ID:

dan_2181

 Coordinate:

scaffold_13334:1054826-1055117 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-59.2 -59.2 -59.2

Flybase annnotation

CDS [Dana\GF21847-cds]; exon [dana_GLEANR_5744:6]; CDS [Dana\GF21847-cds]; exon [dana_GLEANR_5744:5]; intron [Dana\GF21847-in]

Repeatable elements

NameClassFamilyStrand
(CGGA)nSimple_repeatSimple_repeat+
AT_richLow_complexityLow_complexity+
mature
  1. scaffold_13137:152427-152445 -
  2. dan_2181  scaffold_13334:1054855-1054873 +
star

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGTACGGCAATGATTTTGGCTTGGAGGTGACGGAAAATCAGAATTTTACGGTAGGTTTTGGTCTAAAGTGGACTAGCGGACAGACGGACAGGCGGATAGGCGGACAGGCGGACACATGGACAAGTTATTTCAACCTATGAACTATGTTATGACTTAGACTAGTTCTAAGTTAATGTCCTTTAAACACTTGCCCTGATTAAAAATGATTTTAATCTTAAAAGTTTTAACTTAAAACTTGAGTCAGCGGACAGGCGGACAAGCGGACAGGCGGACAGCCGGACCTCCACTTGAAAAAACACCAAAAAACATATTAATTTATAATTTATATCCCTATTCTCATAGAGGCACATCTTGGAGCTGGGAAAGACGATCCAAGTGAGGGTCAACTCCCG
**************************************************((..(((((((((((...))))))))..)))..))(((..((.(((((.((......))((((((((((.........((((.....)))))))))...(((((((((.....))))))))).))))).........(((((..((((((((....))))))))....((((((((...))))))))..(((....))).))))).((((.(((..(((.....))).....))).))))...................................)))))))..))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M058
embryo
 V106
head
 M044
female body
 V039
embryo
 V055
head
...........................................................................................................................................................................................................................................................................................................................................................................AAGACGATCCAAGTGAGGGT......... 20 0 1 4.00 4 4 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................AGACGATCCAAGTGAGGGT......... 19 0 1 2.00 2 1 0 1 0 0 0
.............TTTTGTCTTGGAGGTGACGG....................................................................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................GGCATATCTTGGAGCTGGGAA............................ 21 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................GAAAGACGATCCAAGTGAGGGT......... 22 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................GGCACATCTTGGAGCTGGG.............................. 19 0 1 1.00 1 0 1 0 0 0 0
............ATTTTGGCTTGGAGGTGACG........................................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
..................GCTTGGAGGTGACGGAAAATCAGAA............................................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
...........GTTTTTGGCTTGGAGGTGACGGAAAATC................................................................................................................................................................................................................................................................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0
..........................GTGACGGAAAATCAGAATTTTACGAGG................................................................................................................................................................................................................................................................................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................CATCTTGGAGCTGGGAAAGACGATC.................... 25 0 1 1.00 1 0 0 0 1 0 0
................TGCCTTGGAGGTGACGGAAAATCAGA.............................................................................................................................................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................................CTTTAGTCAGCGGACAGGC........................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0
.................GGGTTGGAGGTGACGGAA..................................................................................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0
..................GCTTGGAGGTGACGGAAAATCAG............................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
.................GGCTTGGAGGTGACGGAA..................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................................................................................ATCTTGGAGCTGGGAAAGAC........................ 20 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................ACATCTTGGAGCTGGGAAAGACGATC.................... 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................GAAAGACGATCCAAGTGAGG........... 20 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................GCACATCTTGGAGCTGGG.............................. 18 0 1 1.00 1 1 0 0 0 0 0
..............TTTGGCTTGGAGGTGACGG....................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................GACGATCCAAGTGAGGGTCAACTCC.. 25 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGTGAGGGTCAACT.... 19 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................ACCAAGCGAGGGTCAACGCCC. 21 3 2 0.50 1 0 0 0 0 1 0
...............................................................................ACAGACGGACAGGCGGATA...................................................................................................................................................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................TTGAAAAAACTCCAAAAACCA.................................................................................... 21 2 3 0.33 1 0 1 0 0 0 0
...........GATTTTGGCATGGAGGTGG.......................................................................................................................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 1 0
.........................................................................................AGGCAGATAGGCTGAAAGGCG.......................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 1
.GGACGACAATGAGTTTGGCT................................................................................................................................................................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0 0
