ID:

dan_2174

 Coordinate:

scaffold_13334:918919-919069 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.9 -14.8 -14.8

Flybase annnotation

CDS [Dana\GF21834-cds]; exon [dana_GLEANR_5732:1]; intron [Dana\GF21834-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CACCACCTCCTCCAACTCCTCCTCCAACAACTCCACCAACAACAATAGCGGTAATATAACTACCCAAGGATATCCAATCTCTAAGCTTAAGTAGTTTCTGGCTTAAAAAAAAATGGGTTAAAAAATTGTAATTGGCAAAAAAAAAAAAAAAAAAGAAAGAAACTAAAAAATAAACTGTCACTAGTTTTAATCGCTTTAGCCTTGATTTAGTTGTCAGGCAGGAAGGCAGGTGTCCTTTGGGATTCCTGTCA
**************************************************.................((((.....))))....(((.(((((((((((((((((........))))))).....((((.....))))....................)))))))......((((((....))))))......))).))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V105
male body		 V055
head
 V039
embryo
 V106
head
........................................................................................................................................................AAGAAAGAAACTAAAAAATA............................................................................... 20 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................AAAAAAAAAAAAAAAAGAAAGACACTAAAAAA................................................................................. 32 1 1 1.00 1 0 0 1 0 0
.............................................................................................................................................................................................................................GAAGGCAGGTGTCCTTTGGGATT....... 23 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................................................................AGGAAGGCAGGTGTCCTTTGGGATTCC..... 27 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................AAAAAAACAAAAAAAAAAGAAAGAAACC....................................................................................... 28 2 2 0.50 1 1 0 0 0 0
...............................................................................................................................................AAAAAACAAAAGAAAGAAACT....................................................................................... 21 1 2 0.50 1 1 0 0 0 0
......................................................................................................................................................AAAAGACAGAAACTAAAAAA................................................................................. 20 1 3 0.33 1 0 0 0 1 0
............................................................................................................................................GAAAAAAGAAAAAAGAAAGAAACT....................................................................................... 24 2 5 0.20 1 1 0 0 0 0
.............................................................................................................................................AAAAAATACAAAAGAAAGAAACT....................................................................................... 23 2 6 0.17 1 1 0 0 0 0
..............................................................................................................................TGTAATTGGCAGAGTAAAAAA........................................................................................................ 21 3 13 0.15 2 0 2 0 0 0
................................................................................................................................................AAAAAAAAAAGAAAGAAACC....................................................................................... 20 1 20 0.10 2 2 0 0 0 0
...................................................................................................................................................GAAAAAAGAACGAAACTAA..................................................................................... 19 2 20 0.10 2 2 0 0 0 0
..............................................................................................................................................................................................................................AAGGCAGGTGTCCTAATGG.......... 19 3 10 0.10 1 0 0 1 0 0
...............................................................................................................................................AAAAAAAAAAAGAAAGAAA......................................................................................... 19 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................AAAAAAAAAAAAAAAGAAACTAAAAA.................................................................................. 26 1 11 0.09 1 1 0 0 0 0
.........................................................................................................................................AAAAAGAAAAAAAAAAAGAAAGA........................................................................................... 23 1 13 0.08 1 1 0 0 0 0
...........................................................................................................................................AAAAAAAAAAAAAAAGAAAGAA.......................................................................................... 22 0 13 0.08 1 1 0 0 0 0
..................................................................................................................................................ATAAAAAAGAACGAAACTAAGAA.................................................................................. 23 3 14 0.07 1 0 1 0 0 0
.........................................................................................................................................AAAAAAAAAAAAAAAAAGAAAGAAAG........................................................................................ 26 1 18 0.06 1 1 0 0 0 0
.................................................................................................................................AATTAGCAAAAAAAAAGAAAAAAA.................................................................................................. 24 2 20 0.05 1 1 0 0 0 0
..........................................................................................................................................AAAAAAAAAAAAAAAAGGAAGAACC........................................................................................ 25 2 20 0.05 1 1 0 0 0 0
............................................................................................................................................AAAAAAAACAAAAAGAAAGA........................................................................................... 20 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................AAAAAAGAAAAAAAAAGAAAGA........................................................................................... 22 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................................AAAAAAAAAACAAGAAAGAAACGA...................................................................................... 24 2 20 0.05 1 1 0 0 0 0
........................................................................................................................................AAAAAAAAGATAAAAAAAGAAAGAA.......................................................................................... 25 2 20 0.05 1 1 0 0 0 0
..................................................................................................................................................AAAAAAAAGAAAGAAACC....................................................................................... 18 1 20 0.05 1 1 0 0 0 0
.................CATTTTCCAACAACTCCACCA..................................................................................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0
