ID:

dan_2168

 Coordinate:

scaffold_13334:595061-595211 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.0 -15.0 -15.0

Flybase annnotation

exon [dana_GLEANR_5661:2]; CDS [Dana\GF21756-cds]; intron [Dana\GF21756-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
T-richLow_complexityLow_complexity+
mature
  1. scaffold_12916:16013390-16013407 +
  2. scaffold_12929:1892634-1892651 +
  3. scaffold_13230:2277605-2277622 -
  4. scaffold_13248:1183327-1183344 -
  5. dan_2168  scaffold_13334:595169-595186 -
  6. scaffold_13337:17375578-17375595 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGTATGTAATTAATTATCCATTAAAAAAAAGACAAAAACAAAAAAGAAGATATAAACATAAACACTTGTGGCTTTTAATGCTGATTTTATGATTAAATTTTTAGTCATTCATAGCAATTATTTAAATTTAGTTTCTTAAATTTAATAAAATTGCTACGAGGGGTTTGTTTGCTGAAAATATTTTTTAACTCTCCTACTTGCT
**************************************************...........................................(((((.(((((..........))))).)))))..(((((.....((((((((....))))))))...))))).....((((((((((....)))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
 V105
male body
.............................GTGCAGTTTACAGCGTTTCA.......................................................................................................................................................................................................... 20 0 1 3.00 3 0 0 2 0 1
..........CATCTCGATCGCCTTCATG.............................................................................................................................................................................................................................. 19 0 1 2.00 2 0 1 0 1 0
..........CATCTCGATCGCCTTCATGGTGC.......................................................................................................................................................................................................................... 23 0 1 2.00 2 1 1 0 0 0
..........CGTCTCGATCGCCTTCATGGTGCAGC....................................................................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0
...........AGCTCGATCGCCTTCATGGTGCAGT....................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
..........CATCTCGATCGCCTTCATGGC............................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
......................CTTCATGGTGCAGTTTACAGCGTT............................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0
..........CATCTCGATCGCCTTCATGGTGCAGT....................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.......GATCATCTCGATCGCCTTCATGGTGCA......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0
................................CAGTTTACAGCGTTTCAGG........................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0
...........ATCTCGATCGCCTTCATG.............................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0
......................GCTCATGGTGCAGTTTACAGAGTTT............................................................................................................................................................................................................ 25 3 1 1.00 1 0 0 1 0 0
...................CGCCTTCATGGTGCAGTTTACAGCGTT............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0
..................................GTTTACAGCGTTTCAGGGA...................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 1
.......................TTCATGGTGCAGTTTACAGCG............................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
..........CATCTCGATCGCCTTCATGGTGCAGTT...................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...................CGCCTTCATGGTGCAGTTTACAG................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
.................................AGTTTACAGCGTTTCAGGG....................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 1 0 0
...................CGCCTTCATGGTGCAGTTTACAGCGT.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0
.......................................................................AAAAAAAAGAGAAAAACAAAAAAG............................................................................................................................................................ 24 1 2 0.50 1 1 0 0 0 0
.......................................................................AAAACAAAGACAAAACCAAAAAAGA........................................................................................................................................................... 25 2 3 0.33 1 1 0 0 0 0
........................................................AATTGTTGATCCATTAAAAAAAA............................................................................................................................................................................ 23 3 12 0.25 3 3 0 0 0 0
...........................................................................GAAAGGCAAAAACAAGAAAGAAGA........................................................................................................................................................ 24 3 5 0.20 1 1 0 0 0 0
..................................................................................AAAAACAAAAAGGAAGATA...................................................................................................................................................... 19 1 6 0.17 1 1 0 0 0 0
...........................................................................AAAAGACAAAAACAAAAA.............................................................................................................................................................. 18 0 6 0.17 1 1 0 0 0 0
..........................................................................AAAAAGACGAACACAAAAAAGA........................................................................................................................................................... 22 2 7 0.14 1 1 0 0 0 0
