ID:

dan_2102

 Coordinate:

scaffold_13266:18468475-18468625 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.0 -17.7 -17.7 -17.7

Flybase annnotation

CDS [Dana\GF11060-cds]; exon [dana_GLEANR_11134:2]; intron [Dana\GF11060-in]

Repeatable elements

NameClassFamilyStrand
(TATAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATTTTAACGTTGAGGAACTTTGAACAACTTGTAAAGTTTTTTAATATAGTGCAATGTTTGTTTATATAGTAAGTATAGTTAGTTATTAGTTAGTACATAGTTATTTATTATATTACTATATTATATTAGTACATTATATTAGTATATTATATTAGTTTATTCTATTTATATTTATTTTCTAAATTCTTTTTTCCATAAAGTCGGTTAACGGTGCGCAGCCGCCATATGGTGCGCCGCCGCCACCTTATGG
**************************************************.......((.(((((...(((((((((((.(((.....(((((((..(((((...(((.((((.(((((........)))))...)))).)))...))))))))))))....))).)))))))))))...)))))..............))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 M044
female body
 V105
male body		 V055
head
 V106
head
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGC.................................... 26 0 1 44.00 44 19 20 5 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCGC.................................. 28 0 1 30.00 30 8 6 14 2 0 0
..............................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTGC.................................... 25 0 1 12.00 12 6 4 2 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCG................................... 27 0 1 11.00 11 2 1 8 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTG..................................... 25 0 1 10.00 10 2 5 3 0 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGC.................................... 22 0 1 10.00 10 5 3 0 2 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGG....................................... 23 0 1 9.00 9 1 2 2 4 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCGC.................................. 24 0 1 8.00 8 2 4 0 2 0 0
..............................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTGCGC.................................. 27 0 1 7.00 7 2 5 0 0 0 0
............................................................................................................................................................................................................................CGCCATATGGTGCGCCGCCGCCACC...... 25 0 1 6.00 6 6 0 0 0 0 0
..........................................................................................................................................................................................................................GCCGCCATATGGTGCGCCGCCGCCAC....... 26 0 1 5.00 5 4 0 1 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGT...................................... 24 0 1 4.00 4 1 0 2 1 0 0
....TTAACGTTGAGGAACTTTGAACAA............................................................................................................................................................................................................................... 24 0 1 4.00 4 0 0 4 0 0 0
.............................................................................................................................................................................................TGTTCCATAAAGTCGGTTAACGGTGC.................................... 26 1 1 4.00 4 4 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTTC.................................... 26 1 1 4.00 4 0 4 0 0 0 0
............................................................................................................................................................................................................................CTCCATATGGTGCGCCGCCGCCAC....... 24 1 1 3.00 3 3 0 0 0 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCGCAGC............................... 27 0 1 3.00 3 2 0 1 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGC...................................... 24 1 1 3.00 3 3 0 0 0 0 0
....TTAACGTTGAGGAACTTTGAACAAC.............................................................................................................................................................................................................................. 25 0 1 3.00 3 1 0 2 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACCGTGC.................................... 26 1 1 3.00 3 0 3 0 0 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCGCAG................................ 26 0 1 3.00 3 0 0 2 1 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGG.................................... 26 1 1 3.00 3 0 3 0 0 0 0
............................................................................................................................................................................................................................CGCCATATGGTGCGCCGCCGCC......... 22 0 1 3.00 3 3 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGT.................................... 26 1 1 3.00 3 0 2 0 1 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCG................................... 23 0 1 3.00 3 0 0 2 1 0 0
..................................................................................................................................................................................................CATAAAGTCGGTTAACGGTGC.................................... 21 0 1 3.00 3 1 2 0 0 0 0
....................................................................................................................................................................................................TAAAGTCGGTTAACGGTGCGC.................................. 21 0 1 3.00 3 1 2 0 0 0 0
....TTAACGTTGAGGAACTTTGAACA................................................................................................................................................................................................................................ 23 0 1 2.00 2 0 0 2 0 0 0
...............................................................................................................................................................................................................................CATATGGTGCGCCGCCGCCACCTTA... 25 0 1 2.00 2 2 0 0 0 0 0
..................................................................................................................................................................................................CATAAAGTCGGTTAACGGTGCGCA................................. 24 0 1 2.00 2 1 0 1 0 0 0
....TTAACGTTGAGGAACTTTGAACAACTTG........................................................................................................................................................................................................................... 28 0 1 2.00 2 0 0 2 0 0 0
.............................................................................................................................................................................................................................GCCATATGGTGCGCCGCCGCCACC...... 24 0 1 2.00 2 1 0 1 0 0 0
................................................................................................................................................................................................TCCATAAAGTCGGTTAACGGTGCGC.................................. 25 0 1 2.00 2 1 0 0 1 0 0
...............................................................................................................................................................................................TTCCATAAAGTCGGTTAACGGTGC.................................... 24 0 1 2.00 2 1 1 0 0 0 0
..............................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTGCG................................... 26 0 1 2.00 2 1 0 1 0 0 0
..............................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTGCGCA................................. 28 0 1 2.00 2 0 0 2 0 0 0
....TTAACGTTGAGGAACTTTG.................................................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0
....TTAACGTTGAGGAACTTTGAACAACC............................................................................................................................................................................................................................. 26 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTT..................................... 25 1 1 2.00 2 0 1 1 0 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCGCA................................. 25 0 1 2.00 2 1 0 0 1 0 0
...........................................................................................................................................................................................................................CCGCCATATGGTGCGCCGCCGCCACC...... 26 0 1 2.00 2 1 0 1 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCGCA................................. 29 0 1 2.00 2 0 0 2 0 0 0
................................................................................................................................................................................................TCCATAAAGTCGGTTAACGGTGC.................................... 23 0 1 2.00 2 1 0 1 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGGGC.................................... 26 1 1 2.00 2 1 1 0 0 0 0
............................................................................................................................................................................................................................CGCCATATGGTGCGCCGCCGCCACCTTA... 28 0 1 2.00 2 1 0 1 0 0 0
....................................................................................................................................................................................................TAAAGTCGGTTAACGGTGCGCAGC............................... 24 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCGG.................................. 28 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................................AAAGTCGGTTAACGGTGCGCAGC............................... 23 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GCCGCCATATGGTGCGCCGCCGCC......... 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACCGTTC.................................... 26 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACCGTGCGC.................................. 28 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................CAGCCGCCATATGGTGCGCCGCCGC.......... 25 0 1 1.00 1 1 0 0 0 0 0