..........................................................................AGCGGACAGACGGACGGGCGG......................................................................................................................................................................................................................................................................................................... 21 1 7 0.14 1 0 0 1 0 0 0
CGTACGGCAAGTACTTTGGC.................................................................................................................................................................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................TAAAAAAACACCAAAAACCAT................................................................................... 21 2 11 0.09 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................CCACCTAAAAAAACACCAAAA........................................................................................ 21 2 18 0.06 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................CTTCTTGAAAAAACACCA........................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................ACAAGCGGACAGGCGGACAGT.................................................................................................................... 21 1 20 0.05 1 0 0 1 0 0 0
.................................................................................AGACGGACATGCGGAGGGGC................................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................GAGAAGCGGAGAGGCGGAC....................................................................................................................... 19 2 20 0.05 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................................................................................AGCAGGGAAAGACTACCC................... 18 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GCATGCCGTTACTAAAACCGAACCTCCACTGCCTTTTAGTCTTAAAATGCCATCCAAAACCAGATTTCACCTGATCGCCTGTCTGCCTGTCCGCCTATCCGCCTGTCCGCCTGTGTACCTGTTCAATAAAGTTGGATACTTGATACAATACTGAATCTGATCAAGATTCAATTACAGGAAATTTGTGAACGGGACTAATTTTTACTAAAATTAGAATTTTCAAAATTGAATTTTGAACTCAGTCGCCTGTCCGCCTGTTCGCCTGTCCGCCTGTCGGCCTGGAGGTGAACTTTTTTGTGGTTTTTTGTATAATTAAATATTAAATATAGGGATAAGAGTATCTCCGTGTAGAACCTCGACCCTTTCTGCTAGGTTCACTCCCAGTTGAGGGC
**************************************************((..(((((((((((...))))))))..)))..))(((..((.(((((.((......))((((((((((.........((((.....)))))))))...(((((((((.....))))))))).))))).........(((((..((((((((....))))))))....((((((((...))))))))..(((....))).))))).((((.(((..(((.....))).....))).))))...................................)))))))..))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V106
head
 M058
embryo
 M044
female body
.............................................................................................................................CTAAACTTGGATACTTGA......................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 1 0 0
.............................................................................................................................................................................................TGGGACTAAGTTTTACTACAAT..................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0
.......................................................................................................................................ATACAAGATACAATGCTGAAT............................................................................................................................................................................................................................................ 21 3 8 0.13 1 0 0 1 0
...........................................................................................................CGCCAGTGTACGTGTTC............................................................................................................................................................................................................................................................................ 17 2 14 0.07 1 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................AGAGATGGGGATAAGAGTA.................................................... 19 3 20 0.05 1 0 0 1 0
............................................................................................................................................................ATGGTCAAGATTCAATTAG......................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1
.............................................................................................................................CTAAACTTGGATACTTGAA........................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13334:1054776-1055167 + dan_2181 CGT-ACGGCAATGATTTTGGCTTGGAGGTGACGGAAAATCAGAATTTTACGGTAGGTTTTGGTCTAAAGTGGACTAGCGGAC------------------------------------------------------------------------A-------------GACGGACAGGCGGATAGGCGGACAGGCGGACACATGGACAAG-TTATTTCAACC---------------------------------------TATGAACTATGTTATGACTTAGACTAGTTCTAAGTTAATGTCCTTTAAACACTTGCCCTGATTA-------AAAATGATTTTAATC-------------------------------------------------------------------------------------------------TTAAAAGTTTTAA-----CTT------AAAACTTGAGTC-----------AGCGGACAGGCGGACAAGCGGACAGGCGGACAGCCGGACCTCCACTTGAAAAAACACCAAAAAACATATTAATTTATAATTTATATCCCTATTCTCATAGAGGCACATCTTGGAGCTGGGAAAGACGATCCAAGTGAGGGTCAACTCCCG
droBip1 scf7180000396571:315986-316201 + TAGTTTAT----------------------------------------------------GATTTA--ATAGACGGACAAGC------------------------------------------------------------------------C-------------AACGGACAGACGGACAGGCGGACAGACGGACACTCGGACATGTCTAT--CAATTATTGTCTGTAAGATCTGATTTTTTAAAAAATTGTTATACATTGTACTTT------------------------------------------------------GGCTT--------------TTCTAG-------------------ACT--------------------------GGG----TTTTAGTATCT---------------------GGGC-----------TTTGAAGA----AGA----GAGACA------------ACCTGAACGGACAGACGGACAAGCGGACAC----------------------------------------------------------------------------------------------------------------------TCTGACA