............................................................................AAAGAAAAAAACCAAAAAGAAGA........................................................................................................................................................ 23 2 7 0.14 1 0 0 0 1 0
..........................................................................AAAAAGACAAAACCGAAAAAGA........................................................................................................................................................... 22 2 7 0.14 1 1 0 0 0 0
.................................................................................CGAAAACAAAAAAGAAGA........................................................................................................................................................ 18 1 8 0.13 1 1 0 0 0 0
................................................................................................................................................................................................................................AAAAATTTTTGAACTCTCC........ 19 2 18 0.11 2 2 0 0 0 0
...........................................................................AAAAGACAGAAGCAAAAAAGA........................................................................................................................................................... 21 2 10 0.10 1 1 0 0 0 0
............................................................................CAAGACAAGAACAAAAAAGA........................................................................................................................................................... 20 2 12 0.08 1 1 0 0 0 0
........................................................................AAAAACAGACAAAAACAAAAAA............................................................................................................................................................. 22 1 13 0.08 1 1 0 0 0 0
............................................................AATCATCCATTAACAAAAA............................................................................................................................................................................ 19 2 14 0.07 1 1 0 0 0 0
........................................................................AAAAAAAGACAAAAACAAGA............................................................................................................................................................... 20 1 16 0.06 1 1 0 0 0 0
..........................................................................AAAAAGACAAAAACAAGAAA............................................................................................................................................................. 20 1 19 0.05 1 1 0 0 0 0
..........................................................................AAAAAGACAAAACCAAAAA.............................................................................................................................................................. 19 1 20 0.05 1 1 0 0 0 0
..........................................................................AAAAAGACAACAACAAAAA.............................................................................................................................................................. 19 1 20 0.05 1 1 0 0 0 0
..............................................................................AGACAAGAACAAAGAAGAA.......................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0
.........................................................................AAAAAAGACAAAAACACAA............................................................................................................................................................... 19 1 20 0.05 1 0 0 0 1 0
..........................................................................AAAAAGACAAAAAAAAAAAAGAA.......................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0
......................................................................TAAAAAAAAGACATAAAGAAGAA.............................................................................................................................................................. 23 3 20 0.05 1 1 0 0 0 0
...........................................................................AAAAGACAAAAACAAAAAAAAA.......................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0
..............................................................TTAACCCTTAAGAAAAAGAC......................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
.......................................................................AAAAAAAAGACACGAACAAAAA.............................................................................................................................................................. 22 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TATAGAGCTAGTAGAGCTAGCGGAAGTACCACGTCAAATGTCGCAAAGTCCATACATTAATTAATAGGTAATTTTTTTTCTGTTTTTGTTTTTTCTTCTATATTTGTATTTGTGAACACCGAAAATTACGACTAAAATACTAATTTAAAAATCAGTAAGTATCGTTAATAAATTTAAATCAAAGAATTTAAATTATTTTAACGATGCTCCCCAAACAAACGACTTTTATAAAAAATTGAGAGGATGAACGA
**************************************************...........................................(((((.(((((..........))))).)))))..(((((.....((((((((....))))))))...))))).....((((((((((....)))))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 V039
embryo
 V055
head
..........................TACAAAGTCAAGTGTCGCAAA............................................................................................................................................................................................................ 21 3 10 2.70 27 24 2 0 1
..........................TACAAAGTCAAGTGTCGCAA............................................................................................................................................................................................................. 20 3 20 0.65 13 13 0 0 0
...........................ACCAAGTCGTATGTCGCAA............................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 1 0
