ID:

dan_2075

 Coordinate:

scaffold_13266:17263473-17263623 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dana\GF13729-cds]; exon [dana_GLEANR_13736:1]; intron [Dana\GF13729-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGATCAGAGTACCGATGATCAGGTTAGCGTCAACTCACAGGATGCCGATGGTGAGTGCTTTTCGCTTTAGTCCTTTGTTTCAGGGTGCTGTCTCCCCTCTGGTTCGAGGTTCGAGGATGAAGGAAGAAATTCGATTGCGTGTCCTGTCATCTTTGGGTTCTTGGGGCCAAGTAGTTGGCATTTTCTAGCTGCCGCGTGTTGTAAAATTCTAGCTAGAGTTATTTTTAGTCTCCTAGTTTTTTCCTTTTATT
**************************************************(((((.....)))))..((((.(((((...))))).)))).........((((((.((((((((((((((((((.......((....))..)))).)))))))))))..))).)))))).((((((((......)))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 V055
head
 V106
head
 M058
embryo
 V039
embryo
.....................................................................................................................................................TCTTTGGGTTCTGGGGGGA................................................................................... 19 3 20 43.00 860 583 223 20 34 0 0
.....................................................................................................................................................TCTTTGGGTTCTGGGGGG.................................................................................... 18 2 12 20.83 250 180 39 3 28 0 0
....................................................................................................................................................GTCTTTGGGTTCTGGGGG..................................................................................... 18 2 15 18.53 278 165 86 8 12 6 1
......................................................................................................................................................CTTTGGGTTCTGGGGGG.................................................................................... 17 2 20 3.55 71 0 0 71 0 0 0
......................................................................................................................................................CTTTGGGTTCTGGGGGGC................................................................................... 18 2 8 3.38 27 2 5 16 4 0 0
........GTACCGATGATCAGGTTAGC............................................................................................................................................................................................................................... 20 0 1 3.00 3 0 1 1 0 1 0
....................AGGTTAGTGTAAACTCTCAG................................................................................................................................................................................................................... 20 3 3 1.67 5 5 0 0 0 0 0
....................................................................................................................................................ATCTTTGGGTTCTGGGGGGA................................................................................... 20 3 12 1.50 18 0 13 0 5 0 0
....................................................................................................................................................ATCTTTGGGTTCTGGGGGG.................................................................................... 19 2 3 1.33 4 0 3 0 1 0 0
.............GATGATCAGGTTAGCGTCAACTCACAG................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........GGACCGATGATCAGGTTAGC............................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0
........................................................................................................................................................TTGGGTTCTTGGGCCCA.................................................................................. 17 1 1 1.00 1 0 0 1 0 0 0
........GTACCGATGATCAGGTTAGCGT............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0
...................CAGGTTAGCGTCAACTCACAGGATGCC............................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0
..........ACCGATGATCAGGTTAGC............................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0
..........................................................................................................................................................................GAAGTTGGCATTTTCTAGTTGCA.......................................................... 23 3 1 1.00 1 0 0 0 0 0 1
......................................................................................................................................................CTTTGGGTTCTGGGGGCCGTGT............................................................................... 22 3 1 1.00 1 0 0 1 0 0 0
..ATCAGAGTACCGATGATCAGGT................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1
....CAGAGTACCGATGATCAGGT................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1
....................................................................................................................................................GTCTTTGGGTTCTTGGGG..................................................................................... 18 1 2 1.00 2 0 2 0 0 0 0
..ATCAGAGTACCGATGATCAGGTTAGC............................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0
.......................................................................................................................................................TTTGGGTTCTCGGGGCCA.................................................................................. 18 1 2 0.50 1 0 0 1 0 0 0
.......................................................................................................................................................TTTGGGTTCTGGGGGCCATCT............................................................................... 21 3 2 0.50 1 0 0 1 0 0 0
....................................................................................................................................................GTCTTTGGGTTCTGGGGGGCA.................................................................................. 21 3 4 0.50 2 0 2 0 0 0 0
......................................................................................................................................................CTTTGGGTTCTGGGGGCA................................................................................... 18 2 11 0.45 5 2 2 1 0 0 0
.......................................................................................................................................................TTTGGGTTCTTGGGGGGGAGT............................................................................... 21 3 11 0.45 5 1 3 0 1 0 0
.....................................................................................................................................................TCTTTGGGTTCTGGGGG..................................................................................... 17 1 3 0.33 1 0 0 1 0 0 0
.......................................................................................................................................................TTTGGGTTCTTGGGGGGGAGTA.............................................................................. 22 3 3 0.33 1 0 1 0 0 0 0
......................................................................................................................................................CTTTGGGTTCTGGGGGCCGT................................................................................. 20 3 10 0.30 3 0 0 3 0 0 0
....................................................................................................................................................ATCTTTGGGTTCTGGGGGGAA.................................................................................. 21 3 8 0.25 2 0 2 0 0 0 0
.....................................................................................................................................................TCTTTGGGTTCTTGGGGGA................................................................................... 19 2 12 0.25 3 1 1 0 1 0 0
.......................................................................................................................................................TTTGGGTTCTTGGGGGC................................................................................... 17 1 5 0.20 1 0 0 1 0 0 0
....................................................................................................................................................GTCTTTGGGTTCTAGGGG..................................................................................... 18 2 7 0.14 1 0 1 0 0 0 0
......................................................................................................................................................CTTTGGGTTCTTGGGGAG................................................................................... 18 2 14 0.14 2 0 2 0 0 0 0
......................................................................................................................................................CTTTGGGTTCTGGGGGACGA................................................................................. 20 3 8 0.13 1 0 0 1 0 0 0
.......................................................................................................................................................TTTGGGTTCTGGGGGCCG.................................................................................. 18 2 8 0.13 1 0 0 1 0 0 0
.......................................................................................................................................................TTTGGGTTCTTGGGGCCTT................................................................................. 19 2 8 0.13 1 0 0 1 0 0 0
....................................................................................................................................................GTCTTTGGGTTCTTGGGGG.................................................................................... 19 2 9 0.11 1 0 1 0 0 0 0
......................................................................................................................................................CTTTGGGTTCTGGGGGGCATG................................................................................ 21 3 9 0.11 1 1 0 0 0 0 0
......................................................................................................................................................CTTTGGGTTCTCGGGGCCGT................................................................................. 20 3 9 0.11 1 0 0 1 0 0 0
........................................................................................................................................................TTGGGTTCTTGGGGGGGAGTA.............................................................................. 21 3 9 0.11 1 0 1 0 0 0 0
......................................................................................................................................................CTTTGGGTTCTGGGGGTC................................................................................... 18 2 19 0.11 2 0 0 2 0 0 0
.......................................................................................................................................................TTTGGGTTCTTGGGGGCG.................................................................................. 18 2 20 0.10 2 0 0 1 1 0 0
........................................................................................................................................................TTGGGTTCTTGGGGGC................................................................................... 16 1 11 0.09 1 0 0 1 0 0 0
......................................................................................................................................................ATTTGGGTTCTGGGGGCC................................................................................... 18 2 13 0.08 1 0 0 1 0 0 0
.......................................................................................................................................................TTTGGGTTCTTGGGGGCGTGT............................................................................... 21 3 13 0.08 1 0 0 1 0 0 0
...................................................................................................................................................CGTCTTTGGGTTCTGGGGGG.................................................................................... 20 3 13 0.08 1 0 1 0 0 0 0
...................................................................................................................................................AATCTTTGGGTTCTGGGGGG.................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0
......................................................................................................................................................CTTTGGGTTCTCGGGGACG.................................................................................. 19 3 14 0.07 1 0 0 1 0 0 0
........................................................................................................................................................TTGGGTTCTTGGGGCCGTCT............................................................................... 20 3 14 0.07 1 0 0 1 0 0 0
......................................................................................................................................................CTTTGGGTTCTTTGGGGCGA................................................................................. 20 3 18 0.06 1 0 0 1 0 0 0
....................................................................................................................................................GTCTTTGGGTTCTGGGGGCA................................................................................... 20 3 19 0.05 1 0 1 0 0 0 0
........................................................................................................................................................TTGGGTTCTGGGGGCCT.................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0
.....................................................................................................................................................TCTTTGGGTTCTGGGGGGAA.................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................CTTTGGGTTCTGGGGGACG.................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0
.......................................................................................................................................................TTTGGGTTCTTGGGGGGA.................................................................................. 18 2 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CCTAGTCTCATGGCTACTAGTCCAATCGCAGTTGAGTGTCCTACGGCTACCACTCACGAAAAGCGAAATCAGGAAACAAAGTCCCACGACAGAGGGGAGACCAAGCTCCAAGCTCCTACTTCCTTCTTTAAGCTAACGCACAGGACAGTAGAAACCCAAGAACCCCGGTTCATCAACCGTAAAAGATCGACGGCGCACAACATTTTAAGATCGATCTCAATAAAAATCAGAGGATCAAAAAAGGAAAATAA
**************************************************(((((.....)))))..((((.(((((...))))).)))).........((((((.((((((((((((((((((.......((....))..)))).)))))))))))..))).)))))).((((((((......)))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V055
head
 V106
head
 V039
embryo
...................................................................................................................................................................................................................................AAGAGGATCAAAACAGGAAAATA. 23 2 1 1.00 1 0 1 0 0 0
............................................................................................................................................GAGGACAGTAGAAACCCGAGC.......................................................................................... 21 3 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................................................CCAATCAGAGGATCAAAAAA......... 20 2 2 0.50 1 1 0 0 0 0
.............................................................................................GGGGATACCAAGCTCCAACA.......................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0
.......................................................ACCAAAAGAGAAAGCAGGAAACA............................................................................................................................................................................. 23 3 3 0.33 1 1 0 0 0 0
.................................................CCACGCACGAAAAGAGAACT...................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0
....................................................................................................................................................................................................................................AGAGGATCAAAAAGCGAAAAGAA 23 3 6 0.17 1 0 1 0 0 0
............................................................CAGCGAAAGCAGGAAACTAAG.......................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0
.............................................................................................................................................................................................................................AAAAATCAGAGGCACAAAA........... 19 2 7 0.14 1 1 0 0 0 0
.............................................................................................................................................................................................................................AAAAAACAGAGGACCAAAAAA......... 21 2 9 0.11 1 1 0 0 0 0
.............................................................................................................................................................................................AAGGGGCACAACATTTTA............................................ 18 2 9 0.11 1 0 0 0 1 0
.................................................CCACTAACGAACAGCGAAAA...................................................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0
................................................ACCACCCACGAAAAGCAA......................................................................................................................................................................................... 18 2 14 0.07 1 1 0 0 0 0
....................................................................................................................................................................................................................................CGAAGATCAAAAAAGGAAA.... 19 2 17 0.06 1 0 0 0 0 1
...........................................CCGCAACCACTCACGAAAAA............................................................................................................................................................................................ 20 3 18 0.06 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:17263423-17263673 + dan_2075 GGATCAGAGTACCGATGATCAGGTTAGCGTCAACTCACAGGATGCCGATGGTGAGTGCT-T--TTCGCTT-TAGTC----------------------------------------------CTT-------------------T---GTTTCAGGGTGCTGTCTCCCCTCTGGTTCGAGGTTCGAGGATGAAGGAAGAAA--------TTCGATTGCGTGTCCTGTCATCTTTGGGTTCTTG-GGGCCAAGTA-----------------------------------------------------GTTGGCATTTTCTAG---------------------CTGCCGCGTG--TTGTAAAATTC-------TAGCTAGAGTTATTTTTAGT---------------------------CT------------C-C------------------TA--GTTTTTT-CCTTTT-----------------ATT
droBip1 scf7180000396735:531254-531467 + GGACCAGAGTACCGATGACCAGGCTAGCGTCAACTCACAGGATGCCGATGGTGAGTGG-----------------------------------------------------CTTTCAGAGTCCGGGG------GCC--------------------------------------------------TTC----CA-AGAAAT-------ATCGATTGCGTGTCCTGTCATCTTTTTGTTCTTCTGGC-CAACTA-----------------------------------------------------GTTTGCATTTTCTAG---------------------CTGCTGCGTG--TTGTAAAATTC-------TTGCTAGAGTTATTTATAGT---------------------------TT----------TCC----------------C----ATATTTTTTCGCCTTTT-----------------ATT
droKik1 scf7180000302682:1563543-1563756 + GGAGCAGAGCACCGATGACCAGCTGAGCGTCAACTCACAAGAAGCCGATGGTGAGTGGAGT--TG-GTAT-TATTAACTTCA---------------GGAGTTCCTTTAGTC----------CCT-----------------------------------------------------------------------TG-TT--------TTTGTTGGCATGTCCTGTCAACTTCTTTT---C--ATCA---------------------------------------------TATTTTTTCTTCG-TTTTACATTT----G---------------------CCACTGCGTG--TTGTAAAATTC-------TTGGGTCAGATATTTTTAGT---------------------------TT----------T---C-------------------C--------T-TCCCGT-----------------ACT
droFic1 scf7180000453948:643810-644089 + AGATAATAGTACCGATGACCAGCTGAGCGTGAACTCACAAGATGCCGATGGTAAGTGGAGT--TTTAAAG-TCTTG----CGAGTTCTT------CAACTGCCTGCTTAAACTGTCGGAATCCCATG------GTTTG------G----------------------------------------TGCC----CAAAGTTA--------TTCGATGGCGTGTCCTGTCAAGTTTTTCC---T--GCCTCAACTG--------------C--CATCCTCGTGACTTTTT-----TCCAGCTCTCTAG-CTTTGCATTTCTT-GCCT------------------CTGCTGCGTG--TTGCAAAATAC-------TTGCCTCGGATATTTTTAC---------------------------TCT----------TTT----------------C----ACG-------------TACTTTT-----------ACT
droEle1 scf7180000491107:1198817-1199102 + AGACATAAGTACCGATGACCAACTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTCGTTT-TATTT----GA---------------ACTGCTTCTTTAAGCCATCGGAATGCGATG------GTTTT------T----------------------------------------CATT----CAAAGATTT-------TCCGATTGCGTGTCCTGTCAACTTTTTCT---T--GGCTTAAATG--------------C--CAGAC--TGTT-TTTTC-----TGCAGCTCCTTCG-TTTTGCATTTGCT-GCATTTGCCGCTGGT-----ACGAGGTGCGTG--CTGTAGAATTC-------TTGCCAGGGATATTTTCACT---------------------------TC------------C-C-------------------CTG-------------CACTTTTTCTGTGCTT-----
droRho1 scf7180000777200:78521-78740 - AGATATAAGTACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTTATTT-TATTT----GA---------------ACGGCT-----------------------G------GTT--------TTTTATTT--------------------------------A-ATC----CAAAGACA--------TTCGATTGCGTGTCCTGTCAACTTTTTCT---T--GGCCCAACTG--------------CC-CCGAC----------------------------CT-TTTTGCATTTTC-------------------------CGCTGCGTG--TTGTAGAATTC-------TTGCCTGGGATATTTTTAC---------------------------TTT----------TTC----------------C----C------------CTGC-----------------ACT
droBia1 scf7180000301506:805531-805797 + GGATCACAGTACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTTATGT-TGTTT----CT---------------GCTGCTTCTTAAGTCTACAGGAATCCCAAGT-----TGTTT------TTGC----------------------------TTACGTTCTCTAC----CCAAGTTA--------TTCCATTGCGTGTCCTGTCAACTTTTTCT---T--GGCTTAACTG--------------C--C--------------------TTAAATCTGCTTCGTTTTTGCATTTTCC-GCTTTTG---------------GCGCTGCGTG--TTGGAAAATTC-------TTGCCTGGGAGATTGGTAC---------------------------TTT----------TTT----------------C----ACG-------------T-----------------ACT
droTak1 scf7180000415870:357139-357413 + GGATCAAAGTACCGATGACCAACTGAGCGTCAACTCACAAGATGCCGATGGTAAGTGGAGT--TTTATTT-TATTT----GA---------------ACTGCTTCATAAAGCTTCCGGAATCCAATG------GGTTT------T----------------------------------------TTTC----CAAAGATA--------TTCGATTGCGTGTCCTGTCAACTTTTCCT---T--GGCTCAACTG--------------C--CAGTC--GTTT-TTTTTTACCTAAAATCTCCTTAG-CATTGCATTTGCT-T---------------------CTGCTGCGTG--TTGAAAAATTC-------TTGCCTAGGATTCTG----------TGTAC----------------TTT----------TTT----------------C----ACG-------------TACTTTTTCCT-------AGT
droEug1 scf7180000409209:285974-286266 + CGATCAAAGTACCGATGACCAACTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGCAGT--TTTATTTCTGTTC----CT---------------TTCCCCTTTTTCAACTTCAGGAATGTTTTG-TACTGG----------------------------------------------------CTC----TAAAGATA--------TTCGATTGCGTGTTCTGTCAACTTTTTCT---T--GGCTTAACTG--------------C--CAGGC----------------TTAAATCTCCTTCG-TTTTACATTTTCC-ACTGCTGCTC---CTCCTGCCTCTGCTGCGTG--TTGCAAAATTC-------TTGCCTGGGATATTTTTACTTTTTGTGTACGTTTCTGTTTCTGTTTTTT----------TTTCA-----------------------------------------------------ACT
dm3 chr2R:5892404-5892711 - GGATCAAAGCACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGTGTTCTACTT-TATTC----GA---------------GCAGCTTCTTTAAGCTGCCGGAATCCGTTG------TGCTCCTCTT-C----------------------TTTTTTTTTCTATTTTCGTTTA----CAAAGCAA--------TTCGATTGCGTGTCCTGTCAACTTTTTCT---T--GGCTTAACTG--------------C--CAGCC----------------CAAAGTCCTCTACA-TTTTGCATTTTCT-G---------------------CTGCTGCGTG--TTGGAAAATTC-------CTGCCGGGGATAGTTAAAAAG---------------------------------------TGCAACTACATACACATACACATA--CT--------------TTTTTCAGAGCTCTTTTC
droSim2 2r:6668731-6669017 - dsi_12035 GGATCAAAGCACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTTACTT-TATTC----GA---------------GCAGCTTCTTTAAGCTGCCGGAATCCGGTG------TGCTCCTCTTTC----------------------TTTTTTGTGCTATTTTCGTTTC----CAAAGCAA--------TTCGATTGCGTGTCCTGTCAACTTTTTCT---T--GGCTTAACTG--------------C--CAGCC----------------GTAAGTCCTCTTCG-TTTTGCATTTTCT-G---------------------CTGCTGCGTG--TTGGAAAATTC-------CTGCCGGGGATAGTTGCAC---------------------------TTT----------TTC----------------C----ACA-------------TACTTTTCCAGAGCTC-----
droSec2 scaffold_1:3506309-3506591 - GGATCAAAGCACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTTACTT-TATTC----GA---------------GCAGCTTCTTTAAGCTGCCGGAATCCGGTG------TGCTCCTCTTTT--------------------------TTTTTCTATTTTCGTTTC----CAAAACAA--------TTCGATTGCGTGTCCTGTCAACTTTTTCT---T--GGCTTAACTG--------------C--CAGCC----------------CAAAGTCCTCTTCG-TTTTGCATTTTCT-G---------------------CTGCTGCGTG--TTGGAAAATTC-------CTGCCGGGGATAGTTGCAC---------------------------TTT----------TTC----------------C----ACA-------------TACTTTTCCAGAGCTC-----
droYak3 2L:18521063-18521354 - GGATCAAAGCACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTTACTT-TATTA----CAACCGCTTCTA--CGAACAGCTTCTTTAAGCTGCCGGAATCCGGTG------TGTTT------TTGTATTT--------------------------------ATTTC----CATAGCAA--------TTCGATTGCGTGTCCTGTCAACTTCTTCT---T--GGCTTAACTG--------------C--CAGCC----------------CTAAGTCTGGTTCG-TTTTGCATTTTCT-G---------------------CTGCTGCGTG--TTGCAAAATTC-------CTGCCGGGGAAAGTTGCAC---------------------------TTTTATTTTTACTTTG----------------C----ACT-------------TACTTTTTCAGTAC-------
droEre2 scaffold_4929:8476644-8476941 + GGATCAAAGCACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTGAGTGGCGT--TTTACTT-TATTC----GAATCGC---TATTCGAACAGCTTCTTCAAGCTGCCGGAATCCGGTG------TGCTTTTCTTTTTGCATTT--------------------------------ATTTC----CATAGCAA--------CTCGATTCCGTGTCCTGTCAAGTTTTTCT---T--GGCTTAACTG--------------C--CAGCC----------------CTAAGTCTTGTTGG-TTTTGCATTTGCT-GCTGCTGCTG------------CTGCTGCGTG--TTGCAACATTC-------CTGCCGGCTAAAGTTGCAC---------------------------TTT----------TTT----------------C----ACT-------------CACTTTTTTTGAATAG-----
dp5 3:6108737-6108900 - GGATCACAGTCAGGATGATCAGCAGAGCCTCAACTCCCAGGATGGAGAAGGTGAGTGGGG------------------------------------------------------------------------------------------------------------------------------------------CCC--------TTCGATGGCGTGTCCTGTCATCCATTTCT---T--TGCGTGTGCGTCGGCATTCCTTT----------------------------------------------------------------------------GGGGGGGGGC--GTGCAACATTC-------TTTCTAGGTTTATTTTTAGT---------------------------TT------------C-C-----------------------------------------------------ATT
droPer2 scaffold_2:6312056-6312218 - GGATCACAGTCAGGATGATCAGCAGAGCATCAACTCCCAGGATGGAGAAGGTGAGTGGGG------------------------------------------------------------------------------------------------------------------------------------------CCC--------TTCGATGGCGTGTCCTGTCATCCTTTTCT---T--TGCGTGTGCGTCGGCATTCCTTT-----------------------------------------------------------------------------GGGGGGGGC--TTGCAACATTC-------TTTCTAGGTTTATTTTTAGT---------------------------TT------------C-C-----------------------------------------------------ATT
droWil2 scf2_1100000004513:5317145-5317395 - GGAACATAATACCGATGATCAGCTGAGCATTAACTCACAGGATGGTGATGGTGAGTCCTA----------------------------------CTAACTAGTTTAGTAAAT------------------------------------------------------------------------------GAGGGTAGAAAACTTGTCTTAAAATTGCGTGTCCTGTCATTGGATTTT---T--TGCAACTATTTCTGGATTTCTTTACGTCAATT----------------TTATGTTTCTTTCT-T-------------T---------------------TTGCTGCGTGTGTTGCAGTTTTTCATTTTATTTTTAGTAATAGTTGTTT--TTTGTGTGTGCTTCG----------TTT----------TT-----------------------------------CTAT-----------------ATT
droVir3 scaffold_12875:407362-407417 - CGATAATGGGGCCGATGATAGTCAGAGCATTAATTCACAAGATGGCGACGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:5084521-5084576 + CGATAACACGGCCGATGATAATCAAAGCGTCAACTCACAGGAAGGCGATGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:10560764-10560819 + TGATAACGGGGCCGATGATCAGATAAGCCTCAACTCACAAGATGGCGACGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GGATCAGAGTACCGATGATCAGGTTAGCGTCAACTCACAGGATGCCGATGGTGAGTGCT-T--TTCGCTT-TAGTC----------------------------------------------CTT-------------------T---GTTTCAGGGTGCTGTCTCCCCTCTGGTTCGAGGTTCGAGGATGAAGGAAGAAA--------TTCGATTGCGTGTCCTGTCATCTTTGGGTTCTTG-GGGCCAAGTA-----------------------------------------------------GTTGGCATTTTCTAG---------------------CTGCCGCGTG--TTGTAAAATTC-------TAGCTAGAGTTATTTTTAGT---------------------------CT------------C-C------------------TA--GTTTTTT-CCTTTT-----------------ATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........GTACCGATGATCAGGTTAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003010110
.............GATGATCAGGTTAGCGTCAACTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
........GTACCGATGATCAGGTTAGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
...................CAGGTTAGCGTCAACTCACAGGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
..........ACCGATGATCAGGTTAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..ATCAGAGTACCGATGATCAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
....CAGAGTACCGATGATCAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
..ATCAGAGTACCGATGATCAGGTTAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................TCTTTGGGTTCTTG-GGGGA....................................................................................................................................................................................................................................................19120.253100011
......................................................................................................................................................................................................................................CTTTGGGTTCTTG-GGGAG....................................................................................................................................................................................................................................................18140.142000020
.......................................................................................................................................................................................................................................TTTGGGTTCTTG-GGGCCTT..................................................................................................................................................................................................................................................1980.131000100
droBip1
GGACCAGAGTACCGATGACCAGGCTAGCGTCAACTCACAGGATGCCGATGGTGAGTGG-----------------------------------------------------CTTTCAGAGTCCGGGG------GCC--------------------------------------------------TTC----CA-AGAAAT-------ATCGATTGCGTGTCCTGTCATCTTTTTGTTCTTCTGGC-CAACTA-----------------------------------------------------GTTTGCATTTTCTAG---------------------CTGCTGCGTG--TTGTAAAATTC-------TTGCTAGAGTTATTTATAGT---------------------------TT----------TCC----------------C----ATATTTTTTCGCCTTTT-----------------ATTSizeHit CountTotal NormTotal
No Reads
droKik1
GGAGCAGAGCACCGATGACCAGCTGAGCGTCAACTCACAAGAAGCCGATGGTGAGTGGAGT--TG-GTAT-TATTAACTTCA---------------GGAGTTCCTTTAGTC----------CCT-----------------------------------------------------------------------TG-TT--------TTTGTTGGCATGTCCTGTCAACTTCTTTT---C--ATCA---------------------------------------------TATTTTTTCTTCG-TTTTACATTT----G---------------------CCACTGCGTG--TTGTAAAATTC-------TTGGGTCAGATATTTTTAGT---------------------------TT----------T---C-------------------C--------T-TCCCGT-----------------ACTSizeHit CountTotal NormTotal
No Reads
droFic1
AGATAATAGTACCGATGACCAGCTGAGCGTGAACTCACAAGATGCCGATGGTAAGTGGAGT--TTTAAAG-TCTTG----CGAGTTCTT------CAACTGCCTGCTTAAACTGTCGGAATCCCATG------GTTTG------G----------------------------------------TGCC----CAAAGTTA--------TTCGATGGCGTGTCCTGTCAAGTTTTTCC---T--GCCTCAACTG--------------C--CATCCTCGTGACTTTTT-----TCCAGCTCTCTAG-CTTTGCATTTCTT-GCCT------------------CTGCTGCGTG--TTGCAAAATAC-------TTGCCTCGGATATTTTTAC---------------------------TCT----------TTT----------------C----ACG-------------TACTTTT-----------ACTSizeHit CountTotal NormTotal
No Reads
droEle1
AGACATAAGTACCGATGACCAACTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTCGTTT-TATTT----GA---------------ACTGCTTCTTTAAGCCATCGGAATGCGATG------GTTTT------T----------------------------------------CATT----CAAAGATTT-------TCCGATTGCGTGTCCTGTCAACTTTTTCT---T--GGCTTAAATG--------------C--CAGAC--TGTT-TTTTC-----TGCAGCTCCTTCG-TTTTGCATTTGCT-GCATTTGCCGCTGGT-----ACGAGGTGCGTG--CTGTAGAATTC-------TTGCCAGGGATATTTTCACT---------------------------TC------------C-C-------------------CTG-------------CACTTTTTCTGTGCTT-----SizeHit CountTotal NormTotal
No Reads
droRho1
AGATATAAGTACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTTATTT-TATTT----GA---------------ACGGCT-----------------------G------GTT--------TTTTATTT--------------------------------A-ATC----CAAAGACA--------TTCGATTGCGTGTCCTGTCAACTTTTTCT---T--GGCCCAACTG--------------CC-CCGAC----------------------------CT-TTTTGCATTTTC-------------------------CGCTGCGTG--TTGTAGAATTC-------TTGCCTGGGATATTTTTAC---------------------------TTT----------TTC----------------C----C------------CTGC-----------------ACTSizeHit CountTotal NormTotal
No Reads
droBia1
GGATCACAGTACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTTATGT-TGTTT----CT---------------GCTGCTTCTTAAGTCTACAGGAATCCCAAGT-----TGTTT------TTGC----------------------------TTACGTTCTCTAC----CCAAGTTA--------TTCCATTGCGTGTCCTGTCAACTTTTTCT---T--GGCTTAACTG--------------C--C--------------------TTAAATCTGCTTCGTTTTTGCATTTTCC-GCTTTTG---------------GCGCTGCGTG--TTGGAAAATTC-------TTGCCTGGGAGATTGGTAC---------------------------TTT----------TTT----------------C----ACG-------------T-----------------ACTSizeHit CountTotal NormTotal
No Reads
droTak1
GGATCAAAGTACCGATGACCAACTGAGCGTCAACTCACAAGATGCCGATGGTAAGTGGAGT--TTTATTT-TATTT----GA---------------ACTGCTTCATAAAGCTTCCGGAATCCAATG------GGTTT------T----------------------------------------TTTC----CAAAGATA--------TTCGATTGCGTGTCCTGTCAACTTTTCCT---T--GGCTCAACTG--------------C--CAGTC--GTTT-TTTTTTACCTAAAATCTCCTTAG-CATTGCATTTGCT-T---------------------CTGCTGCGTG--TTGAAAAATTC-------TTGCCTAGGATTCTG----------TGTAC----------------TTT----------TTT----------------C----ACG-------------TACTTTTTCCT-------AGTSizeHit CountTotal NormTotal
No Reads
droEug1
CGATCAAAGTACCGATGACCAACTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGCAGT--TTTATTTCTGTTC----CT---------------TTCCCCTTTTTCAACTTCAGGAATGTTTTG-TACTGG----------------------------------------------------CTC----TAAAGATA--------TTCGATTGCGTGTTCTGTCAACTTTTTCT---T--GGCTTAACTG--------------C--CAGGC----------------TTAAATCTCCTTCG-TTTTACATTTTCC-ACTGCTGCTC---CTCCTGCCTCTGCTGCGTG--TTGCAAAATTC-------TTGCCTGGGATATTTTTACTTTTTGTGTACGTTTCTGTTTCTGTTTTTT----------TTTCA-----------------------------------------------------ACTSizeHit CountTotal NormTotal
No Reads
dm3
GGATCAAAGCACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGTGTTCTACTT-TATTC----GA---------------GCAGCTTCTTTAAGCTGCCGGAATCCGTTG------TGCTCCTCTT-C----------------------TTTTTTTTTCTATTTTCGTTTA----CAAAGCAA--------TTCGATTGCGTGTCCTGTCAACTTTTTCT---T--GGCTTAACTG--------------C--CAGCC----------------CAAAGTCCTCTACA-TTTTGCATTTTCT-G---------------------CTGCTGCGTG--TTGGAAAATTC-------CTGCCGGGGATAGTTAAAAAG---------------------------------------TGCAACTACATACACATACACATA--CT--------------TTTTTCAGAGCTCTTTTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................TGCTGCGTG--TTGGAAAATTC-------CTGCCGGG................................................................................................................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CTGAGCGTCAACTCACAGGATGCCGATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GATGACCAGCTGAGCGTCAACTCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000010000000
................................ACTCACAGGATGCCGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000
..............ATGACCAGCTGAGCGTCAACTCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--CT--------------TTTTTCAGAGCTCTTTTC2212.0020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TCT-G---------------------CTGCTGCGTG--TTGGAAAATTC-------C.......................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.............GATGACCAGCTGAGCGTCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCACCGATGACCAGCTGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGCGTCAACTCACAGGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AGCACCGATGACCAGCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................AACTCACAGGATGCCGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............CGATGACCAGCTGAGCGTCAACTCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GACCAGCTGAGCGTCAACTCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....CAAAGCACCGATGACCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AACTCACAGGATGCCGATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CTCACAGGATGCCGATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTTGCATTTTCT-G---------------------CTGCTGCGTG--TTG.......................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........CCGATGACCAGCTGAGCGTCAACTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CGATGGTAAGTGGAGTGTTCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTGCATTTTCT-G---------------------CTGCTGCGT.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................ACTG--------------C--CAGCC----------------CAAAGTCCTCTACA-T.........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGCGTCAACTCACAGGATGCCGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ACCAGCTGAGCGTCAACTCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............GATGACCAGCTGAGCGTCAACTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....CAAAGCACCGATGACCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............ATGACCAGCTGAGCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GATGACCAGCTGAGCGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................TTCTACTT-TATTC----GA---------------GCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CAACTCACAGGATGCCGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.............................................CGATGGTAAGTGGAGTGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CGATGACCAGCTGAGCGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AAGCACCGATGACCAGCTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................CCTCTT-C----------------------TTTTTTTTTCTATTTTCG....................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CGTCAACTCACAGGATGCCGATGCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GTGGAGTGTTCTACTT-TATTC----GA---------------GCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................T-G---------------------CTGCTGCGTG--TTGGAAAATTC-------CTG.....................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............ATGACCAGCTGAGCGTCAACTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TGCCGATGGTAAGTGGAGTGTTCTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTAAGTGGAGTGTTCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
droSim2
GGATCAAAGCACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTTACTT-TATTC----GA---------------GCAGCTTCTTTAAGCTGCCGGAATCCGGTG------TGCTCCTCTTTC----------------------TTTTTTGTGCTATTTTCGTTTC----CAAAGCAA--------TTCGATTGCGTGTCCTGTCAACTTTTTCT---T--GGCTTAACTG--------------C--CAGCC----------------GTAAGTCCTCTTCG-TTTTGCATTTTCT-G---------------------CTGCTGCGTG--TTGGAAAATTC-------CTGCCGGGGATAGTTGCAC---------------------------TTT----------TTC----------------C----ACA-------------TACTTTTCCAGAGCTC-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................TTCTTTAAGCTGCCGGAATCCGGTG------........................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.......AGCACCGATGACCAGCTGAGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
droSec2
GGATCAAAGCACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTTACTT-TATTC----GA---------------GCAGCTTCTTTAAGCTGCCGGAATCCGGTG------TGCTCCTCTTTT--------------------------TTTTTCTATTTTCGTTTC----CAAAACAA--------TTCGATTGCGTGTCCTGTCAACTTTTTCT---T--GGCTTAACTG--------------C--CAGCC----------------CAAAGTCCTCTTCG-TTTTGCATTTTCT-G---------------------CTGCTGCGTG--TTGGAAAATTC-------CTGCCGGGGATAGTTGCAC---------------------------TTT----------TTC----------------C----ACA-------------TACTTTTCCAGAGCTC-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................CAGCTGAGCGTCAACTCACAGGATGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
.............GATGACCAGCTGAGCGTCAACTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
droYak3
GGATCAAAGCACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTAAGTGGAGT--TTTACTT-TATTA----CAACCGCTTCTA--CGAACAGCTTCTTTAAGCTGCCGGAATCCGGTG------TGTTT------TTGTATTT--------------------------------ATTTC----CATAGCAA--------TTCGATTGCGTGTCCTGTCAACTTCTTCT---T--GGCTTAACTG--------------C--CAGCC----------------CTAAGTCTGGTTCG-TTTTGCATTTTCT-G---------------------CTGCTGCGTG--TTGCAAAATTC-------CTGCCGGGGAAAGTTGCAC---------------------------TTTTATTTTTACTTTG----------------C----ACT-------------TACTTTTTCAGTAC-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................AGCTGAGCGTCAACTCACAGGATGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...................CAGCTGAGCGTCAACTCACAGGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.........................................................................................................................................................................................................................................................................................................................ATTTTCT-G---------------------CTGCTGCGTG--TTG.......................................................................................................................................2111.00100000010000
.............GATGACCAGCTGAGCGTCAACTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEre2
GGATCAAAGCACCGATGACCAGCTGAGCGTCAACTCACAGGATGCCGATGGTGAGTGGCGT--TTTACTT-TATTC----GAATCGC---TATTCGAACAGCTTCTTCAAGCTGCCGGAATCCGGTG------TGCTTTTCTTTTTGCATTT--------------------------------ATTTC----CATAGCAA--------CTCGATTCCGTGTCCTGTCAAGTTTTTCT---T--GGCTTAACTG--------------C--CAGCC----------------CTAAGTCTTGTTGG-TTTTGCATTTGCT-GCTGCTGCTG------------CTGCTGCGTG--TTGCAACATTC-------CTGCCGGCTAAAGTTGCAC---------------------------TTT----------TTT----------------C----ACT-------------CACTTTTTTTGAATAG-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............GATGACCAGCTGAGCGTCAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0021000100
.............GATGACCAGCTGAGCGTCAACTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
............................GTCAACTCACAGGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
....CAAAGCACCGATGACCAGCTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
................................................................TTACTT-TATTC----GAATCGC---TATTC..............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.......AGCACCGATGACCAGCTGAGCGTCAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000010
dp5
GGATCACAGTCAGGATGATCAGCAGAGCCTCAACTCCCAGGATGGAGAAGGTGAGTGGGG------------------------------------------------------------------------------------------------------------------------------------------CCC--------TTCGATGGCGTGTCCTGTCATCCATTTCT---T--TGCGTGTGCGTCGGCATTCCTTT----------------------------------------------------------------------------GGGGGGGGGC--GTGCAACATTC-------TTTCTAGGTTTATTTTTAGT---------------------------TT------------C-C-----------------------------------------------------ATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..ATCACAGTCAGGATGATCAGCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
................GATCAGCAGAGCCTCAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............ATGATCAGCAGAGCCTCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000000
.GATCACAGTCAGGATGATCAGCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.................ATCAGCAGAGCCTCAACTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........GTCAGGATGATCAGCAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
............................CTCAACTCCCAGGATGGAGAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
.........................AGCCTCAACTCCCAGGATGGAGAAGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000010000
..........................GCCTCAACTCCCAGGATGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
GGATCACAGTCAGGATGATCAGCAGAGCATCAACTCCCAGGATGGAGAAGGTGAGTGGGG------------------------------------------------------------------------------------------------------------------------------------------CCC--------TTCGATGGCGTGTCCTGTCATCCTTTTCT---T--TGCGTGTGCGTCGGCATTCCTTT-----------------------------------------------------------------------------GGGGGGGGC--TTGCAACATTC-------TTTCTAGGTTTATTTTTAGT---------------------------TT------------C-C-----------------------------------------------------ATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GGAACATAATACCGATGATCAGCTGAGCATTAACTCACAGGATGGTGATGGTGAGTCCTA----------------------------------CTAACTAGTTTAGTAAAT------------------------------------------------------------------------------GAGGGTAGAAAACTTGTCTTAAAATTGCGTGTCCTGTCATTGGATTTT---T--TGCAACTATTTCTGGATTTCTTTACGTCAATT----------------TTATGTTTCTTTCT-T-------------T---------------------TTGCTGCGTGTGTTGCAGTTTTTCATTTTATTTTTAGTAATAGTTGTTT--TTTGTGTGTGCTTCG----------TTT----------TT-----------------------------------CTAT-----------------ATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......AATACCGATGATCAGCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.....ATAATACCGATGATCAGCTGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..AACATAATACCGATGATCAGCTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...............................AACTCACAGGATGGTGATGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100010
droVir3
CGATAATGGGGCCGATGATAGTCAGAGCATTAATTCACAAGATGGCGACGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............CGATGATAGTCAGAGCATTAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.GATAATGGGGCCGATGATAGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................TAATTCACAAGATGGCGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.........GGCCGATGATAGTCAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
CGATAACACGGCCGATGATAATCAAAGCGTCAACTCACAGGAAGGCGATGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................GTCAACTCACAGGAAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000200
droGri2
TGATAACGGGGCCGATGATCAGATAAGCCTCAACTCACAAGATGGCGACGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:37 AM