ID:

dan_2111

 Coordinate:

scaffold_13266:19144772-19144922 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.0 -14.8 -14.8

Flybase annnotation

exon [dana_GLEANR_13843:6]; CDS [Dana\GF13836-cds]; intron [Dana\GF13836-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo+
mature
  1. scaffold_737:181-203 +
  2. scaffold_9569:2984-3006 +
  3. scaffold_9569:7645-7667 +
  4. scaffold_12671:44358-44380 +
  5. scaffold_13034:1955420-1955442 +
  6. scaffold_13070:36092-36114 +
  7. scaffold_13082:75353-75375 +
  8. scaffold_13099:1922054-1922076 +
  9. scaffold_13111:907244-907266 +
  10. scaffold_13248:4446274-4446296 +
  11. scaffold_13250:1008924-1008946 +
  12. dan_2111  scaffold_13266:19144846-19144868 +
  13. scaffold_13280:928957-928979 +
  14. scaffold_13339:108952-108974 +
  15. scaffold_13339:3207361-3207383 +
  16. scaffold_13340:1385563-1385585 +
  17. scaffold_13340:23234209-23234231 +
  18. scaffold_13470:6726-6748 +
  19. scaffold_13499:516526-516548 +
  20. scaffold_13767:182144-182166 +
  21. scaffold_5270:1027-1049 +
  22. scaffold_5281:3510-3532 +
  23. scaffold_8671:773-795 +
  24. scaffold_12422:9037-9059 +
  25. scaffold_12735:3034-3056 +
  26. scaffold_12831:750-772 +
  27. scaffold_12905:201065-201087 +
  28. scaffold_12943:4935547-4935569 +
  29. scaffold_12947:642211-642233 +
  30. scaffold_13034:965246-965268 +
  31. scaffold_13082:1623193-1623215 +
  32. scaffold_13082:2194062-2194084 +
  33. scaffold_13099:2139941-2139963 +
  34. scaffold_13266:11233693-11233715 +
  35. scaffold_13333:648268-648290 +
  36. scaffold_13417:2785811-2785833 +
  37. scaffold_13417:3997065-3997087 +
  38. scaffold_13767:883224-883246 +
  39. scaffold_13767:1162867-1162889 +
  40. scaffold_13770:517951-517973 +
star
  1. scaffold_737:133-156 +
  2. scaffold_9544:260-283 +
  3. scaffold_12671:44310-44333 +
  4. scaffold_12916:14912631-14912654 +
  5. scaffold_13034:1955372-1955395 +
  6. scaffold_13082:75305-75328 +
  7. scaffold_13084:43342-43365 +
  8. scaffold_13099:1922006-1922029 +
  9. scaffold_13111:907196-907219 +
  10. scaffold_13250:1008876-1008899 +
  11. dan_2111  scaffold_13266:19144798-19144821 +
  12. scaffold_13274:273912-273935 +
  13. scaffold_13280:928909-928932 +
  14. scaffold_13339:3207313-3207336 +
  15. scaffold_13340:1385515-1385538 +
  16. scaffold_13340:1399821-1399844 +
  17. scaffold_13340:1405215-1405238 +
  18. scaffold_13417:6031785-6031808 +
  19. scaffold_13499:516478-516501 +
  20. scaffold_13767:182096-182119 +
  21. scaffold_5281:3462-3485 +
  22. scaffold_9071:9550-9573 +
  23. scaffold_11141:3207-3230 +
  24. scaffold_12422:8989-9012 +
  25. scaffold_13082:2194014-2194037 +
  26. scaffold_13099:2139893-2139916 +
  27. scaffold_13117:5252273-5252296 +
  28. scaffold_13248:4017503-4017526 +
  29. scaffold_13250:1971994-1972017 +
  30. scaffold_13250:2410071-2410094 +
  31. scaffold_13260:2062629-2062652 +
  32. scaffold_13266:18824024-18824047 +
  33. scaffold_13276:20791-20814 +
  34. scaffold_13276:51300-51323 +
  35. scaffold_13337:12004422-12004445 +
  36. scaffold_13337:15854066-15854089 +
  37. scaffold_13340:1311871-1311894 +
  38. scaffold_13417:2665736-2665759 +
  39. scaffold_13417:3452056-3452079 +
  40. scaffold_13417:6715488-6715511 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTGGACAAAATAATCTGATTTGTCAAATTTCATAAGGATCGGCCGACTATATACGATCTTCTATAAATGTAATAATATAAGATGCGTGGCGCCACCTAGCGGACTGCGACTGAACTGCAAGGGTATATCAACTTCGGCTCCGCCCGAAGTTAGCTTTCCTTTCTTGTTTAAGATTGTAATTGTCTATAATTGTTTCATAGGACACCTTGCTTGTCAGTTAAACCGCATCTTGCCAACGAAGAGAAGAATT
****************************************************************************..........((((.(((((((.((((............))))..))))...........))).))))...******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body		 V055
head
 V106
head
...............................................................................................................................................................................................................TTGCTTGTCAGTTAAACCGC........................ 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................CTCGCCAACGAAGAGAAGAATT 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................ACCTTGCTTGTCAGTTAAAC........................... 20 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................CGCATCTTGCCAACGAAG......... 18 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................................................CGCTTTGCTTGTCAGTTAAACCGC........................ 24 2 1 1.00 1 1 0 0 0 0 0
............................................................................................................................TATATCAACTTCGGCTCCGCCCG........................................................................................................ 23 0 20 0.55 11 0 11 0 0 0 0
............................................................................TATAAGATGCGTGGCGCCACCTAG....................................................................................................................................................... 24 0 20 0.45 9 0 9 0 0 0 0
...................................................................................................................CTGCAAGGGTATATCAACTTCGGCT............................................................................................................... 25 0 20 0.30 6 6 0 0 0 0 0
..............................................................................TAAGATGCGTGGCGCCACC.......................................................................................................................................................... 19 0 20 0.20 4 0 4 0 0 0 0
.......................TCAAATTTCATAAGGATCGGC............................................................................................................................................................................................................... 21 0 20 0.15 3 0 0 0 2 1 0
...................................................................................TGCGTGGCGCCACCTAGCGGACTGCGAC............................................................................................................................................ 28 0 20 0.10 2 0 2 0 0 0 0
..........................................................................................................GCGACTGAACTGCAAGGGTATATC......................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0 0
.....................................................................................................................GCAAGGGTATATCAACTTCGGCTCC............................................................................................................. 25 0 20 0.10 2 0 2 0 0 0 0
.........................................................................................GCGCCACCTAGCGGACTGC............................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
...................................AGGATCGGCCGACTATATACG................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................TAATAATTTTATAGGACACC............................................ 20 3 20 0.05 1 1 0 0 0 0 0
.........................................................................................................TGCGACTGAACTGCAAGGGTATA........................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
......................................................................TAATAATATAAGATGCGTGGC................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 1 0
...............................................................................................................................ATCAACTTCGGCTCCGCCCG........................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................CTGAACTGCAAGGGTATATCAACTTCGG................................................................................................................. 28 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................GACTGCGACTGCACTGCAAGGGTAT............................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0 0