............................................................................................................................................................................................................TGCTACCCACACAAACTACT........................... 20 3 20 0.05 1 0 0 1 0
.............................CACGTCAAATGTGGCAAGA........................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13334:595011-595261 - dan_2168 ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGTATGT--AATTAA----TTATCCA---------T------------------------TAAA-AAAAAGACA--AAAAC--AAAAAAGAAGATATAAA-CATAAAC---------ACTTGT-------------------------GG---------------CTTTT-AATGCTGATTTTATGATTAAAT-TTTTAGTCATTCAT-------------------------AGCAATTATTTAAAT-------TTA----------------------------------------------------------------GTTTC----TTAAATTTAATAAAATTGCTACGAGGGGTTTGTTTGCTGAAAATATTTTTTAACTCTC-CTACTTGCT
droBip1 scf7180000396431:962520-962768 + ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGTATGT--AATTAA----TTAACCA---------T------------------------TAAACAGA--GACA--TAAACACAAAAAAT-------AAACCATCAAC---------ACTTTC-------------------------GG---------------CTTTT-AATTTTGATTTTGTGATCAAATCTTTTAGTAATTCAT-------------------------AGCAAATATTTAAAT-------TTACTT-------------------------------------------------------------------TTGTTAAATTTAATAAAATTGCTACGAAGGGTTTGTTTGCTGAAAATAGTTTTTAACTATCACTTCTTGCT
droKik1 scf7180000301542:121492-121708 - ATATCTCGATCATCTCAATAGCCTTTATGGTGCAATTTACAGCGTTTCAGGTGAGT--ACC---TGCTGGGACCA---------TTGATGATCATCTCTAACATACTATTGAACTTT--AACT--AAAATGATACAAAA-------AAAC--------------------------------------CTAAAT------------------------------------------TCAGAATTTTAATTAGTTTCC-------------------------ATTAATTATTTAAATCGAACTATTATTTTAATTAATTCCAAAAGTAAATACTATTGAAT-------------------------------------------------------------------------------AATTAT----------------------
droFic1 scf7180000454077:1351775-1351826 - ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490546:603726-603778 - ATATCTCGATCATCTCGATCGCCTTCATGGTGCAATTTACAGCGTTTCAGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000771612:108493-108544 - ATATCTCGATCATCTCGATCGCCTTTATGGTGCAATTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302421:1402252-1402303 - ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415568:172083-172240 + ATATCTCGATCATCTCGATCGCCTTCATGGTGCAATTTACAGCGTTTCAGGTGAGC--CAA---C---ATTGCCA---------TTGCCAGGC--------------------------GACA--A---------------------AA------CATATTTTTAAATTTTTGGTAATGGGTA-TTAAAAAAAGAGTGGTAAATAAAGTTACAA-AGTTAAATGAAGAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409065:125540-125675 - ATATCTCGATCATCTCGATCGCCTTTATGGTGCAATTTACAGCGTTTCAGGTGAGA--GAC-------------------------------------------------------------A--ACAAC--AA------------AAA------ACTATTCCGAAATTGTTAACCAAAAGAGTTAAAAAAAAAAGTAG---------------TTTTTAAATGTTGAAATTATGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:16827522-16827573 + ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:15927840-15927891 + ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_17:661615-661666 + ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:15438177-15438440 + ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGTGAGA--GACACA----ATTGCCACAATAGCCCTTAAAACGA-----------AC---CAAAAAGA--AAAATAAAAAT--AAAAAAGAAAAAGAAAA------ACTGTTTCGAAATTTGT-------------------------AG---------------TAATC-GTTGCCAAAATTTCT----------------------TTGTTAATGTAATAGTCATTGTAATTGTAATTGTTTGAATCCGAAT-TAT----------------------------------------------------------------GTACCTATGATGAAC----TCAATCTACTGCAAATTGTTTGAATGCAAAAAGTAT----------------------
droEre2 scaffold_4690:7182514-7182653 + TTGACAATTG-----------------------------------------------------------------------------------------------------AACAAA--AACC--AACAAAAAAAAAGA-------AAAA--------------------------------------AAAAAAACAAAAAAAAAAAACT-------------------------ATTAAAC-----------TAAT-------------------------AACTAAAAACTAAAA-------CTAATT---------------------------ACATTATTAAGCAACTTTTTCCTCAGCTTTATTAATTTC----CCAAATTTA-----------------------------------------------------------
dp5 XL_group3b:240408-240463 - ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTCACCGCGTTTCAGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_56:266697-266752 - ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTCACCGCGTTTCAGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004963:4633142-4633194 - ATATCTCAATCATCTCAATAGCGTTTATGGTTCAGTTTACAGCATTTCAGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:6501040-6501106 - ATATCTCAATCATCTCGATAGCGTTCATGGTGCAGTTTACTGCGTTTCAGGTGAGCGAAATTGA----TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:1491431-1491489 + ATATCTCAATCATCTCGATCGCCTTTATGGTGCAGTTCACTGCGTTCCAGGTGAGA--AAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14853:5989963-5990022 + ATATCTCAATCATCTCGATAGCGTTCATGGTGCAGTTTACTGCGTTTCAGGTGAGT--TAC---T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGTATGT--AATTAA----TTATCCA---------T------------------------TAAA-AAAAAGACA--AAAAC--AAAAAAGAAGATATAAA-CATAAAC---------ACTTGT-------------------------GG---------------CTTTT-AATGCTGATTTTATGATTAAAT-TTTTAGTCATTCAT-------------------------AGCAATTATTTAAAT-------TTA----------------------------------------------------------------GTTTC----TTAAATTTAATAAAATTGCTACGAGGGGTTTGTTTGCTGAAAATATTTTTTAACTCTC-CTACTTGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................GTGCAGTTTACAGCGTTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................2013.003000012
..........CATCTCGATCGCCTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002101000
..........CATCTCGATCGCCTTCATGGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2312.002110000
..........CATCTCGATCGCCTTCATGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................CTTCATGGTGCAGTTTACAGCGTT..................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
..........CATCTCGATCGCCTTCATGGTGCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.......GATCATCTCGATCGCCTTCATGGTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................................CAGTTTACAGCGTTTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........ATCTCGATCGCCTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
