ID:

dan_2165

 Coordinate:

scaffold_13334:536491-536641 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_5714:7]; CDS [Dana\GF21814-cds]; intron [Dana\GF21814-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCTCCGTTTGAATTAGACATTAAAGTGAGGTTAGGTTCTTAGGCCCCCCTCTTTGTCGTCCTTCCTTTCTTTTTGTTTGTTTCATTCTCTTGATTTCTTTTTGCCAAATTCTTGCTTTTTTTTCTCCGTCGACCTTGGTCTGATGTAACGGTATGACGGTGTGTGTGTGTGTGTTATTATTGGATAATGATGTTGGGGCAGCAGCTGTGGCCACCGCAGCTGCCCGCGCCGCTGCCGCCGCCCGCAAAGGA
**************************************************.......(((((...................(((......)))................................((((((((((((........))).))).)))))).............((((((((...))))))))...)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V055
head
 M044
female body
 V039
embryo
....................................................................................................................................CCTTGGTCAGACGTAGCGG.................................................................................................... 19 3 2 0.50 1 1 0 0 0
....................TGAAGTGAGGTTAGATCCTT................................................................................................................................................................................................................... 20 3 7 0.14 1 0 1 0 0
.....................................................................................................................................CTTGGTCAGACGTAGCGG.................................................................................................... 18 3 20 0.10 2 0 0 2 0
.................................................................................................................................................TCGCGGTATGACGGTGTA........................................................................................ 18 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

CGAGGCAAACTTAATCTGTAATTTCACTCCAATCCAAGAATCCGGGGGGAGAAACAGCAGGAAGGAAAGAAAAACAAACAAAGTAAGAGAACTAAAGAAAAACGGTTTAAGAACGAAAAAAAAGAGGCAGCTGGAACCAGACTACATTGCCATACTGCCACACACACACACACAATAATAACCTATTACTACAACCCCGTCGTCGACACCGGTGGCGTCGACGGGCGCGGCGACGGCGGCGGGCGTTTCCT
**************************************************.......(((((...................(((......)))................................((((((((((((........))).))).)))))).............((((((((...))))))))...)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V105
male body		 V039
embryo
 M044
female body
 V055
head
 V106
head
..............................................................AGGAAGGAAAAACAAAAAAAGTA...................................................................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
......................................................CACCAGGCAGGAAAGAAAAA................................................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0
.....................................................................................AAAGAACTAAAGAAAAACGG.................................................................................................................................................. 20 1 3 0.33 1 0 0 1 0 0 0
...............................................................................................AGAAAAACGGCTTAAGAA.......................................................................................................................................... 18 1 4 0.25 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................CGGCGACAGGCGCGGCGACGGAG............. 23 3 4 0.25 1 0 0 1 0 0 0
..............................................................................................................................CCAGCTGGAACTAGACTATAT........................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0
.................................................AGCAACAGCAGGAAGAACAGAA.................................................................................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................CCGGCGCGGCCACGGCGGCGT......... 21 3 5 0.20 1 0 0 0 1 0 0
....................................................ACCACCAGGAAGGAAAGAAAGA................................................................................................................................................................................. 22 3 6 0.17 1 1 0 0 0 0 0
.........................................................CAGGAAGAAAAGAAAAACAA.............................................................................................................................................................................. 20 1 6 0.17 1 1 0 0 0 0 0
...................................................................ACAAAAACAAACAAAGCAAGAGCA................................................................................................................................................................ 24 3 6 0.17 1 1 0 0 0 0 0
..........................................................................AAACCAAAGTAAGAGAACT.............................................................................................................................................................. 19 2 7 0.14 1 1 0 0 0 0 0
.................................................................AAAGAAAGACAAACACAGTA...................................................................................................................................................................... 20 2 7 0.14 1 1 0 0 0 0 0
.....................................................................................................................................................CCATACTGCCCGCCACACA................................................................................... 19 3 9 0.11 1 0 0 0 1 0 0
