCAAGCCCCGACTGATGACACAAAC----TATGGGAGATTTACCCGCAGATAGGCTCAGTGCTCTCCGCCCATTT-GCTATATG------TGGCGTCGATTTTTGTGGCCC-TGTCTATACGACA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATGTCCGGCATTTGCATCTAACCAATTTTCATGTCGGGCCACGAGCACTTGTGAGTCTCCTTCGACAGCGT----ATTTGGATCGTAAACGCTCAGGAGGTCTGCAGTCAAATAGTTCGATCATGTATTCGCTGCTTTAAATGCAAGCCTCGACTAATGACGCAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTCCGCCCATTT-AGTATCTG------TGGCGTTGATTTTTGTGGCCC-CGTCTATACGACA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATGTCCGGCATCTGCACTTTTCCAATTTTCATTTGGGTCCACGAGCACTCGTGGGTATCCTTCGACAGCGT----GTTTGGATCGTTAACGCTCAGAAGGTCTGTAGTCAAACAGTTCGATCATGTATACGCTGCTTTAAGTTCAAGCCTCGACTGATGACACAAAT----TATGGGAAATTTACCAGCAGACAGACTCCGTGCTCTTCGCCCATTT-GCAATATG------TGGCATTTATTTTTGTGGTCC-AGCTTATACGACA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATGTTCGGCATCTTCACCATTCCAATTTTCATGTTGGTCCACGAGCCCTTGTGAGTCTCCTTCGACAGCGT----ATTTGGATCGTAAACGCTCAGGAGGTCTGCAGTCAGATAGTTCGATCATGCATACGCTGCTTTAAGTGTAAGCCTCGACTAATGACACAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTCCGCCCATTTTGCTATATG------TGGCGTCGATTTTTGTGGCCC-TGTCTATACGACA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGTCCGGCGTCTGCATAATTTAATTTTTTATGTTGGTACACGAGCACTTGTGAGTCTTCTTCGACAGCGT----GTTTTGATCGTAAATGCTCAGGAGGTCTGCTGTCAACGGGTTCGATCATGTGTACGCTGCTTCAAGTGTAAGCCTCGACTGATGACACAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTCCGCCCATTT-GCTATATGTTGATTTGGCGTCGATTTTTGTGGCTC-TGTTTATACAGAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGTCCGGCATCTGCACCATTCTAATTTTCATGTTGGTCCACGAGCACTTGTGAGTCTCCTTCGACAGCGA----ATTTGGATCGTAAACGCTCAGGAGGTCTGCAGTCAGACAGTTCGATCATGTATCCGCTGCTTCAAGTGCAAGCCTCGACTGATGACGCAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCGTGCTCTCCGCCCATTT-GCTATATG------TGGCGTTGATTTTTGTGGCCC-TGTCTATACAACA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACGTGTCATACCTGCACGTTACGAATTGTCACGCTGGTCCTCGAGCTCTTGTACGTCTCCTGCACGAAAGA----GTATGGTTAGTCAATGCTCAAGAAGTATGTCGCCGAACTGTTCGTTCGTGCACGCGCTGCTTCCGGTGCAAGCCGCAACTCTTGACACAAGT----AATGGGGAACTTGTCATCAGACAGAATTCGAGCTCTCCGCCCTTTC-AATATCTG------CGGCGTTGATTTTTGTGGACC-ATTTATCACAACC	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACATCCGGCATATGCACCATTC-------------GGCCCACGAGCACGTGTGAGC----------ACCGT----ATTTGGTT------CGCTCAGGAACTTTGAAGTCAGACAGTTCGATTACGTGTGCGCTGTTCTAAATGCAAGCCTCGACTGATGGG-AAATC----TATGGGAAATCTACCCGCAGATAGACTCCTTCCTTACC-TTCATAT-GAAATATT------TGGCGGTAATTTTTGTGG-----------ACGACA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................TGCAAGCCTCGACTGATGGG-AAATC----................................................................................................	25	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................GCTCAGGAACTTTGAAGTCAGACAGT.......................................................................................................................................................	26	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	3	3	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TCAGGAACTTTGAAGTCAGACAGT.......................................................................................................................................................	24	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	2	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GACTGATGGG-AAATC----TATGGGAAATC.....................................................................................	26	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	7	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................CTAAATGCAAGCCTCGACTGATGGG-A........................................................................................................	26	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................GAAGTCAGACAGTTCGATTACGTGTGC.........................................................................................................................................	27	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TAAATGCAAGCCTCGACTGATGGG-AAA......................................................................................................	27	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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....................................................................................................................TCGATTACGTGTGCGCTGTTCTAA...............................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................ATTACGTGTGCGCTGTTCTAAATGC...........................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CGACTGATGGG-AAATC----TATGGGAAA.......................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................ACGTGTGCGCTGTTCTAAATG............................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CTCGACTGATGGG-AAATC----TAT.............................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GACTGATGGG-AAATC----TATGGG..........................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TCATAT-GAAATATT------TGGCGGT............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................ACCCGCAGATAGACTCCTTCG...............................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACGTCCGGCATTTGCACCATTCCAATTTTCATGTCGGCCCTCGAGCACTTGTGAGCATCCTACGACAGCGT----ATTTGGACCGTAAACGCTCAGGAACTCTGCAGTCAGACAGTTCGATCATGTGTGCGCTGCTTCAAATGCAAGCCTCGACTGATGACACAAAT----TATGGGAAATCTACCCGCAGATAGACTCCGTGCTCTCCGCCCATTT-GCGATATG------TGGCGTTGATTTTTGTGGCCC-TGTCTATACGACA

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

AGTTTCGGCATCTGAACCATTCAAATTTTCATGTAAGCCCGCGAGCCCTTTTGAGCATCCTACGACAGCGT----ATTTGGATCGTAAACGCTTAGGAACTTTGCAGT---------CGATCATGTGTGCGCTGTGTTTAATTCAAGCCTCGACCGATGACACAAAT----TATGGGAAA----CCCGCAGATAGACTCCCTACTCTCCGCCCATTT-GCGATATG------TGGCTTTGATTTTTGTGGACC-TGTCTATACAACA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................TAATTCAAGCCTCGACCGATG............................................................................................................	21	1	1.00	1	1	0	0	0
................................................................................................................................................................................................TAGACTCCCTACTCTCCGCC.......................................................	20	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................ATATG------TGGCTTTGATTTTTGT...................	21	1	1.00	1	0	0	1	0
............................................................TACGACAGCGT----ATTTGGATCG......................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...........................................................................................................................TGTGTGCGCTGTGTTTAATTC...........................................................................................................................	21	1	1.00	1	0	0	1	0
.........................TTTTCATGTAAGCCCGCGAGC.............................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.......GCATCTGAACCATTCAAATTT...............................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..........................TTTCATGTAAGCCCGCGAGCC............................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0