...................CGCCTTCATGGTGCAGTTTACAGCGTT..................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.......................TTCATGGTGCAGTTTACAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........CATCTCGATCGCCTTCATGGTGCAGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...................CGCCTTCATGGTGCAGTTTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.................................AGTTTACAGCGTTTCAGGG............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...................CGCCTTCATGGTGCAGTTTACAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
...................................................................................................................AAAAGACA--AAAAC--AAAAA.......................................................................................................................................................................................................................................................................................................................1860.171010000
droBip1
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGTATGT--AATTAA----TTAACCA---------T------------------------TAAACAGA--GACA--TAAACACAAAAAAT-------AAACCATCAAC---------ACTTTC-------------------------GG---------------CTTTT-AATTTTGATTTTGTGATCAAATCTTTTAGTAATTCAT-------------------------AGCAAATATTTAAAT-------TTACTT-------------------------------------------------------------------TTGTTAAATTTAATAAAATTGCTACGAAGGGTTTGTTTGCTGAAAATAGTTTTTAACTATCACTTCTTGCTSizeHit CountTotal NormTotal
No Reads
droKik1
ATATCTCGATCATCTCAATAGCCTTTATGGTGCAATTTACAGCGTTTCAGGTGAGT--ACC---TGCTGGGACCA---------TTGATGATCATCTCTAACATACTATTGAACTTT--AACT--AAAATGATACAAAA-------AAAC--------------------------------------CTAAAT------------------------------------------TCAGAATTTTAATTAGTTTCC-------------------------ATTAATTATTTAAATCGAACTATTATTTTAATTAATTCCAAAAGTAAATACTATTGAAT-------------------------------------------------------------------------------AATTAT----------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAATTTACAGCGTTTCAGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATATCTCGATCATCTCGATCGCCTTTATGGTGCAATTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAATTTACAGCGTTTCAGGTGAGC--CAA---C---ATTGCCA---------TTGCCAGGC--------------------------GACA--A---------------------AA------CATATTTTTAAATTTTTGGTAATGGGTA-TTAAAAAAAGAGTGGTAAATAAAGTTACAA-AGTTAAATGAAGAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ATATCTCGATCATCTCGATCGCCTTTATGGTGCAATTTACAGCGTTTCAGGTGAGA--GAC-------------------------------------------------------------A--ACAAC--AA------------AAA------ACTATTCCGAAATTGTTAACCAAAAGAGTTAAAAAAAAAAGTAG---------------TTTTTAAATGTTGAAATTATGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................CGCCTTCATGGTGCAGTTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGCCTTCATGGTGCAGTTTACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGCCTTCATGGTGCAGTTTACAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CTTCATGGTGCAGTTTACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GATCGCCTTCATGGTGCAGTTTAC........................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CATCTCGATCGCCTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGCCTTCATGGTGCAGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CATGGTGCAGTTTACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CCTTCATGGTGCAGTTTACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CATCTCGATCGCCTTCATGGTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CCTTCATGGTGCAGTTTAC........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGCAGTTTACAGCGTTTC................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................CTTCATGGTGCAGTTTACAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ATCTCGATCGCCTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGCAGTTTACAGCGTTTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGCCTTCATGGTGCAGTTTACAGCGTTT.................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........CATCTCGATCGCCTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TATCTCGATCATCTCGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGATCATCTCGATCGCCTTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CAGTTTACAGCGTTTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............CGATCGCCTTCATGGTGCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GCAGTTTACAGCGTTTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTCATGGTGCAGTTTACAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........CATCTCGATCGCCTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2116.00603300000000000000
..........CATCTCGATCGCCTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00303000000000000000
ATATCTCGATCATCTCGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201100000000000000
ATATCTCGATCATCTCGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..........CATCTCGATCGCCTTCATGGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
...........ATCTCGATCGCCTTCATGG..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..........CATCTCGATCGCCTTCATGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...........ATCTCGATCGCCTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
droSec2
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................CGCCTTCATGGTGCAGTTTACAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060060
......................CTTCATGGTGCAGTTTACAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040040
ATATCTCGATCATCTCGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0041030
..........CATCTCGATCGCCTTCATGGTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030030
..........CATCTCGATCGCCTTCATGGTGCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030120
........ATCATCTCGATCGCCTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020020
