ID:

dan_2136

 Coordinate:

scaffold_13272:361850-362000 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.7 -2.2 -2.0

Flybase annnotation

exon [dana_GLEANR_3481:3]; CDS [Dana\GF20608-cds]; intron [Dana\GF20608-in]

Repeatable elements

NameClassFamilyStrand
Hoana1DNAhAT-hobo+
Helitron-2_DVirRCHelitron-
mature
  1. scaffold_6519:4712-4730 +
  2. scaffold_6519:8614-8632 +
  3. scaffold_12387:10886-10904 +
  4. scaffold_12911:929736-929754 +
  5. scaffold_12911:2060001-2060019 +
  6. scaffold_12911:2063213-2063231 +
  7. scaffold_13082:696462-696480 +
  8. scaffold_13082:1828498-1828516 +
  9. scaffold_13082:2101329-2101347 +
  10. scaffold_13099:160350-160368 +
  11. scaffold_13099:2962297-2962315 +
  12. scaffold_13131:49809-49827 +
  13. scaffold_13266:19820965-19820983 +
  14. scaffold_13335:3082018-3082036 +
  15. scaffold_13340:22688914-22688932 +
  16. scaffold_13417:2372535-2372553 +
  17. scaffold_13417:4567208-4567226 +
  18. scaffold_13499:1207776-1207794 +
  19. scaffold_13767:1643541-1643559 +
  20. scaffold_13770:408521-408539 +
  21. scaffold_3817:3541-3559 +
  22. scaffold_7642:1117-1135 +
  23. scaffold_8090:2674-2692 +
  24. scaffold_8719:5528-5546 +
  25. scaffold_12916:131148-131166 +
  26. scaffold_12943:4934957-4934975 +
  27. scaffold_13034:636931-636949 +
  28. scaffold_13082:2146866-2146884 +
  29. scaffold_13089:664810-664828 +
  30. scaffold_13099:1244687-1244705 +
  31. scaffold_13111:325974-325992 +
  32. scaffold_13111:1392179-1392197 +
  33. scaffold_13250:2530076-2530094 +
  34. scaffold_13280:1055717-1055735 +
  35. scaffold_13334:1373073-1373091 +
  36. scaffold_13339:131233-131251 +
  37. scaffold_13339:1426317-1426335 +
  38. scaffold_13340:3846437-3846455 +
  39. scaffold_13340:12207890-12207908 +
  40. scaffold_13417:6031243-6031261 +
  41. scaffold_4450:1733-1751 +
  42. scaffold_6970:3373-3391 +
  43. scaffold_9307:2167-2185 +
  44. scaffold_11469:692-710 +
  45. scaffold_12600:1983-2001 +
  46. scaffold_12916:15972879-15972897 +
  47. scaffold_13034:2169399-2169417 +
  48. scaffold_13082:3908904-3908922 +
  49. scaffold_13089:285426-285444 +
  50. scaffold_13099:2721816-2721834 +
  51. scaffold_13099:3177846-3177864 +
  52. scaffold_13137:636290-636308 +
  53. scaffold_13250:485063-485081 +
  54. scaffold_13250:525730-525748 +
  55. scaffold_13250:2360008-2360026 +
  56. scaffold_13250:2674375-2674393 +
  57. scaffold_13333:648396-648414 +
  58. scaffold_13337:23071148-23071166 +
  59. scaffold_13417:2552023-2552041 +
  60. scaffold_13417:5834897-5834915 +
  61. scaffold_4452:480-498 -
  62. scaffold_12928:585764-585782 -
  63. scaffold_12929:995108-995126 -
  64. scaffold_12947:512748-512766 -
  65. scaffold_13034:462047-462065 -
  66. dan_3566  scaffold_13099:2302880-2302898 -
  67. scaffold_13248:3986139-3986157 -
  68. scaffold_13260:2046631-2046649 -
  69. scaffold_13266:13090048-13090066 -
  70. dan_2136  scaffold_13272:361850-361868 -
  71. scaffold_13333:802143-802161 -
  72. scaffold_13335:1862331-1862349 -
  73. scaffold_13337:19657256-19657274 -
  74. scaffold_13340:13370067-13370085 -
  75. scaffold_13417:1775923-1775941 -
  76. scaffold_13417:3446586-3446604 -
  77. scaffold_13417:6516466-6516484 -
  78. scaffold_13499:398008-398026 -
  79. scaffold_13499:401581-401599 -
  80. scaffold_13767:1260388-1260406 -
star
  1. scaffold_386:155-173 -
  2. scaffold_8636:29-47 -
  3. scaffold_12586:34610-34628 -
  4. scaffold_12586:205550-205568 -
  5. scaffold_12905:461925-461943 -
  6. scaffold_12911:1726779-1726797 -
  7. scaffold_12928:457666-457684 -
  8. scaffold_12947:512777-512795 -
  9. scaffold_13034:462076-462094 -
  10. scaffold_13077:436016-436034 -
  11. scaffold_13260:2046660-2046678 -
  12. scaffold_13272:355330-355348 -
  13. dan_2136  scaffold_13272:361879-361897 -
  14. scaffold_13337:19657285-19657303 -
  15. scaffold_13417:2673166-2673184 -
  16. scaffold_13417:3446615-3446633 -
  17. scaffold_13417:5275922-5275940 -
  18. scaffold_13417:6516495-6516513 -
  19. scaffold_13469:768663-768681 -
  20. scaffold_13767:1260417-1260435 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATATGTCTCATGCTGGAAATTTAAGTGATAGCACAACAAAAGATGCGACAGTATGTACATAAAAATATGAATAACATTCAATAATGTCTATATTTTTAAAGAACATTTTGAGATAATTTTAAATTTGTATTTTTAGTAGATTTTTTATACCCTTGCAGAGGGTATTATAATTTTGGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTC
*********************************************************************************************************************************************************(((.....((((....(((((.....)))))))))...))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V055
head
 M058
embryo
 M044
female body
 V039
embryo
......................................................................................................................................................................................GTGTGCAACGCAGTGAAGG.................................................. 19 0 20 0.65 13 13 0 0 0 0
.............................................TGACAGTATCTACATAAAAA.......................................................................................................................................................................................... 20 2 3 0.33 1 0 1 0 0 0
...........................ATAGCACAAAAAAAGACGAGAC.......................................................................................................................................................................................................... 22 3 6 0.17 1 0 0 1 0 0
........................................................................................................................................................................................GTGCAACGCAGTGAAGGAGACATCTCC........................................ 27 0 20 0.10 2 0 0 0 2 0
....GCCTAATGCTGGAAATGTA.................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
............................................................................................................TGAGATACTTTTAAATTCGTT.......................................................................................................................... 21 3 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................TGCAGAGGGTATTATAATT............................................................................... 19 0 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TATACAGAGTACGACCTTTAAATTCACTATCGTGTTGTTTTCTACGCTGTCATACATGTATTTTTATACTTATTGTAAGTTATTACAGATATAAAAATTTCTTGTAAAACTCTATTAAAATTTAAACATAAAAATCATCTAAAAAATATGGGAACGTCTCCCATAATATTAAAACCAGTTTTCACACGTTGCGTCACTTCCTCTGTAGAGGCTGGGATATTTCATATATATAAGAACTAGTCCTAGTGGAG
**************************************************(((.....((((....(((((.....)))))))))...))).......********************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V106
head
..........................................................................................................................................................CGTCTCCCATAATATTAAAACCAGTTT...................................................................... 27 0 20 1.75 35 35 0 0 0
.......................................................................................................................................................GAACGTCTCCCATAATATTAAAACCAGT........................................................................ 28 0 20 0.10 2 0 2 0 0
.........................................................................................................................................................................................................TCTGTAGAGGCTGGGATATTTC............................ 22 0 20 0.10 2 0 0 0 2
.................................................................................................................................................................................GTTTTCACACGTTGCGTCACTT.................................................... 22 0 20 0.10 2 0 0 2 0
...............................................................................................................................................................................CAGTTTTCACACGTTGCGTCACTTCCTC................................................ 28 0 20 0.10 2 2 0 0 0
.........................................................................................................................................................................TAAAACCAGTTTTCACACGTT............................................................. 21 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................................TTTTCACACGTTGCGTCACTTCCT................................................. 24 0 20 0.05 1 1 0 0 0
..........................................................................................................................................................................................................CTGTAGAGGCTGGGATATT.............................. 19 0 20 0.05 1 0 0 1 0
...............................................................................................................................................................................CAGTTTTCACACGTTGCGTCACTTCCTCT............................................... 29 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13272:361800-362050 - dan_2136 ATATGTCTCATGCT----------------------------GG---------A--------------------------AATTTAAGTGATAGC---------------------------------ACAACAAAAGATGCGA-----CAGTAT-----------GTACATAAAAATATG------AATAA-------------------------------------CA----TTCAA---------------------------------------------TA------------------ATGTCTATATTTTTAAA-------GAAC------------------------AT---------------------TTTGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------TAAT-------------T-------------TTAAATTTGTA----TTTT------T---------------------AGTAG--ATTTTTTATACCCTT-----G----C---AG------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGC--AGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTC
droBip1 scf7180000396518:133008-133248 + ATATAACTCTTATT----------------------------TT---------C--------------------------AATTTTTATGATAAT--------------------------------------------------------------ATTAAAG-----------AATAAG------AATTA------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCAATTTTT-------------------------------------------------------ATAAAAAAATAAATAA-----AAATTATAATTCAATTT-----TTTTAAAAATAT---------TGCAAATAA--GT--------------------------------------------------------------------------------------------------------------GTTA----CG------------------AT----TC--AATTTTTATACCCTT-----G----C---AG------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGC--AGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTC
droKik1 scf7180000302741:8968-9221 - ACTTGTCTTAG---G--------------------------------------CCAGGTTTAAGAGATTCTATGCA---A----------------------------------------------------CAAAAGTTGGGAAGCACC-----------------------------------------------------AATCA----------------------------------------TAAATGG-------------------------------------------------------------------------------------------------------------------------------------------------TATTACAAAAAAGTAGAAAAACGCAAAATTATTATGCAAATT--------TAAAATC---------TTTTTAATTAG--GT-------------------------------------------------------------------------------------GGCA--CGG---------------TGTTA------------------------TT----TT--CGTTTTTATACCCTT-----G----C-----------AGGGTATTATAATTTTAGTCA-------GAAGTTTGCAACGC--AGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAG
droFic1 scf7180000453298:4398-4645 - GTTTGTATAGTACT----------------------------TA---------A--------------------------ACTTTAAGTAAA------------------------------------------------T----------------AGTAAGA-----------AAAAAGAAAAAA---T--------------------AAATTTTAAGCACAA---------GTTCATATTAAAA------T--------------------------------TATATTTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAT-----------------------------------------------------CCCC-----------C-TTTAAATGCTTCACTTATACA---------------------TTTA----TT------------------AA----TT--TGTTTTTATACCCTT-----G----C---AGAGCAAAAGGGTATTATAATTTTGGCCA-------GAAGTTTGCAACGC--AGTCAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGAC
droEle1 scf7180000490089:11222-11458 + TGGAA--ATAG---AAATGGTTAAATAACTTAGAATAACGCTTCT------------------------------------------------------------------------------------------------------------AA-----------CTTTATAAAAATCAG--AAAACGACA------------------------------------------------------------------------------------------------------------TGATAATAG--------------------CAACAA-------------------------------TATTTTA---------------------------------------------------------------AAAATT--------TCAGAAT---------TTTATAA------------------------------------------------------------TTTTTTCTA-------------------------------A-------------------G-----------------------AACA----TA--CATTTTTATACCCTT-----G----C---AG------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGC--AGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAG
droRho1 scf7180000757868:2916-3150 - AGGTGTTTCATTTC----------------------------TA---------A--------------------------AATGTAAGTCAAGGC---------------------------------GCCCTAAAACCTAGAA-----AAG--------------------------------------T--------------------ATTTCTCAAATATAA---------GTCTA--------------------------------------------------------------------------------------------C------------------------TATTTCTAGATTTTAAAAATTTTTTTCTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT-TAGAAA-------------------------------TTTT---------------------------ATTT----TT--AATTTTTATACCCTT-----G----C---AG------AGGGTATTATAATTTTGGTCA-------GAAGTTTGTAACGC--AGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATAG
droBia1 scf7180000302073:177709-177933 + TAGAAAAGT-------------AAGTATATTAAAATAAGGACTGTAATGTATGAACA-------------------GTA---AGGGAGGGATAGTACAATA------------------AACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACTATGTATGTAAT-------GAACAA-------------------------------TA------------------------------------------------------------TTA--------------------------------------TT----------------------------------------------------------------------------------AA-------------------------------ATTA---------------------------ACTT----TT--TTTTATTATACCCTT-----G----C---TG------AGGGTATAATGATTTCAGTCA-------GAACTTTGCAACGC--AGTGAAGAATACGTTTCCGACTCCATAAAGTATATATATTCTTGATCAGCGTCACAAG
droTak1 scf7180000415380:177734-177980 - ACGTATTTTACACT----------------------------GG---------AAAG-------------------GA-------------------------------------------------------------AAAG-------GTGAT------GGG-----------TAAT-------------------------ATAA----------------------------------------TTAATAGGATTTAAATGAAAATAAAATTCAAAATAAATTATTATTTATT-------------------TT------------------------------------------------------------------------------------------------------------------------------------TAA-------------------------------------------------------------------------------AGTT-----------A-TTTAATTATGTCA-------------TTAATTT---------TTTA----CC------------------AATTGGCT--ATTTTTTATACCCTT-----G----C---AG------AGGGTATTATGATTTCAGTCA-------GAAGTTTGCAACGC--AGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTAATCAGCATCACAAG
droEug1 scf7180000408987:212792-213022 + TTTCATGCT---------------------------------CTA--------A---------------------------GAT-------------------------------------------------------------------------TGAAAGA-----------AAACAA--AATAAAACT------------------------------------------------------------------------------------------------------------TTTTAAGAT--------------------TTGTAT-------------------------------AATTTAA---------------------------------------------------------------AAAATGTTAAAAATTAA-----------------AAA------------------------------------------------------------CATTGTCTGGTCAAT------A-------------------------------A---TAAAC----TT------------------TA----AT--GCTTTTTATACCCGTTACTCG----T---AGAGTAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAG--ATAGAAGGAAGCGTTTCCGGCCCTATAAAGTGTATATATTCTTGTTCAGGATCAATAG
dm3 chr2L:22609893-22610121 - ATAGCAAATCA---A--------------------------------------AAA-------------------------------------------------------------------------------------------------------------------------------------GCTTATTAGCTCC-ACACACATGTT------------TGACAAACAGTTGACAACAAAA------A--------------------------------TATTTTGATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-----------------------------------------------------AACC-----------T-TAAAAATTATATAT--TAACA--CGG---------------GATTC----TT------------------AA----AC--AATTTTTATACCCGTTACTCG----T---A--------GAGTAAAA-AGGTTTGTTAA-------AAAGTATGTAACAG--GCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCGTGGTCAGGATTAATAG
droSim2 4:112549-112789 + ATATGTCGCAT---T--------------------------------------TTA------------------------T-TTTAATTTGTTATT--------------------------------TAAACAATATAGTCAA-----ATCTAT-----------T-----------------------------------------------------------------------TACATTATTA------T--------------------------------TATTATGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAATATAATATATATTTTTACATTT-----------------------------------TTATATA--------TAATTA----TTTT-----------------------ACCA----CT--TCTTTTTATACCCGTTACTCT----T---AA---AAAAGGGTATA-TATATTCGTTTA-------AAAGTTTTTAATTCTTGTAGAAGGAAACGTTTTCGACCATAATAAGTATATATATTCTTTATCAGGA---ATAG
droSec2 scaffold_39:132244-132487 - CATGCGAT-------------------------------------------------------------------------ATTCAAATACTTGC---------------------------------TTGATTAAAGT-T-----CTTCAGTAGGTTAATAGG-----------AAGAAG------AATTACTTGTGCCTCCAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAATATTTATATTTCTAAATAGTAGAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC----TT---AAAGAGGC-----AACT----CA--GATTTTTATACCCGTTACTTG----T---AG--------AGTATACTAGATTTGTGAA-------AAAGTATATAACAG--GCAGAAGGAAACGTTTCCGACCATATAAAGTATATATATTCTTGATGATGATCAATAG
droYak3 v2_chrUn_466:1072-1300 - ATATGTTGCTATGT----------------------------TG---------A-------------------------ACATTTAATTTGCTGCATAAAACCATTTATCATGTTGTATATATATGGT--------------------------------------------------------------------------------------------------TAACTTCCATCTGATATCTA--------------------------------------------------------------------------AA-------CTAC------------------------ATTTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATA--------GA-----------------------------------------------ATTAATTATACCCGTTACTCG----T---AGAGTAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAG--GCAGAAGGAAGCGTTTCCGACCATATAATGTATATATATTCTTGATCAGGACCAATAG
droEre2 scaffold_4784:941185-941416 - ATAAGTACAAA------------------------------------------C--------------------------AATGCAAGTGATGGA---------------------------------AAAA--------------------------AACAGA-----------AAGCGA--GAAAAAGCATTTAAGCCCC-------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------TGTGGAAAAT-------AT--------ATTGTGGCAAATAAA-AGC----------------------------------------------------------------------------CATTTCCT-CACATT-TAAAAA-------------------------------GTAT---------------------------ATTT-AAAGGGCTTTTATTGTACCCGCA---------------------------AACTTTATTCGTTGA-------AAAGCATGTAACAG--GCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAG
dp5 4_group4:1725964-1726210 + ATATTTTTGATG-----------------------------------------------------------ATGCA---A--TGAATGCAATGGA---------------------------------GCGACGAGGAAAAA----------------GAAAGAAAGAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------ATATAAGAG--------------------AAAAAA-------------------------------A-----------------------------------------------------------------------ATTT-----ATTAAA-AAC----------------------------------------------------------------------------TATTT-----ACAT--TG--AA-------------------------------GTTT---------------------------ATTT----TT--ATTTATTATACCCGATACTCA----A-AATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGT--CTAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAG
droPer2 scaffold_139:50256-50539 - ATGTATCATTT---G--------------------------------------AAAG-------------------GTA---TTTGAATTATAGCTCAAAA------------------ATGTATGGT--------AAT-T-----CACCACTTGGTTGATGAT-----------AATGAT------AATCA-------------------------------------AT----TTAAG---------------------------------------------TT------------------TT----------------------------ATTTTTGATTTTTTAAATGAAAGT---------------------TTCGGAATAATTGTTATTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--------------------TTTT------T---AAAAAATCAAATCAAAA----TC--AATTTTTATACCCGATAATCA----A---AA------TGTGTATTAG--ATTTGTGGTGAAAATGGATGTGTGTAACGT--CCAGAAGTTAGCGTTTCCGACCCCATAAGGTATATATATTCTTGATCAGCATCAATAG
droWil2 scf2_1100000004909:12279642-12279912 - ATATATTTCTG---T--------------------------------------AGA------------------------T----------------------------------------------------------------------------ATTTAGG-----------ACAAAG------CATTT------------------------------------------------CAACAAAA------A--------------------------------AATGTTAATATATCTATAAGAA--------------------ATC-------------------------------------------------------------------------------------------------TAACACTGAATCT-----TTTCAAAAGACTTCACGATCTTG----TAGAG-----------------------------------------------------CCCC-----------TGTCGAAATTTTGTATTTAGCCA--TGG---------------AATCTGTTATTTTTT--------------AA----ACAAGTTTTTTACACCCTT-----G----C---AA----AAAGGGTATATTAATTTTGGTCA-------GAAGTGTGCAACGC--ATAGAAGGAAGCATCTCCGACCATATAAAGTATATATATTCTTGATCAGCAC---GAC
droVir3 scaffold_10231:1279-1490 - AAATCTGAATGT-----------------------------------------------------------ACTCA---A----------------------------------------------------CAAAAGTAGCGG-----TTAAGT-----------GAAAATAATAAATTG------AA---------------------------------------------------------------------------------------------------ATATATTTT-------------------TT----TATAGTA------AC--------------------C------------T-A---------------------------------------------------------------ACGT------------------------------------------------------------------------------------------------------------GTAAAA---CTTA-------------------------A-----TTA----------------------TATA----TA--TATTTTTATACCCTT-----G----C---AG------AGGGTATTATAATTTTGTCGT-------GAAATGTGCAACGC--ATAGAAGGAGACATCTCCGACCCCATAAAGTATATATATTCTTAATCAGCATCAACAG
droMoj3 scaffold_6308:1466069-1466341 - ATATGTATTAA---A--------------------------------------AAA------------------------T-ATTAAATAATATA-----------------------------------TACAAAATGTTTAA-----ATG-----------------------------------------------------------------------------------------------------------------TATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATAT---------ATCAAACCA--GCTTTGCATAATTTTTAATTTTTTTATTTATTTATGTATATATGTATATATTT-------------------------------------------TTATCTATTTA----TTTTT----CA------------------TA----TC--TATTTTTATACCCTGAACCCATTTTCAATGGGAAATCAGGGTATAATGGTTTTGTTGA-------AATGTATGTAACAA--GGAGAAGGAGGCGTGGCAGACCCCACAAAGTATATATATTCTTGATCAGGGTGACGAG
droGri2 scaffold_15110:7191912-7192135 + ATGTTGGCAAA--------------CATATTTATGGCA---------------------------------ATC-------------------------------------------------------CAATAAATAATGC-------------------------------------------------------------------------------------------------ATAGCATAA------A--------------------------------AATATACATT-------------------TT----TAGAATT------GC--------------------T------------TTA---------------------------------------------------------------AAGTGT----------------------------------------------------------------------------------------------------------GCAGAATATTTTCATTTTGTTG--TTG---------------TTTTC----CT------------------TA----TT--GTTTTTTATACCCTT-----G----T---CG------AAGGTATTCCAATTTTGTCGT-------GCAGTTTGTAATTC--ATTGAAGGAGACATCTCCGA-----TAAAAGTTATATATTCTTTCTCAGCATCATTCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ATATGTCTCATGCT----------------------------GG---------A--------------------------AATTTAAGTGATAGC---------------------------------ACAACAAAAGATGCGA-----CAGTAT-----------GTACATAAAAATATG------AATAA-------------------------------------CA----TTCAA---------------------------------------------TA------------------ATGTCTATATTTTTAAA-------GAAC------------------------AT---------------------TTTGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------TAAT-------------T-------------TTAAATTTGTA----TTTT------T---------------------AGTAG--ATTTTTTATACCCTT-----G----C---AG------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGC--AGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGC--AGTGAAGG..................................................19200.65130000013
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACGC--AGTGAAGGAGACATCTCC........................................27200.102200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----G----C---AG------AGGGTATTATAATT........................................................................................19200.051001000
droBip1
ATATAACTCTTATT----------------------------TT---------C--------------------------AATTTTTATGATAAT--------------------------------------------------------------ATTAAAG-----------AATAAG------AATTA------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCAATTTTT-------------------------------------------------------ATAAAAAAATAAATAA-----AAATTATAATTCAATTT-----TTTTAAAAATAT---------TGCAAATAA--GT--------------------------------------------------------------------------------------------------------------GTTA----CG------------------AT----TC--AATTTTTATACCCTT-----G----C---AG------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGC--AGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCSizeHit CountTotal NormTotal
No Reads
droKik1
ACTTGTCTTAG---G--------------------------------------CCAGGTTTAAGAGATTCTATGCA---A----------------------------------------------------CAAAAGTTGGGAAGCACC-----------------------------------------------------AATCA----------------------------------------TAAATGG-------------------------------------------------------------------------------------------------------------------------------------------------TATTACAAAAAAGTAGAAAAACGCAAAATTATTATGCAAATT--------TAAAATC---------TTTTTAATTAG--GT-------------------------------------------------------------------------------------GGCA--CGG---------------TGTTA------------------------TT----TT--CGTTTTTATACCCTT-----G----C-----------AGGGTATTATAATTTTAGTCA-------GAAGTTTGCAACGC--AGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGSizeHit CountTotal NormTotal
No Reads
droFic1
GTTTGTATAGTACT----------------------------TA---------A--------------------------ACTTTAAGTAAA------------------------------------------------T----------------AGTAAGA-----------AAAAAGAAAAAA---T--------------------AAATTTTAAGCACAA---------GTTCATATTAAAA------T--------------------------------TATATTTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAT-----------------------------------------------------CCCC-----------C-TTTAAATGCTTCACTTATACA---------------------TTTA----TT------------------AA----TT--TGTTTTTATACCCTT-----G----C---AGAGCAAAAGGGTATTATAATTTTGGCCA-------GAAGTTTGCAACGC--AGTCAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGACSizeHit CountTotal NormTotal
No Reads
droEle1
TGGAA--ATAG---AAATGGTTAAATAACTTAGAATAACGCTTCT------------------------------------------------------------------------------------------------------------AA-----------CTTTATAAAAATCAG--AAAACGACA------------------------------------------------------------------------------------------------------------TGATAATAG--------------------CAACAA-------------------------------TATTTTA---------------------------------------------------------------AAAATT--------TCAGAAT---------TTTATAA------------------------------------------------------------TTTTTTCTA-------------------------------A-------------------G-----------------------AACA----TA--CATTTTTATACCCTT-----G----C---AG------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGC--AGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGSizeHit CountTotal NormTotal
No Reads
droRho1
AGGTGTTTCATTTC----------------------------TA---------A--------------------------AATGTAAGTCAAGGC---------------------------------GCCCTAAAACCTAGAA-----AAG--------------------------------------T--------------------ATTTCTCAAATATAA---------GTCTA--------------------------------------------------------------------------------------------C------------------------TATTTCTAGATTTTAAAAATTTTTTTCTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT-TAGAAA-------------------------------TTTT---------------------------ATTT----TT--AATTTTTATACCCTT-----G----C---AG------AGGGTATTATAATTTTGGTCA-------GAAGTTTGTAACGC--AGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATAGSizeHit CountTotal NormTotal
No Reads
droBia1
TAGAAAAGT-------------AAGTATATTAAAATAAGGACTGTAATGTATGAACA-------------------GTA---AGGGAGGGATAGTACAATA------------------AACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACTATGTATGTAAT-------GAACAA-------------------------------TA------------------------------------------------------------TTA--------------------------------------TT----------------------------------------------------------------------------------AA-------------------------------ATTA---------------------------ACTT----TT--TTTTATTATACCCTT-----G----C---TG------AGGGTATAATGATTTCAGTCA-------GAACTTTGCAACGC--AGTGAAGAATACGTTTCCGACTCCATAAAGTATATATATTCTTGATCAGCGTCACAAGSizeHit CountTotal NormTotal
No Reads
droTak1
ACGTATTTTACACT----------------------------GG---------AAAG-------------------GA-------------------------------------------------------------AAAG-------GTGAT------GGG-----------TAAT-------------------------ATAA----------------------------------------TTAATAGGATTTAAATGAAAATAAAATTCAAAATAAATTATTATTTATT-------------------TT------------------------------------------------------------------------------------------------------------------------------------TAA-------------------------------------------------------------------------------AGTT-----------A-TTTAATTATGTCA-------------TTAATTT---------TTTA----CC------------------AATTGGCT--ATTTTTTATACCCTT-----G----C---AG------AGGGTATTATGATTTCAGTCA-------GAAGTTTGCAACGC--AGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTAATCAGCATCACAAGSizeHit CountTotal NormTotal
No Reads
droEug1
TTTCATGCT---------------------------------CTA--------A---------------------------GAT-------------------------------------------------------------------------TGAAAGA-----------AAACAA--AATAAAACT------------------------------------------------------------------------------------------------------------TTTTAAGAT--------------------TTGTAT-------------------------------AATTTAA---------------------------------------------------------------AAAATGTTAAAAATTAA-----------------AAA------------------------------------------------------------CATTGTCTGGTCAAT------A-------------------------------A---TAAAC----TT------------------TA----AT--GCTTTTTATACCCGTTACTCG----T---AGAGTAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAG--ATAGAAGGAAGCGTTTCCGGCCCTATAAAGTGTATATATTCTTGTTCAGGATCAATAGSizeHit CountTotal NormTotal
No Reads
dm3
ATAGCAAATCA---A--------------------------------------AAA-------------------------------------------------------------------------------------------------------------------------------------GCTTATTAGCTCC-ACACACATGTT------------TGACAAACAGTTGACAACAAAA------A--------------------------------TATTTTGATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-----------------------------------------------------AACC-----------T-TAAAAATTATATAT--TAACA--CGG---------------GATTC----TT------------------AA----AC--AATTTTTATACCCGTTACTCG----T---A--------GAGTAAAA-AGGTTTGTTAA-------AAAGTATGTAACAG--GCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCGTGGTCAGGATTAATAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG--GCAGAAGGAAGCGT............................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAG--GCAGAAGGAAGCGTTTCCG.......................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--GCAGAAGGAAGCGT............................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACCATATAAAGTATA........................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--GCAGAAGGAAGCGTTTCCGAC.....................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACCATATAAAGTAT.........................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--GCAGAAGGAAGCGTTTCCGACCA...................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG--GCAGAAGGAAGCGTTTCCGACCATA.................................28200.0510000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCCGTTACTCG----T---A--------GAG..................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--GCAGAAGGAAGCGTTTCC........................................19200.0510000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAG--GCAGAAGGAAGCGTT...........................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGTTACTCG----T---A--------GAGTAAAA-............................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG--GCAGAAGGAAGCGTTT..........................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGCGTTTCCGACCA...................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAG--GCAGAAGGAAGCGTTT..........................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAG--GCAGAAGGAAGCGTTTCCGA......................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATACCCGTTACTCG----T---A--------GA...................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCGTTTCCGACCATATAAAGT...........................28200.0510000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATATGTCGCAT---T--------------------------------------TTA------------------------T-TTTAATTTGTTATT--------------------------------TAAACAATATAGTCAA-----ATCTAT-----------T-----------------------------------------------------------------------TACATTATTA------T--------------------------------TATTATGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAATATAATATATATTTTTACATTT-----------------------------------TTATATA--------TAATTA----TTTT-----------------------ACCA----CT--TCTTTTTATACCCGTTACTCT----T---AA---AAAAGGGTATA-TATATTCGTTTA-------AAAGTTTTTAATTCTTGTAGAAGGAAACGTTTTCGACCATAATAAGTATATATATTCTTTATCAGGA---ATAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTACTCT----T---AA---AAAAGGGTATA-TA...........................................................................................2611.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATTCTTGTAGAAGGA.................................................2011.00100010000000000000
droSec2
CATGCGAT-------------------------------------------------------------------------ATTCAAATACTTGC---------------------------------TTGATTAAAGT-T-----CTTCAGTAGGTTAATAGG-----------AAGAAG------AATTACTTGTGCCTCCAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAATATTTATATTTCTAAATAGTAGAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC----TT---AAAGAGGC-----AACT----CA--GATTTTTATACCCGTTACTTG----T---AG--------AGTATACTAGATTTGTGAA-------AAAGTATATAACAG--GCAGAAGGAAACGTTTCCGACCATATAAAGTATATATATTCTTGATGATGATCAATAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATACCCGTTACTTG----T---..............................................................................................................20190.0510010
droYak3
ATATGTTGCTATGT----------------------------TG---------A-------------------------ACATTTAATTTGCTGCATAAAACCATTTATCATGTTGTATATATATGGT--------------------------------------------------------------------------------------------------TAACTTCCATCTGATATCTA--------------------------------------------------------------------------AA-------CTAC------------------------ATTTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATA--------GA-----------------------------------------------ATTAATTATACCCGTTACTCG----T---AGAGTAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAG--GCAGAAGGAAGCGTTTCCGACCATATAATGTATATATATTCTTGATCAGGACCAATAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAG--GCA.......................................................25200.20400400000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGCGTTTCCGACCATATAATGTA..........................26150.13201100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACCATATAATGTATA........................25190.11200200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACCATATAATGTATATATA....................29130.08100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACCATATAATGTATATATA....................25150.07101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGCGTTTCCGACCATATAATGTA..........................27150.07100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTTTCCGACCATATAATGTATA........................27160.06100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCATATAATGTATATATATTCTT...............28160.06101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTTTCCGACCATATAATGTA..........................25170.06101000000000
......................................................................................................................TATATATGGT--------------------------------------------------------------------------------------------------TAACTTCCATCTGATATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000000000
droEre2
ATAAGTACAAA------------------------------------------C--------------------------AATGCAAGTGATGGA---------------------------------AAAA--------------------------AACAGA-----------AAGCGA--GAAAAAGCATTTAAGCCCC-------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------------------------------------------------TGTGGAAAAT-------AT--------ATTGTGGCAAATAAA-AGC----------------------------------------------------------------------------CATTTCCT-CACATT-TAAAAA-------------------------------GTAT---------------------------ATTT-AAAGGGCTTTTATTGTACCCGCA---------------------------AACTTTATTCGTTGA-------AAAGCATGTAACAG--GCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGCATGTAACAG--GCAGA.....................................................2660.1710000001
dp5
ATATTTTTGATG-----------------------------------------------------------ATGCA---A--TGAATGCAATGGA---------------------------------GCGACGAGGAAAAA----------------GAAAGAAAGAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------ATATAAGAG--------------------AAAAAA-------------------------------A-----------------------------------------------------------------------ATTT-----ATTAAA-AAC----------------------------------------------------------------------------TATTT-----ACAT--TG--AA-------------------------------GTTT---------------------------ATTT----TT--ATTTATTATACCCGATACTCA----A-AATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGT--CTAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTG..................................................................21201.703400004000300
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG......................................................................19201.503000000030000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTC..................................................................23201.352700000027000
......................................................................................TGCAATGGA---------------------------------GCGACGAGGAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATG......................................................................20200.951901000000090
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGATTTGTGGTAAAAG............................................................................19200.751500000000150
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGT--CTAGAAGGA.................................................21170.711201000002000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATATA......................26200.701401400000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAAAAGTGGATGTGTG..................................................................20200.601201200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGT--CTAGAAGGAATCGT............................................27140.5780710000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGT.................................................................20200.551101100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGT--CTAGAAGGAAT...............................................24140.5070600001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAGTGGA........................................................................24200.4590000000090
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGT--CTAGAAGGAATC..............................................25140.4360500000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGT--CTAGAAGG..................................................20190.4280500003000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGG.........................................................................21200.4080000008000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTG....................................................................19200.3570000004030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATGTGTGTAACGT--CT........................................................20130.3140100011010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAGTGGATG......................................................................26200.2550000000050
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCA----A-AATGAGTATTGGGGTA................................................................................................26200.2550500000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT--CTAGAAGGAATCGTTTCCGACC....................................25140.2130300000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGT--CTAGAAGG..................................................21190.2140400000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CTAGAAGGAATCGTTTCCGACCCCAT................................27100.2020000000200
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGT--CTAGAAGGAATCGT............................................21160.1930200001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CTAGAAGGAATCGTTTCCGACCCC..................................25110.1820200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT--CTAGAAGGAATCGTTTCCGACCC...................................26130.1520000000200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATGT.....................................................................21200.1530000000030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGGA........................................................................22200.1530300000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGTAACGT--..........................................................25200.1530300000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGT--CTAGAAGGAATCG.............................................26140.1420200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGT--CTAGAAGGAATCGT............................................26140.1420200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAAGGAATCGTTTCCGAC.....................................21150.1320200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAACGT--CTAGAAGGAAT...............................................21150.1320200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGT--CTAGAAGGAATCGTTTC.........................................21160.1320000002000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGT--CTAGAAGGAA................................................23170.1220200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGT--CTAGAAGGAA................................................21180.1120200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGT--CTAGAAGGA.................................................20180.1120000002000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTATACCCGATACTCA----A-AAC.............................................................................................................24200.1020000000020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATGTGTGTAACG.............................................................29200.1020000000020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATATATA....................28200.1020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATACCCGATACTCA----A-AATGA...........................................................................................................24200.1020000000200
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGT--CTAGAAGG..................................................19200.1020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAAGGAATCGTTTCCGACCCCA.................................25100.1010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGGAATCGTTTCCGACCCCATA...............................26120.0810100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATGTGTGTAACGT--CTA.......................................................21130.0810100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGTGTGTAACGT--CT........................................................19130.0810100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGT--CTAGAAGGAATCG.............................................25140.0710100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGGAATCGTTTCCGACCCC..................................23140.0710100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGT--CTAGAAGGAATCGTT...........................................27140.0710100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGT--CTAGAAGGAATCGTT...........................................28140.0710100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAACGT--CTAGAAGGAATC..............................................22150.0710100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGT--CTAGAAGGAATCGTTTC.........................................23160.0610100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGT--CTAGAAGGAATCGTT...........................................22160.0610100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGT--CTAGAAGGAATCGTT...........................................21160.0610100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT--CTAGAAGGAATCGTTTC.........................................20160.0610000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGT--CTAGAAGGAATCGT............................................22160.0610100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGT--CTAGAAGGAATCG.............................................21160.0610000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--CTAGAAGGAATCGTTTCC........................................20160.0610010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAAGGAATCGTTTCCGA......................................20170.0610100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGT--CTAGAAGGAA................................................22170.0610100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAACGT--CTAGAAGGA.................................................19180.0610100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTATACCCGATACTCA----A-AATG............................................................................................................24200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGTATTGGGGTATATTAGA.........................................................................................23200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTGGATGTGTGTAAC..............................................................21200.0510001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGT--CTAGAAG...................................................20200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTAAAAGTGG.........................................................................18200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATTGGGGTATATTAGATTA......................................................................................24200.0510000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA----A-AATGAGTATTGGGGTAT...............................................................................................21200.0510000000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGT--CTAGAA....................................................19200.0510000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGT--CTAGAAGGAG................................................22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATATATATT..................25200.0510000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATTGGGGTATATTAGATTTGTGG..................................................................................28200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACTCA----A-AATGAGTATTGG....................................................................................................22200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGGAATCGTTTCCGA......................................19200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGT--CTAGAAGGAATA..............................................25200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAATCGTTTCCGACCC...................................21200.0510001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATACTCA----A-AATGAGTATTGGGG..................................................................................................25200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGTGTAACGT--CTAG......................................................19200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGAT.......................................................................19200.0510010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGACCCCATAAAGTATA........................22200.0510001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTG..................................................................23200.0510001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGCA.......19200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGT...................................................................21200.0510010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATATTAGATTTGTGGTAA...............................................................................21200.0510000100000
droPer2
ATGTATCATTT---G--------------------------------------AAAG-------------------GTA---TTTGAATTATAGCTCAAAA------------------ATGTATGGT--------AAT-T-----CACCACTTGGTTGATGAT-----------AATGAT------AATCA-------------------------------------AT----TTAAG---------------------------------------------TT------------------TT----------------------------ATTTTTGATTTTTTAAATGAAAGT---------------------TTCGGAATAATTGTTATTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--------------------TTTT------T---AAAAAATCAAATCAAAA----TC--AATTTTTATACCCGATAATCA----A---AA------TGTGTATTAG--ATTTGTGGTGAAAATGGATGTGTGTAACGT--CCAGAAGTTAGCGTTTCCGACCCCATAAGGTATATATATTCTTGATCAGCATCAATAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTG....................................................................21200.60120000012
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATTAG--ATTTGTGGTGAAAAT...........................................................................2490.222000002
...........................................................................................TAGCTCAAAA------------------ATGTATGGT--------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.201001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG--ATTTGTGGTGAAAATGGATGTGTG..................................................................27200.102000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAATGGATG......................................................................20200.102000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGTGTAACGT--CCAGAAGT..................................................22200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAG--ATTTGTGGTGAAAATGGAT.......................................................................25200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTAG--ATTTGTGGTGAA..............................................................................20200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTAG--ATTTGTGGTGA...............................................................................19200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGT--CCAGAAGT..................................................20200.051000001
droWil2
ATATATTTCTG---T--------------------------------------AGA------------------------T----------------------------------------------------------------------------ATTTAGG-----------ACAAAG------CATTT------------------------------------------------CAACAAAA------A--------------------------------AATGTTAATATATCTATAAGAA--------------------ATC-------------------------------------------------------------------------------------------------TAACACTGAATCT-----TTTCAAAAGACTTCACGATCTTG----TAGAG-----------------------------------------------------CCCC-----------TGTCGAAATTTTGTATTTAGCCA--TGG---------------AATCTGTTATTTTTT--------------AA----ACAAGTTTTTTACACCCTT-----G----C---AA----AAAGGGTATATTAATTTTGGTCA-------GAAGTGTGCAACGC--ATAGAAGGAAGCATCTCCGACCATATAAAGTATATATATTCTTGATCAGCAC---GACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATAAAGTATATATATTCT................21200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATATTAATTTTGGTCA-------GAAGT.....................................................................27200.05101000
droVir3
AAATCTGAATGT-----------------------------------------------------------ACTCA---A----------------------------------------------------CAAAAGTAGCGG-----TTAAGT-----------GAAAATAATAAATTG------AA---------------------------------------------------------------------------------------------------ATATATTTT-------------------TT----TATAGTA------AC--------------------C------------T-A---------------------------------------------------------------ACGT------------------------------------------------------------------------------------------------------------GTAAAA---CTTA-------------------------A-----TTA----------------------TATA----TA--TATTTTTATACCCTT-----G----C---AG------AGGGTATTATAATTTTGTCGT-------GAAATGTGCAACGC--ATAGAAGGAGACATCTCCGACCCCATAAAGTATATATATTCTTAATCAGCATCAACAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........T-----------------------------------------------------------ACTCA---A----------------------------------------------------CAAAAGTAGCGG-----TTAAGT-----------GA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.501001000000000000000000000000000000000000000000000000000000000000
.....TGAATGT-----------------------------------------------------------ACTCA---A----------------------------------------------------CAAAAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.459009000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCAACGC--ATAGAAGGAGACAT............................................2730.331000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCAACGC--ATAGAAGGAG................................................2340.251000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACGC--ATAGAAGGAGACA.............................................2150.201000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCAACGC--ATAGAAGGA.................................................2260.171000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCAACGC--ATAGAAG...................................................20130.152000000000000000000000000000000000001100000000000000000000000000
...TCTGAATGT-----------------------------------------------------------ACTCA---A----------------------------------------------------CAAAAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.153000000000000000000000000003000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGC--ATAGAAGGAGACATCTCCGACC....................................27200.102000000000000000000000000000020000000000000000000000000000000000
......................................................................................................................................................TAAGT-----------GAAAATAATAAATTG------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTAATCAGCATCAACAG20200.051000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TAGTA------AC--------------------C------------T-A---------------------------------------------------------------ACGT------------------------------------------------------------------------------------------------------------GTAAAA---CT.................................................................................................................................................................................................................22200.051000010000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCA....20200.051000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTATAATTTTGTCGT-------GAAATG....................................................................25200.051000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................GT-----------GAAAATAATAAATTG------AA---------------------------------------------------------------------------------------------------ATATAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
......GAATGT-----------------------------------------------------------ACTCA---A----------------------------------------------------CAAAAGTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TAGTA------AC--------------------C------------T-A---------------------------------------------------------------ACGT------------------------------------------------------------------------------------------------------------GTAAAA---...................................................................................................................................................................................................................20200.051000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TAGTA------AC--------------------C------------T-A---------------------------------------------------------------ACGT------------------------------------------------------------------------------------------------------------GTAAAA---CTT................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TT----TATAGTA------AC--------------------C------------T-A---------------------------------------------------------------ACGT------------------------------------------------------------------------------------------------------------GTA.........................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATTCTTAATCAGCATCAACA.27200.051000000000000000000000000000100000000000000000000000000000000000
droMoj3
ATATGTATTAA---A--------------------------------------AAA------------------------T-ATTAAATAATATA-----------------------------------TACAAAATGTTTAA-----ATG-----------------------------------------------------------------------------------------------------------------TATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATAT---------ATCAAACCA--GCTTTGCATAATTTTTAATTTTTTTATTTATTTATGTATATATGTATATATTT-------------------------------------------TTATCTATTTA----TTTTT----CA------------------TA----TC--TATTTTTATACCCTGAACCCATTTTCAATGGGAAATCAGGGTATAATGGTTTTGTTGA-------AATGTATGTAACAA--GGAGAAGGAGGCGTGGCAGACCCCACAAAGTATATATATTCTTGATCAGGGTGACGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTTTTGTTGA-------AATGTATG..................................................................22200.357700000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA-------AATGTATGTAACAA--GGAGAA....................................................24140.071000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGACCCCACAAAGTATAT.......................22200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCACAAAGTATATATATTCTTG..............24200.051100000
droGri2
ATGTTGGCAAA--------------CATATTTATGGCA---------------------------------ATC-------------------------------------------------------CAATAAATAATGC-------------------------------------------------------------------------------------------------ATAGCATAA------A--------------------------------AATATACATT-------------------TT----TAGAATT------GC--------------------T------------TTA---------------------------------------------------------------AAGTGT----------------------------------------------------------------------------------------------------------GCAGAATATTTTCATTTTGTTG--TTG---------------TTTTC----CT------------------TA----TT--GTTTTTTATACCCTT-----G----T---CG------AAGGTATTCCAATTTTGTCGT-------GCAGTTTGTAATTC--ATTGAAGGAGACATCTCCGA-----TAAAAGTTATATATTCTTTCTCAGCATCATTCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/18/2015 at 03:53 AM