..............................................................................................................................................AAAAAAAAAAAAGAAAGAA.......................................................................................... 19 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................AAAAAAGAAAAAAGAAGGAAAC........................................................................................ 22 2 20 0.05 1 1 0 0 0 0
..................................................................................................................................ATTGGCAAAAGTAAAAAGAAAA................................................................................................... 22 3 20 0.05 1 0 0 0 0 1
................................................................................................................................................AAAAAAAAAAGAAAGAAA......................................................................................... 18 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................AAAAAAAAAAAAAAAAGAAAG............................................................................................ 21 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................AAAAAAAGAAAGAAACCA...................................................................................... 18 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................................AAAAAAAAAGAAAGAAACC....................................................................................... 19 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................AATTGGCAACAACAAAAAAAAAAAA................................................................................................. 25 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GTGGTGGAGGAGGTTGAGGAGGAGGTTGTTGAGGTGGTTGTTGTTATCGCCATTATATTGATGGGTTCCTATAGGTTAGAGATTCGAATTCATCAAAGACCGAATTTTTTTTTACCCAATTTTTTAACATTAACCGTTTTTTTTTTTTTTTTTTCTTTCTTTGATTTTTTATTTGACAGTGATCAAAATTAGCGAAATCGGAACTAAATCAACAGTCCGTCCTTCCGTCCACAGGAAACCCTAAGGACAGT
**************************************************.................((((.....))))....(((.(((((((((((((((((........))))))).....((((.....))))....................)))))))......((((((....))))))......))).))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V055
head
 M044
female body
 V039
embryo
 V106
head
........GGAGGTTGAGGAGGAGGTT................................................................................................................................................................................................................................ 19 0 2 0.50 1 1 0 0 0 0
................................................................GTTACTATAGGTTAGACATT....................................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0
....................................................................CGATAGGTTAGAGGTTCG..................................................................................................................................................................... 18 2 7 0.43 3 2 0 1 0 0
.......AGGAGGTTGAGGAGGAGG.................................................................................................................................................................................................................................. 18 0 7 0.14 1 0 0 1 0 0
.........................TTGTTGAGGTGGTTGATT................................................................................................................................................................................................................ 18 2 17 0.06 1 0 1 0 0 0
................................GGTGGTTGGTGTTTTCGACA....................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1
........................................................................................................................................TTTTTTTTTTTTTTTTTTCT............................................................................................... 20 0 20 0.05 1 1 0 0 0 0
..........................TTTTGAGGCGGTTGTGGTTA............................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 1 0 0
................ATGAGGACTTTGTTGAGGT........................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0
......GATGAGGTTGACGAGGAGG.................................................................................................................................................................................................................................. 19 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13334:918869-919119 + dan_2174 CA--CCACC-TCCTCCA-ACT-------------------------------------------------------------------------------------------CCTCCTCCAACAA------------------------------------------C---TCCACCA-----ACA---ACAATAGCGGTAAT-------------ATA--------------ACTAC-------------------------------------------------------------------------------------CCA----AGG-----------------------------------------------------------ATATCCAATCTCTAAGCTTAAGTA---------GTTTCTGGCTTA----------------------------A----------------------------------------------------------------------------------------------------------AA-AAAAATGG---------GT-TAA-------AAAATTGTAATTG-----G----------------------------CAA-----------AAAA------------------AAAAAAAAAA-------------------------------AAGA---AA---------------------------G-A----AAC-TAAAAAA---------------TAA------------------ACTGTCACTAGTTTTAATCG-------------CTTTAGCCTTGATTTAGTTGTCAGGCAGGAAGGCAGGTGTCCTTTGGGATTCCTGTC---------------A
droBip1 scf7180000396733:560434-560651 + CA--ACAAT-TCAAACA-ATC-------------------------------------------------------------------------------------------ACACCACCAACAA------------------------------------------T---AATAGCG--------------------GTAAT------------------------------G---C-------------------------------------------------------------------------------------CCC----AGG-----------------------------------------------------------ATAACTAAATCCTAAAAAAAACAAAATACTATTATTTGCGGCTAAAAAGGGTATTTTTTA------ATATTAGTATTGT-----------------------------------------------------------------------------------------AATTG----------------------------------------------------------GCAACAACAACAAAAAAAA------------------------------------------AAAT----TGTA---------------------------------------------------------------------------AA-----TT-------------------GT------------------T------------ATTTTAGAATAAGACGAAATATATAGCCTGGATTTAGTTGTCACAC--G---------------------TAGTGCC---------------T
droKik1 scf7180000302441:609301-609523 - CA--CCGTT-AACGGCA-ACA-------------------------------------------------------------------------------------------ACAATTCGCACGT------------------------------------------C---GACGCTC-----ACAACGGCAGAAGCAGCAGC------------------------------GCCAG-------------------------------------------------------------------------------------CCGAAGACAC-----------------------------------------------------------ATAACGGAGCTCTGTA----------------------------------------------------------------------------------------AAATGGGCGTTAAGAAGCATATCAGCGAAACAC----------------------------------------CATGTGAGTAAATA---------CA-GCA-------TAAATAAAAAACA-------------------------A----------ACTAAAAACATACTTAAA-------------AA-----AAAAAA-------------------------------AAGA---A---------------------------ACAAACAAA-----AACAG----------------------------------------ACGCTATTTTTGA-------------------------------------------------------------------------------TTAACTTGGC