..........CATCTCGATCGCCTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
...............................GCAGTTTACAGCGTTTCAGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2112.0020020
.............CTCGATCGCCTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020020
...................CGCCTTCATGGTGCAGTTTACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..........CATCTCGATCGCCTTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...............CGATCGCCTTCATGGTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........CATCTCGATCGCCTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...............................GCAGTTTACAGCGTTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
......................CTTCATGGTGCAGTTTACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..........CATCTCGATCGCCTTCATGGTGCAGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.................................AGTTTACAGCGTTTCAGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1911.0010010
.........................CATGGTGCAGTTTACAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...............................GCAGTTTACAGCGTTTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..........CATCTCGATCGCCTTCATGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
...........ATCTCGATCGCCTTCATGGTGCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
..................................GTTTACAGCGTTTCAGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1811.0010010
.....................CCTTCATGGTGCAGTTTACAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
................................CAGTTTACAGCGTTTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
......................CTTCATGGTGCAGTTTACAGCGTT..................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
droYak3
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTTACAGCGTTTCAGGTGAGA--GACACA----ATTGCCACAATAGCCCTTAAAACGA-----------AC---CAAAAAGA--AAAATAAAAAT--AAAAAAGAAAAAGAAAA------ACTGTTTCGAAATTTGT-------------------------AG---------------TAATC-GTTGCCAAAATTTCT----------------------TTGTTAATGTAATAGTCATTGTAATTGTAATTGTTTGAATCCGAAT-TAT----------------------------------------------------------------GTACCTATGATGAAC----TCAATCTACTGCAAATTGTTTGAATGCAAAAAGTAT----------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................CTTCATGGTGCAGTTTACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2113.00300300000000
..........CATCTCGATCGCCTTCATGGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201100000000
....................................................................................................................................................A------ACTGTTTCGAAATTTGT-------------------------A..........................................................................................................................................................................................................................................................1911.00100010000000
..ATCTCGATCATCTCGATCGCCTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
...............CGATCGCCTTCATGGTGCAGTTTACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
..........CATCTCGATCGCCTTCATGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
..........CATCTCGATCGCCTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
................................CAGTTTACAGCGTTTCAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..........CATCTCGATCGCCTTCATGGTGCAGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
..........CATCTCGATCGCCTTCATGG..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.............CTCGATCGCCTTCATGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
......................CTTCATGGTGCAGTTTACAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...................CGCCTTCATGGTGCAGTTTACAGCGTTTC................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100010000000
...................CGCCTTCATGGTGCAGTTTACAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000100000
..........CATCTCGATCGCCTTCATGGTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEre2
TTGACAATTG-----------------------------------------------------------------------------------------------------AACAAA--AACC--AACAAAAAAAAAGA-------AAAA--------------------------------------AAAAAAACAAAAAAAAAAAACT-------------------------ATTAAAC-----------TAAT-------------------------AACTAAAAACTAAAA-------CTAATT---------------------------ACATTATTAAGCAACTTTTTCCTCAGCTTTATTAATTTC----CCAAATTTA-----------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................GCAACTTTTTCCTCAGCTTT.................................................................................2011.0010100000
................................................................................................................................................................................................AAACAAAAAAAAAAAACT-------------------------ATTAAAC-----------C..................................................................................................................................................................................................2611.0010100000
dp5
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTCACCGCGTTTCAGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........CATCTCGATCGCCTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050210200000
.............................GTGCAGTTCACCGCGTTTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................2214.0040400000000
.......GATCATCTCGATCGCCTTCATGGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................GGTGCAGTTCACCGCGTTTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.......GATCATCTCGATCGCCTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
ATATCTCGATCATCTCGATCGCCTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
..ATCTCGATCATCTCGATCGCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................AGTTCACCGCGTTTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
..........CATCTCGATCGCCTTCATGGTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