.................................................................................................................................................................................................................................CGCGGCGACGGTGGGCGGCGT..... 21 3 9 0.11 1 0 0 0 0 1 0
......................................................CAGAAGGCAGGAAAGAAAA.................................................................................................................................................................................. 19 2 9 0.11 1 1 0 0 0 0 0
..............................................................AGGAAAGAAAACCAAACAAG......................................................................................................................................................................... 20 2 10 0.10 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................GGCGACGGCGGCGGTCATTTA.. 21 3 12 0.08 1 0 0 0 0 1 0
................................................................AGAAGAAAAACAAACAAAGGAAGA................................................................................................................................................................... 24 3 13 0.08 1 1 0 0 0 0 0
...............................................................................................AGGAAAACGGCTTAAGAAAGA....................................................................................................................................... 21 3 13 0.08 1 1 0 0 0 0 0
.........................................................CAGGAAGGAAACCAAAAC................................................................................................................................................................................ 18 2 14 0.07 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................TCGGCGCGGCGAAGGCGGCGG......... 21 3 14 0.07 1 0 1 0 0 0 0
..............................................................AGGAGAGAAAAACAGACAAA......................................................................................................................................................................... 20 2 16 0.06 1 0 1 0 0 0 0
.....................................................ACAACAGGAAAGAAAGAAAAA................................................................................................................................................................................. 21 2 16 0.06 1 1 0 0 0 0 0
...................................................AAACAGGAGGAAGAAAAGA..................................................................................................................................................................................... 19 2 17 0.06 1 0 1 0 0 0 0
.......................................................ACCAGGCAGGAAAGAAAA.................................................................................................................................................................................. 18 2 17 0.06 1 1 0 0 0 0 0
.....................................................ACCACAGGAAGGGAAGAAAA.................................................................................................................................................................................. 20 3 19 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................CGACGGGCGCGGCCAGGGA.............. 19 3 20 0.05 1 0 0 0 0 1 0
................................................................AAAAGAAAAACAAACAAAG........................................................................................................................................................................ 19 1 20 0.05 1 0 0 1 0 0 0
...........................................................GAAAGGAAAGAAAAACAA.............................................................................................................................................................................. 18 1 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................GCCATACTGCCACATCTAC.................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
............................................................GAAGGAAAGGAAAACATA............................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0
...........................................................GGAAGCAAAGAAAAACAAAAA........................................................................................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0
..........................................................................................ACGAACGAAAAACGGCTTAA............................................................................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0
............................................................................................TGAACAAAAACGGCTTAAGAA.......................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13334:536441-536691 + dan_2165 G----CTC---C------------------------------------------------------------------------------------------GTTTGAATTAGACATTAAAGTGAGGTTAGG--TTCTTAGGCCC------------------------------------------------------------------------------------------------------------------CCCTCTTTG--TCGTCCTTC-CTTTCTTTTTGTTTGT------T--------TCATTCTCTTGATTTCTTTTTGCCAAAT-TCT----TGCTTTTTTTTC----TC-CGTCGACCTTGGTCTGATGTAACGGTATGACGGT--GTGT---------------GTGTGT--GTGTT------------------------------------------------AT-----------TATTGGA---TA-ATGATGT-TGGG-------G---------------CAGCAGCTGTGGCCACCGCAGCTGCCCGCGCCGCTGCCGCCGCCCGCAAAGGA
droBip1 scf7180000396431:1017949-1018217 - C----TAT---T-----------------------------------------------------------------------TTGTATCC-----------CTTTGAA---------AAAGTATGGTTAGGAATTC-TAGGGCC------------------------------------------------------------------------------------------------------------------TCCCGTTTG--TTTTCTTTCCTTTTTTTTTTGCTTTT------T--------TCATCCTCTTGATTTCTTTTTGCCA--A-TTATTTTTGGTTTTAT--T--T--C-TTTTGACCATGGTTTGATGTAACGGTATTACGGTATTA---------TCAT-GCTGTGTGT--GGGTT------------------------------------------------TTTATTGGATA-AAATTGGA---TA-ATGATGT-TGGG-------G---------------CAGCAGCTGTGGCCACTGCAGCTGCCCGCGCCGCTGCCGCTGCCCGCAAAGGA
