dan_2193

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGAAAGAGATAATCAATTGTTTGGAGTGTGGCCAAAATTAGTCTGGAAAGTAGATGAAAGCCAGGCAAGAAGTTCGTAAAAGATAGAATATGAATAAAAATGATTTAAGGAGTAATTGCGATAAGGATAAGCTATAGTTATTGATATAGCCTTCTATAGATCCTTCTATAACCTTCCAAATTATCCTTTTTTGTTTTTTAGGCAATGATTTTGGTGGCGTTACCATCCACTCCAAGGACATCCTGTCCCGT ************************************************.....................(((((((..........)))))))((((((((...(((((.(((((.....((((....((((((........))))))....((((((....)))))).))))...))))))))))..))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V106 head	M044 female body	V039 embryo	V055 head	V105 male body
.........................................................AAGCCAGGCAAGAAGTAC................................................................................................................................................................................	18	1	1	37.00	37	12	13	3	5	4	0
...................................................................................................................................................................................................................................CACACCAAGGACGTCCTGTC....	20	2	1	19.00	19	17	0	1	1	0	0
...................................................................................................................................................................................................................................CACACCAAGGACGTCCTGTCG...	21	3	2	3.00	6	2	0	2	0	0	2
......................................................TCCAAGCCAGGCAAGAAGTAC................................................................................................................................................................................	21	3	2	2.00	4	0	3	1	0	0	0
..................................................................................................................................................................................................................................ACACACCAAGGACGTCCTGTC....	21	3	3	1.33	4	2	0	1	1	0	0
..........................................................................................................................................................................................................................GTTACCATCCACTCCAAGGACATCCTGT.....	28	0	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................GGCAATGATTTTGGTGGC.................................	18	0	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................ACACCAAGGACGTCCTGTC....	19	2	2	1.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................ATATGGGCAATGATTTTGGTGGCGT...............................	25	3	1	1.00	1	0	0	0	0	0	1
...........................................................................GTAAAAGATAGTATCTGAATAAAG........................................................................................................................................................	24	3	1	1.00	1	0	0	1	0	0	0
.........................................................AAGCCAGGCAAGAAGTACA...............................................................................................................................................................................	19	2	3	0.67	2	0	0	2	0	0	0
...............................................AATTAGATGAAAGCCAGGC.........................................................................................................................................................................................	19	1	2	0.50	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................CACACCAAGGACGTCCTGT.....	19	2	2	0.50	1	1	0	0	0	0	0
......................................................................................................................CGATGAGGATAGGTTATAGT.................................................................................................................	20	3	2	0.50	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................CACGCCAAGGACGTCCTGTC....	20	2	2	0.50	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................CACACCAAGGACGTACTGTC....	20	3	3	0.33	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................CACACCAAGGACGTCCGGTC....	20	3	3	0.33	1	1	0	0	0	0	0
........................................................CAAGCCAGGCAAGAAGTAC................................................................................................................................................................................	19	2	3	0.33	1	1	0	0	0	0	0
.........................................................AACCCAGGCAAGAAGTAC................................................................................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................CACCAAGGACGTCCTGTCC...	19	2	5	0.20	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................ACACCAAGGACGTCCTGTCG...	20	3	8	0.13	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................CAAACCAAGGACGTCCTGTC....	20	3	8	0.13	1	1	0	0	0	0	0
.........................................................AAGCCAGTCAAGAAGTAC................................................................................................................................................................................	18	2	11	0.09	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................CACACCAAGGACGTCCGGT.....	19	3	14	0.07	1	0	0	0	1	0	0
..........................................................TGCAAGGCAAGAAGTTAGT..............................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................TCTTTAGGCAATGAATTT.......................................	18	2	20	0.05	1	0	0	0	1	0	0