droKik1 scf7180000302351:194897-194966 - AGG--------------------------------------------------------------------------------------------------------------------------------------------------TGGACA-----GACGGACAGACGGACAGACGGACAGACGGACAGACGGACAGACGGACATGGCTATATC-----------------------------------------------------------------------------------------------------------GAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454040:591155-591354 + AAA--------------------------------------------------------------------------------------------------------------------------------------------------CGGACA-----AACGGACAGATGGACAGATGGACAGATGGACAGATGGACAGACGGACAAACGTACA--GA-------------------------------------------CGTATTTC------------------------------------------------------GATTCAGAT-----TGCTGATCAAGAATATATATTCTACTTTTGGGA--------------------------AGG----TTTCGGAAAGA---------------------TAAC-----------TTTTAAAA----TGAGACCCA---------AGTTTTCATAGAAACGGACAGACGGACGGATGGACAG------------------------------------------------------------------------------------------------------------------ACGGACAGACG
droEle1 scf7180000491201:1257657-1257787 + TGT-ACGAC-------------------------------------------------------------------------AATCGAATATGTTTTGCCAATGACAAATTTGTAGGAAATTACTGGCAGTTTTCGAGGGTTTCAGAGACGGACA-----AGCGGACATACGGACAAGCGGACATACGGACAAGCGGACATACGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAG
droRho1 scf7180000764074:687-914 - GA-----------------------------------------------------------------------CGGACAGAC------------------------------------------------------------------------A-------------GACGGACAGACGGACAGACGGACAGACGGACAGACGGACATGGCTATATC-----------------------------------------------------------------------------------------------------------AACTCAGGAGGTGATCCTGATCAAGAATATATATACT--TTATAGGGTCGGAGATGTCTCCTTCACTGCGTT---GCACACTTTTGACCAAAATTATAATACCCT-------------CTGCAAGGGTATAACAAGAGAG------AACGCTATAGTC-----------GGGTGCCAGACAGACGGACAGACAG----------------------------------------------------------------------------------------------------------------------ACGGACA
droBia1 scf7180000301506:529637-529723 + GTGGA--------------------------------------------------------------------CCGGCGGACAAGC--------------------------------------------------------------------GAATTTGGCGGACAAACGGACAGGCGGACAGGCGGACATACGGACAAGCGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATATAGACTGTATTAT---------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415357:10180-10413 + GA-----------------------------------------------------------------------CGGACGGAC------------------------------------------------------------------------G-------------GACGGACAGACGGACAGACGGACAGACGGACAGACGGACATGGCTAGATC-----------------------------------------------------------------------------------------------------------GACTCGTCTAGTGATGCTGATCAAGAATATATATACT--TTATGGGGTCGGAAACGTCTCCTTCAATGCGTT---GCAAACTTCTGACTGAAATCATAATACCCT-------------CTGCAAGGGTATAACGA----G------GACGGT--------ATTGAAACAGACATACAGACGGACAGACGGACAGACGGACAGACGGAC---------------------------------------------------------------------------------------------------------------
droEug1 scf7180000407600:76163-76208 - CG-----------------------------------------------------------------------------GAC------------------------------------------------------------------------A-------------GACGGACAGGCGGACAGGTGGACAGGCGGACACATGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA
dm3 chrX:21166930-21166994 - ATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTAATTT---TAGGACTATATCCTGGATTTGGGTAAAACGATACAGGTGCGCATCAACTCGCG
droSim2 x:19899286-19899352 - TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTAATTT---TAGGACTACATCCTGGAGCTGGGAAAAACGATCCAGGTGCGCATTAACTCGCG
droSec2 scaffold_8:3473940-3474006 - TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTAATTT---TAGGACTACATCCTGGATCTGGGAAAAACGATCCAGGTGCGCATTAACTCGCG
droYak3 X:20342659-20342727 - ATT--------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCTTCATTT---TAGGATTACATCCTGGAACTTGGCAAAACGATCCAGGTGCGCATCAACTCGCG
droEre2 scaffold_4690:17696289-17696390 - ATCTTTATT-------------------------------------------------------------------------TATCGTCTTTGCTCCTCCTTACGCATT----------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCATAATTT---TAGGCTTACATCCTGGATCTGGGAAGAACGATCCAGGTGCGCATCAACTCGCG
dp5 XL_group1a:9061069-9061114 + AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCTGGAGCTGGGCAGGACGATACAGGTGCGGATCAATTCGCG
droPer2 scaffold_8578:197-256 + CTGA-----------------------------------------------------------------------AG------------------------------------------------------------------------GGGACA-----GACGGACAGACGGACAGACGGACAGACGGACGGACGGACAGACGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA
droWil2 scf2_1100000000046:7143-7374 + GA-----------------------------------------------------------------------CGGACGGAC------------------------------------------------------------------------A-------------GACGGACAGACGGACGGACGGACGGACGGACGGACGGACATGGCTATTTC-----------------------------------------------------------------------------------------------------------AACTCGTCTCGTCGTGCTGATCAAGAATATATATACT--TTATATGGTCGAAAATGCTTCCTTCTATGCGTT---GCACACTTCTTACCAAAATTAATATACCCT-----------TTTTGCAAGGGTATAAAAA----T------GGCACC------------ATCAAACCGGACAGACGGACAGACGGACGGACGGACGGACGGAC---------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:7925316-7925366 - GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACATACTGGACCTGAGCGCATCCCTGCAGGTTTGGATAAACGCACG