droKik1 scf7180000302495:150986-151241 - G----CTC---CAAACTGCATGGTATTATCGTTCTTAGGGTTAATCGGTACATTTGATACAGTCAGCTTTATGGGGTTAAGCTGAGCACACCCAATACCC-CCC-----------------------------------------T------------------------------------------------------------T------------------------------------------------A---TCCTGATTA--C-TTTCTGTTTTCTCTCTTTGGTTGTT-----T--------CCACTCTCTTGATTTCTT-GTGTAACAT-TTGTTTTTGGTTTG-T--------CGCATTGA-----------------------------------------TCACCATTGTGTGTGTAC----------------------------------------------------------------------------------GATCGAT-------C---------------CAGTAGCAGTGGCCACTGCAGCTGCACGCGCCGCAGCCGCTGCCC--------
droFic1 scf7180000454073:1504054-1504202 + C----CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTTGTCTCTCTTTGGTTGTT--------------TCA--CTCTTGATTTCTT-TTGCCACAC-TTGTTTTTGGTTTATT--TTTT--CG----------------------------------------------------------T----GGGATGTGA---AT---------ATGAA----T-----------------------------------ATGGA---TA-AT---GAT------------------------------CAGCCGTGGCCACTGCCGCTGCCCGCGCCGCTGCTGCAGCCCGCA-----
droEle1 scf7180000491272:1468329-1468568 + G----TTA---C------------------------------------------------------ATTTCTAGGCTTAAGTCTAGCACCCCA----CCC----------------------------------------------------------------------------------------------------------C------------------------------------------------AAACTTATCATTG--TGATTTTTTTTTATCTCTTTGGTTGTT--------------TCACTCTCTTGATTTCT--TTGCCACAT-TTGTTTTTGGTT------------CGCATTGA-----------------------------------------TGACGATTGTAT----GGGATGTGGTGGAAATAAAA---ATAA----AAAT-------GGATAAAATT-ATTAATGGAAT-ATATTGGA---TA-AC---GAT------------------------------CAGCTGTGGCCACTGCCGCTGCTCGCGCCGCTGCCGCAGCCC--------
droRho1 scf7180000777755:5783-6026 + A----CAATTAA------------------------------------------------------CTTTTAATGATTAAGTCTAGTACCCCA----CCC-----------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCCTCATTA--TAATTTAGTTGTCTCTCTTTGGTTGTT--------------TCACTCTCTTGATTTCT--TTGCCACAT-TTGTTTTTGGTTTTTT--TGTT--CTCTTTGA-----------------------------------------TGACGTTTGTGT----GGGATGTGATGGAC---------ATGA----AAAT-------GGATATTATG-ATCAATGGAAT-ATATTGGA---TA-AT---GAA------------------------------CAGCCGTGGCCACTGCCGCTGCTCGCGCCGCTGCCGCAGCCC--------
droBia1 scf7180000302069:988409-988582 - C----CCC---A------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------T----------------------------------------------------ATTCTTG--TTATTTCG--TTCTCTCTTTGGTTGTTT----C--------TCACTCTCTTGATTTCTT-TTGCCACGTTTTGTTTTTGGTTT-------------------------------------------------------------GACGATT--------GGGATGTAA---AA---------ATAA----AACT-------GAATAA-ATT-------------ATAATGGA---TA-AT---GAT------------------------------CAGCTGTGGCCACTGCCGCTGCTCGCGCCGCTGCCGCAGCCC--------
droTak1 scf7180000415101:148540-148724 + C----T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTTGTCTCTCTTTGGTTGTTT----T--------TCACTCTCTTGATTTCTT-TTGCCGCATTTTGTTTTTGGTTTTAT--C----GC-CATTGA-----------------------------------------TCACGATTGTGTGT--GGGATGTGA---AA---------ATGAA---AAAT-------GGACAA-ATG-------------ATAATGGA---TA-AT---GAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGCGTCGCTGCCGCAGCCCGCAA----
droEug1 scf7180000408744:57879-58070 + T----CAC---A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCCTCATTA--CGTTTTTGCTGTCTCTCTTTGGTTGTTTTTTTT--------TCACTCTCTTGATTTCTT-TTGCCACAT-TTGTTTTTGGTTTAAT--------CACATTGA-----------------------------------------TGACGATTGTGTGT--TCGATATGA---AA-----T---ATGAA----AA-----------------------------------CGGA---T--ATAATGAT------------------------------CAGCTGTGGCCACTGCCGCCGCTCGTGCCGCTGCCGCAGCCCGTA-----
dm3 chrX:8442872-8443089 + TAGAGTTA---T------------------------------------------------------CCAACTGGAGTCACATCTAGCACACCA----CCCCACC-----------------------------------------T------------------------------------------------------------A------------------------------------------------CAACTGCTCATTA--CATTTTTGTTGTCTCTCTTTGGTTGTTTTT--T--------TCACTCTCTTGATTTCCT-TTGCCACAT-TTGTTTTTGGTTTTAT--T--T--CGCATTGA-----------------------------------------TGACGATTGTGTTTG-GGGATATGA---TA-----------------------------------------------------------------ATGATGAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGTGCAGCTGCCGCAGCAC--------
droSim2 x:8013551-8013728 + C----CTC---C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGCTCATTA--CATTTTTGTTGTCTCTCTTTGGTTGTTTT---T--------TCACTCTCTTGATTTCCT-TTGCCACAT-TTGTTTTTGGTTTTAT--T--TCGCGCATTGA-----------------------------------------TGACGATTGTGTTTG-GGGATATGA---AA---------AT--------------------------------------------------------GATGAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGTGCAGCTGCCGCAGCAC--------
droSec2 scaffold_35:291483-291664 + C----ACC---A------------------------------------------------------------------------------------------CC-----------------------------------------T------------------------------------------------------------T------------------------------------------------CAACTGCTCATTA--CATTTTTGTTGTCTCTCTTTGGTTGTTTT---T--------TCACTCTCTTGATTTTCT-TTGCCACAT-TTGTTTTTGTTTT-AT--T--TCGCGCATTGA-----------------------------------------TGACGATTGTGTTTG-GGGATATAA---AA---------AT--------------------------------------------------------GATGAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGTGCAGCTGCCGCAGCAC--------
droYak3 X:12869880-12870038 - T----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTGTCTCTCTTTGGTTTTTTTT-TTGTGT----TTATTCTCTTCATTTTTT-T---------------T---------------------------------------------------------------------------TGTTTG-GGGATATGA---AA---------ATGAA----A-TGAACATTGGATTCTATG-ATC-----------AATGGA---TA-ATGATGAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGCGCCGCTGCCGCAGCACGCA-----
droEre2 scaffold_4690:6669506-6669676 - T----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTGTGTCTCTTTGGTTGTTTT---T--------TCACTCTCTTGATTTCCA-TTGCCACAT-TTGTTTTTGGTTTAAT--T--T--CGCATTGA-----------------------------------------TGACGATTGTGCTTG-GGGATATGA---AA---------ATGAA----C----------------------------------ATTGGA---TT-ATGATGAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGCGCAGCTGCCGCAGCAC--------
dp5 4_group1:4703955-4704172 + C----TCT---C------------------------------------------------------------------------------------------CG-----------------------------------------TTCCTTCTGTTCCCTTTGTAGTCGGCACTCTGCCTCTGTTCCTCCCGCATTAACAAGCCAA-TTTGATGTCTCTGTTGCATCTAGGTCCATTGTCTGTGGAACA---------------------------------------------------------------------------------------------------------------------------------------------GTATTCGGGC--CAGGATGTGGACGATGATGTTGACGT-TGA---------------TGT---------------------------GGT-TGACTGCAG--TGACTCTGAA---TC-GC---CGA------------------------------CGGCGTTGGCTGCAACAGCAGC------GGCGGCGGCAGCA-------GC
droPer2 scaffold_5:513755-513909 - G----CCA---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGATGTCTCTGTTGCATCTAGGTCCATTGTCTGTGGAACA---------------------------------------------------------------------------------------------------------------------------------------------GTATTCGGGC--CAGGATGTGGACGATGATGTTGACGT-TGA---------------TGT---------------------------GGT-TGACTGCAG--TGACTCTGAA---TC-GC---CGA------------------------------CGGCGTTGGCTGCAACAGCAGC------GGCGGCGGCAGCA-------GC
droWil2 scf2_1100000004577:128482-128694 - A----CGC---C------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------TTTGATTACAGAGAGGTTTTTGAAATCACAGTT-TTAGAACATTTTGCAAGTTCTACACAATTAAATTTATCAGTTTC-CTGAATTT-TTTTTTTAATGTTTT-TTCCTTCCTTTATATAA---TGATATGT-GTGTTTTTTTTTCT----T--C--------TA-------------------------------------------------------------------------------------------------------------CCATTTTAG--AGATCCCT-ATTA-TCG-----TT------------------------------ATGATGCGGCTGCCGCAGCTGC------AGCCGCCGCAGCG-------GC
droVir3 scaffold_12970:7112161-7112371 - T----CTT---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTCTTCTAAATTT-ATTTTATTACAAATT----TTCATTTGTTTTTGT-CAACCTTTT-TTGTTTTTGATGA-------------TAATGA-----------------------------------------TGATGATGATCATGG-TGA---TGATGGTGATGATGATGA----TGATGAT---------------------------------------GA-TGA---TGA-TGATGTTGGCACTGATACTGGTGCTGTTTGCAGCTGTGACCACAGCCGCCGGTCATGCTGCCACCGCTGCGCGCAAGGTG
droMoj3 scaffold_6473:16810916-16811092 + T----TTC---A------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------TTATTTATGTACTTT-------------------------------------------------------------------------------TATATATTTACA--TTTTTTTTTTTGT-AAACCTCGTTT------------TAC--------TGTATTGA-----------------------------------------TGATGATGATAATGA-TGGTAATGA---TAATGATGATGA----TGATGAT---------------------------------------GA-TCA---TGA-TGAC-------G---------------TTGCAGCTGTGACCACAGCCGCCGGTCATGCCGCCACAGCTGCGCGCAAGGTG
droGri2 scaffold_14853:9985114-9985300 + T----TTT---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTGTATTG-----TTTTGTTTTTAAATTTTCATTC--------GTTT-TTGTCACAA-TTTTTTTTGTTTTTAA--C----GT-TGATGA-----------------------------------------TCATGATGATGATGA-TGA---TGATGGTGATGATGGTGA----TGATGAT---------------------------------------GA-TGA---TGA-TGAT-------G---------------ATGTAGCTGTGACCACAGCCGCCGGCCATGCCGCCACCGCTGCGCGCAAGGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
G----CTC---C------------------------------------------------------------------------------------------GTTTGAATTAGACATTAAAGTGAGGTTAGG--TTCTTAGGCCC------------------------------------------------------------------------------------------------------------------CCCTCTTTG--TCGTCCTTC-CTTTCTTTTTGTTTGT------T--------TCATTCTCTTGATTTCTTTTTGCCAAAT-TCT----TGCTTTTTTTTC----TC-CGTCGACCTTGGTCTGATGTAACGGTATGACGGT--GTGT---------------GTGTGT--GTGTT------------------------------------------------AT-----------TATTGGA---TA-ATGATGT-TGGG-------G---------------CAGCAGCTGTGGCCACCGCAGCTGCCCGCGCCGCTGCCGCCGCCCGCAAAGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
C----TAT---T-----------------------------------------------------------------------TTGTATCC-----------CTTTGAA---------AAAGTATGGTTAGGAATTC-TAGGGCC------------------------------------------------------------------------------------------------------------------TCCCGTTTG--TTTTCTTTCCTTTTTTTTTTGCTTTT------T--------TCATCCTCTTGATTTCTTTTTGCCA--A-TTATTTTTGGTTTTAT--T--T--C-TTTTGACCATGGTTTGATGTAACGGTATTACGGTATTA---------TCAT-GCTGTGTGT--GGGTT------------------------------------------------TTTATTGGATA-AAATTGGA---TA-ATGATGT-TGGG-------G---------------CAGCAGCTGTGGCCACTGCAGCTGCCCGCGCCGCTGCCGCTGCCCGCAAAGGASizeHit CountTotal NormTotal
No Reads
droKik1
G----CTC---CAAACTGCATGGTATTATCGTTCTTAGGGTTAATCGGTACATTTGATACAGTCAGCTTTATGGGGTTAAGCTGAGCACACCCAATACCC-CCC-----------------------------------------T------------------------------------------------------------T------------------------------------------------A---TCCTGATTA--C-TTTCTGTTTTCTCTCTTTGGTTGTT-----T--------CCACTCTCTTGATTTCTT-GTGTAACAT-TTGTTTTTGGTTTG-T--------CGCATTGA-----------------------------------------TCACCATTGTGTGTGTAC----------------------------------------------------------------------------------GATCGAT-------C---------------CAGTAGCAGTGGCCACTGCAGCTGCACGCGCCGCAGCCGCTGCCC--------SizeHit CountTotal NormTotal
No Reads
droFic1
C----CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTTGTCTCTCTTTGGTTGTT--------------TCA--CTCTTGATTTCTT-TTGCCACAC-TTGTTTTTGGTTTATT--TTTT--CG----------------------------------------------------------T----GGGATGTGA---AT---------ATGAA----T-----------------------------------ATGGA---TA-AT---GAT------------------------------CAGCCGTGGCCACTGCCGCTGCCCGCGCCGCTGCTGCAGCCCGCA-----SizeHit CountTotal NormTotal
No Reads
droEle1
G----TTA---C------------------------------------------------------ATTTCTAGGCTTAAGTCTAGCACCCCA----CCC----------------------------------------------------------------------------------------------------------C------------------------------------------------AAACTTATCATTG--TGATTTTTTTTTATCTCTTTGGTTGTT--------------TCACTCTCTTGATTTCT--TTGCCACAT-TTGTTTTTGGTT------------CGCATTGA-----------------------------------------TGACGATTGTAT----GGGATGTGGTGGAAATAAAA---ATAA----AAAT-------GGATAAAATT-ATTAATGGAAT-ATATTGGA---TA-AC---GAT------------------------------CAGCTGTGGCCACTGCCGCTGCTCGCGCCGCTGCCGCAGCCC--------SizeHit CountTotal NormTotal
No Reads
droRho1
A----CAATTAA------------------------------------------------------CTTTTAATGATTAAGTCTAGTACCCCA----CCC-----------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCCTCATTA--TAATTTAGTTGTCTCTCTTTGGTTGTT--------------TCACTCTCTTGATTTCT--TTGCCACAT-TTGTTTTTGGTTTTTT--TGTT--CTCTTTGA-----------------------------------------TGACGTTTGTGT----GGGATGTGATGGAC---------ATGA----AAAT-------GGATATTATG-ATCAATGGAAT-ATATTGGA---TA-AT---GAA------------------------------CAGCCGTGGCCACTGCCGCTGCTCGCGCCGCTGCCGCAGCCC--------SizeHit CountTotal NormTotal
No Reads
droBia1
C----CCC---A------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------T----------------------------------------------------ATTCTTG--TTATTTCG--TTCTCTCTTTGGTTGTTT----C--------TCACTCTCTTGATTTCTT-TTGCCACGTTTTGTTTTTGGTTT-------------------------------------------------------------GACGATT--------GGGATGTAA---AA---------ATAA----AACT-------GAATAA-ATT-------------ATAATGGA---TA-AT---GAT------------------------------CAGCTGTGGCCACTGCCGCTGCTCGCGCCGCTGCCGCAGCCC--------SizeHit CountTotal NormTotal
No Reads
droTak1
C----T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTTGTCTCTCTTTGGTTGTTT----T--------TCACTCTCTTGATTTCTT-TTGCCGCATTTTGTTTTTGGTTTTAT--C----GC-CATTGA-----------------------------------------TCACGATTGTGTGT--GGGATGTGA---AA---------ATGAA---AAAT-------GGACAA-ATG-------------ATAATGGA---TA-AT---GAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGCGTCGCTGCCGCAGCCCGCAA----SizeHit CountTotal NormTotal
No Reads
droEug1
T----CAC---A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCCTCATTA--CGTTTTTGCTGTCTCTCTTTGGTTGTTTTTTTT--------TCACTCTCTTGATTTCTT-TTGCCACAT-TTGTTTTTGGTTTAAT--------CACATTGA-----------------------------------------TGACGATTGTGTGT--TCGATATGA---AA-----T---ATGAA----AA-----------------------------------CGGA---T--ATAATGAT------------------------------CAGCTGTGGCCACTGCCGCCGCTCGTGCCGCTGCCGCAGCCCGTA-----SizeHit CountTotal NormTotal
No Reads
dm3
TAGAGTTA---T------------------------------------------------------CCAACTGGAGTCACATCTAGCACACCA----CCCCACC-----------------------------------------T------------------------------------------------------------A------------------------------------------------CAACTGCTCATTA--CATTTTTGTTGTCTCTCTTTGGTTGTTTTT--T--------TCACTCTCTTGATTTCCT-TTGCCACAT-TTGTTTTTGGTTTTAT--T--T--CGCATTGA-----------------------------------------TGACGATTGTGTTTG-GGGATATGA---TA-----------------------------------------------------------------ATGATGAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGTGCAGCTGCCGCAGCAC--------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-GGGATATGA---TA-----------------------------------------------------------------ATGATGAT------------------------------CAGC..............................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-GGGATATGA---TA-----------------------------------------------------------------ATGATGAT------------------------------CAGC..............................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
..................................................................................................................................................................................................................................................................................................................................................................................GA-----------------------------------------TGACGATTGTGTTTG-GGGATA.................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTG-GGGATATGA---TA-----------------------------------------------------------------ATGATGAT------------------------------..................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................CTCTTTGGTTGTTTTT--T--------TCACTCTC.....................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTTTGTTGTCTCTCTTTGGTTGTT...........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGACGATTGTGTTTG-GGGATATGA---TA-----------------------------------------------------------------........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------------------------------------------------ATGATGAT------------------------------CAGCTGTGGCCAA.....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................T--CGCATTGA-----------------------------------------TGACGATTGTGTTTG-GGG....................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................TGTCTCTCTTTGGTTGTTTT.........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CC-----------------------------------------T------------------------------------------------------------A------------------------------------------------CAACTGCTCATTA--CATTTTTGT.............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................ATTGA-----------------------------------------TGACGATTGTGTTTG-GGGAT..................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................T--CGCATTGA-----------------------------------------TGACGATTGTGTTTG-G......................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................ACAT-TTGTTTTTGGTTTT..................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTTTG-GGGATATGA---TA-----------------------------------------------------------------ATGATG..................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................TGTCTCTCTTTGGTTGTTTTT--......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................T--CGCATTGA-----------------------------------------TGACGATTGTGTTTG-GG.....................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................TCACTCTCTTGATTTCCC-C.........................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C----CTC---C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGCTCATTA--CATTTTTGTTGTCTCTCTTTGGTTGTTTT---T--------TCACTCTCTTGATTTCCT-TTGCCACAT-TTGTTTTTGGTTTTAT--T--TCGCGCATTGA-----------------------------------------TGACGATTGTGTTTG-GGGATATGA---AA---------AT--------------------------------------------------------GATGAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGTGCAGCTGCCGCAGCAC--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TG-GGGATATGA---AA---------AT--------------------------------------------------------GATGAT------------------------------CAGC..............................................2511.00100000010000000000
droSec2
C----ACC---A------------------------------------------------------------------------------------------CC-----------------------------------------T------------------------------------------------------------T------------------------------------------------CAACTGCTCATTA--CATTTTTGTTGTCTCTCTTTGGTTGTTTT---T--------TCACTCTCTTGATTTTCT-TTGCCACAT-TTGTTTTTGTTTT-AT--T--TCGCGCATTGA-----------------------------------------TGACGATTGTGTTTG-GGGATATAA---AA---------AT--------------------------------------------------------GATGAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGTGCAGCTGCCGCAGCAC--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
T----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTGTCTCTCTTTGGTTTTTTTT-TTGTGT----TTATTCTCTTCATTTTTT-T---------------T---------------------------------------------------------------------------TGTTTG-GGGATATGA---AA---------ATGAA----A-TGAACATTGGATTCTATG-ATC-----------AATGGA---TA-ATGATGAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGCGCCGCTGCCGCAGCACGCA-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TGAACATTGGATTCTATG-ATC-----------AA..................................................................................................2411.00100100000000
droEre2
T----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTGTGTCTCTTTGGTTGTTTT---T--------TCACTCTCTTGATTTCCA-TTGCCACAT-TTGTTTTTGGTTTAAT--T--T--CGCATTGA-----------------------------------------TGACGATTGTGCTTG-GGGATATGA---AA---------ATGAA----C----------------------------------ATTGGA---TT-ATGATGAT------------------------------CAGCTGTGGCCACAGCCGCTGCTCGCGCAGCTGCCGCAGCAC--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................TCCA-TTGCCACAT-TTGTTTTTGGT.....................................................................................................................................................................................................................................................2411.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCCACAGCCGCTGCTCGCGCAGC...................2711.0011000000
dp5
C----TCT---C------------------------------------------------------------------------------------------CG-----------------------------------------TTCCTTCTGTTCCCTTTGTAGTCGGCACTCTGCCTCTGTTCCTCCCGCATTAACAAGCCAA-TTTGATGTCTCTGTTGCATCTAGGTCCATTGTCTGTGGAACA---------------------------------------------------------------------------------------------------------------------------------------------GTATTCGGGC--CAGGATGTGGACGATGATGTTGACGT-TGA---------------TGT---------------------------GGT-TGACTGCAG--TGACTCTGAA---TC-GC---CGA------------------------------CGGCGTTGGCTGCAACAGCAGC------GGCGGCGGCAGCA-------GCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG--TGACTCTGAA---TC-GC---CGA------------------------------CGGC..............................................2511.0010000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------GGCGGCGGCAGCA-------GC18200.0510100000000
droPer2
G----CCA---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGATGTCTCTGTTGCATCTAGGTCCATTGTCTGTGGAACA---------------------------------------------------------------------------------------------------------------------------------------------GTATTCGGGC--CAGGATGTGGACGATGATGTTGACGT-TGA---------------TGT---------------------------GGT-TGACTGCAG--TGACTCTGAA---TC-GC---CGA------------------------------CGGCGTTGGCTGCAACAGCAGC------GGCGGCGGCAGCA-------GCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC------GGCGGCGGCAGCA-------G.20110.091010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC------GGCGGCGGCAGCA-------..19160.061000010
droWil2
A----CGC---C------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------------------------------TTTGATTACAGAGAGGTTTTTGAAATCACAGTT-TTAGAACATTTTGCAAGTTCTACACAATTAAATTTATCAGTTTC-CTGAATTT-TTTTTTTAATGTTTT-TTCCTTCCTTTATATAA---TGATATGT-GTGTTTTTTTTTCT----T--C--------TA-------------------------------------------------------------------------------------------------------------CCATTTTAG--AGATCCCT-ATTA-TCG-----TT------------------------------ATGATGCGGCTGCCGCAGCTGC------AGCCGCCGCAGCG-------GCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTA-TCG-----TT------------------------------ATGATGCGGCT.......................................2013.00320010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-ATTA-TCG-----TT------------------------------ATGATGCGGCT.......................................2211.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTA-TCG-----TT------------------------------ATGATGCGGCTGCC....................................2311.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-TCG-----TT------------------------------ATGATGCGGCTGCC....................................2111.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCT-ATTA-TCG-----TT------------------------------ATGATGC...........................................2311.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCT-ATTA-TCG-----TT------------------------------ATGATGCGGC........................................2611.00100010