ACTTTCTCTATTAGTTAACAAACCTCACACCGGTTTTAATCAGACCTTTCATCTACTTTCGGTCCGTTCTTCAAGCATTTTCTATCTTATACTTATTTTTACTAAATTCCTCATTAACGCTATTCCTATTCGATATCAATAACTATATCGGAAGATATCTAGGAAGATATTGGAAGGTTTAATAGGAAAAAACAAAAAATCCGTTACTAAAACCACCGCAATGGTAGGTGAGGTTCCTGTAGGACAGGGCA ************************************************.....................(((((((..........)))))))((((((((...(((((.(((((.....((((....((((((........))))))....((((((....)))))).))))...))))))))))..))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	M044 female body	V039 embryo	M058 embryo	V105 male body
.........................................................TTCGGTCCGTTCTTCATGT...............................................................................................................................................................................	19	2	3	1.67	5	0	5	0	0	0
........................................................TCTCGGTCCATACTTCAAGCAT.............................................................................................................................................................................	22	3	2	1.00	2	2	0	0	0	0
.........................................................................................................................................................GATATCTAGGAAGATTGTGG..............................................................................	20	2	1	1.00	1	1	0	0	0	0
........................................................TTTCGGTCCGTTCTTCATGT...............................................................................................................................................................................	20	2	1	1.00	1	0	1	0	0	0
.........................................................TTCGATCCGTTCATCAAGCAT.............................................................................................................................................................................	21	2	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................GCAATGGTCGGTGAGGAT................	18	2	2	0.50	1	1	0	0	0	0
........................................................GTTCGGTCCGTTCTTCATG................................................................................................................................................................................	19	2	3	0.33	1	0	0	1	0	0
..........................................................TCGGTCCGTTCTTCATGT...............................................................................................................................................................................	18	2	9	0.11	1	0	0	0	1	0
...................................................................................................................................................................................CAATAGGAAAAAACAAAAA.....................................................	19	1	14	0.07	1	0	0	0	1	0
.......................................................GGTTCGGTCCGTTCTTCA..................................................................................................................................................................................	18	2	14	0.07	1	0	1	0	0	0
....................................................................................................................................................................................AATAGGAAAACACAAAAA.....................................................	18	1	15	0.07	1	0	0	0	1	0
..............................................................................................................................................................CTTGGAAGATGTTGGAACG..........................................................................	19	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13334:1310985-1311235 +	dan_2193	TGAAAGAGATAATCAATTGTTTG-----------------------GAGTGTGGCCAAAATTAGTCTGGAAAGTAGATGAAAGCCAGGCAAGAA------------------------------GT---------------------TCGTAAAAGATAGAAT--ATGAATAA--------AAATGATTTAAGGAGTAATTGCGAT--AAGGATAAGCTATAGTTATTGATATAGCC------------------------------------------------------------------------------------------TTCTATAGATCCTTCTATAACCTTCC-----------------------------AAATTATC---C---TTTTTTGTTTTTTAGGCAATGATTTTGGTGGCGTTACCATCCACTCCAAGGACATCCTGTCCCGT
droBip1	scf7180000396512:47740-48019 -		ATTTTTAAATAATCATTTGATTA----------------------------------AAATTAATCTGAAAATTAGATGAAAGTCAAGCA-GAAGTAGTTTAATTTTAAGAAATCAGCAATAAGAT---------------------TCTTAAAAGATAGTTT--ATAAATAA--------AAATGATTAAAGATATTCTATCGATGATAAAGTAT---------------------------------------------------TAAAATTTTTAAGGTTTAAAGCTA-------------ATAAATTAAACGT----------TTTTTTAGTTTCTT-------TAACT-----------------------------AATTTATC---T---TTTTTTGCTTTTCAGGCAACGATTTTGGTGGCGTTACCATACACTCCAAGGACATCCTGTCCCGT
droKik1	scf7180000302592:1530615-1530851 -		AAAAATAAATAATCTCTTGAAGTAATTAAAACACACAGTTATCTTTGAGTAGGCTAAAAATCTATCGGATGATT-----------AATCT----GTGATGCTAT--TTTAAAAACTAC--------------------------------------------------------------------------------------------------------------------------TTAAACATTAT---------------------CTT----------------------------------------------------------GTTATCGC-------AACCTAAATTATAGTTTAAAATGTATGAGTTACTAATGAATATCACAACTTTCCCCCTCTAAAGGCAACGATTTTGGTGGCGTAACCATTCATTCCACGGAAATTCTCTCGCAG