droYak3

ACGTCCGGAATTTGCACCATTCCAATTTTCATGTCGGCCCTCGAGCACTTGTGAGCATCCTACGACAGCGT----ATTTGGATCGTAAACGCTCAGGAACTCTGCAGTCAGACAGTTCGATCATGTGTGCGCTGCTTTAAATGCAAGCCTCGACTGATGACACAAAT----TATGGGAAATCTATCCGCAGATAGACTCCGTGCTCTCCGCCCATTT-GCGATATG------TGGCGTTGATTTTTGTGGCCC-TGTCTATACGACA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................CAGTCAGACAGTTCGATCATGTGTG..........................................................................................................................................	25	20	1.05	21	0	19	0	0	0	0	2	0	0	0	0
........................................................................................................CAGTCAGACAGTTCGATCATGTGT...........................................................................................................................................	24	20	0.45	9	0	6	0	0	0	0	3	0	0	0	0
........................................................................................................CAGTCAGACAGTTCGATCATGTG............................................................................................................................................	23	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0
........................................................................................................CAGTCAGACAGTTCGA...................................................................................................................................................	16	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5
......................................................................................................................................................CGACTGATGACACAAAT----TATGGGA.........................................................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
.........................................................................................................AGTCAGACAGTTCGATCATGTGTG..........................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................G------TGGCGTTGATTTTTGTGGCCC-.............	22	20	0.15	3	0	1	2	0	0	0	0	0	0	0	0
.................CATTCCAATTTTCATGTCGGCCC...................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
................................................TTGTGAGCATCCTACGACAGCGT----ATT.............................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CGACTGATGACACAAAT----TATGGGAAATC.....................................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CGACTGATGACACAAAT----TATGGGAA........................................................................................	25	20	0.10	2	1	1	0	0	0	0	0	0	0	0	0
.................CATTCCAATTTTCATGTCGGCCCT..................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.................CATTCCAATTTTCATGTCGGCCCTCG................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.................CATTCCAATTTTCATGTCGGCCCTC.................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................G------TGGCGTTGATTTTTGTGGCCC-TGTCTA.......	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GACTGATGACACAAAT----TATGGGAAA.......................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CGATATG------TGGCGTTGATTTTTGTG..................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
................CCATTCCAATTTTCATGTCGGCCC...................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............ACCATTCCAATTTTCATGTCGGCCC...................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TCCGTGCTCTCCGCCCATTT-GCGATAT..........................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGATTTTTGTGGCCC-TGTCTATACGA..	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................GTGAGCATCCTACGACAGCGT----ATT.............................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................GTCAGACAGTTCGATCATGTGTG..........................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CGACTGATGACACAAAT----TATGGGC.........................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................CAGTCAGACAGTTCGATCATGT.............................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................G------TGGCGTTGATTTTTGTGGCCC-TGTCT........	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................GAGCATCCTACGACAGCGT----ATTTG...........................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CGCAGATAGACTCCGTGCTCTCC..........................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGATTTTTGTGGCCC-TGTCTATACGAC.	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CGACTGATGACACAAAT----TATGGG..........................................................................................	23	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
...............................................CTTGTGAGCATCCTACGACAGCGT----................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................TCAGACAGTTCGATCATGTGTGCGC.......................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................TCGAGCACTTGTGAGCATCCTACGAC.........................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................AGCACTTGTGAGCATCCTACGACAGCGC----................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................CATTCCAATTTTCATGTCGGCCCTCGAGC.............................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GCAGATAGACTCCGTGCTCTCCGCC.......................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGCTCTCCGCCCATTT-GCGATATG------TGG................................	27	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
.......................AATTTTCATGTCGGCCCTCGA...............................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TAGACTCCGTGCTCTCCGCCCATT...................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CGCAGATAGACTCCGTGCTCTCCG.........................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................CATTCCAATTTTCATGTCGGCCCTCGA...............................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TCCGTGCTCTCCGCCCATTT-GC...............................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................GCACTTGTGAGCATCCTACGACAG.......................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................G------TGGCGTTGATTTTTGTGGCCC-TG...........	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

ACGTCCGGCATCTGCACTATTCAAACTTTCATGTCGGCCCTCGAGCACTTGCGAGCATTCTACGACAGCGTGGACATTTGGACATTAAACTCTCAGGTACTCTGCAGTCAGATAGTTCGATCTTGTGTCCGCTGCTTTAAAAGCAAGCCTCGACTAATGGCACAAAT----TATGGAAAATCTAACCGCAAATAGACTCCGTGCTCTCCGACCATTT-GCGATATG------TGGCGTGGATTTTTGTGGCCC-TGTCTACACGACA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dp5