droMoj3 scaffold_6462:38416-38655 - GGA----------------------------------------------------------------------CAGACGGAC------------------------------------------------------------------------A-------------GACGGACAGACGGACGGACGGACAGACGGACAGACGGACAGGGCCAAATC-----------------------------------------------------------------------------------------------------------AACTCAGCACGTCGCCCTGATCAAGAATATATATACT--TTATGGGGTCTGCCACGCCTCCTTCTGCCTGTTAACGAACATTTAAAAAAAAAATTGAAGTCTCTAGCTCTTATATCTTCTGA--------------------AATCGA---------CGCGTTCATACATACGGACAGACGGACAGACGGACAGACGGACAGACGGAC---------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:16398532-16398590 + AGG--------------------------------------------------------------------------------------------------------------------------------------------------CGGACA-----GGCGGACAGATGGACAGGCGGACAGGCGGACAGATGGACAGGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CGT-ACGGCAATGATTTTGGCTTGGAGGTGACGGAAAATCAGAATTTTACGGTAGGTTTTGGTCTAAAGTGGACTAGCGGAC------------------------------------------------------------------------A-------------GACGGACAGGCGGATAGGCGGACAGGCGGACACATGGACAAG-TTATTTCAACC---------------------------------------TATGAACTATGTTATGACTTAGACTAGTTCTAAGTTAATGTCCTTTAAACACTTGCCCTGATTA-------AAAATGATTTTAATC-------------------------------------------------------------------------------------------------TTAAAAGTTTTAA-----CTT------AAAACTTGAGTC-----------AGCGGACAGGCGGACAAGCGGACAGGCGGACAGCCGGACCTCCACTTGAAAAAACACCAAAAAACATATTAATTTATAATTTATATCCCTATTCTCATAGAGGCACATCTTGGAGCTGGGAAAGACGATCCAAGTGAGGGTCAACTCCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACGATCCAAGTGAGGGT.........2014.004000040
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGATCCAAGTGAGGGT.........1912.002000011
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACGATCCAAGTGAGGGT.........2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACATCTTGGAGCTGGG..............................1911.001010000
.............ATTTTGGCTTGGAGGTGACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...................GCTTGGAGGTGACGGAAAATCAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
...........................GTGACGGAAAATCAGAATTTTACGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTGGAGCTGGGAAAGACGATC....................2511.001100000
...................GCTTGGAGGTGACGGAAAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..................GGCTTGGAGGTGACGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGAGCTGGGAAAGAC........................2011.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTTGGAGCTGGGAAAGACGATC....................2611.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACGATCCAAGTGAGG...........2011.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATCTTGGAGCTGGG..............................1811.001000010
...............TTTGGCTTGGAGGTGACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATCCAAGTGAGGGTCAACTCC..2511.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGTGAGGGTCAACT....1911.001010000
................................................................................AC------------------------------------------------------------------------A-------------GACGGACAGGCGGATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCGGACAGGCGGACAGT....................................................................................................................21200.051000001
droBip1
TAGTTTAT----------------------------------------------------GATTTA--ATAGACGGACAAGC------------------------------------------------------------------------C-------------AACGGACAGACGGACAGGCGGACAGACGGACACTCGGACATGTCTAT--CAATTATTGTCTGTAAGATCTGATTTTTTAAAAAATTGTTATACATTGTACTTT------------------------------------------------------GGCTT--------------TTCTAG-------------------ACT--------------------------GGG----TTTTAGTATCT---------------------GGGC-----------TTTGAAGA----AGA----GAGACA------------ACCTGAACGGACAGACGGACAAGCGGACAC----------------------------------------------------------------------------------------------------------------------TCTGACASizeHit CountTotal NormTotal
No Reads
droKik1
AGG--------------------------------------------------------------------------------------------------------------------------------------------------TGGACA-----GACGGACAGACGGACAGACGGACAGACGGACAGACGGACAGACGGACATGGCTATATC-----------------------------------------------------------------------------------------------------------GAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAA--------------------------------------------------------------------------------------------------------------------------------------------------CGGACA-----AACGGACAGATGGACAGATGGACAGATGGACAGATGGACAGACGGACAAACGTACA--GA-------------------------------------------CGTATTTC------------------------------------------------------GATTCAGAT-----TGCTGATCAAGAATATATATTCTACTTTTGGGA--------------------------AGG----TTTCGGAAAGA---------------------TAAC-----------TTTTAAAA----TGAGACCCA---------AGTTTTCATAGAAACGGACAGACGGACGGATGGACAG------------------------------------------------------------------------------------------------------------------ACGGACAGACGSizeHit CountTotal NormTotal
No Reads
droEle1
TGT-ACGAC-------------------------------------------------------------------------AATCGAATATGTTTTGCCAATGACAAATTTGTAGGAAATTACTGGCAGTTTTCGAGGGTTTCAGAGACGGACA-----AGCGGACATACGGACAAGCGGACATACGGACAAGCGGACATACGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGSizeHit CountTotal NormTotal
No Reads
droRho1
GA-----------------------------------------------------------------------CGGACAGAC------------------------------------------------------------------------A-------------GACGGACAGACGGACAGACGGACAGACGGACAGACGGACATGGCTATATC-----------------------------------------------------------------------------------------------------------AACTCAGGAGGTGATCCTGATCAAGAATATATATACT--TTATAGGGTCGGAGATGTCTCCTTCACTGCGTT---GCACACTTTTGACCAAAATTATAATACCCT-------------CTGCAAGGGTATAACAAGAGAG------AACGCTATAGTC-----------GGGTGCCAGACAGACGGACAGACAG----------------------------------------------------------------------------------------------------------------------ACGGACASizeHit CountTotal NormTotal
No Reads
droBia1