droFic1	scf7180000454077:407730-407815 -		TCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----CT----------------------------------TATTCTCATTATT--TCTTTTTGCTTTCAGGAAATGACTTTGGCGGCGTGACCATACATTCCAAGGATATCCTTTCCCGG
droEle1	scf7180000490214:988126-988209 +		C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTG-----CT----------------------------------AATCCTCATTTT---ATCTGTTTGCTATAGGCAACGACTTTGGCGGCGTAGTCATACATTCGAAGGACATCCTTTCCCGG
droRho1	scf7180000780082:292117-292200 +		C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTC-----CT----------------------------------AATCCTCATATT---TTCTATTTCATTTAGGAAACGACTTTGCCGGCGTGACCATACATTCCAAGGACATCCTTTCCCGG
droBia1	scf7180000302187:585822-585873 +		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAACGACTTTGGCGGCGTGACCATACATTCCAAGGACATCCTTTCGCGG
droTak1	scf7180000415564:125560-125878 +		AGACAGT--------------------------------------------------------------CGATT-----------AATCA-GTAGTGAAGTTAT--TTAAAAACCTACTTCAAGATTTCTGTTAATCACGAAATTAACCGATAAAGAAAGTTTTTATAAATTAAATATTACAAACGATTAA-------TCTACAAT--AAATCTATGTTAGAGTTATCGATATTTTCGATATTTTGACAATATAGAATCGATAAAATCGATGTTTTGGAGGGATAACACAA-------------ATTAATTTT----TTCAACTTCTTTTGTAAACCCCTA-----CT----------------------------------AATTTATAATATT--TTCAATATGTTTTAGGCAACGACTTTGGCGGCGTGACCATACATTCCAAGGACATTCTTTCCCGG
droEug1	scf7180000405574:12526-12636 +		TAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------CAAATTTGGAGT----------TTTGATAATTCCTG-----CT----------------------------------AATGCCAATTTC---TTCTTTTAAATTTAGGCAACGACTTTGGCGGTGTGACCATATACTCCAAGGACATTCTTTCCCGG
dm3	chrX:20897999-20898269 -		CGAAATCTATCAGTCAT---TCTAGTTAA----------------------------------------------------------------------------------AACCGCGATGAAGATTTCTGTCTATCACAAAATGAACTAAAAACGAAAGTAT--GTGAGTTGA---------ATGTTTGAAGATGTT-------TGAAAAAGTACAGTACAGTAATTGAAATATACTACTTAATGATTCC---------------------CTTTGTATTAA-TTCCCAAGTTAATTTTAACA-----------------------C-TTATAAATCCTG-----TT----------------------------------AATCGATACTTA---TTCTTTTCGATTCAGGCAATGATTTTGGGGGCGTGACCATACACTCCAAGGATATCCTTTCCCGC
droSim2	x:19627196-19627368 -		ATAAATA--------------------------------------------------------------CCAAT--------------------------ATAT--TTAAAAAACC----------------------------------------------------------------------------------------------------ATTACAATAATTGAAATATAC---TCAATGTCTCC---------------------CTTTGAATTAA-TTCCCCAGTTAA--------------------------------TATATAAATCCTG-----TT----------------------------------AATCGATACCTA---TTCTTTTCGATTCAGGCAATGATTTTGGGGGCGTGACCATACACTCCAAGGATATCCTTTCCCGC
droSec2	scaffold_8:3183468-3183558 -		TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCCTG-----TT----------------------------------AATCGATACCTA---TTCTTTTCGATTCAGGCAATGATTTTGGGGGCGTGACCATACACTCCAAGGATATCCTTTCCCGC
droYak3	X:20109745-20109839 -		ATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAAATCCTG-----TT----------------------------------AATCAATACTTA---CTCTTTTCCATTCAGGCAATGATTTCGGAGGCGTGACGATTCACTCAAAGGATATCCTTTCTCGG
droEre2	scaffold_4690:17474718-17474824 -		AGTTATT--------------------------------------------------------------TGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA-----------------------TTTCACAAATCATG-----TT----------------------------------ATTTAATACCTA---TTCTTTTCGATTCAGGCAACGATTTCGGGGGCGTGACCATACACTCCAAGGATATCCTTTCTCGG
dp5	XL_group1e:9532132-9532183 -		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTAACGATTTCGGCGGAGTCACCATCCACTCTACCGAAATATTGCCACGC
droPer2	scaffold_22:679672-679723 +		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTAACGATTTTGGCGGAGTCACCATCCACTCCACCGAAATATTGCCACGC
droWil2	scf2_1100000004515:2381595-2381647 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGCAACGATTTTGGTGGCGTCACCATTCACTCGAGCGAGATTGTGCGACGT
droVir3	scaffold_12970:5210557-5210640 -		ACAAATT--------------------------------------------------------------TCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTCTC---A---TACAAAATCTTGCAGGCAACGACTTTGGTGGCATTACGATTTATTCCAAGGATATATTAAAGCGT
droMoj3	scaffold_6473:4777475-4777543 -		ATCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCGCATCTTTTAGGCAACGACTTTGGCGGCATCACTATCAACTCCAAGGATATCTTAAAGCGT
droGri2	scaffold_15081:148440-148496 +		T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGGCAATGATTTTGGTGGCATAACCGTACACTGCAAAGATATATTGGCACGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TGAAAGAGATAATCAATTGTTTG-----------------------GAGTGTGGCCAAAATTAGTCTGGAAAGTAGATGAAAGCCAGGCAAGAA------------------------------GT---------------------TCGTAAAAGATAGAAT--ATGAATAA--------AAATGATTTAAGGAGTAATTGCGAT--AAGGATAAGCTATAGTTATTGATATAGCC------------------------------------------------------------------------------------------TTCTATAGATCCTTCTATAACCTTCC-----------------------------AAATTATC---C---TTTTTTGTTTTTTAGGCAATGATTTTGGTGGCGTTACCATCCACTCCAAGGACATCCTGTCCCGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCATCCACTCCAAGGACATCCTGT.....	28	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGATTTTGGTGGC.................................	18	1	1.00	1	1	0	0	0	0	0

