ID:

dan_2054

 Coordinate:

scaffold_13266:16416840-16416990 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.4 -14.3 -14.2

Flybase annnotation

CDS [Dana\GF13679-cds]; exon [dana_GLEANR_13686:3]; intron [Dana\GF13679-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCAAGCCGAAGCCGAATCCGAGACCGACAGAATGGCCAATTTCGACGATGTGAGTGACCAATTGTGAGGCGATTGCAAGTGCACACCAAACCAGACAAAAAATATAAAAAATAATATAAAAAAAAACAGATGTGTAACGATTATTAACTTGCACAAACACACAACAGATAAACATACACATTTATATGAAAAAGAAGGAAAAAAAGAAAAAATATGTACCGTGCACGTAACAAACATTAAGCGCCTTATT
**************************************************.((.(((..((.((((((.....)))))).))..))))).......................................(((((((((....(((((...(((..........)))..)))))...))))))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V105
male body		 V055
head
 V039
embryo
.............................AGAATGGCCAATTTCGACGAT......................................................................................................................................................................................................... 21 0 1 3.00 3 0 0 3 0 0 0
..........AGCCGAATGCGAGACCGACAGAA.......................................................................................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................AAAAAGAAGGACAAAAAGAAAA........................................ 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................ATGAAAGAGTAGGAAAAAAAGAAG......................................... 24 3 1 1.00 1 0 1 0 0 0 0
......................GACCGACAGAATGGCCAAT.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................GAAAAACAAGGAAAAAAAGA........................................... 20 1 1 1.00 1 1 0 0 0 0 0
.........................CGACAGAATGGCCAATTTC............................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1
.........AAGCCGAATCCGAGACCGACA............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0
..............................................................................................................................................................................................AAGAGAAGGAAAAACAGAAAAAATA.................................... 25 2 1 1.00 1 0 0 0 1 0 0
................................................................................................................................................................................ACACATTTTTATGAAAAAGAA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................GGCGATTGCAAGTGCACACCA.................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0
....................GAGACCGACAGAATGGCC..................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..CAAGCCGAAGCCGAATCCGAGACC................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................AAAAGAAGGAAAAAAAGAAA......................................... 20 0 1 1.00 1 1 0 0 0 0 0
..............GAATCCGAGACCGACAGAAT......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................TATAAAAAATAACGGATGTGT................................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................................................................................................................ATGAAATAGAAGGAAAGACAGAAAAAA...................................... 27 3 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................AAGAGAAAGAAGGAAAAAAAGAAA......................................... 24 2 2 0.50 1 0 0 0 1 0 0
..............................................................................................................................................................................................AAAAGAAGGAAAAAAAGAA.......................................... 19 0 2 0.50 1 1 0 0 0 0 0
.....TCCGAAGCCGAATCCGAGAC.................................................................................................................................................................................................................................. 20 1 2 0.50 1 0 0 0 0 0 1
...........................................................................................................................................................................................TGAAGAAGACGGAAAAAAAGA........................................... 21 2 2 0.50 1 1 0 0 0 0 0
................................................................................................................................................................................ACACATTTTTATGAAAAAAA....................................................... 20 2 20 0.45 9 8 0 0 0 0 1
...........................................................................................................................................................................................AGAAAAAGAAGGCAAACAAGAAAAAA...................................... 26 3 3 0.33 1 1 0 0 0 0 0
................................................................................................................................................................................ACACATTTTTATGAAAAAAAA...................................................... 21 2 14 0.29 4 4 0 0 0 0 0
............................................................................................................................................................................................CAAAAAGAAGGAAAAAAAGAAAGA....................................... 24 2 4 0.25 1 1 0 0 0 0 0
.............................................................................................................................................................................................AAGAAGAAGGAAAAAAAGAAAAAG...................................... 24 2 4 0.25 1 0 0 0 1 0 0
.............................................................................................................................................................................................AGAAAGAAGGAACAAAAGAAAAGA...................................... 24 3 5 0.20 1 0 0 0 0 0 1
.....GCCGCAGTCGAATCCGAG.................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 1 0 0 0 0
.........................................................................TAGCAAGTGCACACCAATCA.............................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 1 0
...............................................................................................................................................................................................AGAGAAGGAAAAAAAGAAA......................................... 19 1 6 0.17 1 0 0 0 1 0 0
............................................................................................................................................................................................AAAAAAGAAGGAAAAAAAGAAAAC....................................... 24 2 6 0.17 1 1 0 0 0 0 0
.............................................................................................................................................................................................AAAAGGAAGGAAAAAAAGGAAAAAGA.................................... 26 3 6 0.17 1 0 0 1 0 0 0
..........................................................................................................................................................................................ATGAAAAAGAGGGAAAAAAA............................................. 20 1 7 0.14 1 0 1 0 0 0 0
................................................ATGTGAGGAACCAATTGTGG....................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 1 0
................................................................................................................................................................................................AAGAAGGAAGAAAAGAAAA........................................ 19 1 7 0.14 1 1 0 0 0 0 0
............................................................................................................................................................................................GAAAAAGCAGGACAAAAAGA........................................... 20 2 7 0.14 1 1 0 0 0 0 0
...........................................................................................................................................................................................GTAAAAAGAAGGAAAAAAAGAGAA........................................ 24 3 9 0.11 1 1 0 0 0 0 0
.....................................................................................................................................................................................................GGAAAAAAAGAAAAAGTAGG.................................. 20 2 10 0.10 1 1 0 0 0 0 0
..............................................................................................................................................................................................AACAGAAGGAAAAAAAGA........................................... 18 1 10 0.10 1 0 0 0 0 0 1
..............................................................................................................................................................................................AAAAGAGGGAAAAACAGAAAAA....................................... 22 2 11 0.09 1 0 0 0 0 0 1
..............................................................................................................................................................................................AAAAGACGGAAAACAAGAAAA........................................ 21 2 11 0.09 1 0 0 0 0 0 1
.................................................................................GCACACCAGACCCGACAA........................................................................................................................................................ 18 2 12 0.08 1 0 0 0 0 0 1
.............................................................................................................................................................................................ACCAAGAAGGAAAAAAGGAAAAA....................................... 23 3 13 0.08 1 1 0 0 0 0 0
............................................................................................................................................................................................GAACAAGAAGGCAAAAAAGA........................................... 20 2 13 0.08 1 1 0 0 0 0 0
...........................................................................................................................................................................................AGAACAAGAATGAAAAAAAGAAAAA....................................... 25 3 14 0.07 1 1 0 0 0 0 0
............................................................................................................................................................................................GAACAAGAAGGAAAAAAA............................................. 18 1 14 0.07 1 1 0 0 0 0 0
..................................................................................................................................................................................................GAAGGAAAAAAAGAGAAA....................................... 18 1 15 0.07 1 1 0 0 0 0 0
.............................................................................................................................................................................................AAAAAGAAGGAAAGAAACAAAAA....................................... 23 2 16 0.06 1 1 0 0 0 0 0
................................................................................................................................................................................................AAGAAGGAAGAAAAGAAA......................................... 18 1 16 0.06 1 0 1 0 0 0 0
..........................................................................................................................................................................................ATGAAAAAAAAGGAAAGAAAG............................................ 21 2 16 0.06 1 0 1 0 0 0 0
..............................................................................................................................................................................................AAAAGAAAGAAAAAAAGAAAAA....................................... 22 1 16 0.06 1 1 0 0 0 0 0
..................................................................................................................................................................................................GAAGGAAGAAAAGAAAAAA...................................... 19 1 18 0.06 1 0 0 1 0 0 0
..............................................................................................................................................................................................AAAAGAATGAAAAAAAGAA.......................................... 19 1 18 0.06 1 1 0 0 0 0 0
................................................................................................................................................................................................AAGAAGGAAAAAAAGCACAA....................................... 20 2 18 0.06 1 1 0 0 0 0 0
............................................................................................................................................................................................GAAGAAGTAGGAAAAAAAG............................................ 19 2 20 0.05 1 0 0 0 0 0 1
..............................................................................................................................................................................................AAAAGAAGGAAACAAAGA........................................... 18 1 20 0.05 1 0 0 0 0 0 1
.......................................................................................................................................................................................TATCAGAAAAAGAAGGAAAAAA.............................................. 22 2 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................AAAAAGAAGGACGAAAAGAA.......................................... 20 2 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................................AAGAAGGAAAAAAAGAGAAAAA..................................... 22 2 20 0.05 1 0 0 1 0 0 0
..............................................................................................................................................................................................GAAAGAAGGAACCAAAGAAAAA....................................... 22 3 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................AGAAGAAAAAAAAGAAAAA....................................... 19 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................AAAAGAACGAAAAAAAGAATA........................................ 21 2 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................AGAAAAAGAAGGAAAAAAGGA........................................... 21 2 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................GAAAGAGAAGGAAACAAAG............................................ 19 2 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................GAAAAAGAAGGAAGACACGAA.......................................... 21 3 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................ATAACAAAGAAGGAAAAGAAGA........................................... 22 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

AGGTTCGGCTTCGGCTTAGGCTCTGGCTGTCTTACCGGTTAAAGCTGCTACACTCACTGGTTAACACTCCGCTAACGTTCACGTGTGGTTTGGTCTGTTTTTTATATTTTTTATTATATTTTTTTTTGTCTACACATTGCTAATAATTGAACGTGTTTGTGTGTTGTCTATTTGTATGTGTAAATATACTTTTTCTTCCTTTTTTTCTTTTTTATACATGGCACGTGCATTGTTTGTAATTCGCGGAATAA
**************************************************.((.(((..((.((((((.....)))))).))..))))).......................................(((((((((....(((((...(((..........)))..)))))...))))))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V039
embryo
 V055
head
......................................................................................................................................................................................................CTTTTTTTCTTTTTTATA................................... 18 0 3 0.33 1 1 0
........................................................................................................................................................................................................................CATGGAACGTGCAATGTTG................ 19 3 14 0.07 1 0 1
......................................................................................................................................................................................................CTGTTTTTCTTTGTGATACAT................................ 21 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:16416790-16417040 + dan_2054 TCCAAGC------CGAAGCCGAATCCGAGACCGACAGAATGGCCAATTTCGACGATGTGAGTGAC--------CAATTGTGAGGCGA----TTGCAAGTGCACACCAAACCAGACAAAAAATATAAAAAATAATATAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAAA---------------------A-AACAGATGTGTAACGATTATTAACTTGCACAAACACACA-ACAGA--------------------------------TAAACATACACATTTATATGAAAAAGAAGGAAAAAA-----------------------------------------------------------------------------------------AG---A--AAAAATA-------TGTACCGTGCACGTAACAAACATTAAGCGCCTTATT---------
droBip1 scf7180000396384:521496-521715 + TCCAATC------CGAAGGCGAATCCGAAACAGACAGAATGGCCAATTTCGACGATGTGAGTGAC--------CAATG---AGGCAAT----TGCAAGTGCACGGCAAACTCGACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGAAATATATAAAA-AACAGATGTGTAACGATTATTAACTTGCACAGACATACAAACAGA--------------------------------TAAACATACACATTTATATAA---AAAATGT-----------------------------------------------------------------------------------------------------------------------ACCGTGCACGTAACGAACATTAAGCGCCTTATT---------
droKik1 scf7180000302385:922867-923118 - AGCAAGA------------TCTATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTCCAGCAGACCAATT---AGGCAATTTATTGCAAGTGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGCGAGAAAATAAAAAACAGAAAAAAGAAGAGATGTGTAACGATTATTAACTGACACACACACACAGGCACACAAAAACAGAGCCCGACAAACACCTACACAGACTGACACA---------------------------------------------------------------------------------------------------------------------CA---CACACATACG-------AAGTCCGTGCACGTAACGAACATTAAGCGCCTTATT---------
droFic1 scf7180000453948:118752-118925 - AACCAGAGCAACT------TCAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTCTCAC----AC----------------------------------------------A------A----------------------ACG--------------------------------------------------------------------------------------ACG---CACACAGGCC-------AACGCCGTGCACGTAACGAACATTAAGCGCCTTATT---------
droEle1 scf7180000491347:193771-193943 - AAGCAGAGCAGCT------CCAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACACACAC--------------------------------------------------------AC----T----A--------G---------------------------------------------------------------------------------------------AAAG---CACACAGACA-------TACGCCTTGCACGTAACGAACATTAAGCGCCTTATT---------
droRho1 scf7180000780160:1326-1489 + T------------------CCAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTTA-ACATACAC----------------------------------------------A------CA-------------------------------------------------------------------------------------------------------------AAAG---CACACAGCCA-------TACGCCGTGCACGTAACGAACATTAAGCGCCTTATT---------
droBia1 scf7180000302292:2785744-2785926 + AAGCAGAGCAACT------CCAATCCGAATCCGACAGAATGGCCAACTTCGACGATGTGAGTGTC--------CAATT---AGGAAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG----TA-------------GAA-AAAAGATGTGTAACGATTATTAACACACACTAGCAC----------------------------------------------A------CACG----CT-------------------------------------------------------------------------------------------------------CG---CACACAGACG-------AACGCCGTGCACGTAACGAACATTAAGCGCCTTACT---------
droTak1 scf7180000412807:132408-132573 - AACCAGAGCAGCT------CGAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTCACACACGCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACATAC----------GCTCGCACACGTAACGAACATTAAGCGCCTTATT---------
droEug1 scf7180000409672:5375125-5375312 - AACCAGAGCAGCT------CCAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTCTTATAC--AC----------------------------------------------A------TATG----T--------GTATG-------------------------------------------------------------------------------------------CA---CACACATATAAATATATAACGTCGTGCACGTAACGTACATTAAGCGCCTTATT---------
dm3 chr2R:3361079-3361280 - C--CCGAGCAGCTCCAATCCGAATCCGAGTCCGACAGAATGGCCAATTTTGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGCGAGAG---------------------A-AAGAGATGTGTAACGATTATTAACTTTAACTGACAC----------------------------------------------A------TATG----TTGTTAAATGTATGAACGAAA------------------------------------------------------------------------------------CA---CACACAGACG-------AACTCCGTGCACGTAACGAACATTAAGCGCCTTATT---------
droSim2 2r:4184255-4184456 - C--CCGAGCAGCTCCAATCCGAATCCGAGTCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGCGAGAG---------------------A-AAGAGATGTGTAACGATTATTAACTTTAACTGACAC----------------------------------------------A------TATG----TTGTTAAATGTATGAACGAAA------------------------------------------------------------------------------------CA---CACACAGACG-------AACTCCGTGCACGTAACGAACATTAAGCGCCTTATT---------
droSec2 scaffold_1:1018268-1018469 - C--CCGAGCAGCTCCAATCCGAATCCGAGTCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGCGAGAG---------------------A-AAGAGATGTGTAACGATTATTAACTTTAACTGACAC----------------------------------------------A------TATG----TTGTTAAATGTATGAACGAAA------------------------------------------------------------------------------------CA---CACACAGACG-------AACTCCGTGCACGTAACGAACATAAAGCGCCTTATT---------
droYak3 2L:16039604-16039803 - AACCCGAG---CT------CCAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTTTAACTGACAC----------------------------------------------ATACACATATGTATGTTATTAAATGTATGAA-----------------------------------------------------------------------------------------CG---TTCACAGATG-------AGCTCCGTGCACGTAACGAACATTAAGCGCCTTTTT---------
droEre2 scaffold_4929:19236720-19236923 + C---CGAGCAGCTCCAACCCGTATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAAAC---AGGCAATTTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTTTAACTGACACAC------------------------------------------------ACATATG----TTGTTAGATATATGTATGAA-------------------------------------------------------------------------------------CC---TACACAGACG-------AACTCCGTGCACGTAACGAACATTAAGCGCCTTATT---------
dp5 3:12383729-12383860 + T------------------CCAGTCCGAGTCCGACATAATGGCCAATTTCGACGATGTGAGTGTT--------CCAG---------------------TGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGAATA---------------------A-GAAAAATATATAACAATTATTAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAAACG-------AAAATTGTGCACGTAACAAACATTATGCCC--CATT---------
droPer2 scaffold_44:565782-565913 + T------------------CCAGTCCGAGTCCGACATAATGGCCAATTTCGACGATGTGAGTGTT--------CCAG---------------------TGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGAATA---------------------A-GAAAAATATATAACAATTATTAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAAACG-------AAAATTGTGCACGTAACAAACATTATGCCC--CATT---------
droWil2 scf2_1100000004837:1434152-1434346 + AAAAAAAA------------------AAAAAAAAAACAATAATA----------ATACAAA--------------ATA---AAACAA---------------------------------------------------------------------------------------------------------------------------AAC-TTTTTTTTTACT---------------------------------------------------------TTACCCAAATA---------------------A-ATATAATATATA-----------------T--------------------------------------------------------ATATATA----TACATATATATATATACAAATACTTATAAA----------------------------T------GATAATAATGAC---CATGTCAAGAAAATATATCCACAAACG---TATATATATA-------TATATTATATCTATTACTAA---------AA-CCTA---------
droVir3 scaffold_12823:1577861-1578131 + dvi_2999 TCCT-GC------------------ACAGCCTGATATAATGGCAAATTTCGATGATGTGAGTGTT--------GTACT---C-------------------------------------------------------------------------GATGCCAGTTGCCAGTTGCCAGTTGCCAGTTGCCAGTTGCCAGTTGCAACGGCAA---------------------AAGCAAATAAACAAA-ATTAGTT-ATGTAGTATGTGCCGCATGCAATTTAATGCGAGCACCAC---------------------A-AC----------------------------------------------------------------------------------------------------------------------------------AAC--CAAAAG------------CGACAAGGAGAGCAATAATAATAACAATAACAACAATTAT----TAACGAAC-------------------ATTTGTGCACGTAACAAACATTAAGCCTTCTATTCGTTTGATT
droMoj3 scaffold_6496:851876-852095 + A---------------------------GGCTGACATAATGGCAAATTTCGATGATGTGAGTGTT--------GCCG---------------------AG--------------------------------------------------------------------------------------------------TTG---------------------------------CAAATAAACAAATATCAGTTAATGTAGTAGATGCCGCATGCAATTTAATGCGAGCA---------------------------------CTTATAA-----------------------------------------------------------------------------------------------------------------AACAACAACAGCAAAAACAATCCCAATCACAACAAGGAGAGCAATAATAATAACAACAACAACGGTTAT----TAACGTAC-------------------ATTTGCGCACGTAACTCACATTAAGCCTT-CTTT---------
droGri2 scaffold_15245:5708180-5708453 - AAGCG-AAAACGTCGAGCCCGCAACCCAGCCTGACATAATGGCAAATTTCGACGATGTGAGTGTT--------GTATA---------------------------------------------TAATAAATAGTATATAATACATCAATGATGATGATGC----------------------------------CCAGCTGCAACTGCGAAATGTTATGTTATATTTTGTAAAGCAAATAAACTAA-ATTACT--------TATATGCCGCATGCAATTTAATGCGGGCACAAC---------------------A-AC----------------------------------------------------------------------------------------------------------------------------------------------------------------CACAACAACAACAAAAACAGTAACAACTATTAT----TAACGAAC-------------------ATTTGTGCACGTAACAAACATTAAGCCTT-CTTT---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCCAAGC------CGAAGCCGAATCCGAGACCGACAGAATGGCCAATTTCGACGATGTGAGTGAC--------CAATTGTGAGGCGA----TTGCAAGTGCACACCAAACCAGACAAAAAATATAAAAAATAATATAA--------------------------------------------------------------------------------------------------------------------------------------------------------AAAA---------------------A-AACAGATGTGTAACGATTATTAACTTGCACAAACACACA-ACAGA--------------------------------TAAACATACACATTTATATGAAAAAGAAGGAAAAAA-----------------------------------------------------------------------------------------AG---A--AAAAATA-------TGTACCGTGCACGTAACAAACATTAAGCGCCTTATT---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................AGAATGGCCAATTTCGACGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000003
............................GACCGACAGAATGGCCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...............................CGACAGAATGGCCAATTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...............AAGCCGAATCCGAGACCGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
..................................................................................GGCGA----TTGCAAGTGCACACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..........................GAGACCGACAGAATGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..CAAGC------CGAAGCCGAATCCGAGACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAGGAAAAAA-----------------------------------------------------------------------------------------AG---A--AA.........................................................2011.001010000
....................GAATCCGAGACCGACAGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAGGAAAAAA-----------------------------------------------------------------------------------------AG---A--A..........................................................1920.501010000
droBip1
TCCAATC------CGAAGGCGAATCCGAAACAGACAGAATGGCCAATTTCGACGATGTGAGTGAC--------CAATG---AGGCAAT----TGCAAGTGCACGGCAAACTCGACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGAAATATATAAAA-AACAGATGTGTAACGATTATTAACTTGCACAGACATACAAACAGA--------------------------------TAAACATACACATTTATATAA---AAAATGT-----------------------------------------------------------------------------------------------------------------------ACCGTGCACGTAACGAACATTAAGCGCCTTATT---------SizeHit CountTotal NormTotal
No Reads
droKik1
AGCAAGA------------TCTATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTCCAGCAGACCAATT---AGGCAATTTATTGCAAGTGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGAGCGAGAAAATAAAAAACAGAAAAAAGAAGAGATGTGTAACGATTATTAACTGACACACACACACAGGCACACAAAAACAGAGCCCGACAAACACCTACACAGACTGACACA---------------------------------------------------------------------------------------------------------------------CA---CACACATACG-------AAGTCCGTGCACGTAACGAACATTAAGCGCCTTATT---------SizeHit CountTotal NormTotal
No Reads
droFic1
AACCAGAGCAACT------TCAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTCTCAC----AC----------------------------------------------A------A----------------------ACG--------------------------------------------------------------------------------------ACG---CACACAGGCC-------AACGCCGTGCACGTAACGAACATTAAGCGCCTTATT---------SizeHit CountTotal NormTotal
No Reads
droEle1
AAGCAGAGCAGCT------CCAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACACACAC--------------------------------------------------------AC----T----A--------G---------------------------------------------------------------------------------------------AAAG---CACACAGACA-------TACGCCTTGCACGTAACGAACATTAAGCGCCTTATT---------SizeHit CountTotal NormTotal
No Reads
droRho1
T------------------CCAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTTA-ACATACAC----------------------------------------------A------CA-------------------------------------------------------------------------------------------------------------AAAG---CACACAGCCA-------TACGCCGTGCACGTAACGAACATTAAGCGCCTTATT---------SizeHit CountTotal NormTotal
No Reads
droBia1
AAGCAGAGCAACT------CCAATCCGAATCCGACAGAATGGCCAACTTCGACGATGTGAGTGTC--------CAATT---AGGAAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG----TA-------------GAA-AAAAGATGTGTAACGATTATTAACACACACTAGCAC----------------------------------------------A------CACG----CT-------------------------------------------------------------------------------------------------------CG---CACACAGACG-------AACGCCGTGCACGTAACGAACATTAAGCGCCTTACT---------SizeHit CountTotal NormTotal
No Reads
droTak1
AACCAGAGCAGCT------CGAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTCACACACGCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACATAC----------GCTCGCACACGTAACGAACATTAAGCGCCTTATT---------SizeHit CountTotal NormTotal
No Reads
droEug1
AACCAGAGCAGCT------CCAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTCTTATAC--AC----------------------------------------------A------TATG----T--------GTATG-------------------------------------------------------------------------------------------CA---CACACATATAAATATATAACGTCGTGCACGTAACGTACATTAAGCGCCTTATT---------SizeHit CountTotal NormTotal
No Reads
dm3
C--CCGAGCAGCTCCAATCCGAATCCGAGTCCGACAGAATGGCCAATTTTGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGCGAGAG---------------------A-AAGAGATGTGTAACGATTATTAACTTTAACTGACAC----------------------------------------------A------TATG----TTGTTAAATGTATGAACGAAA------------------------------------------------------------------------------------CA---CACACAGACG-------AACTCCGTGCACGTAACGAACATTAAGCGCCTTATT---------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................ATGGCCAATTTTGACGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000075500000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AATGGCCAATTTTGACGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GACGATGTGAGTGTC--------CAATT---A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000200000000000000000000000000
....................................GAATGGCCAATTTTGACGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTATGAACGAAA------------------------------------------------------------------------------------CA---CACACAGAC.....................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
C--CCGAGCAGCTCCAATCCGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CGAGTCCGACAGAATGGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTAACGAACATTAAGCGCC..............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.....................................................GATGTGAGTGTC--------CAATT---AGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............................................TTTGACGATGTGAGTGTC--------CAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ACGATTATTAACTTTAACTGA............................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TTTTGACGATGTGAGTGTC--------CAATT---AGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TGACGATGTGAGTGTC--------CAATT---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAA------------------------------------------------------------------------------------CA---CACACAGACG-------AACTCCGTGCA..................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................GTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G..............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCACGTAACGAACATGGG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.................TCCGAATCCGAGTCCGACAGAATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........CAGCTCCAATCCGAATCCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCTCCAATCCGAATCCGAGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAAATGTATGAACGAAA------------------------------------------------------------------------------------C..................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................AGAATGGCCAATTTTGACGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CCGAGTCCGACAGAATGGCCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATCCGAGTCCGACAGAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCAGCTCCAATCCGAATCCGAGTCCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------CA---CACACAGACG-------AACTCC.......................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------------------------------------------------CA---CACACAGACG-------AACTCCG......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------AACTCCGTGCACGTAACGAACAT......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CCGAGCAGCTCCAATCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AATGGCCAATTTTGACGATGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............CCAATCCGAATCCGAGTCCGACAGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCCGAATCCGAGTCCGACAGAATGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................A-AAGAGATGTGTAACGATTAT.........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATCCGAATCCGAGTCCGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......GCAGCTCCAATCCGAATCCGAGTCCGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCCGAGTCCGACAGAATGGCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AATTTTGACGATGTGAGTGTC--------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.......GCAGCTCCAATCCGAATCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATCCGAATCCGAGTCCGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AATCCGAATCCGAGTCCGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................ATTTTGACGATGTGAGTGTC--------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................TCCGAGTCCGACAGAATGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CACACAGACG-------AACTCCGTGCACG................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AGAGATGTGTAACGATTATTAACT....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
......................ATCCGAGTCCGACAGAATGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................G----TTGTTAAATGTATGAACGAAA------------------------------------------------------------------------------------...................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCAGCTCCAATCCGAATCCGAGTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CACACAGACG-------AACTCCG......................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
........................CCGAGTCCGACAGAATGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGCGAGAG---------------------A-AAGAGA.......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AATCCGAGTCCGACAGAATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............CCAATCCGAATCCGAGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GCGAGCGAGAG---------------------A-AAGAGA.......................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GAATGGCCAATTTTGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
C--CCGAGCAGCTCCAATCCGAATCCGAGTCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGCGAGAG---------------------A-AAGAGATGTGTAACGATTATTAACTTTAACTGACAC----------------------------------------------A------TATG----TTGTTAAATGTATGAACGAAA------------------------------------------------------------------------------------CA---CACACAGACG-------AACTCCGTGCACGTAACGAACATTAAGCGCCTTATT---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................CGAATCCGAGTCCGACAGAATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGACG-------AACTCCGTG....................................1811.00110000000000000000
............TCCAATCCGAATCCGAGTCCGACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...............AATCCGAATCCGAGTCCGACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------CA---CACACAGACG-------AACTCC.......................................1911.00101000000000000000
droSec2
C--CCGAGCAGCTCCAATCCGAATCCGAGTCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGCGAGAG---------------------A-AAGAGATGTGTAACGATTATTAACTTTAACTGACAC----------------------------------------------A------TATG----TTGTTAAATGTATGAACGAAA------------------------------------------------------------------------------------CA---CACACAGACG-------AACTCCGTGCACGTAACGAACATAAAGCGCCTTATT---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................ATGGCCAATTTCGACGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........................AGTCCGACAGAATGGCCAATTTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
......................ATCCGAGTCCGACAGAATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
....................................GAATGGCCAATTTCGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........................................................................ATT---AGGCAATTTATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAGCGAGAG---------------------A-.............................................................................................................................................................................................................................................................................2711.0010010
................ATCCGAATCCGAGTCCGACAGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
......................ATCCGAGTCCGACAGAATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...................CGAATCCGAGTCCGACAGAATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..........GCTCCAATCCGAATCCGAGTCCGACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
..................................CAGAATGGCCAATTTCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................CCGAATCCGAGTCCGACAGAATGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
droYak3
AACCCGAG---CT------CCAATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAATT---AGGCAATTTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTTTAACTGACAC----------------------------------------------ATACACATATGTATGTTATTAAATGTATGAA-----------------------------------------------------------------------------------------CG---TTCACAGATG-------AGCTCCGTGCACGTAACGAACATTAAGCGCCTTTTT---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-----------------------------------------------------------------------------------------CG---TTCACAGATG-------AGCTCCGTGCA..................................2611.00100000010000
.....GAG---CT------CCAATCCGAATCCGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
............................ATCCGACAGAATGGCCAATTTCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.....................................................................................................................................................................................................................................................................................................G---------------------A-AAAAGATGTGTAACGATTATTAACTT...................................................................................................................................................................................................................................................2811.00100000010000
...............................CGACAGAATGGCCAATTTCGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000100000
droEre2
C---CGAGCAGCTCCAACCCGTATCCGAATCCGACAGAATGGCCAATTTCGACGATGTGAGTGTC--------CAAAC---AGGCAATTTACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAGCGAGAG---------------------A-AAAAGATGTGTAACGATTATTAACTTTAACTGACACAC------------------------------------------------ACATATG----TTGTTAGATATATGTATGAA-------------------------------------------------------------------------------------CC---TACACAGACG-------AACTCCGTGCACGTAACGAACATTAAGCGCCTTATT---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................AATGGCCAATTTCGACGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.....GAGCAGCTCCAACCCGTATCCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
......................ATCCGAATCCGACAGAATGGCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...........CTCCAACCCGTATCCGAATCCGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
......................ATCCGAATCCGACAGAATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...............AACCCGTATCCGAATCCGACAGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...........................AATCCGACAGAATGGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
dp5
T------------------CCAGTCCGAGTCCGACATAATGGCCAATTTCGACGATGTGAGTGTT--------CCAG---------------------TGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGAATA---------------------A-GAAAAATATATAACAATTATTAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAAACG-------AAAATTGTGCACGTAACAAACATTATGCCC--CATT---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................GTCCGAGTCCGACATAATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
........................CCGAGTCCGACATAATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................CCGAGTCCGACATAATGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
droPer2
T------------------CCAGTCCGAGTCCGACATAATGGCCAATTTCGACGATGTGAGTGTT--------CCAG---------------------TGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGAATA---------------------A-GAAAAATATATAACAATTATTAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAAACG-------AAAATTGTGCACGTAACAAACATTATGCCC--CATT---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................GACATAATGGCCAATTTCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droWil2
AAAAAAAA------------------AAAAAAAAAACAATAATA----------ATACAAA--------------ATA---AAACAA---------------------------------------------------------------------------------------------------------------------------AAC-TTTTTTTTTACT---------------------------------------------------------TTACCCAAATA---------------------A-ATATAATATATA-----------------T--------------------------------------------------------ATATATA----TACATATATATATATACAAATACTTATAAA----------------------------T------GATAATAATGAC---CATGTCAAGAAAATATATCCACAAACG---TATATATATA-------TATATTATATCTATTACTAA---------AA-CCTA---------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TCCT-GC------------------ACAGCCTGATATAATGGCAAATTTCGATGATGTGAGTGTT--------GTACT---C-------------------------------------------------------------------------GATGCCAGTTGCCAGTTGCCAGTTGCCAGTTGCCAGTTGCCAGTTGCAACGGCAA---------------------AAGCAAATAAACAAA-ATTAGTT-ATGTAGTATGTGCCGCATGCAATTTAATGCGAGCACCAC---------------------A-AC----------------------------------------------------------------------------------------------------------------------------------AAC--CAAAAG------------CGACAAGGAGAGCAATAATAATAACAATAACAACAATTAT----TAACGAAC-------------------ATTTGTGCACGTAACAAACATTAAGCCTTCTATTCGTTTGATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................ATGGCAAATTTCGATGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000000020000000000000000000000000
................................................................................................................................................................................................................AA---------------------AAGCAAATAAACAAA-ATTAGT.............................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................A-AC----------------------------------------------------------------------------------------------------------------------------------AAC--CAAAAG------------CGACAAGGAGAGC.....................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CCAC---------------------A-AC----------------------------------------------------------------------------------------------------------------------------------AAC--CAAAAG------------CGACAAGGAGAG......................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AGTTGCAACGGCAA---------------------AAGCAA.............................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...........................................AAATTTCGATGATGTGAGTGTT--------GTACT---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000001000000000000000000000000000000000000000000000000000
........................................................GTGAGTGTT--------GTACT---C-------------------------------------------------------------------------GATGCCAGTTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATAACAATAACAACAAT.............................................................................2180.131001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TGCCAGTTGCCAGTTGCCAGT........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
droMoj3
A---------------------------GGCTGACATAATGGCAAATTTCGATGATGTGAGTGTT--------GCCG---------------------AG--------------------------------------------------------------------------------------------------TTG---------------------------------CAAATAAACAAATATCAGTTAATGTAGTAGATGCCGCATGCAATTTAATGCGAGCA---------------------------------CTTATAA-----------------------------------------------------------------------------------------------------------------AACAACAACAGCAAAAACAATCCCAATCACAACAAGGAGAGCAATAATAATAACAACAACAACGGTTAT----TAACGTAC-------------------ATTTGCGCACGTAACTCACATTAAGCCTT-CTTT---------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................GATGTGAGTGTT--------GCCG---------------------AG--------------------------------------------------------------------------------------------------T...................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
AAGCG-AAAACGTCGAGCCCGCAACCCAGCCTGACATAATGGCAAATTTCGACGATGTGAGTGTT--------GTATA---------------------------------------------TAATAAATAGTATATAATACATCAATGATGATGATGC----------------------------------CCAGCTGCAACTGCGAAATGTTATGTTATATTTTGTAAAGCAAATAAACTAA-ATTACT--------TATATGCCGCATGCAATTTAATGCGGGCACAAC---------------------A-AC----------------------------------------------------------------------------------------------------------------------------------------------------------------CACAACAACAACAAAAACAGTAACAACTATTAT----TAACGAAC-------------------ATTTGTGCACGTAACAAACATTAAGCCTT-CTTT---------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................GCAACCCAGCCTGACATAATGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110

Generated: 05/18/2015 at 03:34 AM