droFic1 scf7180000453807:1030449-1030615 + ACTAGC----AACAACA-CAG-------------------------------------------------------------------------------------------GCAGTAGGA------------------GAATTTATAATAAGTAACTCTGCGGCTGC------------------------------------------------------------------------------------------------------------------------------------------------------TGCT----------------------------------------------------------------------------------------------------------------TCG----------------------------A----------------------------------------------------------------------------------------------------------TC-GAGAGTTG---------CG-CAAAAAAAAGCAAA--------AAAAAAAGA----------------------------A------------------------------AAA----AAGC--GAG------------------------------GA---G---------------------------AAAAACAAA-----AGCAACTGCCGCAAATCTTCCAC--------TTAATTATAAA----------------------------------------CTTATTTA----------------------------------------------------TTTGG
droEle1 scf7180000490564:229229-229396 + AG--ACAAC-AACCGCA-ATC-------------------------------------------------------------------------------------------CCGCCACACACAC------------------------------------------A---AACGCCC-----GAA---ACACTCGCAGACAT-------------CCG--------------CACAC-------------------------------------------------------------------------------------CCA----CA-----------------------------------------------------------------------------CACACACAAGTTCACTACGTCACGCACA--------------------------------------------------------------------------------------------AAC--------ACAAACCATGTCTGCCAATA--------------------------AGTTTGC------------------------------ACA--------------------------AAA-----------AAAA--------------AAAA----TGAAAA-------------------------------AGGA---A---------------------------AC-A----AAC-AAAAAAA--------------------------------------------------------TAGA----------------------------------------------------------------------------------
droRho1 scf7180000779318:129229-129437 - CA--ACATT-ACATACA-ACA-------------------------------------------------------------------------------------------GCAACAATAGCATACAAACCAGCAACAACAGCAGTAATATAGC-----------------------------------CAGAAGCAGCAGC------------------------------AAC-------------------------------------------A-------CCAAGAACAACA--------------ATTGCAGCA-------------------------------------------------------------------------------------------------------ATATCACC--------------------------------------------------------------------------AGAAAACACACCAGC------------------AA--------------------------------------------------------------------------------------------------------------CAA-----------CATCACCA------------------ATAATG-------------------------------TACA---AAAA-------AAAACAAAAAAAAACA---------A-----------------------GCTAC------------------A----CATTGGCGACAATCG-------------CTTTTGC-TCAATGCATTT-------------------------------------------------GTCAG
droBia1 scf7180000302075:2368769-2368915 + AC--CGATT-CCCAGCT-TCA------------------------------------------------------------------------------------------GACTTCAGTGGC------------------------------------------------------C----AACA---GCCAG--------------CTAAATATCCA--------------C-----------------------------------------------------------------------------------------------GTTC----------------GTGC-----------------------------------------GT--------------------------------------------------CGGTTTTTTGTGGCCAAATCGGTGC-----------------------------------------------------------------------------------------GGC----------------------------------A----------GAAAAT--------------------------AAATATCACACACAA-----------CAAAAAAA------------------AAAGAA-------------------------------AAGA---AA---------------------------T-A----GAA-TCATAAC--------------------------------------------------------AAAA----------------------------------------------------------------------------------
droTak1 scf7180000410451:13995-14160 + GC--CCAAC-TCA-CCG-CCC---ACGCCAC--------------------------------------------------------------------------------------ACGAGCAG---------------------------------------------C------A-----GGA---GC-------------------------------------------------------------------------------------------------------------------------------------AGAAGGTGA-----------------------------------------------------------GTGTCTAAATCTTATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------CCAAAATGATTTTAAAATAAAA-----------------------------------------------------------------------AAA----TGTTGA-------------------------------AGAA---T---------------------------TC-A----TTC-TAAATAT-------------TATAAAACAATTATAAAATCTAAA----C--------------AATA--------TTTAAAA-------------------C--T---------------------CTG----------CTCGTTTTAA
droEug1 scf7180000409095:477919-478120 + CT--TCAAC-TTCAACT-GCA-------------------------------------------------------------------------------------------GCAGCAACAACAG------------------------------------------T---GACAAAA------GG---GCAATTA--------------------------------------------------------------------------------------------------------------------------------------AGT-----------------------------------------------------------AGGCCCAAGATCTAGGCAAAAAGA------------------------------------------------------------------GTTAAGAGCCTCTAAGATGAGCGACGGGGTTAAGGCAATCAGATTTG----------------------------------------CTTGT--------------------------------AAA--------TTGAAAAGA----------------------------A------------------------------TTA----AAGT--TAA------------------------------TA---A---------------------------GAAAAGATA-----A--------------------------ACTTTAAAGTTTAAA---------------------------------------------------------C--T---------------------TTGAATATTGAAATCTAGTTAGC
dm3 chrX:9164765-9164939 - CA--GGAGC-AACAGCA-ACT------------------------------------------------------------GCAATTGAAGCCACATCATCTGCAGCAACT-TCAACTTCAACTG------------------------------------------T---T------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAAAAGA-----------------------------------------------------------AGGCCCAAATACCACAGAAAACTCAAATTATATACC------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC------------------------------AGA--------------------------AAA---------------------------------A------------AACATAGATTTGTAGTCCCCTAATCATAG---CAAG--------------------------AAC-----TA-ACA-ATAAA--------------------------------------------------------CTGA----------------------------------------------------------------------------------
droSim2 3r:15722743-15722954 + CA--CCACC-ACCA-CTAC-CACCACAA--CTACAACAACAACAACAACCAGTACAAGCACCAACAACAACATCAACAACAACAACAAGAACCTCATCGACGGCGTCAATT-GCGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------ATGGCTGCCATAAATACGGTAAGTACGCGACATCATC----------------------------------------------------------------------------------------------------------------A----------------------------A----------------------------------------------------------------------------------------------------------CC-AAATAATG---------CT-AAAATATAATAAAA--------TAAAAGGAA----------------------------A------------------------------GAA----AAGC--AAA-----------------------------GAAAAG-------------------------------A----A-----AATAA--------------------------------------------------------AAGA----------------------------------------------------------------------------------
droSec2 scaffold_68:56829-56988 - CA--TCATC-TGCAGCA-ACT-------------------------------------------------------------------------------------------TCAACTGCAGCTG------------------------------------------T---TGCAGAA-----ACA---GCAGTTGCACCAGC-------------------------------------------------------------------------------------------------------------------------AGCAGAAGA-----------------------------------------------------------ATGCCCAAATCCCACAGAAAACTGAAATTATCTACC-------------------------------------------------------------------------------------------------------------------------------------------TGCAGAA---------AA-------------------------------------------------------------------------------------------------------A------------GCCATAGATTTGTAGTCCTCTAATCATAG---CAAA--------------------------AAC-----TA-ACA-ATAAA--------------------------------------------------------CTAA----------------------------------------------------------------------------------