.................................AGTTCACCGCGTTTCAGGG............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
ATATCTCGATCATCTCGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......................CTTCATGGTGCAGTTCACCGCGTTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100000
............................GGTGCAGTTCACCGCGTTTCAGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............CTCGATCGCCTTCATGGTGCAGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
..................................GTTCACCGCGTTTCAGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
droPer2
ATATCTCGATCATCTCGATCGCCTTCATGGTGCAGTTCACCGCGTTTCAGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........CATCTCGATCGCCTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2116.006600000
..........CATCTCGATCGCCTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
.............CTCGATCGCCTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
..........CATCTCGATCGCCTTCATGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
..........CATCTCGATCGCCTTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..........CATCTCGATCGCCTTCATGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
ATATCTCGATCATCTCGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................GCAGTTCACCGCGTTTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
...........ATCTCGATCGCCTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............................GCAGTTCACCGCGTTTCAGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
droWil2
ATATCTCAATCATCTCAATAGCGTTTATGGTTCAGTTTACAGCATTTCAGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........CATCTCAATAGCGTTTATGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300030
................AATAGCGTTTATGGTTCAGTTTACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200020
...........ATCTCAATAGCGTTTATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
................AATAGCGTTTATGGTTCAGTTTACA.......................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
.......AATCATCTCAATAGCGTTTATGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
ATATCTCAATCATCTCAATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.......AATCATCTCAATAGCGTTTATGG..................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..........CATCTCAATAGCGTTTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
................AATAGCGTTTATGGTTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............CTCAATAGCGTTTATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
....................GCGTTTATGGTTCAGTTTAC........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...........ATCTCAATAGCGTTTATGGTTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
ATATCTCAATCATCTCAATAGCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.................................AGTTTACAGCATTTCAGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2011.00100001
......................GTTTATGGTTCAGTTTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...........ATCTCAATAGCGTTTATGGTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.............CTCAATAGCGTTTATGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...................AGCGTTTATGGTTCAGTTTACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
............TCTCAATAGCGTTTATGGTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
...............CAATAGCGTTTATGGTTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
........ATCATCTCAATAGCGTTTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
............TCTCAATAGCGTTTATGGTTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
...........ATCTCAATAGCGTTTATGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
...........ATCTCAATAGCGTTTATGGTTCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
......................GTTTATGGTTCAGTTTACA.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
............TCTCAATAGCGTTTATGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.TATCTCAATCATCTCAATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
....CTCAATCATCTCAATAGCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
ATATCTCAATCATCTCGATAGCGTTCATGGTGCAGTTTACTGCGTTTCAGGTGAGCGAAATTGA----TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..ATCTCAATCATCTCGATAGCGTTCATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2912.002000000000000000000000000000000000000000000000000000000000000020
...........ATCTCGATAGCGTTCATGGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2212.002001100000000000000000000000000000000000000000000000000000000000
...............CGATAGCGTTCATGGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
...............CGATAGCGTTCATGGTGCAGTTTACTG......................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
ATATCTCAATCATCTCGATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
......................GTTCATGGTGCAGTTTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..ATCTCAATCATCTCGATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
.............CTCGATAGCGTTCATGGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
ATATCTCAATCATCTCGATAGCGTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
....CTCAATCATCTCGATAGCGTTCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...............CGATAGCGTTCATGGTGCAGTTTACTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
..................................GTTTACTGCGTTTCAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
ATATCTCAATCATCTCGATCGCCTTTATGGTGCAGTTCACTGCGTTCCAGGTGAGA--AAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
ATATCTCAATCATCTCGATCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.......AATCATCTCGATCGCCTTTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
ATATCTCAATCATCTCGATAGCGTTCATGGTGCAGTTTACTGCGTTTCAGGTGAGT--TAC---T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........TCATCTCGATAGCGTTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.TATCTCAATCATCTCGATAGCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110

Generated: 05/18/2015 at 03:59 AM