..........................AATTTCATAAGGATCGGCCGAC........................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1
..........................................................................................CGCCACCTAGCGGACTGCGACTG.......................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
..............................................................................TAAGATGCGTGGCGCCACCT......................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................ACTGCGACTGAACTGCAAGGGTATATC......................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
..........................................GCCGACTATATACGATCTTCTATAAATG..................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0 0
.......................................TCGGCCGACTATATACGATCTTCTATA......................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
...............................................................ATAAATGTAATAATATAACATGCGT................................................................................................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0
................................................................TAAATGTAATAATATAAGATGCGTGGCGC.............................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................CCTAGCGGACTGCGACTGAACT...................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................AACTGTTTCACAGAACACC............................................ 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AAACCTGTTTTATTAGACTAAACAGTTTAAAGTATTCCTAGCCGGCTGATATATGCTAGAAGATATTTACATTATTATATTCTACGCACCGCGGTGGATCGCCTGACGCTGACTTGACGTTCCCATATAGTTGAAGCCGAGGCGGGCTTCAATCGAAAGGAAAGAACAAATTCTAACATTAACAGATATTAACAAAGTATCCTGTGGAACGAACAGTCAATTTGGCGTAGAACGGTTGCTTCTCTTCTTAA
********************************************************************************************************..........((((.(((((((.((((............))))..))))...........))).))))...**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
 M058
embryo
 V039
embryo
 V105
male body
..........................................................................................GCGGTGGATCGCCTGACGCTGACT......................................................................................................................................... 24 0 20 0.65 13 13 0 0 0 0
......................................................................................................................................................................................................ATCCTGTGGAACGGACAA................................... 18 2 2 0.50 1 0 1 0 0 0
.......................................................................................ACCGCGGTGGATCGCCTGACGCTGACTT........................................................................................................................................ 28 0 20 0.50 10 10 0 0 0 0
..........................................................................................................CGCTGACTTGACGTTCCCATATAGT........................................................................................................................ 25 0 20 0.15 3 0 0 3 0 0
................................................................................................................................................................................................CAAAGAATCCTGTGGGACC........................................ 19 3 16 0.06 1 0 0 0 1 0
.............................................................................................GTGGATCGCCTGACGCTGACTTGAC..................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0
..................................................ATATGCTAGAAGATATTTACA.................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
................ACTAAACAGTTTAAAGTAGTCCTAGCC................................................................................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0
...............................................GATATATGCTAGAAGATATTT....................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1
.............................................................................................................TGACTTGACGTTCCCATATAGT........................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................................CGATACGGCGTAGAACGGT............... 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:19144722-19144972 + dan_2111 TTTGGACAAAATA--------------------------------------------------ATCTGAT---------TTGTCAAATTTCATAAGGATCGGCCGACTATATACGAT---------------------------------------------------------------------------------------------------------C-TTCTATA---------AATGTAATAATATAAGATGCGTG--GC--------------GCC------------------------------------ACCT--------AGCGGACTGCGA-----------------CTGAACTGCAAGGGTATAT----CAACTTCGGCTCCGCCCGAA-GTTAGC-TTTCCTTTCTTGTTT-AA-GA-----TTGTA-A--TTGTCT-------AT--------------A---------------------------------------ATTGTTTCATAGGACACCTTGCTTGTC-A---------------GTTAAA--CC--------GCATCTTGCCAACG--AAGAGAAGAATT
droBip1 scf7180000396014:8244-8458 - ATTGTAATAAAT------------------------------------------------TGGATTATAT---------ATTCATATTCCCATAAGGAGCGGCCAACTATATCCGATGTTTGCGATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------TATCCGG------------TTTTAACTGCAAGGGTATAT----ACACTTCGGCTCCGCCCGAA-GTTAGC-TTTCCTTTCTTGTTT-TT-TTT-------TA-AA--TATCGATTTTC-AT--------------GTC----------------------------------------------------AACTTAAATGAA-A---------------GGTA----CACAGT--TTT--CCATAC-AACACAAAAAAAAGAATG
droKik1 scf7180000302352:3433-3689 + TTTCAGCATTTTA--------------------------------------------------TTTATGC---------TATGTA-------TAATTATACATCATTTATATATTTT---------------------------------------------------------------------------------------------------------C-TTTTATTTATTTTTCT-----AATTATTTAACCAGAATGTCTC--------------GAT------------------------------------TGTT--------AATGATCTAGTT-----------------GCAATCTGCAAGGGTATAT----AAACTTCGGAGTG--CCTAA-GTTAGC-TT-CCTTTCTTGTTT-AA-TTT-------TA-AATT--TTA-------AT--------------ATAAATTTTA----------------------------------TTTAACAAATTAAGTTAATT---------------TTTAATCAAAAATCTGAGT--TTT--GACTACTAATG--TTGATAAAAATT
droFic1 scf7180000453859:21719-21998 + TAATGA-----------------------------------------------GTCT---TGAGT-----TA-CCAATT-----AAATTTCATCAAAATCGGACGACTATATCATATAGCTGTCATATGAACA----------ATATGGAAAATTAATAGAAAAATCGTTATAGCTCCGATGCTCTTTAGCTTTTATGTATTT---------------------------------TGTT----------------------------------------------------------CGTCATAT------------------------------------TT-----------------AGTAACTGCAAGGGTATAT----AAGCTTCGGCTTG--CCGAA-GCTAGC-TT-CCTTTCTTGTTT-TT-TAC-------------TCGTTT-------CAATTCAATTCAGCGTACCTTCGCGAATTGGCGCGAAAATGGC------------------------------------------------------------------------------TGCCGCGAACG--CGGGGGGAAATT
droEle1 scf7180000490688:77763-77999 + AGGAACTATCAAATA------------------------------------------------A----------------------------------TTGAACTGCA-------------------------------------------------------AATCATCATATCTTCAATGTTTTTAAACATATACGCAATTAAATCATAATTTTAATG-TTTTC---------------------------------------AA--------------GAA------------------------------------TTTT--------TAATTT--TTGC-----------------AAAAACTGCAAGGGTGTAT----GAACTTCGGCTTG--CCGAA-GTTTGC-TT-CCATTCTTGTTT-TAAA-GA---TTTTT-A-TT--TTT-------AT--------------ACCCTTGCAG----------------------------------------AGGGTATTATAA-T----------------------------TTCAGT--CAGAA-GTTTGCAACG--CAGTGAA--GGA
