ID:

dan_2201

 Coordinate:

scaffold_13335:498461-498611 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.5 -30.0 -30.0

Flybase annnotation

exon [dana_GLEANR_21486:1]; CDS [Dana\GF19445-cds]; intron [Dana\GF19445-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATGATGGTGGAATGGTGGACCAGGGAGGGCAGTCGACGTGGAGGGAACATGTGAACAGATTGCATGCAAATTGCGGCAGGATTGCTGCCACCAGGAGAACAACACAATCCCCAGGGATATTTCGGCCAGCAGTAGCAGCAACACGATGGCATTTCGTTATAGTTTCGTTAACTTTGGACATCTTCCGCTCAGCCCCTGCAACGAACGGCCTTGCAATCCAGGACTCCATCTACCCAGGAAAAAAATAAACG
**************************************************.........(((((.((.....((((.(((((((((((.((..((.(((.......((((....))))..)))..))....)).))))))..((((.......))))...((((.....))))......)))))))))...))...)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
 V039
embryo
....................................................................................................................................................................................TCTTCCGCTCAGCCCCTGCAACGAACG............................................ 27 0 1 1.00 1 1 0 0
...................................................TGAACAGATTGCATGC........................................................................................................................................................................................ 16 0 1 1.00 1 0 1 0
.............................................................................................................................................................TATAGTTTAGGTAACTTT............................................................................ 18 2 20 0.15 3 3 0 0
...........................................................................................................................................................................................CTCAGCACCTGCAACGACCT............................................ 20 3 9 0.11 1 1 0 0
..GAGGGTCGAATGGTGGAC....................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 1 0
.....................................................................................................ACACAATCCCCAGGCATT.................................................................................................................................... 18 2 12 0.08 1 0 0 1
.......................................................................................CAACCAGGAGAACACCAC.................................................................................................................................................. 18 2 16 0.06 1 0 0 1
...................................................................................GTTGCCATCAGGAGAACTA..................................................................................................................................................... 19 3 20 0.05 1 0 1 0
......................................GAGAGGGAACAAGTGAACA.................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0

Anti-sense strand reads

TACTACCACCTTACCACCTGGTCCCTCCCGTCAGCTGCACCTCCCTTGTACACTTGTCTAACGTACGTTTAACGCCGTCCTAACGACGGTGGTCCTCTTGTTGTGTTAGGGGTCCCTATAAAGCCGGTCGTCATCGTCGTTGTGCTACCGTAAAGCAATATCAAAGCAATTGAAACCTGTAGAAGGCGAGTCGGGGACGTTGCTTGCCGGAACGTTAGGTCCTGAGGTAGATGGGTCCTTTTTTTATTTGC
**************************************************.........(((((.((.....((((.(((((((((((.((..((.(((.......((((....))))..)))..))....)).))))))..((((.......))))...((((.....))))......)))))))))...))...)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V055
head
............ACCACCCGGTCCCTCCTG............................................................................................................................................................................................................................. 18 2 20 0.65 13 13 0 0 0
.................................................................................................................................................................................TGTAGAAGGCGCGTCCGG........................................................ 18 2 3 0.33 1 0 1 0 0
....................................................................................................................................................................................AGAAGGCGAGTAAGGGGCGT................................................... 20 3 10 0.10 1 0 0 1 0
......................................................................................................GTGTTGGGGGTCGGTATAAA................................................................................................................................. 20 3 13 0.08 1 0 0 0 1
............................................CAAGTACACTTGTCAAACGT........................................................................................................................................................................................... 20 3 15 0.07 1 0 1 0 0
....................................................................................................................................................................................AGAAGGCGAGTAAGGGGCG.................................................... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13335:498411-498661 - dan_2201 ATGATGGTGGAATGGTGGACCAGGGAGGGCAGTCGACGTGG-------------------------------------------------------------AGGGAACATGTG-AACAGATTGCATGCAAATTGCGGCAGGATTGC----TGCCACCAGGAGAACAACACAATCCCCAGGGATAT--------TTCGGCCAGCAGTA------------GCAGCAACACGATGGCATTTC-------GTTATAGTTTCGTTAACTTTGGACATCTTCCGCTCAGCCCCTGCAACG-AACGGCCTTGCAATCCAGGACTCCATCTACCCAGGAAAAAAATAAACG
droBip1 scf7180000396494:2340-2619 + ATGAA------------------------------------------ATTGGAGAACGGGGCGAAGGACAGCTGGGGGGAGGCCATAGGTGGCAAGACACCAAGGCAACATGTG-AACAGATTGCATGCAAATTGCGGCAGGATTGC----TGCCACCAGGAGAACAACACAATCCCCAGGGATAT--------TTCGGCCACCAGCAGCAGCAGCAACAGCAGCAACACGATGGCATTTC-------GTTATAGTTTCCTTAACTTTGGACACCTTCCGCCTAACCCATGCCCCAAAACGGCCTTGCAACCCA--TCTCCC-CCCCCCACAAAAAATACCACCG
droRho1 scf7180000777155:9504-9674 - ATA-----------------------------------TGGAGAGAAATCG-----------------------------------------------------TTATCATATAATACTGATTGGACCCATATTGCGGCAGGAATGCAGACTGCAGCCAGTATAACAACACCATGCCATGGTTTTCAGCTAGGTTTTGG-------------------------CCTCACGCTGGCATTTTGCTCTGCGCTGTGGTTTCGTTAACTTTAGTCACCCACCGCCAA-------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ATGATGGTGGAATGGTGGACCAGGGAGGGCAGTCGACGTGG-------------------------------------------------------------AGGGAACATGTG-AACAGATTGCATGCAAATTGCGGCAGGATTGC----TGCCACCAGGAGAACAACACAATCCCCAGGGATAT--------TTCGGCCAGCAGTA------------GCAGCAACACGATGGCATTTC-------GTTATAGTTTCGTTAACTTTGGACATCTTCCGCTCAGCCCCTGCAACG-AACGGCCTTGCAATCCAGGACTCCATCTACCCAGGAAAAAAATAAACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................TCTTCCGCTCAGCCCCTGCAACG-AACG............................................2711.001100000
................................................................................................................TG-AACAGATTGCATGC........................................................................................................................................................................................................................1611.001000100
droBip1
ATGAA------------------------------------------ATTGGAGAACGGGGCGAAGGACAGCTGGGGGGAGGCCATAGGTGGCAAGACACCAAGGCAACATGTG-AACAGATTGCATGCAAATTGCGGCAGGATTGC----TGCCACCAGGAGAACAACACAATCCCCAGGGATAT--------TTCGGCCACCAGCAGCAGCAGCAACAGCAGCAACACGATGGCATTTC-------GTTATAGTTTCCTTAACTTTGGACACCTTCCGCCTAACCCATGCCCCAAAACGGCCTTGCAACCCA--TCTCCC-CCCCCCACAAAAAATACCACCGSizeHit CountTotal NormTotal
No Reads
droRho1
ATA-----------------------------------TGGAGAGAAATCG-----------------------------------------------------TTATCATATAATACTGATTGGACCCATATTGCGGCAGGAATGCAGACTGCAGCCAGTATAACAACACCATGCCATGGTTTTCAGCTAGGTTTTGG-------------------------CCTCACGCTGGCATTTTGCTCTGCGCTGTGGTTTCGTTAACTTTAGTCACCCACCGCCAA-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 04:01 AM