.................................................................TATAGTAAGTATAGTTAGTTA..................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................GCCATATGGTGCGCCGCCGCCACCTTA... 27 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................................................AAGTCGGTTAACGGTGCGCAGCC.............................. 23 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................GTCGCCATATGGTGCGCCGCCGCCACC...... 27 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTTGCCATAAAGTCGGTTAACGGTGC.................................... 26 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TGTTCCATAAAGTCGGTTAACGGTG..................................... 25 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................GGCATATGGTGCGCCGCCGCCACCC..... 25 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTG..................................... 24 0 1 1.00 1 0 1 0 0 0 0
.....................................................................GTAAGTATAGTTAGTTATTAGT................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0
..................................................................................................................................................................................................CATAAAGTCGGTTAACGGT...................................... 19 0 1 1.00 1 0 0 1 0 0 0
.......ACGTTGAGGAACTTTGAACAACTTG........................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................................................................................................................CAGCCGCCATATGGTGCGCCGCC............ 23 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................TAAAGTCGGTTAACGGTGCGCAGCCG............................. 26 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................................CGCCATATGGTGCGCCGCCGCAACC...... 25 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGGCGGTTAAGGGTGC.................................... 26 2 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................CGCCATATGGTGCGCCGCCGAC......... 22 1 1 1.00 1 1 0 0 0 0 0
.....TAACGTTGAGGAACTTTGAACAACT............................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................TGTCCATAAAGTCGGTTAACGGTGC.................................... 25 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCAC.................................. 24 1 1 1.00 1 0 1 0 0 0 0
...................................................................TAGTAAGTATAGTTAGTTATTAGT................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATGAAGTCGGTTAACGGTGCG................................... 27 1 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTGCGTT................................. 28 2 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................................................................TCCATAAAGTCGGTTAACGGTGCGCA................................. 26 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGT...................................... 23 0 1 1.00 1 0 0 0 1 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACGGCTCGC.................................. 24 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCGT.................................. 24 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TGTTCCATAAAGTCGGTTAACGGTGCGC.................................. 28 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TGTTCCATAAAGTCGGTTAACGG....................................... 23 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................TAAAGTCGGTTAGCGGTGCGCAGCC.............................. 25 1 1 1.00 1 1 0 0 0 0 0
........CGTTGAGGAACTTTGAACAACTTG........................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................................CGCCATATGGTGCGCCGCCGCCACT...... 25 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................TTTTTCCATAAAGTCGGTTAACGG....................................... 24 0 1 1.00 1 0 1 0 0 0 0
.......ACGTTGAGGAACTTTGAACAACTT............................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0
...TTTAACGTTGAGGAACTTTGAACAAC.............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACCGTTCC................................... 27 3 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................TAAAGTCGGTTAACGGTGCGCAG................................ 23 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACG........................................ 22 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACAGTGCG................................... 27 1 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................................CGCCATATGGTGCGCCGCCGCCAC....... 24 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................AAAGTCGGTTAACGGTGCGCA................................. 21 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................CGATAAAGTCGGTTAACGGTGCGC.................................. 24 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACTTTTC.................................... 26 3 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGTTGC.................................... 25 1 1 1.00 1 0 0 0 1 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACTGTGC.................................... 26 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................CCATAAAGGCGGTTAACGGTGCG................................... 23 1 1 1.00 1 0 0 1 0 0 0
.......CCGTTGAGGAACTTTGAACAACTT............................................................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GCCGCCATATGGTGCGCCGCCGCCA........ 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................GCCATATGGTGCGCCGCCGCCAC....... 23 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................CTATAAAGTCGGTTAACGGTGC.................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GCCGCCATATGGTGCGCCGCCGC.......... 23 0 1 1.00 1 0 0 1 0 0 0
....TTAACGTTTAGGAACTTTGAACAAC.............................................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................................................................CATAAAGTCGGTTAACGG....................................... 18 0 1 1.00 1 0 0 1 0 0 0
....................................................................................................................................................................................................TAAAGTCGGTTAACGGTGCGCAGCCGC............................ 27 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................GCCGCCATATGGTGCGCCGCCGCCACC...... 27 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................TTTCCATTTAGTCGGTTGACGGTG..................................... 24 3 1 1.00 1 0 1 0 0 0 0
...TTTAACGTTGAGGAACTTTGAACAACTTG........................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................................................................................TTCCATAAAGTCGGTTAACGGTGCGC.................................. 26 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGAA................................... 27 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAAAGGCG..................................... 25 2 1 1.00 1 0 1 0 0 0 0
............GAGGAACTTTGAACAACTTGTAAAGC..................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................CCATAAAGTCAGTTAACGGTGCGC.................................. 24 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGCGCGC.................................. 28 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGGGC.................................. 24 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACCGTGC.................................... 22 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACCGTGCGC.................................. 24 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGTTAC.................................... 25 2 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGTTTCTC.................................. 28 3 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCC................................... 27 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................CGTTAAGTCGGTTAACGGTGCGCA................................. 24 2 1 1.00 1 1 0 0 0 0 0
.................ACTTTGAACAACTTGTAAAGT..................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCGT.................................. 28 1 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................................................................TCCATAAAGTCGGTTAACGGTGCGCAG................................ 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................TATATAGTAAGTATAGTTAGTTATTAGT................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0
.................................................................................................................................................................................................CCATAAAGTCGGTTAACGGCGCGC.................................. 24 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................................................................................................TCCATAAAGTCGGTTAACGGTGCGCAGC............................... 28 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGG....................................... 22 0 1 1.00 1 0 0 1 0 0 0
..............GGAACTTTGAACAACTTGTAAAGT..................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................AAGTTTTTTAATATAGTGCAATGC................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GCAGCCATATGGTGCGCCGCCGCC......... 24 1 1 1.00 1 1 0 0 0 0 0
...........TGAGGAACTTTGAACAACTTGTAAAGT..................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
....TTAACGTTGAGGAACTTTGAACAACT............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................................................................CATAAAGTCGGTTAACGGTGCGCAGCT.............................. 27 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTTACCATAAAGTCGGTTAACGGTGC.................................... 26 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................TTTTTCCATAAAGTCGGTTAACGGTGC.................................... 27 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................TTTCCATACAGTCGGTTAACGGTGCG................................... 26 1 1 1.00 1 0 0 1 0 0 0
.....................................................AATGTTTGTTTATATAGTAAGTATAGT........................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0
..............................................................................................................................................................................................TTTCCATAGAGTCGGTTAACGGTGCG................................... 26 1 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................................................................................................................TATGGTGCGCCGCCGCCACCTTATGG 26 0 2 1.00 2 2 0 0 0 0 0
..............................................................................................................................................................................................TGTCCATAAAGTCGGGTAACGGTGC.................................... 25 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................TACGGTGCGCCGCCGCCACCTTATGG 26 1 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................TGTGGTGCGCCGCCGCCACCTTATGG 26 1 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................CCATATAGTGCGCCGCCGCCACC...... 23 1 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................TTGTGCGCCGCCGCCACCTT.... 20 1 4 0.25 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTTTCCATAAAGTCGCTTAACGGTGC.................................... 26 1 5 0.20 1 1 0 0 0 0 0
........................................................................................................................................................................................................GACGGTTAACGGTGCGAA................................. 18 2 6 0.17 1 0 0 0 0 1 0
............................................................................................................................................................................................................GTTAGAGGTGCGCAGCC.............................. 17 2 10 0.10 1 0 0 0 0 1 0
....................................................................................................................................................................................................................TGCGCAGCCTCCATACGGG.................... 19 3 11 0.09 1 0 0 0 0 1 0
.............................TTGGAAAGTTTTGTAATAT........................................................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................ACTCCGCCGGCACCTTATG. 19 3 20 0.05 1 0 0 0 0 0 1
....................................................................................................................................................................................................................TACGCAGCCCCCATATGG..................... 18 2 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................................................................................TTTTCCATAAATTCGATTAACC........................................ 22 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

ATAAAATTGCAACTCCTTGAAACTTGTTGAACATTTCAAAAAATTATATCACGTTACAAACAAATATATCATTCATATCAATCAATAATCAATCATGTATCAATAAATAATATAATGATATAATATAATCATGTAATATAATCATATAATATAATCAAATAAGATAAATATAAATAAAAGATTTAAGAAAAAAGGTATTTCAGCCAATTGCCACGCGTCGGCGGTATACCACGCGGCGGCGGTGGAATACC
**************************************************.......((.(((((...(((((((((((.(((.....(((((((..(((((...(((.((((.(((((........)))))...)))).)))...))))))))))))....))).)))))))))))...)))))..............))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V039
embryo
.................................................CACGTTACAAACAAATATATCATTCATA.............................................................................................................................................................................. 28 0 1 31.00 31 31 0 0 0
..............................................................................................................................................................................TAAAAGATTTAAGAAAAAAGGTATT.................................................... 25 0 1 8.00 8 4 1 2 1
.................................................CACGTTACAAACAAATATATCATTCAT............................................................................................................................................................................... 27 0 1 4.00 4 4 0 0 0
............................................TATATCACGTTACAAACAAATATATCAT................................................................................................................................................................................... 28 0 1 3.00 3 2 1 0 0
...........................................................................................................................................................................................................................GGCGGTATACCACGCGGCGGCGGT........ 24 0 1 3.00 3 0 3 0 0
.................................................CACGTTACAAACAAATATATCATTCAGA.............................................................................................................................................................................. 28 1 1 3.00 3 3 0 0 0
...................................................................ATCATTCATATCAATCAATAATCAAT.............................................................................................................................................................. 26 0 1 3.00 3 3 0 0 0
..................................................................................................................................................................................AGATTTAAGAAAAAAGGTATTTCAG................................................ 25 0 1 2.00 2 1 1 0 0
........................................................................TCATATCAATCAATAATCAATCATGTAT....................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0
.............................................................................................................................................................................................................................CGGTATACCACGCGGCGGCGGTGGAAT... 27 0 1 2.00 2 2 0 0 0
..............................................................................................................................................................................TAAAAGATTTAAGAAAAAAGGTATTT................................................... 26 0 1 2.00 2 1 0 1 0
................................................TCACGTTACAAACAAATATATCATTCATA.............................................................................................................................................................................. 29 0 1 2.00 2 2 0 0 0
..............................................................................CAATCAATAATCAATCATGTATCAAT................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0
.................TGAAACTTGTTGAACATTTCAAAAAAT............................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0
.....................................................................................TAATCAATCATGTATCAATAAATAAT............................................................................................................................................ 26 0 1 2.00 2 2 0 0 0
....................................................GTTACAAACAAATATATCATTCATA.............................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................TGGCGGTATACCACGCGGCGGC........... 22 1 1 1.00 1 0 1 0 0
........................................................................TCCTATCAATCCATAATCAATAAT........................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0
...........................................TTATATCACGTTACAAACAAATATACCAT................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0
...............................................ATCACGTTACAAACAAATATATCATT.................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................ATTTAAGAAAAAAGGTATTTCAGCCA............................................. 26 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................AAAAAAAGGTATTTCAGCCAATTGCCAC..................................... 28 1 1 1.00 1 0 1 0 0
............CTCCTTGAAACTTGTTGAACATGT....................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0
........................................................................CCATATCAATCAATAATCAATCATGTAT....................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0
...........................................................................TATCAATCAATAATCAATCA............................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
..............CCTTGAAACTTGTTGAACATTT....................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................CAATTGCCACGCGTCGGCGGTATATC..................... 26 1 1 1.00 1 1 0 0 0
...................................................CGTTACAAACAAATATATCATTCATA.............................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................CAATTGCCACGCGTCGGCGGTATACCAC................... 28 0 1 1.00 1 1 0 0 0
..............CCTTGAAACTTGTTGAACATC........................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0
.................................................CACGTTACAAACAAATATATCATTC................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
.......TGCAACTCCTTGAAACTTGTT............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1
...................................................................................................................................................................................................................CACGCGTCGGCGGTATACCAC................... 21 0 1 1.00 1 1 0 0 0
......................................................TACAAACAAATATATCATTCATATC............................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0
...............................................ATCACGTTACAAACAAATATATCATTCAT............................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................................GGTATACCACGCGGCGGCGGTGGAATA.. 27 0 1 1.00 1 0 1 0 0
.................TGAAACTTGTTGAACATTTCAAAC.................................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................................GGCGGTATACCACGCGGCGGC........... 21 0 1 1.00 1 1 0 0 0
.............................................................AAATATATCATTCATATCAATCAATAA................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.................TGAAACTTGTTGAACATTTCAAA................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
............................................................................ATCAATCAATAATCAATCATGTATCAAT................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
................................................CCACGTTACAAACAAATATATCATTC................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................................GCGGTATACCACGCGGCGGCGGGG....... 24 1 1 1.00 1 1 0 0 0
..............................................................................................................................................................................TAAAAGATTTAAGAAAAAAGGTAGT.................................................... 25 1 1 1.00 1 1 0 0 0
............CTCCTTGAAACTTGTTGAACATTTCAA.................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................TCAGCCAATTGCCACGCGTC................................ 20 0 1 1.00 1 0 1 0 0
...........................CGAACATTTCAAAAAATTATATCACTT..................................................................................................................................................................................................... 27 2 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................CCAATTGCCACGCGTCGGCGGTGTACC..................... 27 1 1 1.00 1 0 1 0 0
............................................................................................................................................................................................................CAATTGCCACGCGTCGGCGGTATACC..................... 26 0 1 1.00 1 0 1 0 0
..................................................................................CAATAATCAATCATGTATCAACTAG................................................................................................................................................ 25 3 1 1.00 1 1 0 0 0
.............................................................................CCAATCAATAATCAATCCTGTATCAATA.................................................................................................................................................. 28 2 1 1.00 1 1 0 0 0
...............................................................................................................................................................................AAAAGATTTAAGAAAAAAGGTATGT................................................... 25 1 1 1.00 1 1 0 0 0
...........................TGAACATTTCAAAAAATTATATCACGT..................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.........................................................................CATATCAATCAATAATCAATCATGTAT....................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.................................................CACGTTACAAACAAATATATCATTCGT............................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
.....................................................................CATTCATATCAATCAATAATCAATCAGG.......................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0
.................................................CACGTTACAAACAAATATATCATTGA................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0
.................................................CACGTTACAAACAAATATATCATTCAC............................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
..............................................................................................................................................................................TAAAAGATTTAAGAAAAAAGGTAT..................................................... 24 0 1 1.00 1 1 0 0 0
..............................................................................CAATCAATAATCAATCATG.......................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................................GGTATACCACGCGGCGGCGGT........ 21 0 1 1.00 1 0 1 0 0
...........................TGAACATTTCAAAAAATTATATCACTT..................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
..............................................................................CAATCAATAATCAATCATGTATCAATA.................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
..................................................................................CAATAATCAATCATGTATCAATAAAT............................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................AAAAGATTTAAGAAAAAAGGTAGT.................................................... 24 1 1 1.00 1 1 0 0 0
.................................................CACGTTACAAACAAATATATC..................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................TCAGCCAATTGCCACGCGTCG............................... 21 0 1 1.00 1 1 0 0 0
...............................................ATCACGTTACAAACAAATATATCAT................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.......TGCAACTCCTTGAAACTTGTTGAACAT......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1
.....................................................................CATTCATATCAATCAATAATCAATCAT........................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................CCAATTGCCACGCGTCGGCGGTATACC..................... 27 0 1 1.00 1 0 1 0 0
...........................................................................TATCAATCAATAATCAATCATGTATCAAT................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0
...........................................................................CATCAATCAATAATCAATCATGTAT....................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................CCAATTGCCACGCGTCGGCGGTATACCAC................... 29 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................ATAAAAGATTTAAGAAAAAAGGTATT.................................................... 26 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................TTAAGAAAAAAGGTATTTCAG................................................ 21 0 6 0.83 5 5 0 0 0
...............................................................................................................................................................................AAAAGATTTAAAAAAAAAGGTAT..................................................... 23 1 2 0.50 1 0 0 1 0
.................TGAAACTTGTTGAACAGT........................................................................................................................................................................................................................ 18 1 2 0.50 1 1 0 0 0
....................................................................................................................................................................................................................................CCACGCGGCGGCGGTGGAATACC 23 0 2 0.50 1 1 0 0 0
......................................................................................................................................................................................................................................ACGCGGCGGCGGTGGAATACC 21 0 3 0.33 1 0 1 0 0
......................................................................................................................................................................................TTAAGAAAAAAGGTATTT................................................... 18 0 6 0.33 2 2 0 0 0
.....................................................................AACTCATATCAATCAATAACC................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 1
.......................................................................................................................................................................................................GCAGCTAATTGCAACGCGT................................. 19 3 17 0.24 4 4 0 0 0
.....................................................................................................................................................................................TTTAAGAAAAAAGGTATT.................................................... 18 0 6 0.17 1 0 0 0 1
................................................................................................................................................................................AAAGGTTTAAGAAAAAAGGTATTTCAG................................................ 27 1 6 0.17 1 1 0 0 0
........................................................................................................................................................................................................CAGCTAATTGCAACGCGT................................. 18 2 7 0.14 1 1 0 0 0
.......................................................................................................................................................................................................GCAGCTAATTGCAACGCGTC................................ 20 3 8 0.13 1 1 0 0 0
.........................................................................................................................................................................ACAAATGACAGATTTAAGAAA............................................................. 21 3 15 0.07 1 0 1 0 0
....................................................................................................................................................AGAGAATCAAATAAGATAA.................................................................................... 19 2 17 0.06 1 0 0 1 0
.....................................................................................................................................................................................................................................ATCGCGGCGGCGGTGTAATA.. 20 3 17 0.06 1 0 0 0 1
.......................................................................................................................................................................................................CCAGCTAATTGCAACGCG.................................. 18 3 20 0.05 1 1 0 0 0
...............................................ACCACGTCACTAACAAATA......................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:18468425-18468675 - dan_2102 TATTTTAACGTTGAGGAACTTTGAACAACTTGTAAAGTTTTTTAATATAGTGCAATGTT---------------T---GTTTAT-------------------------ATAGTAAGTATAGT-----------TAGTTATTAGTTAGTACATAGTTATTTAT-----TATATTACTATATTATATTA--------GTACATTATATTAGTATATTATATTAG-----TTTATTCTATTTATATTTATTTTCTAAATTCTTTTTTCCATAAAGTCGGTTAACGGTGCGCAGCCGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCACCTTATGG
droBip1 scf7180000394386:3288-3438 + TATAATA-T------------------------------------TT------------A--------------------TTCT-------------------------ATTGTAATCAAAGT-----------TAAGCCT---TTAGTATTTAATTACCGGT-----TAAACAACT---TTGAATTA--------TTATAGTTTTATTATATATTATATTAT-----ATTATTTTAAATATATATAGTTTACAATTCATTTTTGTCCTCAAGATAAT------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------A------
droKik1 scf7180000302258:263838-264011 - TTTTTATAT------------------------------------AT------------TTATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATATTTTTGTAATTATTATTTATTTTTATTTCATATTTTATTACTTTATTTTATTATTATATTTTATTTATTATATATATATATTTTTTTTTTAATTATTATATTTATTTTAATTATTATTCTATTTATATTTATTGCTTTTATTATGTTTTCC------
droFic1 scf7180000454066:2984775-2984788 + CCGCCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCCG------
droEle1 scf7180000488051:517-556 - TATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAT-----TTTATTTTATTCATATATATTTCCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000763657:835-1015 - AATTCTTAA-------------------------AATTTTTTTGTAATTGCGTTTTCTT---------------G---ATTGAT--------TTATTAAATTATTATTTTTTGTCTTTATAGT-----------TAAATTC---TTAATATTTTTTTTGTAAT-----TG--------------CGTT--------TTCTGATTGATTAATCTATT-TATTAT-----TTTTTTGTCTTTATATTTCAATTCGTAATTCATTTTTTTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCGGTT------
droBia1 scf7180000300101:19-147 + ATATTATAT------------------------------------TATATT---ATATT---------------A---TATTAT-------------------------ATTAN-ATTATAGT-----------TATATTATA-TTAGTACTTATAT-TATATTATATTA--------TATTA-------------TATTAGTATTATATTATATTATATTATATTATATTATAT----T------------------------------------------------------------------ATATTATAT---------------------------------------------------------------------------------------------------------------------------------------------T------
droTak1 scf7180000411055:19715-19770 + TATTTTT-T------------------------------------TT------------TATTGTTT-----------------------------------------------------------------------------------------------------------------------T-----------------------------------------TTTATTCTTTTTTTATTTATTTTTTTA---------------------------------------------------TTC---------------------------------------------------------------------------------------------------------------------------------------------CTTTTTT------
droYak3 X:10173701-10173878 - TTATTATAT------------------------------------TA------------TTATATTATTTTATTATTTTATT----ATTATATTAT---------------------TATA-------TTATTA--------------TATTATTAT-ATTATTATATTATATTATTATATTATATTATTATATTATATTAGTATTATATTATATTA--TTAT--------ATT---ATTATATATATTCTCAAAATATCTTATATGATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTATACGGTTAA------
dp5 XL_group1a:8665908-8665940 + TGCGGAA-C------------------------------------CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCG--------------------------------------------------------------------------------------------------------------------------------------------CACCTGCCGCCGCCGGAACC------
droMoj3 scaffold_6359:419047-419179 + TATTATA-A------------------------------------TA------------TAATATTTGTATATTT---TAATATATATTATTTTAT--------------------------TTATTTTTTGTA--------------TACTATTAT-AATATGATATTG--------GTTTA-------------TATTATTATATTATTATATAATATTAT-----T-------------A---------------------------------------------------TTATTATTTTTATTTTTATTT---------------------------------------------------------------------------------------------------------------------------------------------T------
droGri2 scaffold_15203:6492402-6492434 + GTTTGCCAC------------------------------------CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGCTTGCCACCGCCACCG---------------------------------------------------------------------------------------------------------------------------------------------C------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TATTTTAACGTTGAGGAACTTTGAACAACTTGTAAAGTTTTTTAATATAGTGCAATGTT---------------T---GTTTAT-------------------------ATAGTAAGTATAGT-----------TAGTTATTAGTTAGTACATAGTTATTTAT-----TATATTACTATATTATATTA--------GTACATTATATTAGTATATTATATTAG-----TTTATTCTATTTATATTTATTTTCTAAATTCTTTTTTCCATAAAGTCGGTTAACGGTGCGCAGCCGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCACCTTATGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGC................................................................................................................................................................................26144.004451920000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCGC..............................................................................................................................................................................28130.00301486020
......................................................................................................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTGC................................................................................................................................................................................25112.0012264000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCG...............................................................................................................................................................................27111.0011821000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTG.................................................................................................................................................................................25110.0010325000
.........................................................................................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGC................................................................................................................................................................................22110.0010053020
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGG...................................................................................................................................................................................2319.009212040
.........................................................................................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCGC..............................................................................................................................................................................2418.008024020
......................................................................................................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTGCGC..............................................................................................................................................................................2717.007025000
....................................................................................................................................................................................................................................................................................................CGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCACC......2516.006060000
..................................................................................................................................................................................................................................................................................................GCCGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCAC.......2615.005140000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGT..................................................................................................................................................................................2414.004210010
....TTAACGTTGAGGAACTTTGAACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.004400000
.........................................................................................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCGCAGC...........................................................................................................................................................................2713.003120000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGC..................................................................................................................................................................................2413.003030000
....TTAACGTTGAGGAACTTTGAACAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003210000
.........................................................................................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCGCAG............................................................................................................................................................................2613.003200010
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGG................................................................................................................................................................................2613.003003000
....................................................................................................................................................................................................................................................................................................CGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCC.........2213.003030000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGT................................................................................................................................................................................2613.003002010
.........................................................................................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCG...............................................................................................................................................................................2313.003200010
..........................................................................................................................................................................................................................................................................CATAAAGTCGGTTAACGGTGC................................................................................................................................................................................2113.003012000
............................................................................................................................................................................................................................................................................TAAAGTCGGTTAACGGTGCGC..............................................................................................................................................................................2113.003012000
....TTAACGTTGAGGAACTTTGAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
.......................................................................................................................................................................................................................................................................................................CA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCACCTTA...2512.002020000
..........................................................................................................................................................................................................................................................................CATAAAGTCGGTTAACGGTGCGCA.............................................................................................................................................................................2412.002110000
....TTAACGTTGAGGAACTTTGAACAACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
.....................................................................................................................................................................................................................................................................................................GCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCACC......2412.002110000
........................................................................................................................................................................................................................................................................TCCATAAAGTCGGTTAACGGTGCGC..............................................................................................................................................................................2512.002010010
.......................................................................................................................................................................................................................................................................TTCCATAAAGTCGGTTAACGGTGC................................................................................................................................................................................2412.002011000
......................................................................................................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTGCG...............................................................................................................................................................................2612.002110000
......................................................................................................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTGCGCA.............................................................................................................................................................................2812.002200000
....TTAACGTTGAGGAACTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
....TTAACGTTGAGGAACTTTGAACAACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002020000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTT.................................................................................................................................................................................2512.002101000
.........................................................................................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCGCA.............................................................................................................................................................................2512.002010010
...................................................................................................................................................................................................................................................................................................CCGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCACC......2612.002110000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCGCA.............................................................................................................................................................................2912.002200000
........................................................................................................................................................................................................................................................................TCCATAAAGTCGGTTAACGGTGC................................................................................................................................................................................2312.002110000
....................................................................................................................................................................................................................................................................................................CGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCACCTTA...2812.002110000
............................................................................................................................................................................................................................................................................TAAAGTCGGTTAACGGTGCGCAGC...........................................................................................................................................................................2412.002020000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCGG..............................................................................................................................................................................2811.001001000
.............................................................................................................................................................................................................................................................................AAAGTCGGTTAACGGTGCGCAGC...........................................................................................................................................................................2311.001010000
..................................................................................................................................................................................................................................................................................................GCCGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCC.........2411.001010000
................................................................................................................................................................................................................................................................................................CAGCCGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGC..........2511.001010000
...................................................................................T-------------------------ATAGTAAGTATAGT-----------TAGTTA...................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................................................................................................................................................................................................................................................................................................GCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCACCTTA...2711.001100000
..............................................................................................................................................................................................................................................................................AAGTCGGTTAACGGTGCGCAGCC..........................................................................................................................................................................2311.001100000
......................................................................................................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTG.................................................................................................................................................................................2411.001001000
................................................................................................................GTAAGTATAGT-----------TAGTTATTAGT..............................................................................................................................................................................................................................................................................................................................2211.001000010
..........................................................................................................................................................................................................................................................................CATAAAGTCGGTTAACGGT..................................................................................................................................................................................1911.001100000
.......ACGTTGAGGAACTTTGAACAACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
................................................................................................................................................................................................................................................................................................CAGCCGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCC............2311.001010000
............................................................................................................................................................................................................................................................................TAAAGTCGGTTAACGGTGCGCAGCCG.........................................................................................................................................................................2611.001100000
.....TAACGTTGAGGAACTTTGAACAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..............................................................................................................TAGTAAGTATAGT-----------TAGTTATTAGT..............................................................................................................................................................................................................................................................................................................................2411.001010000
......................................................................................................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGTGCGTT.............................................................................................................................................................................2811.001100000
........................................................................................................................................................................................................................................................................TCCATAAAGTCGGTTAACGGTGCGCA.............................................................................................................................................................................2611.001010000
......................................................................................................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGGT..................................................................................................................................................................................2311.001000010
.........................................................................................................................................................................................................................................................................CCATAAAGTCGGTTAACGGTGCGT..............................................................................................................................................................................2411.001010000
........CGTTGAGGAACTTTGAACAACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................................................................................................................................................................................................................................................................................................CGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCACT......2511.001010000
....................................................................................................................................................................................................................................................................TTTTTCCATAAAGTCGGTTAACGG...................................................................................................................................................................................2411.001001000
.......ACGTTGAGGAACTTTGAACAACTT................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...TTTAACGTTGAGGAACTTTGAACAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
............................................................................................................................................................................................................................................................................TAAAGTCGGTTAACGGTGCGCAG............................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACG....................................................................................................................................................................................2211.001010000
....................................................................................................................................................................................................................................................................................................CGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCAC.......2411.001010000
.............................................................................................................................................................................................................................................................................AAAGTCGGTTAACGGTGCGCA.............................................................................................................................................................................2111.001010000
..................................................................................................................................................................................................................................................................................................GCCGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCA........2511.001010000
.....................................................................................................................................................................................................................................................................................................GCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCAC.......2311.001010000
..................................................................................................................................................................................................................................................................................................GCCGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGC..........2311.001100000
..........................................................................................................................................................................................................................................................................CATAAAGTCGGTTAACGG...................................................................................................................................................................................1811.001100000
............................................................................................................................................................................................................................................................................TAAAGTCGGTTAACGGTGCGCAGCCGC........................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................................................................................................GCCGCCA--------------------------------------------------------------------------------------------------------------------------------------------TATGGTGCGCCGCCGCCACC......2711.001010000
...TTTAACGTTGAGGAACTTTGAACAACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.......................................................................................................................................................................................................................................................................TTCCATAAAGTCGGTTAACGGTGCGC..............................................................................................................................................................................2611.001100000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGAA...............................................................................................................................................................................2711.001010000
............GAGGAACTTTGAACAACTTGTAAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCC...............................................................................................................................................................................2711.001001000
.................ACTTTGAACAACTTGTAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................................................................................................................................................................................................................................................................TTTTCCATAAAGTCGGTTAACGGTGCGT..............................................................................................................................................................................2811.001100000
........................................................................................................................................................................................................................................................................TCCATAAAGTCGGTTAACGGTGCGCAG............................................................................................................................................................................2711.001010000
.................................................................................TAT-------------------------ATAGTAAGTATAGT-----------TAGTTATTAGT..............................................................................................................................................................................................................................................................................................................................2811.001000010
........................................................................................................................................................................................................................................................................TCCATAAAGTCGGTTAACGGTGCGCAGC...........................................................................................................................................................................2811.001001000
......................................................................................................................................................................................................................................................................TTTCCATAAAGTCGGTTAACGG...................................................................................................................................................................................2211.001100000
..............GGAACTTTGAACAACTTGTAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..................................AAGTTTTTTAATATAGTGCAATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...........TGAGGAACTTTGAACAACTTGTAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
....TTAACGTTGAGGAACTTTGAACAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..........................................................................................................................................................................................................................................................................CATAAAGTCGGTTAACGGTGCGCAGCT..........................................................................................................................................................................2711.001010000
....................................................................................................................................................................................................................................................................TTTTTCCATAAAGTCGGTTAACGGTGC................................................................................................................................................................................2711.001010000
.....................................................AATGTT---------------T---GTTTAT-------------------------ATAGTAAGTATAGT-----------.........................................................................................................................................................................................................................................................................................................................................2711.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTGCGCCGCCGCCACCTTATGG2621.002020000
droBip1
TATAATA-T------------------------------------TT------------A--------------------TTCT-------------------------ATTGTAATCAAAGT-----------TAAGCCT---TTAGTATTTAATTACCGGT-----TAAACAACT---TTGAATTA--------TTATAGTTTTATTATATATTATATTAT-----ATTATTTTAAATATATATAGTTTACAATTCATTTTTGTCCTCAAGATAAT------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------A------SizeHit CountTotal NormTotal
No Reads
droKik1
TTTTTATAT------------------------------------AT------------TTATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATATTTTTGTAATTATTATTTATTTTTATTTCATATTTTATTACTTTATTTTATTATTATATTTTATTTATTATATATATATATTTTTTTTTTAATTATTATATTTATTTTAATTATTATTCTATTTATATTTATTGCTTTTATTATGTTTTCC------SizeHit CountTotal NormTotal
No Reads
droFic1
CCGCCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCCG------SizeHit CountTotal NormTotal
No Reads
droEle1
TATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAT-----TTTATTTTATTCATATATATTTCCAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AATTCTTAA-------------------------AATTTTTTTGTAATTGCGTTTTCTT---------------G---ATTGAT--------TTATTAAATTATTATTTTTTGTCTTTATAGT-----------TAAATTC---TTAATATTTTTTTTGTAAT-----TG--------------CGTT--------TTCTGATTGATTAATCTATT-TATTAT-----TTTTTTGTCTTTATATTTCAATTCGTAATTCATTTTTTTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCGGTT------SizeHit CountTotal NormTotal
No Reads
droBia1
ATATTATAT------------------------------------TATATT---ATATT---------------A---TATTAT-------------------------ATTAN-ATTATAGT-----------TATATTATA-TTAGTACTTATAT-TATATTATATTA--------TATTA-------------TATTAGTATTATATTATATTATATTATATTATATTATAT----T------------------------------------------------------------------ATATTATAT---------------------------------------------------------------------------------------------------------------------------------------------T------SizeHit CountTotal NormTotal
No Reads
droTak1
TATTTTT-T------------------------------------TT------------TATTGTTT-----------------------------------------------------------------------------------------------------------------------T-----------------------------------------TTTATTCTTTTTTTATTTATTTTTTTA---------------------------------------------------TTC---------------------------------------------------------------------------------------------------------------------------------------------CTTTTTT------SizeHit CountTotal NormTotal
No Reads
droYak3
TTATTATAT------------------------------------TA------------TTATATTATTTTATTATTTTATT----ATTATATTAT---------------------TATA-------TTATTA--------------TATTATTAT-ATTATTATATTATATTATTATATTATATTATTATATTATATTAGTATTATATTATATTA--TTAT--------ATT---ATTATATATATTCTCAAAATATCTTATATGATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTATACGGTTAA------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
dp5
TGCGGAA-C------------------------------------CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCG--------------------------------------------------------------------------------------------------------------------------------------------CACCTGCCGCCGCCGGAACC------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droMoj3
TATTATA-A------------------------------------TA------------TAATATTTGTATATTT---TAATATATATTATTTTAT--------------------------TTATTTTTTGTA--------------TACTATTAT-AATATGATATTG--------GTTTA-------------TATTATTATATTATTATATAATATTAT-----T-------------A---------------------------------------------------TTATTATTTTTATTTTTATTT---------------------------------------------------------------------------------------------------------------------------------------------T------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTTTGCCAC------------------------------------CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGCTTGCCACCGCCACCG---------------------------------------------------------------------------------------------------------------------------------------------C------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:40 AM