droRho1 scf7180000768182:490-754 + ATTTGGCCAATAA--------------------------------------------------ATCCGAC---------CTACTAAATTTCATAAGGATCGGCTGACTATATCCTATAGCCGCCATATATCATATGAATATATAT--------------------------------------------------------------------ATGAATAATT-TT---------------------------------------GG--------------AAA------------------------------------ATAT--------AATTTA--CAGA-----------------GTATTCTGCAAGGGTATAT----CAACTTCGGCTCCGCCCGAA-GACAGC-TTTTCTTTCTTGTTA-GG-TGT-------TT-GTTT--TCT-------AG--------------GTCCGTATTA----------------------------------------GGGACAA-----------AGAAGCACACTCTTCTTTTGAAATCCAAAT--CCA---AATCCCAAAG--AACAAAAAAAAT
droBia1 scf7180000301603:19021-19309 - CTTGGAAATAAAATTTTTTAATTA-----------------------------GTTC---TGAAT-----TT-CGAATT-----AAATTTTATCAAAATCGGACGACT-TATAATATAGCTGTTATAGAAAAA----------AT-CGGGAAATTAGTGGGAAAATAA-------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAAAAAAGTATTTTC--TAAA----GTTGATTATTTCTTATAACTGCAAGGGTATAC----AAACTTTGGCTTG--CCGAA-GTTAAT-TT-CCTTTCTTGTTA-AA-AGT-------A------------------------------------------------AAACTAAAATAACTGGCGAAAGTTTTTTGATTG---AAAAAATATT---TTTA-A---------------------------GTAACAGCA-TCTTTAAACG--AAAACAA--GGA
droTak1 scf7180000413162:1653-1867 + TTTAGGACATGA-----------------------------------------CTCT---TAA-------TA-ATAAAT-----AAATAATA---------------------------------------------------------------------------------------------TTAAAAAAATACGA-----------AA-TTTAAAA-TT-TT---------------------------------------GC--------------GAT------------------------------------TTGT--------AAGTTAATAGGA-----------------ACGATCTGCAAGGGTATAT----AAGCGTCGGCTGG--CCGAA-GCTAGC-TT-TCTTTCTTGTTT-TTAT-C-C--TTT----TTTTGTC---------T--------------T---------------------------------------TTTGTTT---AGGAAATATTAATAATCAA---------------------------ATAAAAAC-ACCTCTTAACG--AGGTAAAAAACT
droEug1 scf7180000409111:41118-41216 + TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGGGTATAT----AAACTTTGGCTTG--CCGAA-GTTAGC-TT-CTTTAATTATTT-TGTTG-----T--TAAAA--TATT--ATTACTAG----------------------------------------C------------------------------------------------------------------------------TA----TCATC--TGAAGGGCACCT
dm3 chr3L:18848963-18849194 - TTTCAACAATATGTC------------------------------------------------AT-----TT-CGGTTT-----TTAATTCATCAA-ATTGTACGACTATATCACCTAACTACTAAATGAACT--------------------------------------------------------------------------------------------GTAATA---------GATGTA-----------------CTATTTAATTAATTTTTTTGACATTATGTAATATTCGTTAATA--TTGGAATTTAATGTA-------------------TA-----------------AATAACTGCAAGGGTACGTATGAAAGCTTCGGCATG--CCAA--ATTATC-TT-ACTTCC-TGTTT-ATAT------TTTTT-A-TTT-TTT-------AT--------------ATA-----------------------------------------TTT-------------------------------------------------------------------------------AATA
droSim2 2r:2615158-2615183 - GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGCTCACG--AGGAGAAAAACC
droSec2 scaffold_6:1018592-1018652 - TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGCAAGGGTATAT----AAACTTCGGCTTG--CCCAA-GCTAAC-TT-CCTCCC-TGTTA-AG-A------TTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3L:21795842-21795922 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAAGGGTATAT----AAGCTTCGGCATG--CCAAG-TCTGGC-TT-CTTTCCTTTTTT-TTTT-A-AATTTG----TTA--TG---------T--------------A---------------------------------------ATTA--------------------------------------------------------------------------------TCACAT
droEre2 scaffold_4820:153903-153954 - A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAAGGGTATAT----TAGCTTCGGCTTG--CCAAA-ACTAGC-CT-TCTTTCTTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:17973179-17973221 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTCGGAC-C--CCGAA-ACTAGC-ATTCCTTTCTTTTTT-AT-AA-----TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_164:83962-84027 - ATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCGCAAGGGTATCA----GAGGCCGGGT-----CCGAA-GCTGGT-TTTCCTTTTTTTATTATG-A------TTTTA-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000001712:1235-1425 + TTTAGATAAAACGTT--------------------------------------------------TTT---------------------------------------------------------------------------------------------------------------------------------CCATTT---------------------------------TGAT----------------------------------------------------------GGCTATAGGTAAGAAAAAAGATACC-------------------AA-----------------AAAAGTTGCAAGGGTATAC----AAACTTTGACGCG-GTTGAA-GTTAGC-CCGGCCCTCTGGTTT-TA-TTT-------TA-TTTA--TGT-------AG--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGCATTTTCCTCATTTAAA--CT--------TGTACTGGCCGACA--ATCGAAATAGGT
droVir3 scaffold_10230:1265-1455 + GAAAAA----ACATT--------------------------------------------TTGT-------TTTTCAAGAT-----ATCTTGACCAAACTCGG------------------------------------------------------------------------------------------------------------CA-TTTACTA-TT-TTCCATTTACT-TGTT-----A--GATAGAGGCAAAGCACTAT--------------GAGCATTA---------------------------------------------TGAAAA-GGT-----------------CGGGTCTGCAAGGGTATTA----GATCTTTGGCGTG--CCGAA-GATAGC-CCTTCTTTCTCGTTT-TA-CTTAAATTTA----TTT--TA---------T--------------ATT----------------------------------------A--------------------------------------------------------------------------------CAATTT
droMoj3 scaffold_6259:7964-8050 + TTTTAGCCATATG--------------------------------------------------ATTACGC---------TCCCAAAATTTCATTAGGATCGTATGTCTACAAAAGAA-ATT------------------------------ATTCAAC------------------------------------------------------------------------A---------AATAAATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAATAT
droGri2 scaffold_14906:3390738-3390912 - TTTAGATAAAACGTC--ATTAGCATCAATCAAATCTTATATAGTTAGAAAAAAAAA-TTTTTT-------TTTTAAAGTT-----GT--------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAAATA----------------------------------------------------------AAGATGCGACCA--------G---------GTAGGC------------TTTGCTTTGCAAGGGTATGT----AATCTTCAGCGTG--TCTAAGATTAAGTTGTTCTTTCTTGTTA-TA-G------TTTTC-A-GCT--G---------------------------------------------------------------------------------------------------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTTGGACAAAATA--------------------------------------------------ATCTGAT---------TTGTCAAATTTCATAAGGATCGGCCGACTATATACGAT---------------------------------------------------------------------------------------------------------C-TTCTATA---------AATGTAATAATATAAGATGCGTG--GC--------------GCC------------------------------------ACCT--------AGCGGACTGCGA-----------------CTGAACTGCAAGGGTATAT----CAACTTCGGCTCCGCCCGAA-GTTAGC-TTTCCTTTCTTGTTT-AA-GA-----TTGTA-A--TTGTCT-------AT--------------A---------------------------------------ATTGTTTCATAGGACACCTTGCTTGTC-A---------------GTTAAA--CC--------GCATCTTGCCAACG--AAGAGAAGAATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTGTC-A---------------GTTAAA--CC--------GC..........................2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGCTTGTC-A---------------GTTAAA--C.....................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------GCATCTTGCCAACG--AAG.........1811.001001000
.......................................................................................................................................................................................................................................................................................................................................................................................TATAT----CAACTTCGGCTCCGCCCG............................................................................................................................................................................................................23200.55111100000