droYak3 X:12592124-12592305 - CA--GCAAC-TACAGCA-CCA-CCGTGGCGT--------------------------------------------------------------------------------------ATGCGTAA---------------------------------------------T------AAGCGAACA---ACAAT--------------GTGAACATGAG--------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATATCATCAA----------------------------------------------------------------------------------------------GTTACGACCATCCAATTTCAGGGCTAGATCATAAAATATATCTAGC-----------CTTTAAA---------AAAATTTTGG------------------------------ATA--------------------------AAA--------------------------------A----CATC--AAA-----------------------------CTAAAGA----------AACTCA------------------GA-----AT-------------------AA------------------G------------CCTTTAAAATA----------------------------------------------------------------------------------
droEre2 scaffold_4770:931491-931671 - CT--GATTT-CCCC-TTGC-CATTACCC--TTTGAAAGCCAAA----------------------------------------------------------------------------------------------------------------------------------CACAC-----ACT-----------------------------------------------------------------------------------------------------------------------------------------------------GCGCTCAAAATAATATCTTTTACATTACATTAAATAATGAAAAAGAACCAGTTAACTA-----------------------------------------------------------------ACTCAAGTAGTGTAGCTGCAAGAAAATAACAAGTCCCAAAA---------------------------------------------------------------------------------------AGATTG----------------------------------------------------------------------------------------------------AAAAAA-------------------------------TTCA---AA--AAAATAA----------------AG--C----T-----GTTAA--------------------------------------------------------CTGT----------------------------------------------------------------------------------
dp5 XR_group6:8981994-8982186 + CA--GCAGC-AACAACA-ACA-------------------------------------------------------------------------------------------ACAACAACAACAC------------------------------------------C---ATCACCA-----TCA---GCAATCATCGCAGC------------------------------CCC-----------------------------------------------------------CA-----------------------------C---AAAATGTGCTCAGCATAGTGAGT-----------------------------------------GT--------------------------------------------------TTTTTTTTTTTGGCAAAGGCAAAGC-----------------------------------------------------------------------------------------AGCCACCAACAAAA---------AA---------AAAATTATAATAAAATCAACAACA-----G----------------------------CAG-----------AAAA------------------A------------AATATAAAA--------------AA---A---AAGA---------------------------AA-A----CAC-TAAAAAA--------------------------------------------------------TAGA----------------------------------------------------------------------------------
droPer2 scaffold_24:700971-701150 - AA--GCAACAACACACC-ACA------------------------------------------------------------------------------------------GACAACAACCGC------------------------------------------------------A--------------------ATCCCGCCACACTAACACACACACACACACCCAAACAT-------------------------------------------G-------GCAATGGCTACG--------------GCTACGGCT-------------------------------------------------------------------------------------------------------ACGTCACGCACA--------------------------------------------------------------------------------------------AACACAAAAACAAAAACAATGTCTGCCAATA--------------------------AGTTTGC------------------------------AAA--------------------------AAA-----------GGAA---------------AAA----AAAA---------------------------------A---AAGG--------------------------AAA-----AA-A----T-------------------GA------------------AA---CG-------------TTAC----------------------------------------------------------------------------------
droWil2 scf2_1100000004909:9548218-9548381 + AA--CAACC-TACTACT-ACT-------------------------------------------------------------------------------------------ACTACTACTACTA------------------------------------------C---TACAACA-----ACA---ACAACAACA---AT-------------CCA----CATAGTTTA-ACTGG-------------------------------------------------------------------------------------CGA----TGG-----------------------------------------------------------AGTTCAAACTTCAAAGAG------------------------------------------------GCAATTACTG-----------------------------------------------------------------------------------------------------------AGTAATGA---------CT-GCA-------AAAATCCTAAATA------------------------------------A-----------CAAA---------------TAACAAACAGA------------------------------------A---A---------------------------TT-A----TAT-AAAAACC--------------------------------------------------------AAAA----------------------------------------------------------------------------------
droVir3 scaffold_12970:6439346-6439541 + CA--ACAAC-TTCAACA-GCA-------------------------------------------------------------------------------------------GCAACAACAACAACTTCAGCAGCAGCAGCAGCAACAACAACAACAGCTTCAGCTGC-----------------------------------------------------------------TCT-------------------------------------------A-------TCAGCAGCAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGC-----------------------------------------------------------------------------------------AGC----------------------------------A----------------------------GCAATGACAAAAGAAGAAACCGCAAACAA-----------CAACAACG------------------AAAAAA-------------------------------AAGA---AACA-------AACACACAAGAAAGTT---------A-----------------------TCAAC--------TAATTGATAAA---------------------------------------------------------C--G---------------------CTGCATA-----------CTTAA
droMoj3 scaffold_6680:6345233-6345436 - CA--GCAAT-TGCAGCA-GCC-------------------------------------------------------------------------------------------ACAGCAACAGCAA------------------------------------------C---AACAGCA-----GCA---GCAGAAGCAGCAAC------------------------------ATCATTATCAACTTCATAATGAGCATTGATTGAAGCTAACTGTTGCACTTCTGCTTGGCTGCTG-----------------------------C--------------------------------------------------------------------------------------------------------------AAAAAGTGTTTGAAA------TTAAAAGCTGTGC-----------------------------------------------------------------------------------------AGCCAACAA----------------------------------------------------------------------------------------------------AAACAAAAAAAGGGAAAAA----TAAA--GA-----------------------------G---AAGA---------------------------AA-AATAGA-----AAAAA--------------------------------------------------------CTGT----------------------------------------------------------------------------------
droGri2 scaffold_14906:8318006-8318189 + CA--CAAT--AATGACA-ACA-------------------------------------------------------------------------------------------GCATCAACAACGG------------------------------------------TGGCAGCAACA-----ACA---GCGGAAACAACAAC------------------------------AACAATGCCAA--------------------------------------------------------------------------------------------------------------TAAAGATGCAATCGATGG-----------------------CAGAAACTCAAATTG------------------------------------------------GTAAGAGCCGTGC-----------------------------------------------------------------------------------------AGCTTATGGTATTT--------------------------------AAA--------AATAAAAGA----------------------------A------------------------------AAA----AGAC--AAAAAAAA-----------------------AAAA---GA--AAAGA-------------------AA-T----TA--------------------------------------------------CG-----------------------------------------------------------------------------------------TTAGCTTTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CA--CCACC-TCCTCCA-ACT-------------------------------------------------------------------------------------------CCTCCTCCAACAA------------------------------------------C---TCCACCA-----ACA---ACAATAGCGGTAAT-------------ATA--------------ACTAC-------------------------------------------------------------------------------------CCA----AGG-----------------------------------------------------------ATATCCAATCTCTAAGCTTAAGTA---------GTTTCTGGCTTA----------------------------A----------------------------------------------------------------------------------------------------------AA-AAAAATGG---------GT-TAA-------AAAATTGTAATTG-----G----------------------------CAA-----------AAAA------------------AAAAAAAAAA-------------------------------AAGA---AA---------------------------G-A----AAC-TAAAAAA---------------TAA------------------ACTGTCACTAGTTTTAATCG-------------CTTTAGCCTTGATTTAGTTGTCAGGCAGGAAGGCAGGTGTCCTTTGGGATTCCTGTC---------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGA---AA---------------------------G-A----AAC-TAAAAAA---------------TA.............................................................................................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCAGGTGTCCTTTGGGATT......................2311.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGGCAGGTGTCCTTTGGGATTCC....................2711.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA-------------------------------AAGA---AA---------------------------G-A----AAC-C....................................................................................................................................................20200.102020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA-------------------------------AAGA---AA---------------------------G-A----AA.......................................................................................................................................................19200.102020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------------AAAAAAAAAA-------------------------------AAGA---AA---------------------------G-A----A........................................................................................................................................................22130.081010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------AAAA------------------AAAAAAAAAA-------------------------------AAGA---AA---------------------------G-A----AAG-.....................................................................................................................................................26180.061010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA-------------------------------AAGA---AA---------------------------G-A----AAC-C....................................................................................................................................................18200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA-------------------------------AAGA---AA---------------------------G-A----A........................................................................................................................................................19200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA-------------------------------AAGA---AA---------------------------G-A----AA.......................................................................................................................................................18200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA------------------AAAAAAAAAA-------------------------------AAGA---AA---------------------------G-..............................................................................................................................................................21200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA-------------------------------AAGA---AA---------------------------G-A----AAC-C....................................................................................................................................................19200.051010000
droBip1
CA--ACAAT-TCAAACA-ATC-------------------------------------------------------------------------------------------ACACCACCAACAA------------------------------------------T---AATAGCG--------------------GTAAT------------------------------G---C-------------------------------------------------------------------------------------CCC----AGG-----------------------------------------------------------ATAACTAAATCCTAAAAAAAACAAAATACTATTATTTGCGGCTAAAAAGGGTATTTTTTA------ATATTAGTATTGT-----------------------------------------------------------------------------------------AATTG----------------------------------------------------------GCAACAACAACAAAAAAAA------------------------------------------AAAT----TGTA---------------------------------------------------------------------------AA-----TT-------------------GT------------------T------------ATTTTAGAATAAGACGAAATATATAGCCTGGATTTAGTTGTCACAC--G---------------------TAGTGCC---------------TSizeHit CountTotal NormTotal
No Reads
droKik1
CA--CCGTT-AACGGCA-ACA-------------------------------------------------------------------------------------------ACAATTCGCACGT------------------------------------------C---GACGCTC-----ACAACGGCAGAAGCAGCAGC------------------------------GCCAG-------------------------------------------------------------------------------------CCGAAGACAC-----------------------------------------------------------ATAACGGAGCTCTGTA----------------------------------------------------------------------------------------AAATGGGCGTTAAGAAGCATATCAGCGAAACAC----------------------------------------CATGTGAGTAAATA---------CA-GCA-------TAAATAAAAAACA-------------------------A----------ACTAAAAACATACTTAAA-------------AA-----AAAAAA-------------------------------AAGA---A---------------------------ACAAACAAA-----AACAG----------------------------------------ACGCTATTTTTGA-------------------------------------------------------------------------------TTAACTTGGCSizeHit CountTotal NormTotal
No Reads
droFic1
ACTAGC----AACAACA-CAG-------------------------------------------------------------------------------------------GCAGTAGGA------------------GAATTTATAATAAGTAACTCTGCGGCTGC------------------------------------------------------------------------------------------------------------------------------------------------------TGCT----------------------------------------------------------------------------------------------------------------TCG----------------------------A----------------------------------------------------------------------------------------------------------TC-GAGAGTTG---------CG-CAAAAAAAAGCAAA--------AAAAAAAGA----------------------------A------------------------------AAA----AAGC--GAG------------------------------GA---G---------------------------AAAAACAAA-----AGCAACTGCCGCAAATCTTCCAC--------TTAATTATAAA----------------------------------------CTTATTTA----------------------------------------------------TTTGGSizeHit CountTotal NormTotal
No Reads
droEle1