GTGGA--------------------------------------------------------------------CCGGCGGACAAGC--------------------------------------------------------------------GAATTTGGCGGACAAACGGACAGGCGGACAGGCGGACATACGGACAAGCGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATATAGACTGTATTAT---------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GA-----------------------------------------------------------------------CGGACGGAC------------------------------------------------------------------------G-------------GACGGACAGACGGACAGACGGACAGACGGACAGACGGACATGGCTAGATC-----------------------------------------------------------------------------------------------------------GACTCGTCTAGTGATGCTGATCAAGAATATATATACT--TTATGGGGTCGGAAACGTCTCCTTCAATGCGTT---GCAAACTTCTGACTGAAATCATAATACCCT-------------CTGCAAGGGTATAACGA----G------GACGGT--------ATTGAAACAGACATACAGACGGACAGACGGACAGACGGACAGACGGAC---------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CG-----------------------------------------------------------------------------GAC------------------------------------------------------------------------A-------------GACGGACAGGCGGACAGGTGGACAGGCGGACACATGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACASizeHit CountTotal NormTotal
No Reads
dm3
ATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTAATTT---TAGGACTATATCCTGGATTTGGGTAAAACGATACAGGTGCGCATCAACTCGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACGATACAGGTGCGCATCAACTCG..2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATTTGGGTAAAACGAT.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGGTGCGCATCAACTCG..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGTAAAACGATACAGGTG..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATACAGGTGCGCATCAACTCG..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTAAAACGATACAGGTG..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATATCCTGGATTTGGGTA............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCTGGATTTGGGTAAAACG.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TAGGACTATATCCTGGATTTGGGT.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACGATACAGGTGCGCATCAACTC...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAACGATACAGGTGCGCATCA.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATATCCTGGATTTGGGTAAAAC........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATCCTGGATTTGGGTA............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGTAAAACGATACAGGTG..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGTAAAACGATACAGGTGCGC...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCTGGATTTGGGTAAAAC........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGATACAGGTGCGCAT.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTAAAACGATACAGGTGCGC...........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCTGGATTTGGGTAAAACGA......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTAATTT---TAGGACTACATCCTGGAGCTGGGAAAAACGATCCAGGTGCGCATTAACTCGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTACATCCTGGAGCTGGG..............................2111.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGGGAAAAACGATCCAGGT...............2311.00100010000000000000
droSec2
TTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTAATTT---TAGGACTACATCCTGGATCTGGGAAAAACGATCCAGGTGCGCATTAACTCGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCTGGATCTGGGAAA...........................1911.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGGAAAAACGATCCAGGTGCGC...........2611.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCTGGATCTGGGAAAAACGAT.....................2511.0010010
droYak3
ATT--------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCTTCATTT---TAGGATTACATCCTGGAACTTGGCAAAACGATCCAGGTGCGCATCAACTCGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAACGATCCAGGTGC.............1913.00300300000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAACGATCCAGGTGCGCATC........2412.00200000020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAACGATCCAGGTGCGC...........2011.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAACGATCCAGGTGCG............2011.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATCCAGGTGCGCATC........1911.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGATCCAGGTGCGCATCAA......2211.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGATCCAGGTGCGCATC........2111.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGCAAAACGATCCAGGTGCGC...........2411.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAACGATCCAGGTGCGC...........2111.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACATCCTGGAACTTGGC.............................2011.00100000010000
droEre2
ATCTTTATT-------------------------------------------------------------------------TATCGTCTTTGCTCCTCCTTACGCATT----------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCATAATTT---TAGGCTTACATCCTGGATCTGGGAAGAACGATCCAGGTGCGCATCAACTCGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAAGAACGATCCAGGTGCGC...........2413.0032000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGATCCAGGTGCGCATCAACTCGC.2812.0020100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATCCTGGATCTGGGAAGAACGATC....................2711.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACATCCTGGATCTGGGAAGA..........................2411.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGATCCAGGTGCGCATCAACT....2511.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGATCCAGGTGCGC...........1811.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGATCCAGGTGCGCATCAACTCG..2711.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAAGAACGATCCAGGT...............2011.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACATCCTGGATCTGGGA.............................2011.0010000010
dp5
AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCTGGAGCTGGGCAGGACGATACAGGTGCGGATCAATTCGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAGCTGGGCAGGACGAT.....................2111.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGATACAGGTGCGG...........1811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAGGTGCGGATCAATTCGC.2311.0010100000000
droPer2
CTGA-----------------------------------------------------------------------AG------------------------------------------------------------------------GGGACA-----GACGGACAGACGGACAGACGGACAGACGGACGGACGGACAGACGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................CAGACGGACAGACGGACAGACGGACGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.102200000
.......................................................................................................................................................................AGACGGACAGACGGACAGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droWil2