droBip1

ATTTTTAAATAATCATTTGATTA----------------------------------AAATTAATCTGAAAATTAGATGAAAGTCAAGCA-GAAGTAGTTTAATTTTAAGAAATCAGCAATAAGAT---------------------TCTTAAAAGATAGTTT--ATAAATAA--------AAATGATTAAAGATATTCTATCGATGATAAAGTAT---------------------------------------------------TAAAATTTTTAAGGTTTAAAGCTA-------------ATAAATTAAACGT----------TTTTTTAGTTTCTT-------TAACT-----------------------------AATTTATC---T---TTTTTTGCTTTTCAGGCAACGATTTTGGTGGCGTTACCATACACTCCAAGGACATCCTGTCCCGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAAATAAATAATCTCTTGAAGTAATTAAAACACACAGTTATCTTTGAGTAGGCTAAAAATCTATCGGATGATT-----------AATCT----GTGATGCTAT--TTTAAAAACTAC--------------------------------------------------------------------------------------------------------------------------TTAAACATTAT---------------------CTT----------------------------------------------------------GTTATCGC-------AACCTAAATTATAGTTTAAAATGTATGAGTTACTAATGAATATCACAACTTTCCCCCTCTAAAGGCAACGATTTTGGTGGCGTAACCATTCATTCCACGGAAATTCTCTCGCAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----CT----------------------------------TATTCTCATTATT--TCTTTTTGCTTTCAGGAAATGACTTTGGCGGCGTGACCATACATTCCAAGGATATCCTTTCCCGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTG-----CT----------------------------------AATCCTCATTTT---ATCTGTTTGCTATAGGCAACGACTTTGGCGGCGTAGTCATACATTCGAAGGACATCCTTTCCCGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTC-----CT----------------------------------AATCCTCATATT---TTCTATTTCATTTAGGAAACGACTTTGCCGGCGTGACCATACATTCCAAGGACATCCTTTCCCGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAACGACTTTGGCGGCGTGACCATACATTCCAAGGACATCCTTTCGCGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGACAGT--------------------------------------------------------------CGATT-----------AATCA-GTAGTGAAGTTAT--TTAAAAACCTACTTCAAGATTTCTGTTAATCACGAAATTAACCGATAAAGAAAGTTTTTATAAATTAAATATTACAAACGATTAA-------TCTACAAT--AAATCTATGTTAGAGTTATCGATATTTTCGATATTTTGACAATATAGAATCGATAAAATCGATGTTTTGGAGGGATAACACAA-------------ATTAATTTT----TTCAACTTCTTTTGTAAACCCCTA-----CT----------------------------------AATTTATAATATT--TTCAATATGTTTTAGGCAACGACTTTGGCGGCGTGACCATACATTCCAAGGACATTCTTTCCCGG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------CAAATTTGGAGT----------TTTGATAATTCCTG-----CT----------------------------------AATGCCAATTTC---TTCTTTTAAATTTAGGCAACGACTTTGGCGGTGTGACCATATACTCCAAGGACATTCTTTCCCGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

CGAAATCTATCAGTCAT---TCTAGTTAA----------------------------------------------------------------------------------AACCGCGATGAAGATTTCTGTCTATCACAAAATGAACTAAAAACGAAAGTAT--GTGAGTTGA---------ATGTTTGAAGATGTT-------TGAAAAAGTACAGTACAGTAATTGAAATATACTACTTAATGATTCC---------------------CTTTGTATTAA-TTCCCAAGTTAATTTTAACA-----------------------C-TTATAAATCCTG-----TT----------------------------------AATCGATACTTA---TTCTTTTCGATTCAGGCAATGATTTTGGGGGCGTGACCATACACTCCAAGGATATCCTTTCCCGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................AATGATTTTGGGGGCGTGACC...........................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGCGTGACCATACACTCCA.................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGATTTTGGGGGCG................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TACTTA---TTCTTTTCGATTC....................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGGGCGTGACCATACACTCCAA................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TA---TTCTTTTCGATTCAGGCAATGATTTT.......................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TTCTGTCTATCACAAAAT..............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACCATACACTCCAAGGATATCCT.......	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGGGCGTGACCATACACTC...................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AATGATTTTGGGGGCGTGA.............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TTTGAAGATGTT-------TGAAAAAGT........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGATTTTGGGGGCGTGAC............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TTCTGTCTATCACAAAATGAA...........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GTAT--GTGAGTTGA---------ATGTTTGAAG.............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGATTTTGGGGGCG................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GACCATACACTCCAAGGAT............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AATGATTTTGGGGGCGTGACCATACACTC...................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTCCAAGGATATCCTTTCCCGC	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGGGCGTGACCATA........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................ACA-----------------------C-TTATAAATCCTG-----TT----------------------------------AATC............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AATGATTTTGGGGGCGTGACCATA........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GTTGA---------ATGTTTGAAGACA..........................................................................................................................................................................................................................................................................	18	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATAAATA--------------------------------------------------------------CCAAT--------------------------ATAT--TTAAAAAACC----------------------------------------------------------------------------------------------------ATTACAATAATTGAAATATAC---TCAATGTCTCC---------------------CTTTGAATTAA-TTCCCCAGTTAA--------------------------------TATATAAATCCTG-----TT----------------------------------AATCGATACCTA---TTCTTTTCGATTCAGGCAATGATTTTGGGGGCGTGACCATACACTCCAAGGATATCCTTTCCCGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................TACAATAATTGAAATATAC---TCAATGTC......................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGATTCAGGCAATGATTTTGGG....................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGGGCGTGACCATACACTCCA.................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATTCAGGCAATGATTTTGGG....................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATTCAGGCAATGATTTTGGGGGC.................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATTCAGGCAATGATTTTGG.....................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATTCAGGCAATGATTTTGGG....................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TTCCCCAGTTAA--------------------------------TATATAAATCCTG-----T...................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTTTGGGGGCGTGACCATACACTG...................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCCTG-----TT----------------------------------AATCGATACCTA---TTCTTTTCGATTCAGGCAATGATTTTGGGGGCGTGACCATACACTCCAAGGATATCCTTTCCCGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATTCAGGCAATGAT..........................................	18	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCGATTCAGGCAATGATTTTGGGG...................................	28	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATACACTCCAAGGATATCCT.......	23	1	1.00	1	0	0	0	1

droYak3

ATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAAATCCTG-----TT----------------------------------AATCAATACTTA---CTCTTTTCCATTCAGGCAATGATTTCGGAGGCGTGACGATTCACTCAAAGGATATCCTTTCTCGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................AATGATTTCGGAGGCGTGACGATT........................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTCAAAGGATATCCTTTCTCG.	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGATTTCGGAGGCGTGACGATT........................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTCGGAGGCGTGAC............................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGGAGGCGTGACGATTCA......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAATGATTTCGGAGGCGTGACGATT........................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AATGATTTCGGAGGCGTGAC............................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGGAGGCGTGACGATT........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGGAGGCGTGACGATT........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AGTTATT--------------------------------------------------------------TGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATA-----------------------TTTCACAAATCATG-----TT----------------------------------ATTTAATACCTA---TTCTTTTCGATTCAGGCAACGATTTCGGGGGCGTGACCATACACTCCAAGGATATCCTTTCTCGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACGATTTCGGGGGC.................................	18	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACGATTTCGGGGGCGTGACC...........................	24	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTGACCATACACTCC..................	19	1	1.00	1	0	1	0	0	0	0	0

dp5

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTAACGATTTCGGCGGAGTCACCATCCACTCTACCGAAATATTGCCACGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGATTTCGGCGGAGTC..............................	20	1	4.00	4	1	0	0	0	0	0	2	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGGCGGAGTCACCATCC.......................	20	1	3.00	3	0	0	0	0	0	0	1	0	2	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACGATTTCGGCGGAGTC..............................	19	1	3.00	3	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTACCGAAATATTGCCAC..	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTCTACCGAAATATTGC.....	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCGAAATATTGCCACG.	19	1	2.00	2	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGTCACCATCCACTCTACCGAAA...........	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGGCGGAGTCACCATC........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCATCCACTCTACCGAAA...........	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGGCGGAGTCACCATCCA......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTTCGGCGGAGTCACCAT.........................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTCTACCGAAATATTGCCA...	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACCGAAATATTGCCACG.	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCGGAGTCACCATCCAC.....................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACGATTTCGGCGGAG................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCATCCACTCTACCGAA............	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGGCGGAGTCACCATC........................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACCGAAATATTGCCA...	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCATCCACTCTACCGA.............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CACCATCCACTCTACCGAAA...........	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGATTTCGGCGGAG................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGTCACCATCCACTCTACC...............	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCATCCACTCTACCGAAATATT.......	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACGATTTCGGCGGAGTCACC...........................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACGATTTCGGCGGAGAA..............................	19	3	0.67	2	0	0	0	0	0	0	0	0	2	0

droPer2

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTAACGATTTTGGCGGAGTCACCATCCACTCCACCGAAATATTGCCACGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACGATTTTGGCGGAG................................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTCCACCGAAATATTGCCACG.	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACGATTTTGGCGGAGTC..............................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACGATTTTGGCGGAGTC..............................	19	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGATTTTGGCGGAGTC..............................	20	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCATCCACTCCACCGA.............	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACGATTTTGGCGGAGTCAC............................	21	1	1.00	1	0	0	0	0	0	1

droWil2

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGCAACGATTTTGGTGGCGTCACCATTCACTCGAGCGAGATTGTGCGACGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCGAGATTGTGCGAC..	18	1	3.00	3	0	3	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACTCGAGCGAGATTGTGCGA...	24	1	3.00	3	0	1	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTCACCATTCACTCGAGCGA.............	23	1	2.00	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTCACCATTCACTCGAGC...............	21	1	2.00	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCATTCACTCGAGCGA.............	20	1	2.00	2	0	1	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CACCATTCACTCGAGCGAGATT.........	22	1	2.00	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGCGAGATTGTGCGACGT	22	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTGGCGTCACCATTCACTCGAGC...............	27	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATTTTGGTGGCGTCACCAT.........................	24	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCACCATTCACTCGAGCGAGA...........	24	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACTCGAGCGAGATTGTG......	21	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACTCGAGCGAGATTGTGC.....	22	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGCGAGATTGTGCGA...	19	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACGATTTTGGTGGCGTCACCATT........................	23	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCACCATTCACTCGAGCGAGATTGT.......	28	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACTCGAGCGAGATTGTGCA....	23	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCGAGCGAGATTGTG......	18	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCGAGCGAGATTGTGCG....	20	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCACCATTCACTCGAGC...............	19	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACGATTTTGGTGGCGTCACCATT........................	24	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACGATTTTGGTGGCGTCACC...........................	24	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CACCATTCACTCGAGCGAGATTGTGC.....	26	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGTGGCGTCACCATTCACTCG..................	26	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGATTTTGGTGGCGTCACCAT.........................	25	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCGAGCGAGATTGTGC.....	19	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACGATTTTGGTGGCGTCACCATTCACT....................	28	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCACTCGAGCGAGATTGTGC.....	23	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATTTTGGTGGCGT...............................	18	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCGTCACCATTCACTCGAGCGA.............	25	1	1.00	1	0	1	0	0	0

droVir3

ACAAATT--------------------------------------------------------------TCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTCTC---A---TACAAAATCTTGCAGGCAACGACTTTGGTGGCATTACGATTTATTCCAAGGATATATTAAAGCGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACGACTTTGGTGGCATTACGATTT.......................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACGATTTATTCCAAGGAT............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATTCCAAGGATATATTAAAGC..	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCGCATCTTTTAGGCAACGACTTTGGCGGCATCACTATCAACTCCAAGGATATCTTAAAGCGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACGACTTTGGCGGC.................................	18	1	1.00	1	1	0	0	0	0	0

droGri2

T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGGCAATGATTTTGGTGGCATAACCGTACACTGCAAAGATATATTGGCACGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_2193

scaffold_13334:1311035-1311185 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads