dan_2138

Name	Class	Family	Strand
Helitron-2_DVir	RC	Helitron	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAGTTTATTGAGCCAAATGAAGATGAGGAGTCAAGTAGTTACAGTCTTAGGTAAGTTAAAACTAACGATATTTTTGTTTTTTATACCCTTGCAGATGGTATTATAATTTTGGTTACAAGTATGCAACGCAGTAAAGGAGACATCTCCGACTCTATATATATATACATTCTAGATCAGAATCACCTCCTGAGTCGATATGAGCATGACCGTCAGCCTGTTTCTACGAAAACTAGTCTCTCAGTTTTGAAGCT ************************************************....((((....))))........((((((((.(((..(((((..((..((((......))))..))....)))))....))).))))))))....((((((.............(((((.....)))))........)))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	V055 head	V039 embryo	M058 embryo	V105 male body
..............................................................................................................................................................................................GCCGATATGAGCATGACCGTCAGCCTGT.................................	28	1	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................ATATGAGCATGACCGTCAGCC....................................	21	0	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................ATATGACCGTGACCGTCA.......................................	18	2	2	0.50	1	0	1	0	0	0
..................................................................................................TATTATTCTTTTGGTTACAAGTTTGC...............................................................................................................................	26	3	4	0.25	1	0	0	1	0	0
...................................................................ATATTTTTGTTTATTATACC....................................................................................................................................................................	20	1	6	0.17	1	0	0	0	1	0
..............................................................................................ATGGTATTGTAAGGTTGGTTA........................................................................................................................................	21	3	19	0.05	1	0	0	0	0	1
............................................................................................................................AACGCAGTAAAGGAGACATCTCCTA......................................................................................................	25	1	20	0.05	1	0	0	1	0	0
..............................................GTGGGTAAGTTCAAACTAA..........................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................TCAGTCGGTAAGAGCATGA.............................................	19	3	20	0.05	1	0	0	0	1	0

GTCAAATAACTCGGTTTACTTCTACTCCTCAGTTCATCAATGTCAGAATCCATTCAATTTTGATTGCTATAAAAACAAAAAATATGGGAACGTCTACCATAATATTAAAACCAATGTTCATACGTTGCGTCATTTCCTCTGTAGAGGCTGAGATATATATATATGTAAGATCTAGTCTTAGTGGAGGACTCAGCTATACTCGTACTGGCAGTCGGACAAAGATGCTTTTGATCAGAGAGTCAAAACTTCGA ************************************************....((((....))))........((((((((.(((..(((((..((..((((......))))..))....)))))....))).))))))))....((((((.............(((((.....)))))........)))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V105 male body	V106 head	M044 female body	V039 embryo	V055 head
..........................CCTCAGTTCATCAATGTCAGAATCCAT......................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................TGGAGGACTCAGCTATACT...................................................	19	0	20	0.25	5	0	5	0	0	0	0
.................................................................................................................................................................................TTAGTGGAGGACTCAGCTATAC....................................................	22	0	20	0.20	4	0	4	0	0	0	0
......................................................................................................................................................................................................CTCGTACTAGCAGCCTGACA.................................	20	3	20	0.15	3	3	0	0	0	0	0
.................................................................................................................................................................................TTAGAGGAGGACTCAGCTATAC....................................................	22	1	20	0.15	3	0	1	0	2	0	0
.....................................................................................................................................TTCCTCTGTAGAGGCTGAGAT.................................................................................................	21	0	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................TTCCTCTGTAGAGGCTGAGATA................................................................................................	22	0	20	0.10	2	0	0	2	0	0	0
......................................................................................................................................................................................GGAGGACTCAGCTATACTCGTACTGGC..........................................	27	0	15	0.07	1	1	0	0	0	0	0
..............................................................................................................................................................................GTCTTAGTGGAGGACTCAGCTA.......................................................	22	0	20	0.05	1	0	0	0	0	1	0
.....................................................................................GGGAACGTCTACCATAATATT.................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................................................CAATGATGCTTTTGATCAGAGAGTCAA........	27	1	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................TGGAGGACTCAGCTATACTCG.................................................	21	0	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................TACTCTGTAGAGGCTGAGATAT...............................................................................................	22	1	20	0.05	1	0	0	1	0	0	0
..............................................................................................................................................................................GTCTTAGTGGAGGACTCAGCT........................................................	21	0	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................CTTAGTGGAGGACTCAGCT........................................................	19	0	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................................................TTAGTGGAGGACTCAGCTATACTCGT................................................	26	0	20	0.05	1	0	0	0	1	0	0
.................................................................................................................................................................................TTAGTGGAGGACTCAGCTATACT...................................................	23	0	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................GGAGGACTCAGCCATACTCGTACTG............................................	25	1	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................ACAAAGATGCTTTTGATCAGAGAG............	24	0	20	0.05	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................AAAGATGCTTTTGATCAGAGAGT...........	23	0	20	0.05	1	0	0	0	0	1	0
...................................................................................ATGGGAACGTCTACCATAATA...................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................TTCCTCTGTAGAGGCTGAGATG................................................................................................	22	1	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................TCTTAGTGGAGGACTCAGCTA.......................................................	21	0	20	0.05	1	0	0	1	0	0	0
........................................................................................................................................................................................................................CAAAGATGCTTTTGATCAGAGAGTCAAA.......	28	0	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................TCCTCTGTAGAGGCTGAGATA................................................................................................	21	0	20	0.05	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13272:368266-368516 -	dan_2138	CAGTTT---ATTGAGCC----------------------------AAATGA---AG-----------------A------------------------------------------TGAGGAGTCA---------AGTAGTTACA--------------------GTCTTAGGTAA--GTTAA----------AAC----------TAACGATATTTT----------TGTTTTTTATACCCTT-GC----A-------------GATGGTATTATAATTTTGG--TTA-----CAAGTATGCAACGCAGTAAAGGAGACATCTCCGACTCTATATA-TA------TATACATTCTAGATCAGAATCACCTCCTGAGTCGATATGAGCATGACCGTCAGCCT--------G----TTTCTACGAAAACTAGTCTCTCAG----TTTTGAAGCT
droBip1	scf7180000395222:13026-13269 +		CAATTT---ATTGGAAT--ACC--AAAAAAAGAA-------------------------AAAAA------------------TCACAAGCT-------TC----------------------------------G----------AT-C-------------------TT------AA-----AAAATACCAAGTT--------------------TG----------GTATTTTTATACCCTT-GC----A-------------GAGGGTATTATAATTTTGG--TCA-----AAAGTGTGCAACGCAGTAAAGGAGACATCTCCGACCCTATAAAGTA------TATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCT--------G----TTTCTACGCAAACTAGTCTCTCAG----TTTTAACGCT
droKik1	scf7180000302441:3018282-3018537 +		CAAATT---ATGCAACC----------------------------AAAACG---AG-----------------AACAAGGGGGGGTAGCTT-------CC---------------------------------------------GTTT-------------------TC------A------G-TATAGCGAATA---------------TTTAAAT----------ACCTTTTTATACCCTT-GC----A---------------GGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTTAAGGAGACGTTTCCGACCCTATAAAGTA------TATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTGGCCATGTCCGTCCGTCTGTCCGTCTGTCCGTTTCTACGCAAACTAGTCCCTCAG----TTTTAAAGCT
droFic1	scf7180000453205:5979-6234 -		CAATCT---ACCCTTGC----------------------------GGCCATCAAAT-----------------A------------------------------------------TGACGAACAA---------AATCCATAAA--------------------G------------GCTAATCAACATCGAAGCTAC---------ATACATAAGT----------CGATTTTTATACCCTT-GC----A-------------AAGGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACACAGTAAAGGAGACACCTCAGACCCCATAAAGCA------TATATAATCTTGAGCAGCATTACGATCTGAATCGTAACACCTCTGTCCGTCTGTCT--------G----TTTCTATGTAAACAAGTCTCTCAG----TTTTAAAGCT
droEle1	scf7180000490143:9482-9727 -		CACTTT---TCATAATAATATG--AA----------------------AA-------------------------------------------------------------------GAAGAATTA---------AATAATTACA--------------------T------------GTTAATTACC-------------------AACAATAAATT----------AATTTTTTATAGCCTT-GC----A-------------GAGGGTATTATAATTTCAG--CCA-----GAAGTTTGCAACGCAGTTAAGGAGACGTTTCCGACCCTATAAATTA------TATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTTTGTCCGTCC----G----TTTCTACGCAAACTTGTATCTCAG----TTTTAAAGCT
droRho1	scf7180000777315:20418-20659 -		GTTTTT---CGTA-ACAA-AGA--AA-----A------------------------------------------------------------------------------------CGGGGAATCACTTAATTC-AGTC------GTTATA--------------ATCTTAA-----------TATATA------------------AGCA-----------------ATATTTTTATACCCTT-GC----A-------------GA-GGTATTATAATTTTGG--TCA-----AAAGTGTGCAACGCAGTGAAGGAGACACCTCCGACCCTATAAAGTA------TATATATTCTTGATCAGGATCGCCTCCTGAGTTGATATAAGCATGTCCGTCTGTCT--------G----TTTCTACGCAAACTAGTCTCTCAG----TTTTAAAGAT
droBia1	scf7180000302291:2202484-2202727 +		AGCCAA-----------------------------------------ATAA---AG-----------------AA------------------------TGTTATTTC--CAAG--CGTA---------------GGAC------GTTATA--------------A------------GTTAAAAAACACCGAAAA--------------------TA----------TAATTTTTATACCCTT-GC----A-------------GAGGGTATAATGATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACGTTTTCGACCCCATAAAGTA------TATATATTCTTGATCAGCGTCACAAGACGAGTCGATCTAGCCATGTCCGTCTGTCCGTCC----G----TTTCTACGCAAACTAGTCTCTAAG----TTTTGAAGCT
droTak1	scf7180000412778:6675-6917 -		TTT------GTGAAACC----------------------------AAATTT--------------------------------------------ATT---TTGTT-GAGA---AATA---------------------------------ATGTAGAAACT---GTC------------TGA----------ACC----------TAACATACATTC----------TTATTTTTATACCCTT-GT----A-------------GAGGGTATTATAATTTCAG--TCA-----GATGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCACATAAAGTA------TATATATTCTGGATCAGCACCAATAGCCGAGTCTATCTAGCCATGTCCGTCTGTCC--------G----TTTCTATGCGAACTAGTCTCTCAG----TTTTAAAGCC
droEug1	scf7180000409542:517417-517655 -		ATCAAGATGGAG---AT----------------------------CAGAAC-------------T-----TAT----------------------ATC---TTATTTG--A---AAAG---------------------------------CTGAAGAGA--------------------------------------------------------AT----------GTCTTTTTATACCCGTTACTCGTA------G-AGTAAAAGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGATCGAAGGAAGCGTTTGCGACCCTATAAAGTA------TATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGGGCCATGTCCGTCTGTCC--------G----TCCGTCCGTCCGTCCGTCCGTCCG----TATGAACGCT
dm3	chrX:22251474-22251725 -		CAGTTT---ATCTGAAT--ACAATTA-----GTAAGTAGTCAAATAATAAA-------------TAACATTAT----------------------GTG---TTGTT-G-----------------------------------------------------------------------AAAA-----AGT---------------GAAAAAAATCTC----------GTATTTTTATACCCGTTACTCGTA------G-AGTAAAATGGTATACTAGATTCTT--TGA-----AAGGTATGTAACAGGCAGAAGGAAGCGTTTTCGATTATATAAAGTA------TATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGACATGTC-GTCTGTCC--------G----TAT----GAACGTCGGGATCTCAG--------------
droSim2	x:20834677-20834914 -		TATTTT---GTTAGATGA--------AATGTGAA-------------------------CGAAT------------------AGATATTTA-------CC----------------------------------C----------AT-T-------------------TA------AG-----AATAAATCAAATCTATAATTTTC----------G----GGCT---ACCATTTTATACGCGTTGCTCGTA------G-AGTAAAAGGGTATACTAAATTCGT--TGA-----AAAGTGTGTAACAGGCAGAAGGAAGCGTTTCCGACTGTATAAAATA------TATATATTCTTGATCAGGATCAATTGCCAAGTCGATGTAGCCATGTCCGTCGGTCT--------G----ACTGTGCG------------------------------
droSec2	scaffold_39:334349-334573 -		TATTTT---GTTAGATGA--------AATGTGAA-------------------------CGAAT------------------AGATATTTA-------CC----------------------------------C----------AT-T-------------------TA------AG-----AATAAATCAAATCTATAATTTTC----------G----GGCT---ACCATTTTATACGCGTTGC--------------------TCGTATACTAAATTCGT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACTGTATAAAATA------TATATATTCTTGATCAGGATCAATTGCCAAGTCCATGTAGCCATGTCCGTCGGTCT--------G----ACTGTGCG------------------------------
droYak3	4:1138063-1138303 +		AGCAA---------------------AATGTAAAAGAAGTCAAAT------------------------------------------GTTA-------CAGT--TTTG--CAC-----T----------------------------------------------------GGGGT--GATAT----------ATT----------AAACGA----------------TAATTTTTATACCCGTTACTCGTA------G-AGTAAAAGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTA------TATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCTGTCT--------G----TTTGTCCGTCCGTCCGTCTGTCCG----T-------CT
droEre2	scaffold_4784:24407869-24408159 +		AAGTAT---AAAGAATT----------------------------AAATAA---AG-----------------ATCAAGGAACGAGAACTTCTAAGTGTTGTTATTGG--TAAG--CGGGTGATCA--------C----------GT-T-------------------TA------AG-----A--------------TAAATTTG----------G----TGG----CACTTTTTAAGCCCGTTACTAGAT----AAA-A----ACATATATACTAGATTCGT--TTA-----AAGGTATGTAACAGACAGAAGGAAACGTTTCCGACCATATAATATA------TATATATTCTTGATCAGGATCAATAGTCGAGTCGATCTGGCCATGTCAGTCTGTCCGTCCGTCTG----CCCGTATGAACACCTCGATCTCAGAAACTACAAAAGCT
dp5	3:12682123-12682354 -		AAGTAA---TT-AAACG---AT--AAAAC----------------AAAAGA--------------------------------------------------------------------------------------------------------------------------------------------AAAACTACACTTTTT----------T------------GGTATTTATACCCGATACTCAAA----ATG-AGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTA------TATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCC--------G----TCTGTCCGTCCGTCCGTCTGTCCG----T-------CT
droPer2	scaffold_10903:352-595 +		CATTTT---TTTAATCC----------------------------AAAGGGGAGACGTGTGAAT------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTTTTT----------T----CGATATCTGATTTTTATACCCGATACTCAAA----ATG-AGTATTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGCGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTA------TATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCC--------G----TCT-----------------------------------
droWil2	scf2_1100000004762:436164-436400 +		TTGTTA---ATTAAATT----------------------------AAAAAG-------------TATC-----ATCAAGG------------------------------------------------------------------------------------------AAGTAA--GGTAA-----ATT---------------GAATATAAATTT----------GAATTGTTATACCCTT-GC----A-----------AAAAGGGTATATTAATTTTGG--TTA-----GAAGTCTGCAACGCATAGAAAGAAGCATCTCCGACCATATAAAGTA------TATATATTCTTGATCAGCACGACGAGACGAGTTCAAATAGCCATGTCCGTCCGTCT--------G----GATCAACGCAAACTCCTCCTAGAC----CGTTAAAGCT
droVir3	scaffold_13324:2503022-2503260 -		AAGACG---GGG-------------------------------------------------------------------------------------------------------------TTTCG---------GGAAGTTCCA--------------------CCCGCAAGTGT--GGAAA-----AAT---------------CGAAAAACGTTTGTATAA----AACTTTTTATACCCTT-GC----A-------------GAGGGTATTATAATTTTGT--CGT-----GAAATGTGTAACGCATAGAAGGAGATATCTCCGACCCCATAAAGTA------TATATATTCTTAACCAGCATCAACAGCCGAGTCGATATAGCCATGTGCGTCTGTCT--------G----TTTCTATGCGAACTAGTCTCTCAG----TTTTAAAGCT
droMoj3	scaffold_6101:5760-6024 -		CCTTGA---ATTATTGA----------------------------GCCA-----AT-------TTCACG----TT------------------------TTTTAT---------------------------------------T--------------------GTTCCAAGTCA--CATAA----------ACC----------ACACGATTACTT----------TTATTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTG---TGA-----AAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTA------TATATATTCTTAATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCC--------G----TCCGTATGAGCAAAAGGATCTCAGAAGTTATAAGAGCT
droGri2	scaffold_14853:4789008-4789236 -		CGAACG---AA------------------------------------AGAA---A-----------------------------------------------------------AATG---------------------------------CCGAAGGAATTGTATTCCTAG------------------------------------ATAGAAGTGT----------TTCCTTCAGTAAACTT-GC----A-------------GAGCGTTTCATAATTTTGT--CCA-----CCAGTTTGTAATGCGTTGAAGAAATCATCTCTGATCCCATAAAGTATATATGTATATATTATATATCAGCATCACTAGTCGATTTTGTATAGCTATGTCCA---GTCT--------G----TTTCTATGCATTCTAGACTCTAAT----TATTATAACT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CAGTTT---ATTGAGCC----------------------------AAATGA---AG-----------------A------------------------------------------TGAGGAGTCA---------AGTAGTTACA--------------------GTCTTAGGTAA--GTTAA----------AAC----------TAACGATATTTT----------TGTTTTTTATACCCTT-GC----A-------------GATGGTATTATAATTTTGG--TTA-----CAAGTATGCAACGCAGTAAAGGAGACATCTCCGACTCTATATA-TA------TATACATTCTAGATCAGAATCACCTCCTGAGTCGATATGAGCATGACCGTCAGCCT--------G----TTTCTACGAAAACTAGTCTCTCAG----TTTTGAAGCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................................................................................................................................................ATATGAGCATGACCGTCAGCC....................................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

CAATTT---ATTGGAAT--ACC--AAAAAAAGAA-------------------------AAAAA------------------TCACAAGCT-------TC----------------------------------G----------AT-C-------------------TT------AA-----AAAATACCAAGTT--------------------TG----------GTATTTTTATACCCTT-GC----A-------------GAGGGTATTATAATTTTGG--TCA-----AAAGTGTGCAACGCAGTAAAGGAGACATCTCCGACCCTATAAAGTA------TATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCT--------G----TTTCTACGCAAACTAGTCTCTCAG----TTTTAACGCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAAATT---ATGCAACC----------------------------AAAACG---AG-----------------AACAAGGGGGGGTAGCTT-------CC---------------------------------------------GTTT-------------------TC------A------G-TATAGCGAATA---------------TTTAAAT----------ACCTTTTTATACCCTT-GC----A---------------GGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTTAAGGAGACGTTTCCGACCCTATAAAGTA------TATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTGGCCATGTCCGTCCGTCTGTCCGTCTGTCCGTTTCTACGCAAACTAGTCCCTCAG----TTTTAAAGCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAATCT---ACCCTTGC----------------------------GGCCATCAAAT-----------------A------------------------------------------TGACGAACAA---------AATCCATAAA--------------------G------------GCTAATCAACATCGAAGCTAC---------ATACATAAGT----------CGATTTTTATACCCTT-GC----A-------------AAGGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACACAGTAAAGGAGACACCTCAGACCCCATAAAGCA------TATATAATCTTGAGCAGCATTACGATCTGAATCGTAACACCTCTGTCCGTCTGTCT--------G----TTTCTATGTAAACAAGTCTCTCAG----TTTTAAAGCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CACTTT---TCATAATAATATG--AA----------------------AA-------------------------------------------------------------------GAAGAATTA---------AATAATTACA--------------------T------------GTTAATTACC-------------------AACAATAAATT----------AATTTTTTATAGCCTT-GC----A-------------GAGGGTATTATAATTTCAG--CCA-----GAAGTTTGCAACGCAGTTAAGGAGACGTTTCCGACCCTATAAATTA------TATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTTTGTCCGTCC----G----TTTCTACGCAAACTTGTATCTCAG----TTTTAAAGCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTTTTT---CGTA-ACAA-AGA--AA-----A------------------------------------------------------------------------------------CGGGGAATCACTTAATTC-AGTC------GTTATA--------------ATCTTAA-----------TATATA------------------AGCA-----------------ATATTTTTATACCCTT-GC----A-------------GA-GGTATTATAATTTTGG--TCA-----AAAGTGTGCAACGCAGTGAAGGAGACACCTCCGACCCTATAAAGTA------TATATATTCTTGATCAGGATCGCCTCCTGAGTTGATATAAGCATGTCCGTCTGTCT--------G----TTTCTACGCAAACTAGTCTCTCAG----TTTTAAAGAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCCAA-----------------------------------------ATAA---AG-----------------AA------------------------TGTTATTTC--CAAG--CGTA---------------GGAC------GTTATA--------------A------------GTTAAAAAACACCGAAAA--------------------TA----------TAATTTTTATACCCTT-GC----A-------------GAGGGTATAATGATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACGTTTTCGACCCCATAAAGTA------TATATATTCTTGATCAGCGTCACAAGACGAGTCGATCTAGCCATGTCCGTCTGTCCGTCC----G----TTTCTACGCAAACTAGTCTCTAAG----TTTTGAAGCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTT------GTGAAACC----------------------------AAATTT--------------------------------------------ATT---TTGTT-GAGA---AATA---------------------------------ATGTAGAAACT---GTC------------TGA----------ACC----------TAACATACATTC----------TTATTTTTATACCCTT-GT----A-------------GAGGGTATTATAATTTCAG--TCA-----GATGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCACATAAAGTA------TATATATTCTGGATCAGCACCAATAGCCGAGTCTATCTAGCCATGTCCGTCTGTCC--------G----TTTCTATGCGAACTAGTCTCTCAG----TTTTAAAGCC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATCAAGATGGAG---AT----------------------------CAGAAC-------------T-----TAT----------------------ATC---TTATTTG--A---AAAG---------------------------------CTGAAGAGA--------------------------------------------------------AT----------GTCTTTTTATACCCGTTACTCGTA------G-AGTAAAAGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGATCGAAGGAAGCGTTTGCGACCCTATAAAGTA------TATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGGGCCATGTCCGTCTGTCC--------G----TCCGTCCGTCCGTCCGTCCGTCCG----TATGAACGCT	Size	Hit Count	Total Norm	Total
No Reads

dm3

CAGTTT---ATCTGAAT--ACAATTA-----GTAAGTAGTCAAATAATAAA-------------TAACATTAT----------------------GTG---TTGTT-G-----------------------------------------------------------------------AAAA-----AGT---------------GAAAAAAATCTC----------GTATTTTTATACCCGTTACTCGTA------G-AGTAAAATGGTATACTAGATTCTT--TGA-----AAGGTATGTAACAGGCAGAAGGAAGCGTTTTCGATTATATAAAGTA------TATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGACATGTC-GTCTGTCC--------G----TAT----GAACGTCGGGATCTCAG--------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................TGTC-GTCTGTCC--------G----TAT----GAACGTCGGGA....................	27	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TC-GTCTGTCC--------G----TAT----GAACGTCGGGA....................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CATGTC-GTCTGTCC--------G----TAT----GAACGTCG.......................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TT--TGA-----AAGGTATGTAACAGGC...............................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGT...........................................................................	23	20	2.70	54	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TCTT--TGA-----AAGGTATGTAACAGGCAGA............................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGATCTGGA..................................................................	26	3	2.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTGGACATGTC-GTCTGT.....................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTGGACATGTC-GTC........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTGGACATGTC-GTCT.......................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................................................GTA------G-AGTAAAATGGTATACT.................................................................................................................................................................................	20	18	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGT...........................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAG......................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCC--------G----TAT----GAACGTCG.......................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TCGTA------G-AGTAAAATGGTATACTAGA..............................................................................................................................................................................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTC..........................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSim2

TATTTT---GTTAGATGA--------AATGTGAA-------------------------CGAAT------------------AGATATTTA-------CC----------------------------------C----------AT-T-------------------TA------AG-----AATAAATCAAATCTATAATTTTC----------G----GGCT---ACCATTTTATACGCGTTGCTCGTA------G-AGTAAAAGGGTATACTAAATTCGT--TGA-----AAAGTGTGTAACAGGCAGAAGGAAGCGTTTCCGACTGTATAAAATA------TATATATTCTTGATCAGGATCAATTGCCAAGTCGATGTAGCCATGTCCGTCGGTCT--------G----ACTGTGCG------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................................................................................................................................A-----AAAGTGTGTAACAGGCAGAAGGA........................................................................................................................................	24	4	2.50	10	0	0	0	0	0	0	5	0	1	0	3	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATTGCCAAGTCGATGTAGCC.................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGA-----AAAGTGTGTAACAGGCAGAAGGA........................................................................................................................................	26	3	1.00	3	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATTGCCAAGTCGATGT.....................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TGCCAAGTCGATGTAGCCATGTCCGTC........................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GATCAATTGCCAAGTCGATGTAGC..................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TGTAGCCATGTCCGTCGGTCT--------G----ACTG..................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATTGCCAAGTCGATGTA....................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TCCGACTGTATAAAATA------TATATAT....................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AGGAAGCGTTTCCGACTGTATAAAATA------...........................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................A-----AAAGTGTGTAACAGGCAGAAGGAA.......................................................................................................................................	25	4	0.75	3	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GTGTGTAACAGGCAGAAGGAAGCGT...................................................................................................................................	25	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TGTGTAACAGGCAGAAGGAAGCGT...................................................................................................................................	24	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GTGTGTAACAGGCAGAAGGAA.......................................................................................................................................	21	5	0.60	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................A-----AAAGTGTGTAACAGGCAGAAGGAAG......................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GAAGGAAGCGTTTCCGACTGTATA......................................................................................................................	24	7	0.43	3	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TGTGTAACAGGCAGAAGGAAGCG....................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TGTGTAACAGGCAGAAGGAAGCGTT..................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TTCGT--TGA-----AAAGTGTGTAACAGG................................................................................................................................................	23	8	0.25	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TCGTA------G-AGTAAAAGGGTATACTAAA..............................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................A------TATATATTCTTGATCAGGATCAATT..................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................TTCGT--TGA-----AAAGTGTGTAACAGGC...............................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATTGCC...............................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GTGTGTAACAGGCAGAAGGA........................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TA------G-AGTAAAAGGGTATAC..................................................................................................................................................................................	18	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................A-----AAAGTGTGTAACAGGCAGAAGG.........................................................................................................................................	23	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATA------TATATATTCTTGATCAGGATC......................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TCGT--TGA-----AAAGTGTGTAACAGGCA..............................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GTGTGTAACAGGCAGAAGG.........................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TAAAATA------TATATATTCTTGATCAGGA........................................................................................	26	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GGTATACTAAATTCGT--TG.....................................................................................................................................................................	18	18	0.11	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAA....................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................A-----AAAGTGTGTAACAGGCAGAAGGACA......................................................................................................................................	26	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTTTCC...............................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................A------G-AGTAAAAGGGTATACT.................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTT..................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATA------TATATATTCTTGATCAGGAT.......................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TA------TATATATTCTTGATCAGG.........................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................G-AGTAAAAGGGTATAC..................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................G-AGTAAAAGGGTATACT.................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................G-AGTAAAAGGGTATACTA................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGG.........................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

TATTTT---GTTAGATGA--------AATGTGAA-------------------------CGAAT------------------AGATATTTA-------CC----------------------------------C----------AT-T-------------------TA------AG-----AATAAATCAAATCTATAATTTTC----------G----GGCT---ACCATTTTATACGCGTTGC--------------------TCGTATACTAAATTCGT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACTGTATAAAATA------TATATATTCTTGATCAGGATCAATTGCCAAGTCCATGTAGCCATGTCCGTCGGTCT--------G----ACTGTGCG------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................................................................................TTCGT--TGA-----AAAGTATGTAACAGGCA..............................................................................................................................................	25	20	0.10	2	0	0	2	0