ATATTCGTCATCTGCACCATTCGAATTTTCATGTCGGCCCACGAGCACTTGTGAGCATCCTTCGACAGAGC----GTTTGGATAATGAACGCTCAGGAGGTCTGCCGTCAGACAGTTCGATCGTGTATGCGCTGTTTTAAATGCAAGCCTCGAATGCTGACGCAACT----CATGGGGAATTTACCCGCAGATCGACTCCGTGCTCTCCGCCCATTT-TCAATTTG------AGGCGTTGATTTTTGTGGACC-AGTGCACACGACA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................TTTCATGTCGGCCCACGAGCACTTG........................................................................................................................................................................................................................	25	9	48.33	435	0	381	0	0	2	0	6	36	10	0
..........................TTTCATGTCGGCCCACGAGCACTT.........................................................................................................................................................................................................................	24	9	8.33	75	0	45	1	0	1	0	2	21	5	0
..........................TTTCATGTCGGCCCACGAGCACT..........................................................................................................................................................................................................................	23	9	7.44	67	0	54	2	1	2	0	0	6	2	0
...........................TTCATGTCGGCCCACGAGCACTTG........................................................................................................................................................................................................................	24	9	4.78	43	0	43	0	0	0	0	0	0	0	0
..........................TTTCATGTCGGCCCACGAGCAC...........................................................................................................................................................................................................................	22	10	4.40	44	0	37	2	0	0	0	0	5	0	0
..........................................................................................................................................AAATGCAAGCCTCGAATGCTGACG.........................................................................................................	24	2	3.50	7	0	7	0	0	0	0	0	0	0	0
..........................TTTCATGTCGGCCCACGAGCA............................................................................................................................................................................................................................	21	10	2.00	20	0	14	0	0	2	0	2	1	1	0
..........................................................................................................................................AAATGCAAGCCTCGAATGCTGACGC........................................................................................................	25	2	2.00	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GCAGATCGACTCCGTGCTCTCCGC........................................................	24	7	2.00	14	0	12	2	0	0	0	0	0	0	0
.............................................................................TTGGATAATGAACGCTCAGGAGGTC.....................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0
.............................................................................................................................................................................TGGGGAATTTACCCGCAGATCGACT.....................................................................	25	10	1.90	19	0	17	0	0	0	0	0	1	1	0
......................................................................................................................................................................................TACCCGCAGATCGACTCCGTGCTC.............................................................	24	8	1.88	15	1	12	2	0	0	0	0	0	0	0
ATATTCGTCATCTGCACCATTCG....................................................................................................................................................................................................................................................	23	12	1.83	22	0	14	0	0	0	0	0	6	2	0
ATATTCGTCATCTGCACCATTCGA...................................................................................................................................................................................................................................................	24	12	1.75	21	0	13	0	0	0	0	0	3	5	0
.........................TTTTCATGTCGGCCCACGAGCACTTG........................................................................................................................................................................................................................	26	9	1.44	13	0	13	0	0	0	0	0	0	0	0
..........................TTTCATGTCGGCCCACGAGCACTTGTG......................................................................................................................................................................................................................	27	9	1.44	13	0	10	0	0	0	0	3	0	0	0
...........................................................................................................................................................................................GCAGATCGACTCCGTGCTCTCCGCC.......................................................	25	7	1.43	10	0	8	0	0	0	0	0	0	2	0
...........................................................................................................................................................................................GCAGATCGACTCCGTGCTCTCCGCCCA.....................................................	27	7	1.43	10	0	9	0	0	0	0	0	0	1	0
......................................................................................................................................................................................TACCCGCAGATCGACTCCGTGCTCT............................................................	25	8	1.38	11	0	9	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................CGCAGATCGACTCCGTGCTCTCCG.........................................................	24	8	1.38	11	0	9	0	0	0	0	0	2	0	0
......................................................................................................................................................................................TACCCGCAGATCGACTCCGTGCT..............................................................	23	8	1.25	10	0	8	1	0	0	0	1	0	0	0
.............................................................................................................................................................................TGGGGAATTTACCCGCAGATCGACTC....................................................................	26	9	1.22	11	0	11	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GCAGATCGACTCCGTGCTCTCCG.........................................................	23	8	1.13	9	0	9	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TACCCGCAGATCGACTCCGTGCTCTC...........................................................	26	8	1.13	9	0	7	1	0	1	0	0	0	0	0
.............................................................................................................................................................................TGGGGAATTTACCCGCAGATCGACTCCG..................................................................	28	9	1.11	10	0	9	0	0	0	0	1	0	0	0
.............................................................................................................................................................................TGGGGAATTTACCCGCAGATCGACTCC...................................................................	27	9	1.00	9	0	8	1	0	0	0	0	0	0	0
..................................................................................TAATGAACGCTCAGGAGGTCTGCCG................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................TTCGACAGAGC----GTTTGGATAATGAACGC...............................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................CGACAGAGC----GTTTGGATAATGAACG................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TCCGTGCTCTCCGCCCATTT-TCAATT...........................................	26	8	1.00	8	0	7	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ATTT-TCAATTTG------AGGCGTTGATT........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................CTTCGACAGAGC----GTTTGGATAATG....................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................TGGATAATGAACGCTCAGGAGGTCTGC..................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................TCCTTCGACAGAGC----GTTTGGATAA......................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................T-TCAATTTG------AGGCGTTGATTTTTG....................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TTG------AGGCGTTGATTTTTGTGGAC...............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TACCCGCAGATCGACTCCGTGC...............................................................	22	10	0.90	9	0	7	1	0	0	0	1	0	0	0
..........................TTTCATGTCGGCCCACGAGCACTTGTGA.....................................................................................................................................................................................................................	28	9	0.89	8	0	8	0	0	0	0	0	0	0	0
..........................TTTCATGTCGGCCCACGAGCACTTGT.......................................................................................................................................................................................................................	26	9	0.89	8	0	3	0	0	0	0	1	4	0	0
...........................................................................................................................................................................................GCAGATCGACTCCGTGCTCTCC..........................................................	22	8	0.88	7	0	7	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CGCAGATCGACTCCGTGCTCTCCGC........................................................	25	7	0.86	6	0	5	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................GCAGATCGACTCCGTGCTCTCCGCCC......................................................	26	7	0.86	6	0	6	0	0	0	0	0	0	0	0
ATATTCGTCATCTGCACCATTCGAAT.................................................................................................................................................................................................................................................	26	12	0.83	10	0	8	1	0	0	0	0	0	1	0
ATATTCGTCATCTGCACCATTCGAA..................................................................................................................................................................................................................................................	25	12	0.83	10	0	7	0	0	0	0	0	0	3	0
..........................TTTCATGTCGGCCCACGAGC.............................................................................................................................................................................................................................	20	10	0.80	8	0	6	1	0	0	0	1	0	0	0
.......................................................CATCCTTCGACAGAGC----GTTTGG..........................................................................................................................................................................................	22	9	0.78	7	0	7	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CGCAGATCGACTCCGTGCTCTCC..........................................................	23	8	0.75	6	0	6	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TACCCGCAGATCGACTCCGTG................................................................	21	10	0.70	7	0	7	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GGGGAATTTACCCGCAGATCGACTCCG..................................................................	27	9	0.67	6	0	5	0	0	0	0	0	1	0	0
..........................TTTCATGTCGGCCCACGAGCACTTC........................................................................................................................................................................................................................	25	9	0.67	6	0	3	0	0	0	0	0	3	0	0
...........................TTCATGTCGGCCCACGAGCAC...........................................................................................................................................................................................................................	21	10	0.60	6	0	6	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAACT----CATGGGGAATTTACCCGC..............................................................................	23	10	0.60	6	0	3	0	0	0	0	0	3	0	0
.................................................................................................................................................................................................CGACTCCGTGCTCTCCGCCCATTT-.................................................	24	7	0.57	4	0	0	0	0	0	0	0	0	4	0
..........................................................................................................................................................TGCTGACGCAACT----CATGGGGAATT.....................................................................................	24	9	0.56	5	0	5	0	0	0	0	0	0	0	0
..........................................................................................................................................AAATGCAAGCCTCGAATGCTGACGT........................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