..........................................................................................................................................................................................................................................................TATAAGATGCGTG--GC--------------GCC------------------------------------ACCT--------AG................................................................................................................................................................................................................................................................................24200.459900000
..............................................................................................................................................................................................................................................................................................................................................................................CTGCAAGGGTATAT----CAACTTCGGCT...................................................................................................................................................................................................................25200.306060000
............................................................................................................................................................................................................................................................TAAGATGCGTG--GC--------------GCC------------------------------------ACC...........................................................................................................................................................................................................................................................................................19200.204400000
..................................................................................TCAAATTTCATAAGGATCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000120
.................................................................................................................................................................................................................................................................TGCGTG--GC--------------GCC------------------------------------ACCT--------AGCGGACTGCGA-----------------C....................................................................................................................................................................................................................................................28200.102200000
....................................................................................................................................................................................................................................................................................................................................................GCGA-----------------CTGAACTGCAAGGGTATAT----C.............................................................................................................................................................................................................................24200.102200000
................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTATAT----CAACTTCGGCTCC.................................................................................................................................................................................................................25200.102200000
.........................................................................................................................................................................................................................................................................GC--------------GCC------------------------------------ACCT--------AGCGGACTGC........................................................................................................................................................................................................................................................................19200.051010000
..............................................................................................AGGATCGGCCGACTATATACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
...................................................................................................................................................................................................................................................................................................................................................TGCGA-----------------CTGAACTGCAAGGGTATA...................................................................................................................................................................................................................................23200.051010000
....................................................................................................................................................................................................................................................TAATAATATAAGATGCGTG--GC--------------.....................................................................................................................................................................................................................................................................................................................................21200.051000100
..........................................................................................................................................................................................................................................................................................................................................................................................AT----CAACTTCGGCTCCGCCCG............................................................................................................................................................................................................20200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................CTGAACTGCAAGGGTATAT----CAACTTCGG.....................................................................................................................................................................................................................28200.051100000
.....................................................................................AATTTCATAAGGATCGGCCGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
..........................................................................................................................................................................................................................................................................C--------------GCC------------------------------------ACCT--------AGCGGACTGCGA-----------------CTG..................................................................................................................................................................................................................................................23200.051100000
............................................................................................................................................................................................................................................................TAAGATGCGTG--GC--------------GCC------------------------------------ACCT--------..................................................................................................................................................................................................................................................................................20200.051010000