AG--ACAAC-AACCGCA-ATC-------------------------------------------------------------------------------------------CCGCCACACACAC------------------------------------------A---AACGCCC-----GAA---ACACTCGCAGACAT-------------CCG--------------CACAC-------------------------------------------------------------------------------------CCA----CA-----------------------------------------------------------------------------CACACACAAGTTCACTACGTCACGCACA--------------------------------------------------------------------------------------------AAC--------ACAAACCATGTCTGCCAATA--------------------------AGTTTGC------------------------------ACA--------------------------AAA-----------AAAA--------------AAAA----TGAAAA-------------------------------AGGA---A---------------------------AC-A----AAC-AAAAAAA--------------------------------------------------------TAGA----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CA--ACATT-ACATACA-ACA-------------------------------------------------------------------------------------------GCAACAATAGCATACAAACCAGCAACAACAGCAGTAATATAGC-----------------------------------CAGAAGCAGCAGC------------------------------AAC-------------------------------------------A-------CCAAGAACAACA--------------ATTGCAGCA-------------------------------------------------------------------------------------------------------ATATCACC--------------------------------------------------------------------------AGAAAACACACCAGC------------------AA--------------------------------------------------------------------------------------------------------------CAA-----------CATCACCA------------------ATAATG-------------------------------TACA---AAAA-------AAAACAAAAAAAAACA---------A-----------------------GCTAC------------------A----CATTGGCGACAATCG-------------CTTTTGC-TCAATGCATTT-------------------------------------------------GTCAGSizeHit CountTotal NormTotal
No Reads
droBia1
AC--CGATT-CCCAGCT-TCA------------------------------------------------------------------------------------------GACTTCAGTGGC------------------------------------------------------C----AACA---GCCAG--------------CTAAATATCCA--------------C-----------------------------------------------------------------------------------------------GTTC----------------GTGC-----------------------------------------GT--------------------------------------------------CGGTTTTTTGTGGCCAAATCGGTGC-----------------------------------------------------------------------------------------GGC----------------------------------A----------GAAAAT--------------------------AAATATCACACACAA-----------CAAAAAAA------------------AAAGAA-------------------------------AAGA---AA---------------------------T-A----GAA-TCATAAC--------------------------------------------------------AAAA----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GC--CCAAC-TCA-CCG-CCC---ACGCCAC--------------------------------------------------------------------------------------ACGAGCAG---------------------------------------------C------A-----GGA---GC-------------------------------------------------------------------------------------------------------------------------------------AGAAGGTGA-----------------------------------------------------------GTGTCTAAATCTTATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------CCAAAATGATTTTAAAATAAAA-----------------------------------------------------------------------AAA----TGTTGA-------------------------------AGAA---T---------------------------TC-A----TTC-TAAATAT-------------TATAAAACAATTATAAAATCTAAA----C--------------AATA--------TTTAAAA-------------------C--T---------------------CTG----------CTCGTTTTAASizeHit CountTotal NormTotal
No Reads
droEug1
CT--TCAAC-TTCAACT-GCA-------------------------------------------------------------------------------------------GCAGCAACAACAG------------------------------------------T---GACAAAA------GG---GCAATTA--------------------------------------------------------------------------------------------------------------------------------------AGT-----------------------------------------------------------AGGCCCAAGATCTAGGCAAAAAGA------------------------------------------------------------------GTTAAGAGCCTCTAAGATGAGCGACGGGGTTAAGGCAATCAGATTTG----------------------------------------CTTGT--------------------------------AAA--------TTGAAAAGA----------------------------A------------------------------TTA----AAGT--TAA------------------------------TA---A---------------------------GAAAAGATA-----A--------------------------ACTTTAAAGTTTAAA---------------------------------------------------------C--T---------------------TTGAATATTGAAATCTAGTTAGCSizeHit CountTotal NormTotal
No Reads
dm3
CA--GGAGC-AACAGCA-ACT------------------------------------------------------------GCAATTGAAGCCACATCATCTGCAGCAACT-TCAACTTCAACTG------------------------------------------T---T------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAAAAGA-----------------------------------------------------------AGGCCCAAATACCACAGAAAACTCAAATTATATACC------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC------------------------------AGA--------------------------AAA---------------------------------A------------AACATAGATTTGTAGTCCCCTAATCATAG---CAAG--------------------------AAC-----TA-ACA-ATAAA--------------------------------------------------------CTGA----------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------------A------------AACATAGATTTGTAGTCC..............................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATAGATTTGTAGTCCCCT...........................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--------------------------AAA---------------------------------A------------AACATAGATTTGTAGTC...............................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AGCAAAAGA-----------------------------------------------------------AGGCCCAAATACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCCCCTAATCATAG---CAAG--------------------------AAC-----T.........................................................................................................................................................2512.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC------------------------------AGA--------------------------AAA---------------------------------A------------AACATAGATTTGTAGTC...............................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................T------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAAAAGA-----------------------------------------------------------AGGCCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCTGCAGCAACT-TCAACTTCAACTG------------------------------------------T---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATAGATTTGTAGTCCCCTAATCATA....................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.A--GGAGC-AACAGCA-ACT------------------------------------------------------------GCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TG------------------------------------------T---T------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAAAAGA-----------------------------------------------------------AGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CACATCATCTGCAGCAACT-TCAACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATATACC------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC------------------------------AGA--------------------------AAA---------------------------------A------------AACATAGAT.......................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GCAGCAAAAGA-----------------------------------------------------------AGGCCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------AAA---------------------------------A------------AACATAGATTTGTAGTC...............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................T------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAAAAGA-----------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAATCATAG---CAAG--------------------------AAC-----TA-ACA-AT.................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------------------A------------AACATAGATTTGTAGTCC..............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GAGC-AACAGCA-ACT------------------------------------------------------------GCAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATATACC------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC------------------------------AGA--------------------------AAA---------------------------------A------------AACAT...........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------------------A------------AACATAGATTTGTAGTC...............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AACATAGATTTGTAGTCCCCT...........................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCCTAATCATAG---CAAG--------------------------AAC-----TA-A......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AAATACCACAGAAAACTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAG---CAAG--------------------------AAC-----TA-ACA-ATAAA--------------------------------------------------------C.....................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTCCCCTAATCATAG---CAAG--------------------------AAC-----..........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATCATAG---CAAG--------------------------AAC-----TA-ACA-ATAAA--------------------------------------------------------C.....................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CACATCATCTGCAGCAACT-TCAACTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TCAACTTCAACTG------------------------------------------T---T------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................GCCACATCATCTGCAGCAACT-TCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CA--CCACC-ACCA-CTAC-CACCACAA--CTACAACAACAACAACAACCAGTACAAGCACCAACAACAACATCAACAACAACAACAAGAACCTCATCGACGGCGTCAATT-GCGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------ATGGCTGCCATAAATACGGTAAGTACGCGACATCATC----------------------------------------------------------------------------------------------------------------A----------------------------A----------------------------------------------------------------------------------------------------------CC-AAATAATG---------CT-AAAATATAATAAAA--------TAAAAGGAA----------------------------A------------------------------GAA----AAGC--AAA-----------------------------GAAAAG-------------------------------A----A-----AATAA--------------------------------------------------------AAGA----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....CCACC-ACCA-CTAC-CACCACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200002000000000000
droSec2
CA--TCATC-TGCAGCA-ACT-------------------------------------------------------------------------------------------TCAACTGCAGCTG------------------------------------------T---TGCAGAA-----ACA---GCAGTTGCACCAGC-------------------------------------------------------------------------------------------------------------------------AGCAGAAGA-----------------------------------------------------------ATGCCCAAATCCCACAGAAAACTGAAATTATCTACC-------------------------------------------------------------------------------------------------------------------------------------------TGCAGAA---------AA-------------------------------------------------------------------------------------------------------A------------GCCATAGATTTGTAGTCCTCTAATCATAG---CAAA--------------------------AAC-----TA-ACA-ATAAA--------------------------------------------------------CTAA----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CA--GCAAC-TACAGCA-CCA-CCGTGGCGT--------------------------------------------------------------------------------------ATGCGTAA---------------------------------------------T------AAGCGAACA---ACAAT--------------GTGAACATGAG--------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATATCATCAA----------------------------------------------------------------------------------------------GTTACGACCATCCAATTTCAGGGCTAGATCATAAAATATATCTAGC-----------CTTTAAA---------AAAATTTTGG------------------------------ATA--------------------------AAA--------------------------------A----CATC--AAA-----------------------------CTAAAGA----------AACTCA------------------GA-----AT-------------------AA------------------G------------CCTTTAAAATA----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CT--GATTT-CCCC-TTGC-CATTACCC--TTTGAAAGCCAAA----------------------------------------------------------------------------------------------------------------------------------CACAC-----ACT-----------------------------------------------------------------------------------------------------------------------------------------------------GCGCTCAAAATAATATCTTTTACATTACATTAAATAATGAAAAAGAACCAGTTAACTA-----------------------------------------------------------------ACTCAAGTAGTGTAGCTGCAAGAAAATAACAAGTCCCAAAA---------------------------------------------------------------------------------------AGATTG----------------------------------------------------------------------------------------------------AAAAAA-------------------------------TTCA---AA--AAAATAA----------------AG--C----T-----GTTAA--------------------------------------------------------CTGT----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAGTGTAGCTGCAAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGAAAATAACAAGTCCCAAAA---------------------------------------------------------------------------------------A..................................................................................................................................................................................................................................................................................................................................................2611.0010000100
dp5
CA--GCAGC-AACAACA-ACA-------------------------------------------------------------------------------------------ACAACAACAACAC------------------------------------------C---ATCACCA-----TCA---GCAATCATCGCAGC------------------------------CCC-----------------------------------------------------------CA-----------------------------C---AAAATGTGCTCAGCATAGTGAGT-----------------------------------------GT--------------------------------------------------TTTTTTTTTTTGGCAAAGGCAAAGC-----------------------------------------------------------------------------------------AGCCACCAACAAAA---------AA---------AAAATTATAATAAAATCAACAACA-----G----------------------------CAG-----------AAAA------------------A------------AATATAAAA--------------AA---A---AAGA---------------------------AA-A----CAC-TAAAAAA--------------------------------------------------------TAGA----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......GC-AACAACA-ACA-------------------------------------------------------------------------------------------ACAACAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
................................................................................................................ACAACAACAACAC------------------------------------------C---ATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510001000000
....GCAGC-AACAACA-ACA-------------------------------------------------------------------------------------------ACAACAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
............CAACA-ACA-------------------------------------------------------------------------------------------ACAACAACAACAC------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
droPer2