ATATTCGTCATCTGCACCATTCGAATTT...............................................................................................................................................................................................................................................	28	12	0.50	6	0	3	0	0	0	0	0	0	3	0
...........................................................................................................................................AATGCAAGCCTCGAATGCTGACGC........................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CGCAGATCGACTCCGTGCTCTC...........................................................	22	8	0.50	4	0	3	0	0	0	0	1	0	0	0
..........................................................................................................................................AAATGCAAGCCTCGAATGCTGAC..........................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TG------AGGCGTTGATTTTTGTGG.................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.TATTCGTCATCTGCACCATTCG....................................................................................................................................................................................................................................................	22	12	0.50	6	0	6	0	0	0	0	0	0	0	0
......................................................GCATCCTTCGACAGAGC----GTTTGGA.........................................................................................................................................................................................	24	8	0.50	4	0	3	0	0	0	0	1	0	0	0
............................TCATGTCGGCCCACGAGCACTT.........................................................................................................................................................................................................................	22	10	0.50	5	0	4	0	0	0	0	0	0	1	0
..........................................................................................................................................AAATGCAAGCCTCGAATGCTGACGCA.......................................................................................................	26	2	0.50	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................TGATTTTTGTGGACC-AGTG.........	19	9	0.44	4	0	1	0	0	0	0	0	0	3	0
..........................................................................................................................................................................................CGCAGATCGACTCCGTGCTCTCCGCC.......................................................	26	7	0.43	3	0	3	0	0	0	0	0	0	0	0
............................................................................................TCAGGAGGTCTGCCGTCAGACA.........................................................................................................................................................	22	12	0.42	5	0	3	0	0	1	0	1	0	0	0
ATATTCGTCATCTGCACCATTC.....................................................................................................................................................................................................................................................	22	12	0.42	5	0	5	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GGGGAATTTACCCGCAGATCGACT.....................................................................	24	10	0.40	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................TCAGACAGTTCGATCGTGTATGCGCT......................................................................................................................................	26	10	0.40	4	0	2	0	0	0	0	2	0	0	0
...................................................TGAGCATCCTTCGACAGAG.....................................................................................................................................................................................................	19	13	0.38	5	0	5	0	0	0	0	0	0	0	0
......................................................................................................TGCCGTCAGACAGTTCGATCGTGTA............................................................................................................................................	25	8	0.38	3	0	0	0	0	0	0	2	0	1	0
..........................TTTCATGTCGGCCCACGAG..............................................................................................................................................................................................................................	19	11	0.36	4	0	4	0	0	0	0	0	0	0	0
........................................................ATCCTTCGACAGAGC----GTTTGG..........................................................................................................................................................................................	21	9	0.33	3	0	0	0	0	0	0	0	3	0	0
...............................................................................................................................................................ACGCAACT----CATGGGGAATTTACC.................................................................................	23	9	0.33	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GGGGAATTTACCCGCAGATCGACTCC...................................................................	26	9	0.33	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TTTACCCGCAGATCGACTCCGTGC...............................................................	24	9	0.33	3	0	1	2	0	0	0	0	0	0	0
.........................TTTTCATGTCGGCCCACGAGCACT..........................................................................................................................................................................................................................	24	9	0.33	3	0	2	0	0	0	0	1	0	0	0
......................................................................................................................................................................................TACCCGCAGATCGACTCCGT.................................................................	20	10	0.30	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TACCCGCAGATCGACTCCGTGCTA.............................................................	24	10	0.30	3	0	3	0	0	0	0	0	0	0	0
............................TCATGTCGGCCCACGAGCACTTG........................................................................................................................................................................................................................	23	10	0.30	3	0	2	0	0	0	0	0	0	1	0
....................................................................................................TCTGCCGTCAGACAGTTCGATCC................................................................................................................................................	23	10	0.30	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CGCAGATCGACTCCGTGCTCTCCGCCCA.....................................................	28	7	0.29	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TTTACCCGCAGATCGACTCCGTGCTC.............................................................	26	7	0.29	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GATCGACTCCGTGCTCTCCGCCCAT....................................................	25	7	0.29	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CGCAGATCGACTCCGTGCTCTCCGCCC......................................................	27	7	0.29	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GATCGACTCCGTGCTCTCCGCCC......................................................	23	7	0.29	2	0	1	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................GATCGACTCCGTGCTCTCCGCCCATTT-.................................................	27	7	0.29	2	0	2	0	0	0	0	0	0	0	0
......................................................GCATCCTTCGACAGAGC----GTTTGG..........................................................................................................................................................................................	23	8	0.25	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CCCGCAGATCGACTCCGTGCTCTC...........................................................	24	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................TGTATGCGCTGTTTTAAATGCAAGCC......................................................................................................................	26	12	0.25	3	0	0	0	0	0	0	0	3	0	0
...................................................TGAGCATCCTTCGACAGAGC----G...............................................................................................................................................................................................	21	12	0.25	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CCGCAGATCGACTCCGTGCTCTCC..........................................................	24	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...................................................TGAGCATCCTTCGACAGAGC----GTTTGG..........................................................................................................................................................................................	26	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.......................................................CATCCTTCGACAGAGC----GTTTGGAT........................................................................................................................................................................................	24	8	0.25	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................TGCCGTCAGACAGTTCGATCGTG..............................................................................................................................................	23	8	0.25	2	0	1	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................CCGCAGATCGACTCCGTGCTCTCCG.........................................................	25	8	0.25	2	0	1	0	0	0	0	0	1	0	0
....................................................................................................TCTGCCGTCAGACAGTT......................................................................................................................................................	17	12	0.25	3	0	0	0	0	0	0	0	3	0	0
....................................................................................................TCTGCCGTCAGACAGTTCGATCGTGT.............................................................................................................................................	26	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTGATTTTTGTGGACC-AGT..........	19	9	0.22	2	0	0	0	0	0	0	0	0	2	0
...........................TTCATGTCGGCCCACGAGCACTTGTG......................................................................................................................................................................................................................	26	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTACCCGCAGATCGACTCCGTGC...............................................................	23	9	0.22	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TTTACCCGCAGATCGACTCCGTG................................................................	23	9	0.22	2	0	2	0	0	0	0	0	0	0	0
...........................TTCATGTCGGCCCACGAGCACTTGTGA.....................................................................................................................................................................................................................	27	9	0.22	2	0	1	0	0	0	0	0	0	1	0
...........................TTCATGTCGGCCCACGAGCACT..........................................................................................................................................................................................................................	22	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.........................TTTTCATGTCGGCCCACGAGCACTT.........................................................................................................................................................................................................................	25	9	0.22	2	0	0	0	0	0	0	0	2	0	0
...........................TTCATGTCGGCCCACGAGCACTT.........................................................................................................................................................................................................................	23	9	0.22	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ATTTACCCGCAGATCGACTCCGTGC...............................................................	25	9	0.22	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................GCTGACGCAACT----CATGGGGAATT.....................................................................................	23	9	0.22	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAACT----CATGGGGAATTTACCCGCAGA...........................................................................	26	10	0.20	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................TCAGACAGTTCGATCGTGTATGCG........................................................................................................................................	24	10	0.20	2	0	1	0	0	0	0	1	0	0	0
............................TCATGTCGGCCCACGAGCACTTGTGA.....................................................................................................................................................................................................................	26	10	0.20	2	0	0	0	0	0	0	0	2	0	0