.................................................................................................................................................................................................................................................................................................................................................ACTGCGA-----------------CTGAACTGCAAGGGTATAT----C.............................................................................................................................................................................................................................27200.051100000
.....................................................................................................GCCGACTATATACGAT---------------------------------------------------------------------------------------------------------C-TTCTATA---------AATG..........................................................................................................................................................................................................................................................................................................................................................................28200.051100000
..................................................................................................TCGGCCGACTATATACGAT---------------------------------------------------------------------------------------------------------C-TTCTATA---------..............................................................................................................................................................................................................................................................................................................................................................................27200.051010000
.....................................................................................................................................................................................................................................TA---------AATGTAATAATATAAGATGCGTG--GC--------------GC...................................................................................................................................................................................................................................................................................................................................29200.051010000
.................................................................................................................................................................................................................................................................................................................................CCT--------AGCGGACTGCGA-----------------CTGAACT..............................................................................................................................................................................................................................................22200.051010000
droBip1
ATTGTAATAAAT------------------------------------------------TGGATTATAT---------ATTCATATTCCCATAAGGAGCGGCCAACTATATCCGATGTTTGCGATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------TATCCGG------------TTTTAACTGCAAGGGTATAT----ACACTTCGGCTCCGCCCGAA-GTTAGC-TTTCCTTTCTTGTTT-TT-TTT-------TA-AA--TATCGATTTTC-AT--------------GTC----------------------------------------------------AACTTAAATGAA-A---------------GGTA----CACAGT--TTT--CCATAC-AACACAAAAAAAAGAATGSizeHit CountTotal NormTotal
No Reads
droKik1
TTTCAGCATTTTA--------------------------------------------------TTTATGC---------TATGTA-------TAATTATACATCATTTATATATTTT---------------------------------------------------------------------------------------------------------C-TTTTATTTATTTTTCT-----AATTATTTAACCAGAATGTCTC--------------GAT------------------------------------TGTT--------AATGATCTAGTT-----------------GCAATCTGCAAGGGTATAT----AAACTTCGGAGTG--CCTAA-GTTAGC-TT-CCTTTCTTGTTT-AA-TTT-------TA-AATT--TTA-------AT--------------ATAAATTTTA----------------------------------TTTAACAAATTAAGTTAATT---------------TTTAATCAAAAATCTGAGT--TTT--GACTACTAATG--TTGATAAAAATTSizeHit CountTotal NormTotal
No Reads
droFic1
TAATGA-----------------------------------------------GTCT---TGAGT-----TA-CCAATT-----AAATTTCATCAAAATCGGACGACTATATCATATAGCTGTCATATGAACA----------ATATGGAAAATTAATAGAAAAATCGTTATAGCTCCGATGCTCTTTAGCTTTTATGTATTT---------------------------------TGTT----------------------------------------------------------CGTCATAT------------------------------------TT-----------------AGTAACTGCAAGGGTATAT----AAGCTTCGGCTTG--CCGAA-GCTAGC-TT-CCTTTCTTGTTT-TT-TAC-------------TCGTTT-------CAATTCAATTCAGCGTACCTTCGCGAATTGGCGCGAAAATGGC------------------------------------------------------------------------------TGCCGCGAACG--CGGGGGGAAATTSizeHit CountTotal NormTotal
No Reads
droEle1
AGGAACTATCAAATA------------------------------------------------A----------------------------------TTGAACTGCA-------------------------------------------------------AATCATCATATCTTCAATGTTTTTAAACATATACGCAATTAAATCATAATTTTAATG-TTTTC---------------------------------------AA--------------GAA------------------------------------TTTT--------TAATTT--TTGC-----------------AAAAACTGCAAGGGTGTAT----GAACTTCGGCTTG--CCGAA-GTTTGC-TT-CCATTCTTGTTT-TAAA-GA---TTTTT-A-TT--TTT-------AT--------------ACCCTTGCAG----------------------------------------AGGGTATTATAA-T----------------------------TTCAGT--CAGAA-GTTTGCAACG--CAGTGAA--GGASizeHit CountTotal NormTotal
No Reads
droRho1
ATTTGGCCAATAA--------------------------------------------------ATCCGAC---------CTACTAAATTTCATAAGGATCGGCTGACTATATCCTATAGCCGCCATATATCATATGAATATATAT--------------------------------------------------------------------ATGAATAATT-TT---------------------------------------GG--------------AAA------------------------------------ATAT--------AATTTA--CAGA-----------------GTATTCTGCAAGGGTATAT----CAACTTCGGCTCCGCCCGAA-GACAGC-TTTTCTTTCTTGTTA-GG-TGT-------TT-GTTT--TCT-------AG--------------GTCCGTATTA----------------------------------------GGGACAA-----------AGAAGCACACTCTTCTTTTGAAATCCAAAT--CCA---AATCCCAAAG--AACAAAAAAAATSizeHit CountTotal NormTotal
No Reads
droBia1
CTTGGAAATAAAATTTTTTAATTA-----------------------------GTTC---TGAAT-----TT-CGAATT-----AAATTTTATCAAAATCGGACGACT-TATAATATAGCTGTTATAGAAAAA----------AT-CGGGAAATTAGTGGGAAAATAA-------------------------------------------------------------------------------------------------------------------------------------------------------TATGAAAAAAAGTATTTTC--TAAA----GTTGATTATTTCTTATAACTGCAAGGGTATAC----AAACTTTGGCTTG--CCGAA-GTTAAT-TT-CCTTTCTTGTTA-AA-AGT-------A------------------------------------------------AAACTAAAATAACTGGCGAAAGTTTTTTGATTG---AAAAAATATT---TTTA-A---------------------------GTAACAGCA-TCTTTAAACG--AAAACAA--GGASizeHit CountTotal NormTotal
No Reads
droTak1
TTTAGGACATGA-----------------------------------------CTCT---TAA-------TA-ATAAAT-----AAATAATA---------------------------------------------------------------------------------------------TTAAAAAAATACGA-----------AA-TTTAAAA-TT-TT---------------------------------------GC--------------GAT------------------------------------TTGT--------AAGTTAATAGGA-----------------ACGATCTGCAAGGGTATAT----AAGCGTCGGCTGG--CCGAA-GCTAGC-TT-TCTTTCTTGTTT-TTAT-C-C--TTT----TTTTGTC---------T--------------T---------------------------------------TTTGTTT---AGGAAATATTAATAATCAA---------------------------ATAAAAAC-ACCTCTTAACG--AGGTAAAAAACTSizeHit CountTotal NormTotal
No Reads
droEug1
TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAGGGGTATAT----AAACTTTGGCTTG--CCGAA-GTTAGC-TT-CTTTAATTATTT-TGTTG-----T--TAAAA--TATT--ATTACTAG----------------------------------------C------------------------------------------------------------------------------TA----TCATC--TGAAGGGCACCTSizeHit CountTotal NormTotal
No Reads
dm3
TTTCAACAATATGTC------------------------------------------------AT-----TT-CGGTTT-----TTAATTCATCAA-ATTGTACGACTATATCACCTAACTACTAAATGAACT--------------------------------------------------------------------------------------------GTAATA---------GATGTA-----------------CTATTTAATTAATTTTTTTGACATTATGTAATATTCGTTAATA--TTGGAATTTAATGTA-------------------TA-----------------AATAACTGCAAGGGTACGTATGAAAGCTTCGGCATG--CCAA--ATTATC-TT-ACTTCC-TGTTT-ATAT------TTTTT-A-TTT-TTT-------AT--------------ATA-----------------------------------------TTT-------------------------------------------------------------------------------AATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
TTTCAACAATATGTC------------------------------------------------AT-----TG-T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droSim2
GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGCTCACG--AGGAGAAAAACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGCAAGGGTATAT----AAACTTCGGCTTG--CCCAA-GCTAAC-TT-CCTCCC-TGTTA-AG-A------TTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAAGGGTATAT----AAGCTTCGGCATG--CCAAG-TCTGGC-TT-CTTTCCTTTTTT-TTTT-A-AATTTG----TTA--TG---------T--------------A---------------------------------------ATTA--------------------------------------------------------------------------------TCACATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAAGGGTATAT----TAGCTTCGGCTTG--CCAAA-ACTAGC-CT-TCTTTCTTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTCGGAC-C--CCGAA-ACTAGC-ATTCCTTTCTTTTTT-AT-AA-----TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCGCAAGGGTATCA----GAGGCCGGGT-----CCGAA-GCTGGT-TTTCCTTTTTTTATTATG-A------TTTTA-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTTAGATAAAACGTT--------------------------------------------------TTT---------------------------------------------------------------------------------------------------------------------------------CCATTT---------------------------------TGAT----------------------------------------------------------GGCTATAGGTAAGAAAAAAGATACC-------------------AA-----------------AAAAGTTGCAAGGGTATAC----AAACTTTGACGCG-GTTGAA-GTTAGC-CCGGCCCTCTGGTTT-TA-TTT-------TA-TTTA--TGT-------AG--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGCATTTTCCTCATTTAAA--CT--------TGTACTGGCCGACA--ATCGAAATAGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-------AG--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGCATTT....................................................26150.13200020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------AG--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGCATTTTC..................................................26140.07101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGCATTTTC..................................................24140.07101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------AG--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGCA.......................................................21150.07101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------AG--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGCATT.....................................................24150.07101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------AG--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGCAT......................................................23150.07101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA--TGT-------AG--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGC........................................................25150.07101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--TGT-------AG--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGCATT.....................................................27150.07100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-------AG--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGCATT.....................................................25150.07100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------AG--------------GTC-ACAA-----------------------------------------TAGAACG---------------AGCATTTT...................................................26150.07100010
........................................................................................................................................................................................................................................................................................................................................................................................ATAC----AAACTTTGACGCG-GTT.............................................................................................................................................................................................................20200.05100100
......................................................................................................................................................................................................................................................................................................................................................................................GTATAC----AAACTTTGACGCG-GTTGAA-GT.......................................................................................................................................................................................................27200.05100010
.........................................................................................................................................................................................................................................................................................................................................................................................TAC----AAACTTTGACGCG-GTTGAA-GT.......................................................................................................................................................................................................24200.05100010
...............................................................................................................................................................................................................................................................................................................................TACC-------------------AA-----------------AAAAGTTGCAAGGGTATAC----..............................................................................................................................................................................................................................25200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................ATAC----AAACTTTGACGCG-GTTGAA-GT.......................................................................................................................................................................................................25200.05100010
droVir3
GAAAAA----ACATT--------------------------------------------TTGT-------TTTTCAAGAT-----ATCTTGACCAAACTCGG------------------------------------------------------------------------------------------------------------CA-TTTACTA-TT-TTCCATTTACT-TGTT-----A--GATAGAGGCAAAGCACTAT--------------GAGCATTA---------------------------------------------TGAAAA-GGT-----------------CGGGTCTGCAAGGGTATTA----GATCTTTGGCGTG--CCGAA-GATAGC-CCTTCTTTCTCGTTT-TA-CTTAAATTTA----TTT--TA---------T--------------ATT----------------------------------------A--------------------------------------------------------------------------------CAATTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................AGCACTAT--------------GAGCATTA---------------------------------------------TGAAAA-GGT-----------------C....................................................................................................................................................................................................................................................2640.502000000000000000000000000000000010000000000000000000000000000010
..................................................................................................................................................................................................................................................................AAGCACTAT--------------GAGCATTA---------------------------------------------TGAAAA-GGT-----------------C....................................................................................................................................................................................................................................................2740.251000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATTA----GATCTTTGGCGTG--CCG............................................................................................................................................................................................................21200.255000005000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTA----GATCTTTGG.....................................................................................................................................................................................................................22200.204000000000000000000000000000400000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATTA----GATCTTTGGCGTG--C..............................................................................................................................................................................................................19200.204000000400000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TA---------------------------------------------TGAAAA-GGT-----------------CGGGTCTGCAAG.........................................................................................................................................................................................................................................2360.171000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTA----GATCTTTG......................................................................................................................................................................................................................21200.153001000000000000000000000000000000000000200000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TA----GATCTTTGGCGTG--CCGAA-GATAGC-..................................................................................................................................................................................................26200.153000000000000000000000000030000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTA----GATCTTTGGCG...................................................................................................................................................................................................................24200.153000000000000000000000000000300000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATTA----GATCTTTGGCGTG--CC.............................................................................................................................................................................................................20200.153000000000000000000003000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TA----GATCTTTGGCGTG--CCGAA-GA.......................................................................................................................................................................................................22200.102000000000000000000000000000000002000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATTA----GATCTTTGGCGTG--CCGAA-GAT......................................................................................................................................................................................................26200.102000000000000000000000000002000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATTA----GATCTTTGGCGTG--CCGAA-GA.......................................................................................................................................................................................................25200.102000000000000000000000000000020000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGCGTG--CCGAA-GATAGC-CCT...............................................................................................................................................................................................25200.102000000000000000000000000000200000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTA----GATCTTTGGCGT..................................................................................................................................................................................................................25200.102000000000000000000000000000000000200000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................G--CCGAA-GATAGC-CCTTCTTTCTCGT.....................................................................................................................................................................................25200.102000010000000000000000000010000000000000000000000000000000000000
.............................................................................................CAAACTCGG------------------------------------------------------------------------------------------------------------CA-TTTACTA-TT-TTCC..........................................................................................................................................................................................................................................................................................................................................................................................24200.102000000000000000000000000000000020000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTATTA----GATCTTTGGCGTG--CC.............................................................................................................................................................................................................21200.102000000000000000000000000000000000000000000000020000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TCTGCAAGGGTATTA----GATCTTTGGC....................................................................................................................................................................................................................25200.102000000000000000000000000000001100000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GGGTATTA----GATCTTTGGCGTG--C..............................................................................................................................................................................................................22200.102000000000000000000000000020000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TG--CCGAA-GATAGC-CCTTCTTTCTCGT.....................................................................................................................................................................................26200.102000000000000000000000001000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GTG--CCGAA-GATAGC-CCTTCTTTCTCG......................................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................TTCAAGAT-----ATCTTGACCAAACTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGCGTG--CCGAA-GATAGC-C.................................................................................................................................................................................................23200.051000000000000000000000000000000100000000000000000000000000000000