GA-----------------------------------------------------------------------CGGACGGAC------------------------------------------------------------------------A-------------GACGGACAGACGGACGGACGGACGGACGGACGGACGGACATGGCTATTTC-----------------------------------------------------------------------------------------------------------AACTCGTCTCGTCGTGCTGATCAAGAATATATATACT--TTATATGGTCGAAAATGCTTCCTTCTATGCGTT---GCACACTTCTTACCAAAATTAATATACCCT-----------TTTTGCAAGGGTATAAAAA----T------GGCACC------------ATCAAACCGGACAGACGGACAGACGGACGGACGGACGGACGGAC---------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGACGGACGGA........................................................................................................................18200.8016000016
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACGGACGGACGGACG......................................................................................................................20200.10200200
..........................................................................................................................................................................CGGACAGACGGACGGACGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10220000
......................................................................................................................................................................................................................................................................................................................................................................TACT--TTATATGGTCGAAAATGCTTCC..................................................................................................................................................................................................................................................................26200.10201010
........................................................................................................................................................................................................................................................................................................................................................................................AAATGCTTCCTTCTATGCGTT---....................................................................................................................................................................................................................................................21200.10202000
.........................................................................................................................................................................................................................................................................................................................................................................T--TTATATGGTCGAAAATGCTT....................................................................................................................................................................................................................................................................21200.05100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGACAGACGGACGGACGGAC.......................................................................................................................24200.05110000
...............................................................................................................................................................................................................................................................................................................................................................................TATGGTCGAAAATGCTTCCTTCTA.............................................................................................................................................................................................................................................................24200.05101000
........................................................................................................................................................................GACGGACAGACGGACGGACGGACGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACAGACGGACGGACGGACGGA....................................................................................................................24200.05110000
..................................................................................................................................................................................................................................................................................................................................................................TATATACT--TTATATGGTCGAAAATG.......................................................................................................................................................................................................................................................................25200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACGGACAGACGGACGG.............................................................................................................................20200.05100010
...................................................................................................................................................................................................................................................................................................................................................................ATATACT--TTATATGGTCGAA...........................................................................................................................................................................................................................................................................20200.05101000