AA--GCAACAACACACC-ACA------------------------------------------------------------------------------------------GACAACAACCGC------------------------------------------------------A--------------------ATCCCGCCACACTAACACACACACACACACCCAAACAT-------------------------------------------G-------GCAATGGCTACG--------------GCTACGGCT-------------------------------------------------------------------------------------------------------ACGTCACGCACA--------------------------------------------------------------------------------------------AACACAAAAACAAAAACAATGTCTGCCAATA--------------------------AGTTTGC------------------------------AAA--------------------------AAA-----------GGAA---------------AAA----AAAA---------------------------------A---AAGG--------------------------AAA-----AA-A----T-------------------GA------------------AA---CG-------------TTAC----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AA--CAACC-TACTACT-ACT-------------------------------------------------------------------------------------------ACTACTACTACTA------------------------------------------C---TACAACA-----ACA---ACAACAACA---AT-------------CCA----CATAGTTTA-ACTGG-------------------------------------------------------------------------------------CGA----TGG-----------------------------------------------------------AGTTCAAACTTCAAAGAG------------------------------------------------GCAATTACTG-----------------------------------------------------------------------------------------------------------AGTAATGA---------CT-GCA-------AAAATCCTAAATA------------------------------------A-----------CAAA---------------TAACAAACAGA------------------------------------A---A---------------------------TT-A----TAT-AAAAACC--------------------------------------------------------AAAA----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CA--ACAAC-TTCAACA-GCA-------------------------------------------------------------------------------------------GCAACAACAACAACTTCAGCAGCAGCAGCAGCAACAACAACAACAGCTTCAGCTGC-----------------------------------------------------------------TCT-------------------------------------------A-------TCAGCAGCAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGC-----------------------------------------------------------------------------------------AGC----------------------------------A----------------------------GCAATGACAAAAGAAGAAACCGCAAACAA-----------CAACAACG------------------AAAAAA-------------------------------AAGA---AACA-------AACACACAAGAAAGTT---------A-----------------------TCAAC--------TAATTGATAAA---------------------------------------------------------C--G---------------------CTGCATA-----------CTTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGC-----------------------------------------------------------------------------------------AGC----------------------------------A----------------------------GCAATGACAA.................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAAGAAAGTT---------A-----------------------TCAAC--------TAATT...............................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGC-----------------------------------------------------------------------------------------AGC----------------------------------A----------------------------GCAATGA....................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC--------TAATTGATAAA---------------------------------------------------------C--G---------------------CTGC...................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CAACAACAACAACTTCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................CAGCAGCAGCAACAACAACAACAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.201000000000000000000000000000000010000000000000000000000000000000
.............AACA-GCA-------------------------------------------------------------------------------------------GCAACAACAACAACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.081000000000000000000000000000000001000000000000000000000000000000
..............ACA-GCA-------------------------------------------------------------------------------------------GCAACAACAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................AGCAGCAGCAACAACAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................AGCAGCAGCAGCAACAACAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000001000000000000000000000000000
droMoj3
CA--GCAAT-TGCAGCA-GCC-------------------------------------------------------------------------------------------ACAGCAACAGCAA------------------------------------------C---AACAGCA-----GCA---GCAGAAGCAGCAAC------------------------------ATCATTATCAACTTCATAATGAGCATTGATTGAAGCTAACTGTTGCACTTCTGCTTGGCTGCTG-----------------------------C--------------------------------------------------------------------------------------------------------------AAAAAGTGTTTGAAA------TTAAAAGCTGTGC-----------------------------------------------------------------------------------------AGCCAACAA----------------------------------------------------------------------------------------------------AAACAAAAAAAGGGAAAAA----TAAA--GA-----------------------------G---AAGA---------------------------AA-AATAGA-----AAAAA--------------------------------------------------------CTGT----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................GCA-----GCA---GCAGAAGCAGCAAC------------------------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.061000010
...........................................................................................................................................................................AACAGCA-----GCA---GCAGAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000010
...................CC-------------------------------------------------------------------------------------------ACAGCAACAGCAA------------------------------------------C---AACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
............................................................................................................................A------------------------------------------C---AACAGCA-----GCA---GCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
droGri2
CA--CAAT--AATGACA-ACA-------------------------------------------------------------------------------------------GCATCAACAACGG------------------------------------------TGGCAGCAACA-----ACA---GCGGAAACAACAAC------------------------------AACAATGCCAA--------------------------------------------------------------------------------------------------------------TAAAGATGCAATCGATGG-----------------------CAGAAACTCAAATTG------------------------------------------------GTAAGAGCCGTGC-----------------------------------------------------------------------------------------AGCTTATGGTATTT--------------------------------AAA--------AATAAAAGA----------------------------A------------------------------AAA----AGAC--AAAAAAAA-----------------------AAAA---GA--AAAGA-------------------AA-T----TA--------------------------------------------------CG-----------------------------------------------------------------------------------------TTAGCTTTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................GG------------------------------------------TGGCAGCAACA-----ACA---GCGGAAACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
...........................................................................................................................GG------------------------------------------TGGCAGCAACA-----ACA---GCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
........................................................................................................................AACGG------------------------------------------TGGCAGCAACA-----ACA---GCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101
.....................................................................................................................AACAACGG------------------------------------------TGGCAGCAACA-----ACA---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101
..................ACA-------------------------------------------------------------------------------------------GCATCAACAACGG------------------------------------------TGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110

Generated: 05/18/2015 at 03:57 AM