droYak3

AGCAA---------------------AATGTAAAAGAAGTCAAAT------------------------------------------GTTA-------CAGT--TTTG--CAC-----T----------------------------------------------------GGGGT--GATAT----------ATT----------AAACGA----------------TAATTTTTATACCCGTTACTCGTA------G-AGTAAAAGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTA------TATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCTGTCT--------G----TTTGTCCGTCCGTCCGTCTGTCCG----T-------CT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................TCAAAT------------------------------------------GTTA-------CAGT--TTTG--CAC-----T----------------------------------------------------GGGG......................................................................................................................................................................................................................................................................................	26	16	0.94	15	0	3	0	0	0	0	0	0	0	0	12
.......................................TCAAAT------------------------------------------GTTA-------CAGT--TTTG--CAC-----T----------------------------------------------------GGGGT--...................................................................................................................................................................................................................................................................................	27	16	0.38	6	0	0	0	0	0	0	0	0	0	0	6
..............................TAAAAGAAGTCAAAT------------------------------------------GTTA-------CAGT--TT...........................................................................................................................................................................................................................................................................................................................................................	25	16	0.31	5	0	5	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGT...........................................................................	26	20	0.25	5	0	0	0	5	0	0	0	0	0	0	0
............................................T------------------------------------------GTTA-------CAGT--TTTG--CAC-----T----------------------------------------------------GGGGT--GATA...............................................................................................................................................................................................................................................................................	26	12	0.25	3	0	2	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATTTGGCCATGTCCGTCTG......................................................	26	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCATGTCCGTCTGTC....................................................	21	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.......................................TCAAAT------------------------------------------GTTA-------CAGT--TTTG--CAC-----T----------------------------------------------------GGGGA--...................................................................................................................................................................................................................................................................................	27	16	0.13	2	0	0	0	0	0	0	0	0	0	0	2
................................................................................................................C-----T----------------------------------------------------GGGGT--GATAT----------ATT----------AAACGA----------------.................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCG.........................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TACTCGTA------G-AGTAAAAGGGTATACTA................................................................................................................................................................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGT--TGA-----AAAGT..........................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCAGAAGGAAGCGT...................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
..........................................................................................................................................................................................................................................TTATACCCGTTACTCGTA------G-AGTAAA...........................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................A-------CAGT--TTTG--CAC-----T----------------------------------------------------GGGGT--GATAT----------AT..................................................................................................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................T--TTTG--CAC-----T----------------------------------------------------GGGGT--GATAT----------AT..................................................................................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................TA-------CAGT--TTTG--CAC-----T----------------------------------------------------GGGGT--GATAT----------A...................................................................................................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................CAGT--TTTG--CAC-----T----------------------------------------------------GGGGT--GATA...............................................................................................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................TAAAAGAAGTCAAAT------------------------------------------GTTA-------CAGT--.............................................................................................................................................................................................................................................................................................................................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
............................TGTAAAAGAAGTCAAAT------------------------------------------GTTA-------CAGT--TT...........................................................................................................................................................................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...................................GAAGTCAAAT------------------------------------------GTTA-------CAGT--TTTG--CA.....................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................TTA-------CAGT--TTTG--CAC-----T----------------------------------------------------GGGG......................................................................................................................................................................................................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................TA-------CAGT--TTTG--CAC-----T----------------------------------------------------GGGGT--GA.................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................AGT--TTTG--CAC-----T----------------------------------------------------GGGGT--GA.................................................................................................................................................................................................................................................................................	18	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
..............................TAAAAGAAGTCAAAT------------------------------------------GTTA-------C..................................................................................................................................................................................................................................................................................................................................................................	20	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.....................................AGTCAAAT------------------------------------------GTTA-------CAGT--TTTG--C......................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCCGTCCGTCTGTCC...............	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCATGTCCGTCTGTCT--------G----T.....................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TCGATTTGGCCATGTCCGTCTGTCT--------...........................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GGATCAATAGCCGAGTCGATTTGGCC.................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AGATTCGT--TGA-----AAAGTATGTAACAGG................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCGTTTCC...............................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................TCGATTTGGCCATGTCCGTCTGTCT--------G----......................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATTTGGCCATG..............................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AAGTAT---AAAGAATT----------------------------AAATAA---AG-----------------ATCAAGGAACGAGAACTTCTAAGTGTTGTTATTGG--TAAG--CGGGTGATCA--------C----------GT-T-------------------TA------AG-----A--------------TAAATTTG----------G----TGG----CACTTTTTAAGCCCGTTACTAGAT----AAA-A----ACATATATACTAGATTCGT--TTA-----AAGGTATGTAACAGACAGAAGGAAACGTTTCCGACCATATAATATA------TATATATTCTTGATCAGGATCAATAGTCGAGTCGATCTGGCCATGTCAGTCTGTCCGTCCGTCTG----CCCGTATGAACACCTCGATCTCAGAAACTACAAAAGCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACACCTCGATCTCAGAAACT.........	25	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTGGCCATGTCAGT.........................................................	21	7	0.14	1	1	0	0	0	0	0	0

dp5

AAGTAA---TT-AAACG---AT--AAAAC----------------AAAAGA--------------------------------------------------------------------------------------------------------------------------------------------AAAACTACACTTTTT----------T------------GGTATTTATACCCGATACTCAAA----ATG-AGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTA------TATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCC--------G----TCTGTCCGTCCGTCCGTCTGTCCG----T-------CT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................GATTGAGCCATGTCTGTCTG......................................................	20	20	0.85	17	0	17	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCG..............................................................................................................................	20	20	0.80	16	0	0	0	0	0	0	16	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCTGTCC--------G----TCTGTCCGTC............................	24	20	0.65	13	0	13	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGAGC..................................................................	19	20	0.40	8	0	8	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................AAAGTGGATGTGTGTAACGTC................................................................................................................................................	21	20	0.35	7	0	0	0	0	0	7	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGA.............................................................................	21	20	0.35	7	0	0	0	0	7	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCCG..............................................................................	27	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TTTATACCCGATACTCAAA----ATG-AGT..............................................................................................................................................................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................CAGAAGGAATCGTTTCCGACCCCAT.......................................................................................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCC--------G----TCTGTC................................	27	20	0.20	4	0	0	0	0	0	0	0	0	4	0
..............................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCC--------G----TCTG..................................	25	20	0.15	3	0	0	3	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAA....................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCC--------G----TCT...................................	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0
..................................................................................................................................................................................................................................................................G-AGTATTGGGGTATATTAG...............................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	3	0
......................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCCATGTCTG..........................................................	21	20	0.15	3	0	0	0	0	0	0	3	0	0	0
..................................................................................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGGATG...........................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.........................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGTAA....................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	2	0	0	0
..................................................................................................................................................................................................................................................GATACTCAAA----ATG-AGTATTGGG........................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATT......................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGAGCCATGT.............................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................GATTGAGCCATGTCTGTCTGTC....................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCC--------G----TCTGTCCGTC............................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CTGTCC--------G----TCTGTCCGTCCGTCC.......................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................AGAAGGAATCGTTTCCGACCCCATAAAG...................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TAAAAGTGGATGTGTGTAACGTC................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GAGCCATGTCTGTCTGTCC--------G----T.....................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................AGAAGGAATCGTTTCCGAC............................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATTGAGCCATGTCTGT.........................................................	24	20	0.05	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGGATGT..........................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCCATGT.............................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TGTGTGTAACGTCCAGAAG..........................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