droVir3
T----CTT---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTCTTCTAAATTT-ATTTTATTACAAATT----TTCATTTGTTTTTGT-CAACCTTTT-TTGTTTTTGATGA-------------TAATGA-----------------------------------------TGATGATGATCATGG-TGA---TGATGGTGATGATGATGA----TGATGAT---------------------------------------GA-TGA---TGA-TGATGTTGGCACTGATACTGGTGCTGTTTGCAGCTGTGACCACAGCCGCCGGTCATGCTGCCACCGCTGCGCGCAAGGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCTGCCACCGCTGCGCGC......2411.001000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGA----TGATGAT---------------------------------------GA-T.........................................................................................19200.357000000000000000000003000000000000000000400000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGA----TGATGAT---------------------------------------GA-TGA---TGA-T...............................................................................22200.357000000000000000000000000000003000002200000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGA----TGATGAT---------------------------------------G............................................................................................20200.357000000000070000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAT---------------------------------------GA-TGA---TGA-TGATGTT.........................................................................22200.255000000001000000000000000000001030000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCCACCGCTGCGCA.......1840.251000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGATGA----TGATGAT---------------------------------------GA-TGA---....................................................................................25130.233000000001000000000000000000000000200000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGATGA----TGATGAT---------------------------------------GA-..........................................................................................22190.214000001000100001000000000000000000100000000000000000000000000000
.......T---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTCTTCTAAATT...............................................................................................................................................................................................................................................................................................................1850.201001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGA----TGATGAT---------------------------------------GA-TGA---TGA-TGA.............................................................................22200.204000000400000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGATGA----TGATGAT---------------------------------------G............................................................................................21200.153000000000000000000000000000111000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGA----TGATGAT---------------------------------------GA-TGA---TGA-TGA.............................................................................24200.153000000000000000000000030000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA----TGATGAT---------------------------------------GA-TGA---TGA-TGAT............................................................................22200.153000000000000000000000000000003000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TGA---TGATGGTGATGATGT..................................................................................................................................................2090.111000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATGATGATGA----TGATGAT---------------------------------------GA-TGA---....................................................................................2690.111000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGA----TGATGAT---------------------------------------GA-TG........................................................................................23200.102000000020000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATGA-------------TAATGA-----------------------------------------TGATGATGA..............................................................................................................................................................................19200.102000000000000000000000000000200000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATGA-------------TAATGA-----------------------------------------TGATGATGAT.............................................................................................................................................................................20200.102000000000100000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGA----TGATGAT---------------------------------------GA-TGA---TGA-................................................................................20200.102000000000000000000000000000000000200000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAT---------------------------------------GA-TGA---TGA-TGATGT..........................................................................21200.102000000000000000000000000000002000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGATGA----TGATGAT---------------------------------------GA-TGA---TG..................................................................................27120.081000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................A---TGATGGTGATGATGATGA----TGAT.......................................................................................................................................23150.071000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCCACCGCTGCGCCA......19190.051000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA----TGATGAT---------------------------------------GA-TGA---TGA-TGATGTT.........................................................................25200.051000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----TGATGAT---------------------------------------GA-TGA---TGA-TGA.............................................................................20200.051000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATGA----TGATGAT---------------------------------------GA-TGA---....................................................................................22200.051000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TGATGA-------------TAATGA-----------------------------------------TGATGATGA..............................................................................................................................................................................21200.051000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGA----TGATGAT---------------------------------------GA-TGA---TGA-T...............................................................................28200.051000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGA----TGATGAT---------------------------------------GA-TGA---TG..................................................................................20200.051000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGA----TGATGAT---------------------------------------GA-TGA---TG..................................................................................26200.051000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TGATGAT---------------------------------------GA-TGA---TGA-TGATGTT.........................................................................23200.051000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGA----TGATGAT---------------------------------------.............................................................................................19200.051000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAT---------------------------------------GA-TGA---TGA-TGATGT..........................................................................19200.051000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGATGA----TGATGA.....................................................................................................................................19200.051000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGA----TGATGAT---------------------------------------GA-TG........................................................................................18200.051000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----TGATGAT---------------------------------------GA-TGA---TGA-TGATGTTG........................................................................25200.051000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGA----TGATGAT---------------------------------------GA-TGA---TGA-................................................................................27200.051000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGTGATGATGATGA----TG.........................................................................................................................................20200.051000000000000010000000000000000000000000000000000000000000000000
droMoj3
T----TTC---A------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------TTATTTATGTACTTT-------------------------------------------------------------------------------TATATATTTACA--TTTTTTTTTTTGT-AAACCTCGTTT------------TAC--------TGTATTGA-----------------------------------------TGATGATGATAATGA-TGGTAATGA---TAATGATGATGA----TGATGAT---------------------------------------GA-TCA---TGA-TGAC-------G---------------TTGCAGCTGTGACCACAGCCGCCGGTCATGCCGCCACAGCTGCGCGCAAGGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAT---------------------------------------GA-TCA---TGA-TGAC-------G---------------TTGC.................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCACAGCCGCCGGTAG.........................1911.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGATGA----TGATGAT---------------------------------------GA-..........................................................................................20200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TAATGATGATGA----TGATGAT---------------------------------------G............................................................................................21200.051100000
droGri2
T----TTT---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTGTATTG-----TTTTGTTTTTAAATTTTCATTC--------GTTT-TTGTCACAA-TTTTTTTTGTTTTTAA--C----GT-TGATGA-----------------------------------------TCATGATGATGATGA-TGA---TGATGGTGATGATGGTGA----TGATGAT---------------------------------------GA-TGA---TGA-TGAT-------G---------------ATGTAGCTGTGACCACAGCCGCCGGCCATGCCGCCACCGCTGCGCGCAAGGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT---------------------------------------GA-TGA---TGA-TGAT-------G---------------ATGT.................................................20201.1523419
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAT---------------------------------------GA-TGA---TGA-TGAT-------G---------------ATGTA................................................2470.14101

Generated: 05/18/2015 at 03:55 AM