..............................................................................................AAACTCGG------------------------------------------------------------------------------------------------------------CA-TTTACTA-TT-TTCC..........................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTA----GATCTTTGGC....................................................................................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TCTGCAAGGGTATTA----GATCTT........................................................................................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GGTATTA----GATCTTTGGCGTG--CCGAA-GA.......................................................................................................................................................................................................27200.051000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GCGTG--CCGAA-GATAGC-CCTTC.............................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................TCTTGACCAAACTCGG------------------------------------------------------------------------------------------------------------CA-TTTACTA-TT-..............................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCGTG--CCGAA-GATAGC-..................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................T-----A--GATAGAGGCAAAGCACTAT--------------GAGCAT...............................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000100000000000000000000000000000000
........................................................................................................................................................................................................................................................GATAGAGGCAAAGCACTAT--------------GAGC.................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................TT-----A--GATAGAGGCAAAGCACTAT--------------GAGCA................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AAGCACTAT--------------GAGCATTA---------------------------------------------TGAAAA-GG.......................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
......................................................................................TCTTGACCAAACTCGG------------------------------------------------------------------------------------------------------------CA-TTTACT...................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TTA----GATCTTTGGCGTG--CCGAA-GATA.....................................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCGTG--CCGAA-GATAGC-CCTTCT............................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTA----GATCTTTGGCGTG--...............................................................................................................................................................................................................26200.051000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................................................................................................................................................GAGGCAAAGCACTAT--------------GAGCATTA---------------------------------------------TG..............................................................................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CAAAGCACTAT--------------GAGCATTA---------------------------------------------TGAAAA-GG.......................................................................................................................................................................................................................................................................27200.051000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................T-----A--GATAGAGGCAAAGCACTAT--------------GA...................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CAAAGCACTAT--------------GAGCATTA---------------------------------------------TG..............................................................................................................................................................................................................................................................................21200.051000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TT-----A--GATAGAGGCAAAGCACTAT--------------GAGC.................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTATTA----GATCTTTGGCGTG--C..............................................................................................................................................................................................................20200.051000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TTA----GATCTTTGGCGTG--CCG............................................................................................................................................................................................................19200.051000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TGCAAGGGTATTA----GATCT.........................................................................................................................................................................................................................18200.051000000000000000000000000000000000100000000000000000000000000000
droMoj3
TTTTAGCCATATG--------------------------------------------------ATTACGC---------TCCCAAAATTTCATTAGGATCGTATGTCTACAAAAGAA-ATT------------------------------ATTCAAC------------------------------------------------------------------------A---------AATAAATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAATATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................TACAAAAGAA-ATT------------------------------ATTCAAC------------------------------------------------------------------------A---------AATAAA........................................................................................................................................................................................................................................................................................................................................................................27200.70141400000
...........................................................................................................TACAAAAGAA-ATT------------------------------ATTCAAC------------------------------------------------------------------------A---------AATA..........................................................................................................................................................................................................................................................................................................................................................................25200.50100000100
.......................................................................................TTTCATTAGGATCGTATGTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
TTTAGATAAAACGTC--ATTAGCATCAATCAAATCTTATATAGTTAGAAAAAAAAA-TTTTTT-------TTTTAAAGTT-----GT--------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAAATA----------------------------------------------------------AAGATGCGACCA--------G---------GTAGGC------------TTTGCTTTGCAAGGGTATGT----AATCTTCAGCGTG--TCTAAGATTAAGTTGTTCTTTCTTGTTA-TA-G------TTTTC-A-GCT--G---------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:48 AM