CATTTT---TTTAATCC----------------------------AAAGGGGAGACGTGTGAAT------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTTTTT----------T----CGATATCTGATTTTTATACCCGATACTCAAA----ATG-AGTATTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGCGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTA------TATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCC--------G----TCT-----------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................TGTGAAT------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------.....................................................................................................................................................................................................................................................................................	26	1	11.00	11	0	11	0	0	0	0
..............TCC----------------------------AAAGGGGAGACGTGTGAAT------------------TCGTAT.............................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	2	0	0	0	1
........................................................................................TTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTT..........................................................................................................................................................................................................................................................	27	4	2.50	10	0	9	0	0	0	1
...............................................................T------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------.................................................................................................................................................................................................................................................................	27	4	2.00	8	0	5	0	0	0	3
........................................................................................TTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGT...........................................................................................................................................................................................................................................................	26	4	1.50	6	0	6	0	0	0	0
.........................................................................................TA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTT..........................................................................................................................................................................................................................................................	26	4	1.50	6	0	6	0	0	0	0
.........................................................................................TA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGT...........................................................................................................................................................................................................................................................	25	4	1.25	5	0	5	0	0	0	0
.........................................................TGTGAAT------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------A....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..............TCC----------------------------AAAGGGGAGACGTGTGAAT------------------TCGT...............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...............CC----------------------------AAAGGGGAGACGTGTGAAT------------------TCGTAT.............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..............TCC----------------------------AAAGGGGAGACGTGTGAAT------------------TCG................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................TGTGAAT------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------T....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.............................................AAAGGGGAGACGTGTGAAT------------------TCGTAT.............................................................................................................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	2	0	0	0	0
.........................................................TGTGAAT------------------TCGTATTTA-------CCGTTGTT-..........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCC...............................................................................................................................	21	20	0.80	16	0	0	0	0	0	16
..................................................................................TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------.................................................................................................................................................................................................................................................................	26	4	0.75	3	0	3	0	0	0	0
.........................................................................................TA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTTT.........................................................................................................................................................................................................................................................	27	4	0.75	3	0	3	0	0	0	0
...........................................................TGAAT------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------.....................................................................................................................................................................................................................................................................................	24	3	0.67	2	0	2	0	0	0	0
..............................................AAGGGGAGACGTGTGAAT------------------TCGTAT.............................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
...............................................AGGGGAGACGTGTGAAT------------------TCGTATT............................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
..................................................................................TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------T................................................................................................................................................................................................................................................................	27	4	0.50	2	0	2	0	0	0	0
..............TCC----------------------------AAAGGGGAGACGTGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
...................................................................................CGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GA............................................................................................................................................................................................................................................................................	22	4	0.50	2	0	2	0	0	0	0
...............................................................T------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------T................................................................................................................................................................................................................................................................	28	4	0.50	2	0	2	0	0	0	0
.............................................................AAT------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGA..........................................................................................................................................................................................................................................................................	28	3	0.33	1	0	1	0	0	0	0
............................................................GAAT------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GA............................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	1
...........................................................TGAAT------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----G.............................................................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
............................................................GAAT------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------.....................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0
...........................................................TGAAT------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------T....................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
.........................................................................................TA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAG............................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
........................................................................................TTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTTT.........................................................................................................................................................................................................................................................	28	4	0.25	1	0	0	0	0	0	1
..........................................................................................A-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTTT.........................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0
....................................................................................GTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------T................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
...............................................................T------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----..............................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0
...................................................................................CGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAG...........................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0
....................................................................................GTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------.................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
................................................................................................................................................................................TG-----GAGAA--------TGCAGTTTTT----------T----CGATATCTG...............................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
.......................................................................................TTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTT..........................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0
...............................................................T------------------TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAG--------.................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	1
.........................................................................................................T-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTTTTT----------T----CGATA...................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0
....................................................................................................................................................................................................TGCAGTTTTT----------T----CGATATCTGATTTT..........................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
.......................................................................................TTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAG............................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0
......................................................................................................TGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTTTTT----------T----CGA.....................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
..................................................................................TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TG...............................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0
........................................................................................................TT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTTTTT----------T----CGATA...................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
................................................................................................................................................................................TG-----GAGAA--------TGCAGTTTTT----------T----CGATATCTGAT.............................................................................................................................................................................................................................	29	4	0.25	1	0	1	0	0	0	0
..................................................................................TCGTATTTA-------CCGTTGTT-G-------------------------------------------------------------A------.....................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0
......................................................................................ATTTA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAG............................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................AGTATTGGGGTATATTAGATT............................................................................................................................................................................	21	20	0.25	5	0	0	0	0	0	5
................................................................................................................................................................................TG-----GAGAA--------TGCAGTTTTT----------T----CGATATC.................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
.........................................................................................TA-------CCGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTTTT........................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................GATTTGTGGTGAAAATGGATGTGC........................................................................................................................................................	24	4	0.25	1	0	0	0	0	0	1
...................................................................................................CGTTGTT-G-------------------------------------------------------------A------TG-----GAGAA--------TGCAGTT..........................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTC..........................................................................	20	20	0.15	3	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTG.........................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	3
............................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCCATGTCTGTCTGT.....................................................	20	20	0.10	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................................TATATTAGATTTGTGGTGAAAATG...............................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GTGCGTAACGTCCAGAAGGAATCGTTT.................................................................................................................................	27	13	0.08	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AACGTCCAGAAGGAATCGTTTCCGACCCC.........................................................................................................................	29	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCTGTCTGTC....................................................	23	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................TTTTATACCCGATACTCAAA----ATG-AG...............................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................GTATATTAGATTTGTGGTGAA...................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATTGAGCCAT...............................................................	20	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAATG...............................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GAATCGTTTCCGACCCCATAAAGTA------...........................................................................................................	25	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................ATG-AGTATTGGGGTATATTA................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droWil2