.........................................................................................................................................................................................................................................................................................................................................CGTCTCGTCGTGCTGATCAAGAATAT.................................................................................................................................................................................................................................................................................................26200.05101000
GA-----------------------------------------------------------------------CGGACGGAC------------------------------------------------------------------------A-------------GACGGACAGACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100
.........................................................................CGGACGGAC------------------------------------------------------------------------A-------------GACGGACAGACGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100
droVir3
GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTACATACTGGACCTGAGCGCATCCCTGCAGGTTTGGATAAACGCACGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACTGGACCTGAGCGC...........................1911.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGAGCGCATCCCTGCAG.................2111.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCGCATCCCTGCAGGT...............2011.001000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGAGCGCATCCCTGCAGG................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACTGGACCTGAGCGCATCCCTGC...................2711.001000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCGCATCCCTGCAGGTTTGGAT.........2611.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGAGCGCATCCCTGC...................1911.001000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACTGGACCTGAGCGCAT.........................2111.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATACTGGACCTGAGCGCATCC.......................2511.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATACTGGACCTGAGCGCATCCC......................2611.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
GGA----------------------------------------------------------------------CAGACGGAC------------------------------------------------------------------------A-------------GACGGACAGACGGACGGACGGACAGACGGACAGACGGACAGGGCCAAATC-----------------------------------------------------------------------------------------------------------AACTCAGCACGTCGCCCTGATCAAGAATATATATACT--TTATGGGGTCTGCCACGCCTCCTTCTGCCTGTTAACGAACATTTAAAAAAAAAATTGAAGTCTCTAGCTCTTATATCTTCTGA--------------------AATCGA---------CGCGTTCATACATACGGACAGACGGACAGACGGACAGACGGACAGACGGAC---------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................T--TTATGGGGTCTGCCACGCCTCC..................................................................................................................................................................................................................................................................23201.35272700000
......................................................................................................................................................................................................................................................................................................................................ACTCAGCACGTCGCCCTGATCAAGA.....................................................................................................................................................................................................................................................................................................2590.111100000
........................................................................................................................................................................................................................................................................................................................................................................................CCACGCCTCCTTCTGCCTGTTAA.....................................................................................................................................................................................................................................................23180.061100000
.......................................................................................................................................................................................................................................................................................................................................................................ACT--TTATGGGGTCTGCCACGCCTCC..................................................................................................................................................................................................................................................................25200.051100000
.........................................................................................................................................................................................ACGGACAGACGGACAGACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100
.......................................................................................................................................................................................GGACGGACAGACGGACAGACGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000
.............................................................................................................................................................................................ACAGACGGACAGACGGACAGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
droGri2
AGG--------------------------------------------------------------------------------------------------------------------------------------------------CGGACA-----GGCGGACAGATGGACAGGCGGACAGGCGGACAGATGGACAGGCGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:04 AM