.....................................................................................TGAACGCTCAGGAGGTCTGCCGT...............................................................................................................................................................	23	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TGGGGAATTTACCCGCAGATCGAC......................................................................	24	10	0.20	2	0	1	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................ACCCGCAGATCGACTCCGTG................................................................	20	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................TGAACGCTCAGGAGGTCTGCCG................................................................................................................................................................	22	10	0.20	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TACCCGCAGATCGACTCCG..................................................................	19	10	0.20	2	0	2	0	0	0	0	0	0	0	0
............................TCATGTCGGCCCACGAGCACT..........................................................................................................................................................................................................................	21	10	0.20	2	0	2	0	0	0	0	0	0	0	0
...........................TTCATGTCGGCCCACGAGCA............................................................................................................................................................................................................................	20	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................TGAACGCTCAGGAGGTCTGCCGTC..............................................................................................................................................................	24	10	0.20	2	0	2	0	0	0	0	0	0	0	0
............................................................................................TCAGGAGGTCTGCCGTCAGACAGT.......................................................................................................................................................	24	10	0.20	2	0	2	0	0	0	0	0	0	0	0
........................................................................................ACGCTCAGGAGGTCTGCCG................................................................................................................................................................	19	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................CGCTCAGGAGGTCTGCCGTCAG............................................................................................................................................................	22	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.TATTCGTCATCTGCACCATTCGA...................................................................................................................................................................................................................................................	23	12	0.17	2	0	2	0	0	0	0	0	0	0	0
............................................................................................TCAGGAGGTCTGCCGTCAGAC..........................................................................................................................................................	21	12	0.17	2	0	1	0	0	0	0	1	0	0	0
......................................................................................................TGCCGTCAGACAGTT......................................................................................................................................................	15	12	0.17	2	0	0	0	0	0	0	0	2	0	0
...............................................................................................................................TGCGCTGTTTTAAATGCAAGC.......................................................................................................................	21	13	0.15	2	0	0	0	0	0	0	0	2	0	0
...............ACCATTCGAATTTTCATGTCGG......................................................................................................................................................................................................................................	22	13	0.15	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CAGATCGACTCCGTGCTCTCCGC........................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CCCGCAGATCGACTCCGTGCTCTCCGC........................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ACTCCGTGCTCTCCGCCCATTT-T................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TCGACTCCGTGCTCTCCGCCCA.....................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTACCCGCAGATCGACTCCGTGCT..............................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TTTTTGTGGACC-AGTGCACACGACA	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TCGACTCCGTGCTCTCCGCCCATT...................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GATTTTTGTGGACC-AGTGCACACG...	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TCGACTCCGTGCTCTCCGCCCATTT-.................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TCGACTCCGTGCTCTCCGCCC......................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................................................................................TCAGGAGGTCTGCCGTCAGACAGTTC.....................................................................................................................................................	26	7	0.14	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................TGATTTTTGTGGACC-AGTGCACACGA..	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTACCCGCAGATCGACTCCGTGCTC.............................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GATCGACTCCGTGCTCTCCGCCCATT...................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CAGATCGACTCCGTGCTCTCCGCCCA.....................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CCGCAGATCGACTCCGTGCTCTCCGC........................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GACTCCGTGCTCTCCGCCCATT...................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CAGATCGACTCCGTGCTCTCCGCCC......................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................TGTATGCGCTGTTTTAAATG............................................................................................................................	20	15	0.13	2	0	0	0	0	0	0	1	1	0	0
..............................................................................................................................................................................................................................................TGATTTTTGTGGACC-AGTGC........	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................TCGAATTTTCATGTCGGCCCACGAGCACT..........................................................................................................................................................................................................................	29	8	0.13	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................ACCCGCAGATCGACTCCGTGCTC.............................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...................................................TGAGCATCCTTCGACAGAGC----GTTTGGA.........................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TGGACC-AGTGCACACGACA	19	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........................................................TCCTTCGACAGAGC----GTTTGGAT........................................................................................................................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TTTTGTGGACC-AGTGCACACGAC.	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TGCCGTCAGACAGTTCGATCGTGT.............................................................................................................................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................ACCCGCAGATCGACTCCGTGCT..............................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TTTTGTGGACC-AGTGCACACGA..	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CAGATCGACTCCGTGCTCTCC..........................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................CTGCCGTCAGACAGTTCGATCGTGTA............................................................................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.......................................................CATCCTTCGACAGAGC----GTTTGGATA.......................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................GAGCATCCTTCGACAGAGC----GTTTGGAA........................................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTGATTTTTGTGGACC-AGTGC........	21	8	0.13	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................CGCAGATCGACTCCGTGCT..............................................................	19	8	0.13	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TACCCGCAGATCGACTCCGTGCTCTT...........................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CGTGCTCTCCGCCCATTT-TCAATT...........................................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................ATTTTTGTGGACC-AGTGCA.......	19	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................TCTGCCGTCAGACAGTTCGATCGTG..............................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TTTGTGGACC-AGTGCACACGACA	23	8	0.13	1	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................................CAGATCGACTCCGTGCTCTCCG.........................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTGATTTTTGTGGACC-AGTGCACA.....	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CCCGCAGATCGACTCCGTGCTCTCC..........................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CCGCAGATCGACTCCGTGCTCTC...........................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........................................................TCCTTCGACAGAGC----GTTTGGATA.......................................................................................................................................................................................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TGATTTTTGTGGACC-AGTGCAC......	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGCTGACGCAACT----CATGGGGAATTT....................................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...................................................TGAGCATCCTTCGACAGAGC----GTTT............................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................CCGTCAGACAGTTCGATCGTGTAT...........................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................GCTGACGCAACT----CATGGGGAATTTACCCGCA.............................................................................	31	9	0.11	1	0	0	0	0	0	0	0	0	1	0
.......................................................CATCCTTCGACAGAGC----GTTTGGA.........................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TTTACCCGCAGATCGACTCCGT.................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................ATTTTCATGTCGGCCCACGAGCACT..........................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ATTTACCCGCAGATCGACTCCGTG................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..........................TTTCATGTCGGCCCACGAGCACTTGG.......................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.....................CGAATTTTCATGTCGGCCCACGAGCAC...........................................................................................................................................................................................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TGGGGAATTTACCCGCAGATCGACTCCGT.................................................................	29	9	0.11	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GGGGAATTTACCCGCAGATCGACTCCGT.................................................................	28	9	0.11	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................TGACGCAACT----CATGGGGAATTT....................................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTACCCGCAGATCGACTCCGTG................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GGGAATTTACCCGCAGATCGACTCCG..................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................ACGCAACT----CATGGGGAATTTACCCGCA.............................................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0
......................................................GCATCCTTCGACAGAGC----GTT.............................................................................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.........................TTTTCATGTCGGCCCACGAGCACTTGG.......................................................................................................................................................................................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................CCGTCAGACAGTTCGATCGTGTATGC.........................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................CCGTCAGACAGTTCGATCGTGTA............................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................................................ATCCTTCGACAGAGC----GTTTGGAA........................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TTTACCCGCAGATCGACTCCG..................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0

droPer2

ATATTCGTCATCTGCACCATTCGAATTTTCATGTCGGCCCACGAGCACTTGTGAGCATCCTTCGACAGAGC----GTGTGGATAGTGAACGCTCAGGAGGTCTGCCGTCAGACAGTTCGATCATGTATGCGCTGTTTTAAATGCAAGCCTCGATTGCTGACGCAACT----CATGGGGAATTTACCCGCAGATCGACTCCGTGCTCTCCGCCCATTT-TCAATTTG------CGGCGTTGATTTTTGTGGACCATGTGCACACGACA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................CAACT----CATGGGGAATTTACCCGCA.............................................................................	24	20	0.70	14	0	14	0	0	0	0
..................................................................................................................................................................CAACT----CATGGGGAATTTACCCGCAGAT..........................................................................	27	20	0.35	7	0	7	0	0	0	0
..................................................................................................................................................................CAACT----CATGGGGAATTTACCCGC..............................................................................	23	20	0.30	6	0	6	0	0	0	0
..........................TTTCATGTCGGCCCACGAGCACTTG........................................................................................................................................................................................................................	25	20	0.30	6	6	0	0	0	0	0
..............................................................................TGGATAGTGAACGCTCAGGAGG.......................................................................................................................................................................	22	20	0.25	5	0	5	0	0	0	0
...............................................................GACAGAGC----GTGTGGATAGTGAACGC...............................................................................................................................................................................	25	20	0.20	4	0	2	0	0	0	2
.............................................................................GTGGATAGTGAACGCTCAGGAGGTC.....................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	4
.........................................................TCCTTCGACAGAGC----GTGTGGATAGTG....................................................................................................................................................................................	26	20	0.20	4	0	4	0	0	0	0
..........................TTTCATGTCGGCCCACGAGCACTTGTG......................................................................................................................................................................................................................	27	20	0.20	4	0	4	0	0	0	0
...................................................................................................................................................................AACT----CATGGGGAATTTACCCGCAGAT..........................................................................	26	20	0.15	3	0	3	0	0	0	0
...........................TTCATGTCGGCCCACGAGCACT..........................................................................................................................................................................................................................	22	20	0.15	3	0	3	0	0	0	0
..........................................................................................................................................................TGCTGACGCAACT----CATGGG..........................................................................................	19	20	0.10	2	0	2	0	0	0	0
.........................................................TCCTTCGACAGAGC----GTGTGG..........................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................................TCGATTGCTGACGCAACT----CATGGG..........................................................................................	24	20	0.10	2	0	2	0	0	0	0
..................................................................................TAGTGAACGCTCAGGAGGTCTGCCG................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
............................TCATGTCGGCCCACGAGCACT..........................................................................................................................................................................................................................	21	20	0.10	2	0	1	1	0	0	0
..........................TTTCATGTCGGCCCACGAGCA............................................................................................................................................................................................................................	21	20	0.10	2	0	0	1	0	0	1
.........................................................TCCTTCGACAGAGC----GTGTGGAT........................................................................................................................................................................................	22	20	0.10	2	0	1	1	0	0	0
...................................................TGAGCATCCTTCGACAGT......................................................................................................................................................................................................	18	20	0.10	2	2	0	0	0	0	0
...........................TTCATGTCGGCCCACGAGCACTT.........................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0
..........................TTTCATGTCGGCCCACGAGCACTTGT.......................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
....................................................................................................TCTGCCGTCAGACAGTTCGATCATGTAT...........................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
..............................................................................TGGATAGTGAACGCTCAGG..........................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
..........................TTTCATGTCGGCCCACGAGCACTTGA.......................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
..................ATTCGAATTTTCATGTCGGCC....................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..........................TTTCATGTCGGCCCACGAG..............................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................CAAGCCTCGATTGCTGACG.........................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.........................................CGAGCACTTGTGAGCATCCTTCGACA........................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................TGCTGACGCAACT----CATGGGGAATT.....................................................................................	24	20	0.05	1	0	0	1	0	0	0
....................................................................................................................TCGATCATGTATGCGCTGTTTTAAATG............................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................GCAACT----CATGGGGAATTTACCCGCAGATC.........................................................................	29	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................TCAATTTG------CGGCGTTGATTTTTGTGG.................	26	20	0.05	1	0	1	0	0	0	0
...................................................TGAGCATCCTTCGACAGAGC----GTGTG...........................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
......................................................................................GAACGCTCAGGAGGTCTGCC.................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
...................................................TGAGCATCCTTCGACAGAGC----GTGTGGAA........................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
................................................................................................................................GCGCTGTTTTAAATGCAAGCCTCGAT.................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................GCAGATCGACTCCGTGCTCTC...........................................................	21	20	0.05	1	0	1	0	0	0	0
...............................................................................GGATAGTGAACGCTCAGGAGGTC.....................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................TGACGCAACT----CATGGGGAATTTAC..................................................................................	24	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................CGATTGCTGACGCAACT----CATGGGG.........................................................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................................CGCTCAGGAGGTCTGCCGTC..............................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
......................................................................................................TGCCGTCAGACAGTTCGATCATGTA............................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................AAGCCTCGATTGCTGACGCAACT----................................................................................................	23	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................GACTCCGTGCTCTCCGCCCATTT-TCA..............................................	26	20	0.05	1	0	1	0	0	0	0
..............................ATGTCGGCCCACGAGCACTTG........................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.....................................................AGCATCCTTCGACAGAGC----GT..............................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
........................................................................................................................TCATGTATGCGCTGTTTTAAATGCAAGCC......................................................................................................................	29	20	0.05	1	0	1	0	0	0	0
......................................................................................................TGCCGTCAGACAGTTCGATCATGTATG..........................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.............................CATGTCGGCCCACGAGCACTT.........................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
........................................................ATCCTTCGACAGAGC----GTGTGG..........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
......................................................GCATCCTTCGACAGAGC----GTGTGGA.........................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................TCCGTGCTCTCCGCCCATTT-TCAAT............................................	25	20	0.05	1	0	1	0	0	0	0
.........................................................TCCTTCGACAGAGC----GTGTGGATAGTGT...................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
...................................................................GAGC----GTGTGGATAGTGAACG................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.............................................................................................................AGACAGTTCGATCATGTATGCGC.......................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................TTTACCCGCAGATCGACTCCGTGCTC.............................................................	26	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................GATCGACTCCGTGCTCTCCGC........................................................	21	20	0.05	1	0	1	0	0	0	0
...................................................................................................................TTCGATCATGTATGCGCTGTTT..................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................GACGCAACT----CATGGGGAATTTACCC................................................................................	25	20	0.05	1	0	1	0	0	0	0
...........................................................................................................TCAGACAGTTCGATCATGTATGCGCTG.....................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
..................................................................................................GGTCTGCCGTCAGACAGTTCGATCA................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................CATGTATGCGCTGTTTTAAATGCAA.........................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................ACCCGCAGATCGACTCCGTGC...............................................................	21	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................GCAACT----CATGGGGAATTTACCCGCAT............................................................................	26	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................TG------CGGCGTTGATTTTTGTGGACCA.............	24	20	0.05	1	0	1	0	0	0	0
...................................................TGAGCATCCTTCGACAGAGC----GTGTGGA.........................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
..........................TTTCATGTCGGCCCACGAGCACTTGTGT.....................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................TTAAATGCAAGCCTCGATTG...............................................................................................................	20	20	0.05	1	0	0	0	0	0	1
......................................................GCATCCTTCGACAGAGC----GTGTGG..........................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...............................................................................GGATAGTGAACGCTCAGGAGGTCT....................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.............................................................................GTGGATAGTGAACGCTCAGGAGG.......................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................................................TTT-TCAATTTG------CGGCGTTG...........................	19	20	0.05	1	0	1	0	0	0	0
...........................TTCATGTCGGCCCACGAGCAC...........................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................CCGTGCTCTCCGCCCATTT-TCAATT...........................................	25	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................GCTGACGCAACT----CATGGG..........................................................................................	18	20	0.05	1	0	1	0	0	0	0

droWil2

ATGTCCGTCATCTCCATTTATCGAATTGTCATGTTGGCCCAAGAGCTTTAGTGAGCACCCTGCGTGAACAG----CTATGGGTTGTTAAAGCTTTAGAAGTCTTCCGTCAGACAGTGAGGTCTTGTGTATTATGTTTTAAATACAAGCCACCTCTTATGACGCAAATATGTAATGGGAAATTTTCCGGCAGACAGAGTTAGAGAGCTCCGCCCATTC-AGCATTTG------CGGCGTAGATTTTTGTGGTAC-AGTACACATAACA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

TTATTAGATACCCGCACTTGTAGGATTACCATTCTGGTCCAAGAGAAGTTGTGAGTCTTCTTCATTAGCGA----CTTTGGCTAATTAACGCTCAACAGGTCTGTCGTCAGGCAGTAAGAACATGCATCCGTT--TTTAAATGCAAACCTCATTTGCTAATTCAAAT----TATGA-AAATTAACCAGCAGGTCGACTCTGAGCGTTTCGCCCATTT-TCTATATC------TGGTGTCGATTTTTGTAGACC-AATTAGCACGACC

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

ATTTGGAGCATTTGCATCGCTCGCATTGCCACGAAAATCCACTAGTACTAATGGGCCTGCTTCGTCAGCAG----GTTTGGCTGGTAAATGCTCGAGAGGCTTGCAGTGCAGTAGTCCGAAAATGTGTACATTGTTTTCGCTACAAGCCGAAACTCTTATCCCAAAT----AATGGGCAATCTTCCCGCTGATCGCTTACATGGAAATAGGCCATTT-CAGATCAG------TGGAGTGGACTTTTGTGGTCT-AATATTAGTTTCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................TAGTACTAATGGGCCTGCTTCGTC.........................................................................................................................................................................................................	24	20	3.40	68	64	4	0	0	0	0
.............................................................................................................................TGTACATTGTTTTCGCTACAAGCC......................................................................................................................	24	20	2.65	53	35	1	0	0	17	0
.............................................................................................................................TGTACATTGTTTTCGCTACAAGCCGA....................................................................................................................	26	20	2.25	45	41	0	0	0	4	0
..........................................TAGTACTAATGGGCCTGCTTCGTCAG.......................................................................................................................................................................................................	26	20	1.20	24	24	0	0	0	0	0
......................................................................................................................................................................................................ACATGGAAATAGGCCATTT-CAGATCA..........................................	26	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................TGTACATTGTTTTCGCTACAAGCCGAA...................................................................................................................	27	20	1.00	20	20	0	0	0	0	0
.....................................................................................................................................................................................................TACATGGAAATAGGCCATTT-C................................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................TTTGGCTGGTAAATGCTCGAGAGGC......................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................TACATGGAAATAGGCCATTT-CAGA.............................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................TTGGCTGGTAAATGCTCGAGAGGC......................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........................................TAGTACTAATGGGCCTGCTTCGTCAGC......................................................................................................................................................................................................	27	20	0.80	16	0	0	0	0	16	0
..........................................TAGTACTAATGGGCCTGCTTCGTCAGCA.....................................................................................................................................................................................................	28	20	0.40	8	8	0	0	0	0	0
..........................................TAGTACTAATGGGCCTGCTTCG...........................................................................................................................................................................................................	22	20	0.40	8	8	0	0	0	0	0
..............................................................................................................................GTACATTGTTTTCGCTACAAGCCGA....................................................................................................................	25	20	0.40	8	8	0	0	0	0	0
...............................................................................................................................................................TCCCAAAT----AATGGGCAATCTTCCCGC..............................................................................	26	20	0.35	7	7	0	0	0	0	0
.............................................................................................................................TGTACATTGTTTTCGCTACAAGCCGAAAC.................................................................................................................	29	20	0.30	6	0	0	0	0	6	0
.............................................TACTAATGGGCCTGCTTCGTCAGC......................................................................................................................................................................................................	24	20	0.30	6	6	0	0	0	0	0
...........................................AGTACTAATGGGCCTGCTTCGTCA........................................................................................................................................................................................................	24	20	0.30	6	6	0	0	0	0	0
...............................................................................................................................................................................................ATCGCTTACATGGAAATAGGC.......................................................	21	20	0.25	5	5	0	0	0	0	0
............................................................................................................................................................TTATCCCAAAT----AATGGGCAATCTTCCCGC..............................................................................	29	20	0.20	4	4	0	0	0	0	0
............................................................................................................................GTGTACATTGTTTTCGCTACAAGCCGAA...................................................................................................................	28	20	0.20	4	4	0	0	0	0	0
..........................................TAGTACTAATGGGCCTGCTTC............................................................................................................................................................................................................	21	20	0.20	4	3	0	0	0	1	0
.............................................................................................................................................TACAAGCCGAAACTCTTATCCCAAAT----AA..............................................................................................	28	20	0.15	3	3	0	0	0	0	0
.............................................................................................................................................................TATCCCAAAT----AATGGGCAATCTTCCCGC..............................................................................	28	20	0.15	3	0	0	0	0	3	0
...........................................................................................................................TGTGTACATTGTTTTCGCTAC...........................................................................................................................	21	20	0.15	3	3	0	0	0	0	0
.........................................................................................................................AATGTGTACATTGTTTTCGCT.............................................................................................................................	21	20	0.15	3	3	0	0	0	0	0
...........................................AGTACTAATGGGCCTGCTTCGTCAGC......................................................................................................................................................................................................	26	20	0.15	3	3	0	0	0	0	0
............................................................................................................................GTGTACATTGTTTTCGCTACAAGCCG.....................................................................................................................	26	20	0.15	3	3	0	0	0	0	0
.TTTGGAGCATTTGCATCGCTC.....................................................................................................................................................................................................................................................	21	20	0.15	3	1	0	0	2	0	0
............................................................................................................................GTGTACATTGTTTTCGCTACAAGCCGA....................................................................................................................	27	20	0.15	3	3	0	0	0	0	0
.................................................................................................................................................................................................CGCTTACATGGAAATAGGCCA.....................................................	21	20	0.15	3	2	0	1	0	0	0
................................................TAATGGGCCTGCTTCGTCAGCAG----GTT.............................................................................................................................................................................................	26	20	0.15	3	3	0	0	0	0	0
.................................................................................................AGGCTTGCAGTGCAGTAGTCCGAAAA................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
.............................................................................................................................TGTACATTGTTTTCGCTACAAGC.......................................................................................................................	23	20	0.10	2	0	0	0	0	2	0
......................................................................................................TGCAGTGCAGTAGTCCGAAAATG..............................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
.............................................................................................................CAGTAGTCCGAAAATGTGTACA........................................................................................................................................	22	20	0.10	2	0	0	0	0	0	2
...........................................................................................................................................................CTTATCCCAAAT----AATGGGCAATCTTCC.................................................................................	27	20	0.10	2	2	0	0	0	0	0
.....................................................................................................................................................................................CTTCCCGCTGATCGCTTACATGGAAA............................................................	26	20	0.10	2	0	0	0	2	0	0
..................................................................................................................................................................................AATCTTCCCGCTGATCGCTTA....................................................................	21	20	0.10	2	0	0	0	2	0	0
.................................................AATGGGCCTGCTTCGTCAGC......................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
..........................................TAGTACTAATGGGCCTGCTTCGTT.........................................................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
...........................................AGTACTAATGGGCCTGCTTCGTC.........................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
.........................................................TGCTTCGTCAGCAG----GTTTGGC.........................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................G------TGGAGTGGACTTTTGTGGTC...............	21	17	0.06	1	1	0	0	0	0	0
........................................................................................................................AAATGTGTACATTGTTTTCGCTACAAG........................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................CGAAAATGTGTACATTGTTTT.................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0
...............................................................................................................................................................................GGCAATCTTCCCGCTGATCGC.......................................................................	21	20	0.05	1	1	0	0	0	0	0
....................................................................................................CTTGCAGTGCAGTAGTCCG....................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
..............................................ACTAATGGGCCTGCTTCGTC.........................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................TGTACATTGTTTTCGCTACAAGCCG.....................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.........................................................TGCTTCGTCAGCAG----GTTTGGCTG.......................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................ATGTGTACATTGTTTTCGCTACAAGC.......................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...................................................................................................................TCCGAAAATGTGTACATTGTT...................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..........................................................................................................GTGCAGTAGTCCGAAAATGT.............................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.........................................................TGCTTCGTCAGCAG----GTTTGGCT........................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................TCTTATCCCAAAT----AATGGGCAAT......................................................................................	23	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................TGTGTACATTGTTTTCGCTACAAGC.......................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................TACATTGTTTTCGCTACAAGCCGAAAC.................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...................................................................................................GCTTGCAGTGCAGTAGTCCGAA..................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................CATTGTTTTCGCTACAAGC.......................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................ATCAG------TGGAGTGGACTTTTG....................	20	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................TGTACATTGTTTTCGCTACAAGCCT.....................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
..................................................................................................GGCTTGCAGTGCAGTAGTCC.....................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
........................................................................................................................AAATGTGTACATTGTTTTCGC..............................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................CCGAAACTCTTATCCCAAAT----AATGGGCAA.......................................................................................	29	20	0.05	1	1	0	0	0	0	0
...........................................................................................................TGCAGTAGTCCGAAAATGTGTAC.........................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
..................................................ATGGGCCTGCTTCGTCAGCAG----................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................TCTTATCCCAAAT----AATGGGCAATCTTCC.................................................................................	28	20	0.05	1	1	0	0	0	0	0
..........................................................................................................GTGCAGTAGTCCGAAAATGTG............................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.....................................................................................................TTGCAGTGCAGTAGTCCGA...................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.........................................CTAGTACTAATGGGCCTGCTTCGTCAGC......................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................TCGCTACAAGCCGAAACTCT..............................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.........................................CTAGTACTAATGGGCCTGCTTCGTCA........................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.....................................................................................................TTGCAGTGCAGTAGTCCGACC.................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
................................................................................................................................................................................GCAATCTTCCCGCTGATCGCT......................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................................................................TAGTCCGAAAATGTGTACATT......................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..............................................ACTAATGGGCCTGCTTCGTCA........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0
..........................................................................................................................ATGTGTACATTGTTTTCGC..............................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................TGTGTACATTGTTTTCGCTA............................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................ATTGTTTTCGCTACAAGCC......................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................AATGGGCAATCTTCCCGCTG............................................................................	20	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................TCCCGCTGATCGCTTACATGG...............................................................	21	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................TCTTATCCCAAAT----AATGGGCAATCT....................................................................................	25	20	0.05	1	0	0	0	0	1	0
..........................................................................................................GTGCAGTAGTCCGAAAATGTGTA..........................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................TTGTTTTCGCTACAAGCCGAA...................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
...................................................................................................GCTTGCAGTGCAGTAGTCCGAAA.................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...........................................................................................................TGCAGTAGTCCGAAAATGTGTACATTG.....................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...................................................................................................GCTTGCAGTGCAGTAGTCCGA...................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
........................................................................................................................AAATGTGTACATTGTTTTCGCTACAAGCC......................................................................................................................	29	20	0.05	1	0	0	0	0	1	0
......................................................................................................TGCAGTGCAGTAGTCCGTC..................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
..........................................TAGTACTAATGGGCCTGCTTCGTCA........................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
.....................................................................................................TTGCAGTGCAGTAGTCCGAAA.................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................TGTACATTGTTTTCGCTAC...........................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
..........................................................................................................GTGCAGTAGTCCGAAAATGTGT...........................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
...........................................................................................................TGCAGTAGTCCGAAAATGTGT...........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
....................................................................................................CTTGCAGTGCAGTAGTCCGAAAATG..............................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................CAAGCCGAAACTCTTATCCCA.......................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droGri2

ATGTGCGGCTTCTACATCT-TCGCAACTGCATGCTGGACCTAAAGCTTTAGTGGCACTCATTCGATTGGAA----TATTGGATCGTAAACGCCAGAGACTTGGCACGTCGCATCGTGCGAACCTGCATGGCGTGTATTCGGTACAAGCCAAAATTGGAAAGGCAGCT----TACGGGATCGCTGCCAGTGGAGCGCCTTCGACCGGAACACCCATTC-CAACGCTG------TGGTATCGACTTCTGTGGGCC-AATAAATACGTAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................................................................................CTGCCAGTGGAGCGCCTTCGAC................................................................	22	20	0.05	1	1	0

dan_2216

scaffold_13149:6083-6233 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-37.5	-37.5	-37.3