TTGTTA---ATTAAATT----------------------------AAAAAG-------------TATC-----ATCAAGG------------------------------------------------------------------------------------------AAGTAA--GGTAA-----ATT---------------GAATATAAATTT----------GAATTGTTATACCCTT-GC----A-----------AAAAGGGTATATTAATTTTGG--TTA-----GAAGTCTGCAACGCATAGAAAGAAGCATCTCCGACCATATAAAGTA------TATATATTCTTGATCAGCACGACGAGACGAGTTCAAATAGCCATGTCCGTCCGTCT--------G----GATCAACGCAAACTCCTCCTAGAC----CGTTAAAGCT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCACGACGAGACGAGTTC.........................................................................	25	20	0.55	11	0	11	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCACGACGAGACG..............................................................................	22	20	0.10	2	0	2	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCACGACGAGACGA.............................................................................	21	20	0.10	2	0	0	0	0	2
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAAACTCCTCCTAGAC----CG........	21	20	0.10	2	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACTCCTCCTAGAC----CGTTAAAG..	24	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................GCATAGAAAGAAGCATCTCCGACCATA........................................................................................................................	27	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................AGAAAGAAGCATCTCCGACCATAT.......................................................................................................................	24	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................ACGAGTTCAAATAGCCATGTC............................................................	21	20	0.05	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................TAGAAAGAAGCATCTCCGACC...........................................................................................................................	21	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCCGTCT--------G----GATCAAC...............................	27	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCACGACGAGA................................................................................	18	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................TTCAAATAGCCATGTCCGTCCGTC....................................................	24	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................GTCT--------G----GATCAACGCAAACTC.......................	20	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ATCAGCACGACGAGACGAGTT..........................................................................	21	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................TA------TATATATTCTTGATCAGCACGAC....................................................................................	25	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................AATAGCCATGTCCGTCCGTCT--------G----......................................	22	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................ATAGAAAGAAGCATCTCCGAC............................................................................................................................	21	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................CGCATAGAAAGAAGCATCTCCGACCA..........................................................................................................................	26	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................TGCAACGCATAGAAAGAAGCATCTC................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGCACGACGAGAC...............................................................................	27	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................AAAGAAGCATCTCCGACCATA........................................................................................................................	21	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCCGTCT--------G----......................................	20	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................CCGACCATATAAAGTA------TATATATTCTT................................................................................................	27	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CAAATAGCCATGTCCGTCCGTCT--------G----......................................	24	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGCACGACGAG.................................................................................	25	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................CATAGAAAGAAGCATCTCCGACCAT.........................................................................................................................	25	20	0.05	1	0	0	0	1	0

droVir3

AAGACG---GGG-------------------------------------------------------------------------------------------------------------TTTCG---------GGAAGTTCCA--------------------CCCGCAAGTGT--GGAAA-----AAT---------------CGAAAAACGTTTGTATAA----AACTTTTTATACCCTT-GC----A-------------GAGGGTATTATAATTTTGT--CGT-----GAAATGTGTAACGCATAGAAGGAGATATCTCCGACCCCATAAAGTA------TATATATTCTTAACCAGCATCAACAGCCGAGTCGATATAGCCATGTGCGTCTGTCT--------G----TTTCTATGCGAACTAGTCTCTCAG----TTTTAAAGCT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGAT.....................................................................................................................................	25	20	1.60	32	0	0	0	0	3	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	3	2	11	1	2	0	1	3	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGATA....................................................................................................................................	26	20	1.50	30	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	10	2	1	1	0	1	1	0	4	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAG.......................................................................................................................................	23	20	0.85	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGG.........................................................................................................................................	21	20	0.70	14	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGATG....................................................................................................................................	26	20	0.60	12	0	0	0	0	0	0	1	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TAACCAGCATCAACAGCCGAGTCGATA......................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGATT....................................................................................................................................	26	20	0.45	9	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGCGAACTAGTCTCTCAG----TTT.......	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGATATC..................................................................................................................................	28	20	0.35	7	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGATAT...................................................................................................................................	27	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CAGCATCAACAGCCGAGTCGATATAG...................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CCAGCATCAACAGCCGAGTCGATATAGC..................................................................	28	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGATAA...................................................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AATGTGTAACGCATAGAAGG.........................................................................................................................................	20	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................T-----GAAATGTGTAACGCATAGAAGGAGAT.....................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................T-----GAAATGTGTAACGCATAGAAGGAGATA....................................................................................................................................	28	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGATC....................................................................................................................................	26	20	0.10	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AATGTGTAACGCATAGAAGGAGAT.....................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TAGAAGGAGATATCTCCGACCCCA........................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GT-----GAAATGTGTAACGCATAGA............................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGCGAACTAGTCTCTCAG----TT........	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATGCGAACTAGTCTCTCAG----TTTT......	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TAACGCATAGAAGGAGATA....................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GTAACGCATAGAAGGAGA......................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CATCAACAGCCGAGTCGATATAGCCATG..............................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................TGTCT--------G----TTTCTATGCGAACTA.......................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................ACGCATAGAAGGAGATATCTCCGAC............................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GAAATGTGTAACGCATAGAAGGAGATA....................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCT--------G----TTTCTATGCGAAC.........................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TCAACAGCCGAGTCGATATAGCCATG..............................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTATGCGAACTAGTCTCT.................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGCGAACTAGTCTCTCAG----TTTT......	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GGTATTATAATTTTGT--CGT-----GAAATG.........................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCTTGA---ATTATTGA----------------------------GCCA-----AT-------TTCACG----TT------------------------TTTTAT---------------------------------------T--------------------GTTCCAAGTCA--CATAA----------ACC----------ACACGATTACTT----------TTATTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTG---TGA-----AAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTA------TATATATTCTTAATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCC--------G----TCCGTATGAGCAAAAGGATCTCAGAAGTTATAAGAGCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................................................................................................GGGAAATCAGGGTATAATGGTTTTG---T......................................................................................................................................................................	26	20	0.25	5	5	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CTTAATCAGGACGACGAGCT...............................................................................	20	13	0.08	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................ACCCCATAAAGTA------TATATATTCTTAA..............................................................................................	26	17	0.06	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ATGGTTTTG---TGA-----AAAGTATGT......................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................TGTCC--------G----TCCGTATGAGCAAAAGGAT...................	25	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCATCGCAGACCCCATAAAGT..................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droGri2

CGAACG---AA------------------------------------AGAA---A-----------------------------------------------------------AATG---------------------------------CCGAAGGAATTGTATTCCTAG------------------------------------ATAGAAGTGT----------TTCCTTCAGTAAACTT-GC----A-------------GAGCGTTTCATAATTTTGT--CCA-----CCAGTTTGTAATGCGTTGAAGAAATCATCTCTGATCCCATAAAGTATATATGTATATATTATATATCAGCATCACTAGTCGATTTTGTATAGCTATGTCCA---GTCT--------G----TTTCTATGCATTCTAGACTCTAAT----TATTATAACT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_2138

scaffold_13272:368316-368466 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads