ID:

dan_2090

 Coordinate:

scaffold_13266:18111475-18111625 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.2 -34.9 -34.6 -34.6

Flybase annnotation

CDS [Dana\GF13774-cds]; exon [dana_GLEANR_13781:1]; intron [Dana\GF13774-in]

No Repeatable elements found

Sense Strand Reads

--------------------------########################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCAGCACGGAGCTTCCCAGGAGCAGCATGTCATCGATGTCGCCCAGTGAGGTGAGCAGCTCGGGGGGCTGGCTTATTGGGTGGTGGGTGCGTGGGTGCAGGGGTGCAGGGTGGGGCTTGCAAAGGGGGCGGGACAGCTGTGCAAATGTTTGCGATCTGCGATCTTTCACGGTTTCTCTTCCGCCTTGTCTGGTCTGCTGGACTGGCCTGGTTCAACGTCATCTTATCGTTTCAGCAAGCGAGTCTCTGACG
******************************************************************************************.((...(((((...(((((((((((((((.(((((..(((((...((...((....))..))..)))))..))))))).)))......))))))))))....)))))))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 V105
male body		 V055
head
 M058
embryo
 V039
embryo
...................................................................................................GGGGTGTAGGGTGGGGTT...................................................................................................................................... 18 2 17 43.35 737 489 199 47 2 0 0
..................................................................................................AGGGGTGTAGGGTGGGGTT...................................................................................................................................... 19 2 4 6.00 24 10 7 7 0 0 0
...............................................................................................TGAGGGGGTGCAGGGTGGGGTT...................................................................................................................................... 22 3 1 3.00 3 0 1 2 0 0 0
..................................................................................................GGGGGTGCAGGGTGGGGTT...................................................................................................................................... 19 2 2 2.50 5 0 0 5 0 0 0
...................................................................................................GGACTGCTGGGTGGGGCTTGC................................................................................................................................... 21 3 2 2.00 4 4 0 0 0 0 0
.................................................................................................GAGGGGTGTAGGGTGGGGTT...................................................................................................................................... 20 3 20 1.25 25 6 5 14 0 0 0
...................................................................................................GGGGTGCAGGGTGGGGTTG..................................................................................................................................... 19 2 4 1.25 5 4 1 0 0 0 0
..................................................................................................AGGGGTGTAGGGTGGGGTTG..................................................................................................................................... 20 3 20 1.20 24 18 6 0 0 0 0
..........GCTTCCCAGGAGCAGCATGTC............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................GTGGGTGCAGGGGTGCAGGGTGGG......................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
...GCACGGAGCTTCCCAGGAGCA................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
..ATCACGGAGCTTCCCAGGAGCAG.................................................................................................................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 1 0
.................................................................................................GAGGGGTGCAGGGTGGGGTT...................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................CAGGGGTGCAGGGTGGGGC....................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................AGGGGTGCAGGGTGGGGCTTG.................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................TGCAGGGGTGCAGGGTGGGG........................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................TATCGTTTCAGCAAGCGAGTCTC..... 23 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................GCCTTGTCTGGTCTGCTG.................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...............................................................................GTGGTGGGTGCGTGGGTGCAGGGGT................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...................................................................................TGGGTGCGTGGTTGGAGGGGTG.................................................................................................................................................. 22 2 1 1.00 1 0 0 0 1 0 0
.................................................................................................AGGGGGTGCAGGGTGGGGTT...................................................................................................................................... 20 3 20 0.75 15 11 2 2 0 0 0
...................................................................................................GGGGTGTAGGGTGGGGTTT..................................................................................................................................... 19 2 4 0.75 3 0 2 1 0 0 0
..................................................................................................................................................................................TCCGCCTTATCTGGTCTTTTG.................................................... 21 3 3 0.67 2 2 0 0 0 0 0
................................................................................................GCGGGGGTGTAGGGTGGGGTT...................................................................................................................................... 21 3 3 0.67 2 0 0 2 0 0 0
..................................................................................................AGGGGTGTAGGGTGGGGTTGG.................................................................................................................................... 21 3 11 0.64 7 4 2 1 0 0 0
...................................................................................................GGACTGCTGGGTGGGGCTTG.................................................................................................................................... 20 3 20 0.55 11 11 0 0 0 0 0
..................................................................................................AGGGGTGTAGGGTGGGGT....................................................................................................................................... 18 2 15 0.53 8 4 3 1 0 0 0
.....................................................................................................GGAGCTGGGTGGGGCTTGC................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0
...................................................................................................GGGGTGTAGGGTGGGGTTTG.................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0
................................................................................................GAGGGGGTGCAGGGTGGGGTT...................................................................................................................................... 21 3 6 0.50 3 0 3 0 0 0 0
...................................................................................................GGGGTGTAGGGTGGGGCTGG.................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0
..................................................................................................AGGGGTGCAGGGTGGGGTTG..................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................GGGGGTGCAGGGTGGGGTTG..................................................................................................................................... 20 3 20 0.40 8 3 3 2 0 0 0
......................................................................................................................................................................................................GGACTACCATGGTTCAACG.................................. 19 3 3 0.33 1 1 0 0 0 0 0
....................................................................................................GACTGCATGGTGGGGCTTGCA.................................................................................................................................. 21 3 3 0.33 1 0 0 1 0 0 0
...................................................................................................GGGGTGCAGGGTGGGGTTGG.................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0
................................................................................................GAGGGGGTGTAGGGTGGGGCT...................................................................................................................................... 21 3 7 0.29 2 0 1 1 0 0 0
...................................................................................................GGGGTGTAGGGTGGGGCTGGT................................................................................................................................... 21 3 8 0.25 2 0 1 1 0 0 0
.................................................................................................CGGGGGTGTAGGGTGGGGTT...................................................................................................................................... 20 3 10 0.20 2 2 0 0 0 0 0
........................................GCGCAGTGAGGTGAGCGG................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 1 0 0
..............................CTTCGATGTCGCCCAGCGAGC........................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 1
...................................................................................................GGGGTGTAGGGTGGGGTTGGC................................................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0
...........................................................................TTGGGGGGTAGGTGCGTG.............................................................................................................................................................. 18 2 6 0.17 1 0 0 0 1 0 0
....................................................................................................GGGTGTAGGGTGGGGCTGG.................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 1 0
....................................................................................................GGGTGTAGGGTGGGGTTTG.................................................................................................................................... 19 2 7 0.14 1 0 1 0 0 0 0
....................................................................................................GGCTGCTTGGTGGGGCTTGC................................................................................................................................... 20 3 15 0.13 2 0 0 2 0 0 0
...................................................................................................GGGCTGCTTGGTGGGGCTTGC................................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0 0
........................................TCGCAGTGAGGTTAGCAGCT............................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 1 0 0
..................................................................................................GGGGGTGCAGGGTGGGGT....................................................................................................................................... 18 2 20 0.10 2 1 1 0 0 0 0
...........................................................................TTGTGGGGTGGGTGCGTGGGTGT......................................................................................................................................................... 23 3 11 0.09 1 0 0 0 0 0 1
.................................................................GGCTGGTTTAATGGGTGGTC...................................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0
..................................................................................................TGGGGTGTAGGGTGGGGTTTG.................................................................................................................................... 21 3 12 0.08 1 0 1 0 0 0 0
.......................................................CAGCTCGGGGGGCTAGT................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 1 0 0
....................................................................................................GGGTGTAGGGTGGGGTTT..................................................................................................................................... 18 2 14 0.07 1 1 0 0 0 0 0
....................................................................TGGTTTATTGGGTGGTAG..................................................................................................................................................................... 18 2 16 0.06 1 1 0 0 0 0 0
............................................................................................................................GGGGCGGCACATCTGTGAAA........................................................................................................... 20 3 18 0.06 1 1 0 0 0 0 0
......................................................................................................................................................................................................AAACTGGCCTGGTTCTACG.................................. 19 3 19 0.05 1 1 0 0 0 0 0
......................................................................................................CTGCTGGGTGGGGCTTG.................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0
.....................................................................................................GGAGGAAGGTGGGGCTTGC................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0
....................................................................................................GGGTGTAGGGTGGGGTTGGC................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0
............................................................................................................................GGGGCGGCACATCTGTGAA............................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0
................................................................................................GAGGGGGTGTAGGGTGGGGC....................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0
..................................................................................................CGGGGTGTAGGGTGGGGTT...................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

AGTCGTGCCTCGAAGGGTCCTCGTCGTACAGTAGCTACAGCGGGTCACTCCACTCGTCGAGCCCCCCGACCGAATAACCCACCACCCACGCACCCACGTCCCCACGTCCCACCCCGAACGTTTCCCCCGCCCTGTCGACACGTTTACAAACGCTAGACGCTAGAAAGTGCCAAAGAGAAGGCGGAACAGACCAGACGACCTGACCGGACCAAGTTGCAGTAGAATAGCAAAGTCGTTCGCTCAGAGACTGC
****************************************************.((...(((((...(((((((((((((((.(((((..(((((...((...((....))..))..)))))..))))))).)))......))))))))))....)))))))****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V055
head
 V039
embryo
 V106
head
...........................................................................................................CGCACTCCAAACGTTTCCCC............................................................................................................................ 20 3 2 5.50 11 7 4 0 0 0
............................................................................................................GCACTCCAAACGTTTCCCC............................................................................................................................ 19 3 7 0.71 5 0 5 0 0 0
............................................GCACTCCAAACGTCGAGCCCC.......................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0
...............................................CGCCACTCGTCGAGCCCGGC........................................................................................................................................................................................ 20 3 4 0.25 1 0 0 0 1 0
...........................................................................................................CGCACTCCAAACGTTTCCC............................................................................................................................. 19 3 11 0.18 2 0 2 0 0 0
.............................................................................ACCACCGCCCACGCACGCACG......................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0
...........GAAGGATTCTCGTCGCACA............................................................................................................................................................................................................................. 19 3 8 0.13 1 0 0 0 0 1
.............AGGGACCTCGTCTTACAG............................................................................................................................................................................................................................ 18 2 10 0.10 1 0 1 0 0 0
.....................................................................................................CCACGACCCACCCCCAACG................................................................................................................................... 19 2 10 0.10 1 1 0 0 0 0
.........................GTACAGTGGCTAGAGCTGGT.............................................................................................................................................................................................................. 20 3 12 0.08 1 0 0 1 0 0
..................................CTACGGCGGGCCACTCTAC...................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 1 0 0
...................................TACAGCGGGTCAATCGACGC.................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:18111425-18111675 + dan_2090 TCAGCACGGAGCTTCCCAGG---------AGCA---GCATGTCATCGATGTCGCCCAGTGAGGTGAGCAGCTC-GGGGGGCT--GGCTTATTGG-GTGGT-----------------------GGGTGCGTGGGTGCA-------GGGGTG--------CAG--------------GGT------------------------GGGGCTTGCAAAGGG-----GGCGGGACAGCTGTGCAAATGTTTGCGATCTGCGATCTTTCACGGTTTCT----------------------------------------------------------------------------CTTCCGCCTT----GTCTGGTCTG----C-TG--GACTGG----------C---CTGGTTCAACGTCATCTTATCGTTTCAGC-----AAGCGAGTCT------------CTGACG
droBip1 scf7180000396735:1384486-1384735 + TCAGCACGGAGCTTCCCAGG---------AGCA---GCATGTCATCGATGTCGCCCAGTGAGGTGAGGAGCT---GGGGGCT--GGCTTATTGGGTT-TC-------------------A---TG-------GGGAAG-------AGGGTG--------CAG--------------GGT------------------------GGGGCTTACACA----GGGGGGCGGGACAGCTGTGCCAATGTTTGCGATCTGCGATCTTTCACTGTTTCT----------------------------------------------------------------------------CTTCCGCCTT----GTCTGGTCTGGCTGG-CCT-------GG-CCTGC--C---GTGGTTCAACGTCATCTTATCGTTTCAGC-----AAGCGAGTCT------------CTGACG
droKik1 scf7180000302481:80136-80382 + CCACAACGGAACGCCAGGGG---------AAAA---CCATGTCGACGATGTCGCCCAGCGAAGTAAGTTCC---TGCTGTCTTTGGTCTACTGA-------------------------------GGGTGTAATGGAA-------AGGGTGGAGGGGTGAAAC--------------A------------------------------------CCAGCCCCTTACG-ACCAGCTGTGCCAATGTTTGCGATCTGCGATCTTGGAGGGTTTCC----------------------------------------------------------------------------CTTCCGCACT----CGCAGCG-----------------------CA-C--C---CAGGTTCAACGCCATGTTATCGCTGCAACGTCGCGAA----TCGGACTTCGA-AAAGTGACG
droFic1 scf7180000454066:1079487-1079726 - TCAGAACAGATTTCCCCAGGACC------AGTA---GTATGTCTTCAATGTCGCCCAGCGAGGTGAGTTCTTT-TGAGGTCTTAAGATTGCTACGA---------------------------------------AACATAGCAGATTGTA----------GC--------------G----------------------------------AC----CGTTCCGCGTTACATCTGGGCAAATGTTTACAAGACCAG-------AAGGTTTTC----------------------------------------------------------------------------CTTCCGCAAT----ATCATGTTCAGTTTC-CA----CT----------GAG---ACGGTTCAACGTCATCTTATCGTTTTATT----TGAT----TCTGAGCTGAA-AAAGTGACG
droEle1 scf7180000491349:848582-848822 - CCAGTACGGATTTCCCCAGGACA------AGTA---GTATGTCTTCGATGTCGCCCAGCGAGGTGAGTTCCAT-TGTTGTCTTCATATT--TCCCATGTT------------------------------TATACG-A-------ATGGCA-----------------------------------------------------------------GGGGCACCACCTCACAGCTGGGCAAATGTTTACAGTGCCAG-------AAGGTTTGC----------------------------------------------------------------------------CTTCCGCAAT----CGCACGTTAAGTTCCCCAT-------T--TCG-CCAG---TAGGTTCAACGTCATCTTATCGTTCCAGC-----AAG----TCGGACTTGAAAAAAGTGACG
droRho1 scf7180000779999:153699-153938 - CCAAGACGGATTTCCCCAGGACT------AGTA---GTATGTCTTCGATGTCGCCCAGTGAGGTGAGTTCCCT-TGGGGTCTTGAGATT--TCCGAGGAT------------------------------CATACG-G-------ATGGTG-----------------------------------------------------------------GGAGTACCACCTTACAGCTGGGCAAATGTTTACGGTCCCAG-------AAGGTTGGC----------------------------------------------------------------------------CTTCCGCAAT----CACACGTTGAGTTGCTCAT-------T--CCG-CCAG---TAGGTTCAACGTCATCTTATCGTTGCAGA-----CAT----TCGGACTTGAA-TAAGTGACG
droBia1 scf7180000301506:317212-317454 + TCAGGACGGATCTCCCCAGGACAAGTCGCA---GTAGCATGTCTTCGATGTCGCCCAGCGAGGTGAGTTCTGT-GGGGGTCTTGGGATT---TCGATTTT-----------------------CGA------TTCCA-------------A----------------------------------------------------------------GGGGGCTTCACCAAGCAGCTGGTTAAATATTTGCGATCCCAGAAG-CACAAGGTTTCC----------------------------------------------------------------------------CACACGCAAT----CGAGCTTTAA--TGC-----------C--CCT-CGAG---CAGGTTCAACGTCATCTTATCGTTCCAAA-----GAT----TCGGAGCTACAGAAAGTGACG
droTak1 scf7180000415877:206750-206993 - TCAGGACGGATTTGCCCAGGACC---AGTA---GTAGGATGTCTTCGATGTCGCCCAGCGAGGTGAGTTATC--GGGGGTCTTGCGACT---TCCATTTC-----------------------CAA---------------------AGTA---------------------------------------------------------------CGGGGGTTTTACCAAGCAGCTGGGCAAATGTTTACGATCCCAGCAA-CAGAAGGCTTCC----------------------------------------------------------------------------CTTCCGCAGT----CGCACTTCGAGTTTC-CAT-------TCCCCG-CGAG---AGGGTTCAACGTCATCTTATCGTTCCAGC-----GAC----TCGGAGCTGAA-AAAGTGACG
droEug1 scf7180000409672:4414529-4414766 - TCAGGACGGATAACCCTAGGACAAGTAGCA---GTAGCATGTCATCGATGTCGCCCAGCGAGGTGAGTTTTCT-TGTGGTCTTGACATT---TCGATATT-----------------------T----------CC-T-------ATTGTA----------------------------------------------------------------GGGGGTACCACCAAGCAGCTAGGCAAATGTTTACGATCACAT-------AAGACTCCC----------------------------------------------------------------------------CTTCCTCATT----------TCGAGTGCC-CAT-------T--CCAGGCAT---AAGGTTCAACGTCATCTTATCGTTCTAGT-----GAT----TCGGAGCTGAAATAAGTGACG
dm3 chr2R:6619243-6619500 + CCAGGACGGATTTCCCCAAGACAAGCAGTA---GTAGTATGTCTTCGAAGTCGCCAAGCGAGGTGAGTTCCCTTTGAAGTCTTGGGATAATTTCGATATC-----------------------CGAGGCGTATTCAAT-------ATAGTA----------------------------------------------------------------GAGGGTTTTAAC-CGCAGCTGGGCAAATGTTAACGATCCGGA-------AAGGTTTCC----------------------------------------------------------------------------CTTCCGCAAT----CGCGTGTCGGACTGC-CAT-------C--CCA-CGAGTAGAAGGTTCAACGTCATCTTATCGTTCTAGA-----GAT----TCATAGCTGA--GGAGTGACA
droSim2 2r:7357619-7357875 + TCAGGACGGATTTCCCCAAGACAAGCAGTA---GTAGTATGTCTTCGAAGTCGCCCAGCGAGGTGAGTTCCCT-GGAAGTCTTGGGATAATTTCGATATC-----------------------CGAGGCGTATTCAAA-------ATAGTA----------------------------------------------------------------GAGGGTTTTACC-CGCAGCTGGGCAAATGTTTACGATCCGAG-------AAGGTTTCC----------------------------------------------------------------------------CTTTCGCAAT----CGCGTGTCAGGCTGC-CAT-------C--CCA-CGAGTAGAAGGTTCAACGTCATCTTATCGTTCTAGA-----GAT----TCATAGCTGA--GGAGTGACG
droSec2 scaffold_1:4199549-4199805 + CCAGGACGGATTTCCCCAAGACAAGCAGTA---GTAGTATGTCTTCGAAGTCGCCCAGCGAGGTGAGTTCCCT-GGAAGTCTTGGGATAATTTCGATATA-----------------------TGAGGCGTATTCAAA-------ATAGTA----------------------------------------------------------------GAGGGTTTTACC-CGCAGCTGGGCAAATGTTTACGATTCGAG-------AAGGTTTCC----------------------------------------------------------------------------CTTCCGCAAT----CGCGTGTCAGGCTGC-CAT-------C--CCA-CGAGTAGAAGGTTCAACGTCATCTTATCGTTCTAGA-----GAT----TCATAGCTGA--GGAGTGACG
droYak3 2R:2539858-2540072 - CAAGGACGGACTTCCCCAGTAGCAGCAGTA---GTAGTATGTCTTCGATGTCGCCCAGCGAGGTGAGTTCTCT-GGAAGTCTTTGGATTATTTCGATATT-----------------------CGAAGCGTATGTAAA-------ACAGTA----------------------------------------------------------------GAGGGTTTCACC-CGCAGCTGGGCAAATATTTACGATCCGA----------GGCTTTC----------------------------------------------------------------------------CTTCCGCAAT----TGCAAGTCGGGTTGC-CAT-------C--CCA-C--G---AAGGTTCAACGTCATC---------------------------------------------G
droEre2 scaffold_4845:19158042-19158257 - CAAGGACGGATTTCCCCAGGACAAGCAGTA---CCAGTATGTCTTCGATGTCGCCCAGCGAGGTGAGTTGTCT-GGCAGTCTTGGGATTATTTCGATATC-----------------------C-------------------------------------------------------------------------------------------GAGGGTTTTACC-CGCAGCTGGGCAAATATTTACAATCCGAG----------GGTTTT----------------------------------------------------------------------------CTTCCGCAAT----CACATGTCGGTGTGC-CAT-------A---CA-CG-----AGAGTTCAACCAC-----ATCGTTCTAGA-----GAT----CCAGAGCT---------GAGG
dp5 3:16029102-16029353 - TCACCACGGATATCACAAAG---------AGCA---ACATGACGGCAATGTCGCCGAGTGAGGTGAGTGTTCCATGGAGCGGCG-GACGGTCCC------CCCTCCCCGCG----------------------------------------------------------------------------------------------------------------CACT-CGCACTTGTGCAAATGTTTGCCTGCTGCC-------GGCGT---CTGGTTT----------------------CTGCGGGGATCCGCCCTTCGCCCACCTCCATCGGACCGTCCCGTTCCTCTTCCGCACA------------------------CATTGC---------AC---AAGGTTCAACGTCACCTTATCGTTTCGGC-----GAC----CTGGG--CGC--AGAGTGACG
droPer2 scaffold_4:736183-736434 + TCACCACGGATATCACAAAG---------AGCA---ACATGACGGCAATGTCGCCGAGTGAGGTGAGTGTTCCATGGAGCGGCG-GACGGTCCT------CCCTCCCCGCG----------------------------------------------------------------------------------------------------------------CACT-CGCACTTGTGCAAATGTTTGCCTGCTGCC-------GGCGT---CTGGTTT----------------------CTGCGGGGATCCGCCCTTCGCCCACCTCCATCGGACCGTCCCGTTCCTCTTCCGCACA------------------------CATTGC---------AC---AAGGTTCAACGTCACCTTATCGTTTCGGC-----GAC----CTGGG--CGC--AGAGTGACG
droVir3 scaffold_12875:16622300-16622563 + dvi_7323 -----------------------------AGGA---ATATGTCATCAATGTCGCCCAGTGAGGTGAGTGGCTT---AT----------------------CCCTAGCTGTCTAGTTGTCTAGCTGG------CAGC-A-------GCAGCA----------GCAGCAGCTGTGCGTCGCACAACAATTAAACGGCGTTAAAAAAAAGCGTACG----------CAA-AAGCAGTTGTGCAAATGTTTGTTGTCAGCT-------GCTGC---GCTGTCG----------------------CTGCCGGCTGCTGCGCGTCGTCTGCCCA-----------TCAGTTTTTTGTTT-----------------TA----G-CG--CGCTGC----------A---CAGGTTCAACGTCATCTTATCGCTGCAGC-----GAA----C--------------------
droMoj3 scaffold_6496:7127509-7127626 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTGTGCAAATGTTTGTTGTCAGCT-------GCTGCTG-C----CGCTCGCAACCGCAACCGAAGCCACTGCC----------------------------------------------------GGTA-------GCAATTTTC-AA--CATTGT----------A---CAGGTTCAACGTCATCTTATCGCTGCGAC-----GA--------------------------
droGri2 scaffold_15245:5449129-5449234 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTGTGTAAATGTTTGCTGTCAGCT-------GCTATTGCT--ATTG----------------------CTGCC----------------------------------------------------GGTAAGCCGCCGTTG----C-TGAGCACTGC----------T---CAGGTTCAACGTCGTCTTATCGCCGCTGC-----A-----------------------GATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCAGCACGGAGCTTCCCAGG---------AGCA---GCATGTCATCGATGTCGCCCAGTGAGGTGAGCAGCTC-GGGGGGCT--GGCTTATTGG-GTGGT-----------------------GGGTGCGTGGGTGCA-------GGGGTG--------CAG--------------GGT------------------------GGGGCTTGCAAAGGG-----GGCGGGACAGCTGTGCAAATGTTTGCGATCTGCGATCTTTCACGGTTTCT----------------------------------------------------------------------------CTTCCGCCTT----GTCTGGTCTG----C-TG--GACTGG----------C---CTGGTTCAACGTCATCTTATCGTTTCAGC-----AAGCGAGTCT------------CTGACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........GCTTCCCAGG---------AGCA---GCATGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.................................................................................................................................GTGGGTGCA-------GGGGTG--------CAG--------------GGT------------------------GGG...................................................................................................................................................................................................................................................................2411.001000001
...GCACGGAGCTTCCCAGG---------AGCA---.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
........................................................................................................................................CA-------GGGGTG--------CAG--------------GGT------------------------GGGGC.................................................................................................................................................................................................................................................................1911.001000001
.........................................................................................................................................A-------GGGGTG--------CAG--------------GGT------------------------GGGGCTTG..............................................................................................................................................................................................................................................................2111.001100000
......................................................................................................................................TGCA-------GGGGTG--------CAG--------------GGT------------------------GGGG..................................................................................................................................................................................................................................................................2011.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGTTTCAGC-----AAGCGAGTCT------------C.....2311.001100000
..................................................................................................................................................................................................................................................................................................................................................................GCCTT----GTCTGGTCTG----C-TG--..................................................................................1811.001100000
...............................................................................................GTGGT-----------------------GGGTGCGTGGGTGCA-------GGGGT...........................................................................................................................................................................................................................................................................................................................2511.001000001
droBip1
TCAGCACGGAGCTTCCCAGG---------AGCA---GCATGTCATCGATGTCGCCCAGTGAGGTGAGGAGCT---GGGGGCT--GGCTTATTGGGTT-TC-------------------A---TG-------GGGAAG-------AGGGTG--------CAG--------------GGT------------------------GGGGCTTACACA----GGGGGGCGGGACAGCTGTGCCAATGTTTGCGATCTGCGATCTTTCACTGTTTCT----------------------------------------------------------------------------CTTCCGCCTT----GTCTGGTCTGGCTGG-CCT-------GG-CCTGC--C---GTGGTTCAACGTCATCTTATCGTTTCAGC-----AAGCGAGTCT------------CTGACGSizeHit CountTotal NormTotal
No Reads
droKik1
CCACAACGGAACGCCAGGGG---------AAAA---CCATGTCGACGATGTCGCCCAGCGAAGTAAGTTCC---TGCTGTCTTTGGTCTACTGA-------------------------------GGGTGTAATGGAA-------AGGGTGGAGGGGTGAAAC--------------A------------------------------------CCAGCCCCTTACG-ACCAGCTGTGCCAATGTTTGCGATCTGCGATCTTGGAGGGTTTCC----------------------------------------------------------------------------CTTCCGCACT----CGCAGCG-----------------------CA-C--C---CAGGTTCAACGCCATGTTATCGCTGCAACGTCGCGAA----TCGGACTTCGA-AAAGTGACGSizeHit CountTotal NormTotal
No Reads
droFic1
TCAGAACAGATTTCCCCAGGACC------AGTA---GTATGTCTTCAATGTCGCCCAGCGAGGTGAGTTCTTT-TGAGGTCTTAAGATTGCTACGA---------------------------------------AACATAGCAGATTGTA----------GC--------------G----------------------------------AC----CGTTCCGCGTTACATCTGGGCAAATGTTTACAAGACCAG-------AAGGTTTTC----------------------------------------------------------------------------CTTCCGCAAT----ATCATGTTCAGTTTC-CA----CT----------GAG---ACGGTTCAACGTCATCTTATCGTTTTATT----TGAT----TCTGAGCTGAA-AAAGTGACGSizeHit CountTotal NormTotal
No Reads
droEle1
CCAGTACGGATTTCCCCAGGACA------AGTA---GTATGTCTTCGATGTCGCCCAGCGAGGTGAGTTCCAT-TGTTGTCTTCATATT--TCCCATGTT------------------------------TATACG-A-------ATGGCA-----------------------------------------------------------------GGGGCACCACCTCACAGCTGGGCAAATGTTTACAGTGCCAG-------AAGGTTTGC----------------------------------------------------------------------------CTTCCGCAAT----CGCACGTTAAGTTCCCCAT-------T--TCG-CCAG---TAGGTTCAACGTCATCTTATCGTTCCAGC-----AAG----TCGGACTTGAAAAAAGTGACGSizeHit CountTotal NormTotal
No Reads
droRho1
CCAAGACGGATTTCCCCAGGACT------AGTA---GTATGTCTTCGATGTCGCCCAGTGAGGTGAGTTCCCT-TGGGGTCTTGAGATT--TCCGAGGAT------------------------------CATACG-G-------ATGGTG-----------------------------------------------------------------GGAGTACCACCTTACAGCTGGGCAAATGTTTACGGTCCCAG-------AAGGTTGGC----------------------------------------------------------------------------CTTCCGCAAT----CACACGTTGAGTTGCTCAT-------T--CCG-CCAG---TAGGTTCAACGTCATCTTATCGTTGCAGA-----CAT----TCGGACTTGAA-TAAGTGACGSizeHit CountTotal NormTotal
No Reads
droBia1
TCAGGACGGATCTCCCCAGGACAAGTCGCA---GTAGCATGTCTTCGATGTCGCCCAGCGAGGTGAGTTCTGT-GGGGGTCTTGGGATT---TCGATTTT-----------------------CGA------TTCCA-------------A----------------------------------------------------------------GGGGGCTTCACCAAGCAGCTGGTTAAATATTTGCGATCCCAGAAG-CACAAGGTTTCC----------------------------------------------------------------------------CACACGCAAT----CGAGCTTTAA--TGC-----------C--CCT-CGAG---CAGGTTCAACGTCATCTTATCGTTCCAAA-----GAT----TCGGAGCTACAGAAAGTGACGSizeHit CountTotal NormTotal
No Reads
droTak1
TCAGGACGGATTTGCCCAGGACC---AGTA---GTAGGATGTCTTCGATGTCGCCCAGCGAGGTGAGTTATC--GGGGGTCTTGCGACT---TCCATTTC-----------------------CAA---------------------AGTA---------------------------------------------------------------CGGGGGTTTTACCAAGCAGCTGGGCAAATGTTTACGATCCCAGCAA-CAGAAGGCTTCC----------------------------------------------------------------------------CTTCCGCAGT----CGCACTTCGAGTTTC-CAT-------TCCCCG-CGAG---AGGGTTCAACGTCATCTTATCGTTCCAGC-----GAC----TCGGAGCTGAA-AAAGTGACGSizeHit CountTotal NormTotal
No Reads
droEug1
TCAGGACGGATAACCCTAGGACAAGTAGCA---GTAGCATGTCATCGATGTCGCCCAGCGAGGTGAGTTTTCT-TGTGGTCTTGACATT---TCGATATT-----------------------T----------CC-T-------ATTGTA----------------------------------------------------------------GGGGGTACCACCAAGCAGCTAGGCAAATGTTTACGATCACAT-------AAGACTCCC----------------------------------------------------------------------------CTTCCTCATT----------TCGAGTGCC-CAT-------T--CCAGGCAT---AAGGTTCAACGTCATCTTATCGTTCTAGT-----GAT----TCGGAGCTGAAATAAGTGACGSizeHit CountTotal NormTotal
No Reads
dm3
CCAGGACGGATTTCCCCAAGACAAGCAGTA---GTAGTATGTCTTCGAAGTCGCCAAGCGAGGTGAGTTCCCTTTGAAGTCTTGGGATAATTTCGATATC-----------------------CGAGGCGTATTCAAT-------ATAGTA----------------------------------------------------------------GAGGGTTTTAAC-CGCAGCTGGGCAAATGTTAACGATCCGGA-------AAGGTTTCC----------------------------------------------------------------------------CTTCCGCAAT----CGCGTGTCGGACTGC-CAT-------C--CCA-CGAGTAGAAGGTTCAACGTCATCTTATCGTTCTAGA-----GAT----TCATAGCTGA--GGAGTGACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................T-------ATAGTA----------------------------------------------------------------GAGGGTTTTCT...............................................................................................................................................................................................................................................1824.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010001100000000000000000000010000000000
..........................AGTA---GTAGTATGTCTTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CGAGGCGTATTCAAT-------ATAGT...........................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................A-CGAGTAGAAGGTTCAACGTC.................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000
.......................AGCAGTA---GTAGTATGTCTTCGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CTGC-CAT-------C--CCA-CGAGTAGAAG...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................GCAAATGTTAACGATCCGGA-------AAGGTT...................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTATCGTTCTAGA-----GAT----TCATAGCT.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.......................................................................................................................................................................................................................................AGCTGGGCAAATGTTAACG.......................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AATGTTAACGATCCGGA-------AAGGT....................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................CTTCGAAGTCGCCAAGCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGTTCTAGA-----GAT----TCATAGCTG............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................A---GTAGTATGTCTTCGAAGTCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AGTATGTCTTCGAAGTCGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....ACGGATTTCCCCAAGACAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................AC-CGCAGCTGGGCAAATG.............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AGCTGGGCAAATGTTAAC........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................GTAGTATGTCTTCGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCCCCAAGACAAGCAGTA---GTAGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAGGACGGATTTCCCCAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TCGAAGTCGCCAAGCGAGGTG................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GGATTTCCCCAAGACAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................AT-------ATAGTA----------------------------------------------------------------GAGGGTTTTCT...............................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTCTAGA-----GAT----TCATG................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................CTTCCGCAAT----CGCGTGTCGGACTG........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................TGTTAACGATCCGGA-------AAGGTT...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................A-----GAT----TCATAGCTGA--GGAGTG...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................GTCTTCGAAGTCGCCAAGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................T----CGCGTGTCGGACTGC-CAT-------C--C........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........GATTTCCCCAAGACAAGCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................TATGTCTTCGAAGTCGCCAAGCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................GCAGCTGGGCAAATGTTA..........................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TGC-CAT-------C--CCA-CGAGTAGAAGG..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTGAGTTCCCTTTGAAGTCTT..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.............CCCCAAGACAAGCAGTA---GTAGTATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................ATTTCGATATC-----------------------CGAGGCGTAT............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................ATGTTAACGATCCGGA-------AAGGT....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................GTATGTCTTCGAAGTCGCCAAGCGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................CGCAGCTGGGCAAATGTTAAC........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................T-------ATAGTA----------------------------------------------------------------GAGGGTTTTCTA-.............................................................................................................................................................................................................................................19180.5090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010010000000000000000000000000000000001002000000
.....................................................................................................................................................................................................................................GCAGCTGGGCAAATGTTG..........................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCAGGACGGATTTCCCCAAGACAAGCAGTA---GTAGTATGTCTTCGAAGTCGCCCAGCGAGGTGAGTTCCCT-GGAAGTCTTGGGATAATTTCGATATC-----------------------CGAGGCGTATTCAAA-------ATAGTA----------------------------------------------------------------GAGGGTTTTACC-CGCAGCTGGGCAAATGTTTACGATCCGAG-------AAGGTTTCC----------------------------------------------------------------------------CTTTCGCAAT----CGCGTGTCAGGCTGC-CAT-------C--CCA-CGAGTAGAAGGTTCAACGTCATCTTATCGTTCTAGA-----GAT----TCATAGCTGA--GGAGTGACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................AGCAGTA---GTAGTATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1612.00200000000200000000
...............................................................................................................................................................................................................................................................................................................................................................TTCGCAAT----CGCGTGTCAGGCT.........................................................................................2112.00202000000000000000
................................................................................................................................................................................................................................................................................................................................................................TCGCAAT----CGCGTGTCAGGCTG........................................................................................2111.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAGGTTCAACGTCATCTT............................................2111.00100000010000000000
.............................A---GTAGTATGTCTTCGAAGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................CGCAAT----CGCGTGTCAGGCT.........................................................................................1911.00100000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................C--CCA-CGAGTAGAAGGTTCAACGTCAT...............................................2611.00100100000000000000
droSec2
CCAGGACGGATTTCCCCAAGACAAGCAGTA---GTAGTATGTCTTCGAAGTCGCCCAGCGAGGTGAGTTCCCT-GGAAGTCTTGGGATAATTTCGATATA-----------------------TGAGGCGTATTCAAA-------ATAGTA----------------------------------------------------------------GAGGGTTTTACC-CGCAGCTGGGCAAATGTTTACGATTCGAG-------AAGGTTTCC----------------------------------------------------------------------------CTTCCGCAAT----CGCGTGTCAGGCTGC-CAT-------C--CCA-CGAGTAGAAGGTTCAACGTCATCTTATCGTTCTAGA-----GAT----TCATAGCTGA--GGAGTGACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTCATCTTATCGTTCTA...................................2112.0022000
...................................AGTATGTCTTCGAAGTCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
......................................................................................ATAATTTCGATATA-----------------------TGAGGCG...............................................................................................................................................................................................................................................................................................................................................2111.0011000
..................................................................GTTCCCT-GGAAGTCTTGGGAT.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
..........................................................................................TTTCGATATA-----------------------TGAGGCGTAT............................................................................................................................................................................................................................................................................................................................................2011.0010010
....................ACAAGCAGTA---GTAGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.............................A---GTAGTATGTCTTCGAAGTCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................................................GC-CAT-------C--CCA-CGAGTAGAAGGT.........................................................2111.0010001
droYak3
CAAGGACGGACTTCCCCAGTAGCAGCAGTA---GTAGTATGTCTTCGATGTCGCCCAGCGAGGTGAGTTCTCT-GGAAGTCTTTGGATTATTTCGATATT-----------------------CGAAGCGTATGTAAA-------ACAGTA----------------------------------------------------------------GAGGGTTTCACC-CGCAGCTGGGCAAATATTTACGATCCGA----------GGCTTTC----------------------------------------------------------------------------CTTCCGCAAT----TGCAAGTCGGGTTGC-CAT-------C--CCA-C--G---AAGGTTCAACGTCATC---------------------------------------------GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........CTTCCCCAGTAGCAGCAGTA---GTAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
............TCCCCAGTAGCAGCAGTA---GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEre2
CAAGGACGGATTTCCCCAGGACAAGCAGTA---CCAGTATGTCTTCGATGTCGCCCAGCGAGGTGAGTTGTCT-GGCAGTCTTGGGATTATTTCGATATC-----------------------C-------------------------------------------------------------------------------------------GAGGGTTTTACC-CGCAGCTGGGCAAATATTTACAATCCGAG----------GGTTTT----------------------------------------------------------------------------CTTCCGCAAT----CACATGTCGGTGTGC-CAT-------A---CA-CG-----AGAGTTCAACCAC-----ATCGTTCTAGA-----GAT----CCAGAGCT---------GAGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................AGGTGAGTTGTCT-GGCAGTCTTGGGAT.........................................................................................................................................................................................................................................................................................................................................................................................2715.0050000005
dp5
TCACCACGGATATCACAAAG---------AGCA---ACATGACGGCAATGTCGCCGAGTGAGGTGAGTGTTCCATGGAGCGGCG-GACGGTCCC------CCCTCCCCGCG----------------------------------------------------------------------------------------------------------------CACT-CGCACTTGTGCAAATGTTTGCCTGCTGCC-------GGCGT---CTGGTTT----------------------CTGCGGGGATCCGCCCTTCGCCCACCTCCATCGGACCGTCCCGTTCCTCTTCCGCACA------------------------CATTGC---------AC---AAGGTTCAACGTCACCTTATCGTTTCGGC-----GAC----CTGGG--CGC--AGAGTGACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................TGCGGGGATCCGCCCTTCGC...............................................................................................................................................2011.0010100000000
droPer2
TCACCACGGATATCACAAAG---------AGCA---ACATGACGGCAATGTCGCCGAGTGAGGTGAGTGTTCCATGGAGCGGCG-GACGGTCCT------CCCTCCCCGCG----------------------------------------------------------------------------------------------------------------CACT-CGCACTTGTGCAAATGTTTGCCTGCTGCC-------GGCGT---CTGGTTT----------------------CTGCGGGGATCCGCCCTTCGCCCACCTCCATCGGACCGTCCCGTTCCTCTTCCGCACA------------------------CATTGC---------AC---AAGGTTCAACGTCACCTTATCGTTTCGGC-----GAC----CTGGG--CGC--AGAGTGACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................TGGAGCGGCG-GACGGTCCT------C............................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.....ACGGATATCACAAAG---------AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droVir3
-----------------------------AGGA---ATATGTCATCAATGTCGCCCAGTGAGGTGAGTGGCTT---AT----------------------CCCTAGCTGTCTAGTTGTCTAGCTGG------CAGC-A-------GCAGCA----------GCAGCAGCTGTGCGTCGCACAACAATTAAACGGCGTTAAAAAAAAGCGTACG----------CAA-AAGCAGTTGTGCAAATGTTTGTTGTCAGCT-------GCTGC---GCTGTCG----------------------CTGCCGGCTGCTGCGCGTCGTCTGCCCA-----------TCAGTTTTTTGTTT-----------------TA----G-CG--CGCTGC----------A---CAGGTTCAACGTCATCTTATCGCTGCAGC-----GAA----C--------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................CT-------GCTGC---GCTGTCG----------------------CTGCCG..............................................................................................................................................................2016.006000000000010001100100000000000200000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................GCCGGCTGCTGCGCGTCGTCTGCCCT-----------.............................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000003
...............................................................................................................................................................................................................................................................CT-------GCTGC---GCTGTCG----------------------CTGCCGG.............................................................................................................................................................2113.003000000000000000000000010000000110000000000000000000000000000000
...............................GA---ATATGTCATCAATGTCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CT-------GCTGC---GCTGTCG----------------------CTGC................................................................................................................................................................1811.001000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CT-------GCTGC---GCTGTCG----------------------CTGCCGT.............................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTGTGCAAATGTTTGTTGTCAGCT-------GCTGCTG-C----CGCTCGCAACCGCAACCGAAGCCACTGCC----------------------------------------------------GGTA-------GCAATTTTC-AA--CATTGT----------A---CAGGTTCAACGTCATCTTATCGCTGCGAC-----GA--------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTGTGTAAATGTTTGCTGTCAGCT-------GCTATTGCT--ATTG----------------------CTGCC----------------------------------------------------GGTAAGCCGCCGTTG----C-TGAGCACTGC----------T---CAGGTTCAACGTCGTCTTATCGCCGCTGC-----A-----------------------GATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:38 AM