ID:

dan_2045

 Coordinate:

scaffold_13266:16288823-16289020 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.0 -10.7 -10.6

Flybase annnotation

CDS [Dana\GF13658-cds]; exon [dana_GLEANR_13665:3]; CDS [Dana\GF13658-cds]; exon [dana_GLEANR_13665:4]; intron [Dana\GF13658-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGCGCCATCGGATCGCTGGGCGGCGCTGGAGCGGCCAATAAGTTTGGACGGTAAGTTACTAATCAAGGCGATAAGCCCCATCGATTTCCTCGAGTGCTTCTAATCCGCTACCTAATTCGCATATCTTGAAAGCCACTAAACTCTATAGTACTTTCCGTTGCGTTAATCGTATTTTATAAATTCAATTTATATAGTTGAACCTTTAAGAAAAAACAAACAATACTAAGACGAATCATTTTACCTTCCAGAAAAGCATGTTTCCTCATTTGCGGCGCCCTGTTCACCATTGGAGCCGTGC
*************************************************************************************************************************..(((((((((..((((.......)))).)))))...((((.....))))(((((....(((((((.....)))))))....)))))................))))....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V055
head
.........................................................................................................................TATCTTGAAAGCCACTAAACTCTATAG...................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0
...............................................................................................................................................................................................................................TAAGACGAATCATTTTACCTTCCAGA................................................. 26 0 1 2.00 2 1 1 0 0
...............................................................................................................................................TATAGTACTTTCCGTTGCGTTAATCGTA............................................................................................................................... 28 0 1 2.00 2 1 1 0 0
.............................................................................................................................................................................................................................................................CTTGTTTCCTCATTTGCGGCGCCC..................... 24 1 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................................TACTAAGACGAATCATTTTACCTTCCAG.................................................. 28 0 1 1.00 1 0 1 0 0
...................................................................................................................................................................................................................................................................................CCTGTTCACCATTGGAGCCGTGC 23 0 1 1.00 1 1 0 0 0
......................................................................................................................GCATATCTTGAAAGCCACTAAACTC........................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................................................GTTTCCTCATTTGCGGCGCC...................... 20 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................................................................TTTCCTCATTTGCGGCGCCC..................... 20 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................CAATACTAAGACGAATCATTTTACC........................................................ 25 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................AGGACGAATCATTTTACCTTC..................................................... 21 1 1 1.00 1 1 0 0 0
......................................................................................TCCTCGAGTGCTTCTAATCCGCTACC.......................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0
......................................................................................................................................................................................................................................................................................GTTCACCATTGGAGCCGTGC 20 0 1 1.00 1 1 0 0 0
...........................................................................................................................TCTTGAAAGCCACTAAACTCTATAG...................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................................................GGTTCCTCATTTGCGGCGCCCC.................... 22 2 1 1.00 1 1 0 0 0
...................................................TAAGTTACTAATCAAGGCGATAAGCCC............................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................ACTAAGACGAATCATTTTACCTTCCAGA................................................. 28 0 1 1.00 1 0 1 0 0
..................................................................................................................ATTCGCATATCTTGAAAGCC.................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................................TACTAAGACGAATCATTTTACCTTCC.................................................... 26 0 1 1.00 1 0 1 0 0
............TCGCTGGGCGGCGCTGGAGCGGCCTA.................................................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0
............TCGCTGGGCGGCGCTGGAGCGGCCA..................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
...........................................................................................................................................................................................................................................TGTTACCTTCCAGAAAAGCATGTTTCCT................................... 28 1 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................................................GGTTCCTCATTTGCGGCGCCC..................... 21 1 1 1.00 1 1 0 0 0
..................................................................................................................ATTCGCATATCTTGAAAGCCACTAAAC............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................................AAACAATACTAAGACGAATCATTTTACC........................................................ 28 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................................................TTTTACCTTCCAGAAAAGCATGTTTC..................................... 26 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................................................AGAGCATGTTTCCTCATTTGCGGCGC....................... 26 1 1 1.00 1 1 0 0 0
...................................................................................................................TTCGCATATCTTGAAAGCCACTAAAC............................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................................................AATCATTTTACCTTCCAGAA................................................ 20 0 1 1.00 1 0 1 0 0
......ATCGGATCCATGGGCGGCTCT............................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0
................................................................................................................................................................................................................AAAAACAATCTACACTAAGAC..................................................................... 21 3 9 0.11 1 1 0 0 0
..................................................................................................................ATGCACATACCTTGAAAGCC.................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 1
..................................................................................................................................GGCCACCAAACTCTACAGTA.................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0
.........GCATCGCTGGGCGGCTATGG............................................................................................................................................................................................................................................................................. 20 3 16 0.06 1 0 0 0 1

Anti-sense strand reads

CCGCGGTAGCCTAGCGACCCGCCGCGACCTCGCCGGTTATTCAAACCTGCCATTCAATGATTAGTTCCGCTATTCGGGGTAGCTAAAGGAGCTCACGAAGATTAGGCGATGGATTAAGCGTATAGAACTTTCGGTGATTTGAGATATCATGAAAGGCAACGCAATTAGCATAAAATATTTAAGTTAAATATATCAACTTGGAAATTCTTTTTTGTTTGTTATGATTCTGCTTAGTAAAATGGAAGGTCTTTTCGTACAAAGGAGTAAACGCCGCGGGACAAGTGGTAACCTCGGCACG
**************************************************..(((((((((..((((.......)))).)))))...((((.....))))(((((....(((((((.....)))))))....)))))................))))....................************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
 M058
embryo
 V105
male body		 V039
embryo
.................................................................................................................................................................................................................................TGTGCTTAGTTAATTGGAAGGT................................................... 22 3 1 1.00 1 0 1 0 0 0
...............................................................................................CGAAGATTAGGCGATGGATTA...................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
...................................................................................................GATTAGGCGATGGATTAAGCGTA................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0
............................................................................................................................................GAGATATCAAGAAATGCAACGA........................................................................................................................................ 22 3 1 1.00 1 0 1 0 0 0
.............................................................................................CACGAAGATTAGGCGATGGATT....................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0
................................................................................................................................................................................................................................................................................GCGGGACAAGTGGTAACCT....... 19 0 1 1.00 1 0 0 0 1 0
...................................................................................................................................................................................................................................................................................GGACAAGTGGTAACCTCGGCA.. 21 0 1 1.00 1 1 0 0 0 0
CCGCGGTAGCCTAGCGACCCGC.................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................................................................CGCCGCGGGACAAGTGGTAAC......... 21 0 1 1.00 1 1 0 0 0 0
.............................................................................GGTAGCTAAAGGAGCTCACGAAGAT.................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1
............................................................................................................................................GAGATATCAAGAAAGGCAAGGT........................................................................................................................................ 22 3 4 0.25 1 0 1 0 0 0
......................................................................................................................................................GAAAGCGAACGCAATTAG.................................................................................................................................. 18 2 6 0.17 1 0 1 0 0 0
..................................................................................................................................................................................................................................................................................GGGACAAGGGGCAACCT....... 17 2 18 0.06 1 0 1 0 0 0
.....................................................................ATGTTCGGCGTAGCTAAA................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1
...................................................................................................................................................................................................................................TGTATAGTCAAATGGAAGGT................................................... 20 3 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................................................................................CGGGACAAGTGGCAACGT....... 18 2 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:16288773-16289070 + dan_2045 GGCGCCATCGGATCGCTGGGCGGCGCTGGAGCGGCCAATAAGTTTGGACGGTAA--------GTTAC-T-----AATCAAGG-CGA----------------TAAGCCCC-A-------TCGATTTC---------------------------------------------CTCGAGT------------------------------------------------------------------------------------------------------------------------------------GCTT--------CTAATCCGCTACCTAATTCGCATATCT-TGAAAGCCACTAAA--CTCTATAGTACTTTCCGTTGC------------------------------------------------------------------------GTTAATCGTATTTTATAAATTC------------------------------AATTTATATAGTTGA--------------------AC-CTTTAAGAAAAAACAAA-------------------------------CAATACTAAGACGAAT------------------------------------CAT---TTT-----ACCTTCCAGAAAAGCATGTTTCCTCATTTGCGGCGCCCTGTTCACCATTGGAGCCGTGC
droBip1 scf7180000395838:172831-173117 - GGCGCCATCGGCTCGCTGGGCGGTGCCGGAGCGGCCAATAAGTTTGGCCGGTAA--------GTTAT-T-----AATCAAGG-CGA----------------TAAGCTCA--------------------------------------------------------------GTCGAGT------------------------------------------------------------------------------------------------------------------------------------GCTT--------CTAATCCGCAAGCTAATTCGCATATCT-TGGAAACCACTAAA--TTTTATAGTACTTTCCGTTTG------------------------------------------------------------------------GTTTATCATCATTTATAAA-TC------------------------------AATTTTTA-AGTTTA--------------------GA-ATTTAAAAGAAAATT-T-------------------------------TAATACTAAGA---------------------------------TG-----ACCTTACACT-----TCCTTGCAGGAAAGCATGTTTCCTCATTTGTGGCGCCTTGTTTACCATTGGAGCTGTGC
droKik1 scf7180000302471:598085-598232 + GGCGCCATCGGATCGCTGGGCGGAGCTGGAGCGGCCAACAAGTTTGGCAGGTATTTTATGTAGCTAT-T-----AATCAATG-CGA----------------TAAGCCCCAA-------TAGATTTC---------------------------------------------TTGGAGT------------------------------------------------------------------------------------------------------------------------------------GTTTT-------TTAATCCACCGCCTAATTCGCATATCACAGGAAGCCATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453215:230804-230927 - GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCGGCAAATAAATTCGGCAGGTA---------GCTAT-T-----AATCAAAA-AGA----------------TAAGCCCC-T-------TGGATTTT---------------------------------------------CTTGAGT------------------------------------------------------------------------------------------------------------------------------------GCTT--------CTAATCCGCCAACTAATGCGCGTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491240:774766-774901 + GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCGGCCAATAAATTCGGCAGGTA---------GCTAT-T-----AATCAACTCAGA----------------TAAGCCAC-T-------TGGGTTTT---------------------------------------------CTCGAGT------------------------------------------------------------------------------------------------------------------------------------GTTT--------TTAATCCACCAACTAATTCGCATATCAATAAAAGCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000770177:60512-60738 + GGCGCCATCGGTTCGCTGGGCGGGGCTGGAGCGGCCAATAAATTCGGCAGGTA---------GCTAT-T-----AATCAACT-AGA----------------TAAGCCCC-T-------TGGATTTT---------------------------------------------CTCGAGT------------------------------------------------------------------------------------------------------------------------------------GTTT--------TGGATCCGGCAACTAATTCGAATATCAATAAAAGCCATTCAGAAGTGGCGGGTATTATATGTCGTAACAATCGTT------------------------------------------------------------------------TTCAGTAA---------------------------------CAGTTCGAAAGGGTGA--------------------AC-ACTCT-----------------------------------------------ATTAAGA------------TGGATT--------------------------------------------------------------------------------------AGTATTATGA
droBia1 scf7180000302291:1828564-1828680 + GGCGCCATCGGATCGCTGGGCGGGGCTGGAGCAGCCAATAAATTCGGCAGGTA---------GCTAT-T-----AATCAACC-AGA----------------TAAGCCCC-T-------TGGATTTT---------------------------------------------CCC-------------------------------------------------------------------------------------------------------------------------------------------C--------ATAATCCGCCAACTAATTCTCGTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415088:135731-135858 - GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCGGCCAATAAATTCGGCAGGTAT---GT--AGCTAT-T-----AATCAAGT-AGA----------------TAAGCCCC-T-------GGGATTTT---------------------------------------------CTCAAGT------------------------------------------------------------------------------------------------------------------------------------GCCC--------ATAATCCGCCAACTAATTCTCATATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409474:2804932-2805069 + GGCGCCATCGGTTCGCTAGGCGGTGCTGGTGCGGCTAATAAATTCGGCAGGTA---------GCTAT-T-----AATCAACC-AGA----------------TAAGCACCTT-------TGGATTTT---------------------------------------------CTCAAGT------------------------------------------------------------------------------------------------------------------------------------GCCT--------CTAATCCCGCAACTAATTCATATATCAATATAAGCCATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:3972308-3972601 + GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCAGCCAATAAATTTGGCAGGTAT---GT--AGCTAT-T-----AATCAATT-CGATAAG----------GATAAGCCAC-T-------TGGGTTTC---------------------------------------------CTCAAGT------------------------------------------------------------------------------------------------------------------------------------GTTT--------CTAGTCCGCC----AATTCACATATCTGTATAAACCATTCAT--TTTTGT-------------------------------------------------------------------TTTGTTTTAACTTCCGTTGAACTAAAT----------------------------------------------------------------ATATATATTGAAATGAAA-ATACAAGT--------------------------------------------------CCCTAAGT-------------AATAAATAAATAATT-----ACCT---TAT-----CTTTTCCAGGAAAGCATGCTTTCTTATCTGCGGCGCCCTGTTCACCGTGGGAGCGGTGC
droSim2 2r:4795076-4795434 + dsi_21371 GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCGGCCAATAAATTTGGCAGGTAT---GT--AGCTGT-T-----AATCAATT-AGATAAG----------GATAAGCCAC-T-------TGGCTTTC---------------------------------------------CTCAAGT------------------------------------------------------------------------------------------------------------------------------------GCTT--------CTAATCCGCC----AATTCACATATCTGTAGAAACCATTCATAAGCGGCGGGTATT--ATGCCATAATAATTATTTATTGCCCTTTATATTTTTAGGCTGTTTTAATTTAAATT---TTTGTTTTAACTTCCGTTGAACTAAAT----------------------------------------------------------------ATACATATTGAAATGAAAAATACCAGT--------------------------------------------------CGCTGAGT-------------AATAAATAAATAAAT-----ACCT---TAT-----CTTTTCCAGGAAAGCATGCTTTCTCATCTGCGGCGCCCTGTTCACCGTGGGAGCGGTGC
droSec2 scaffold_1:1616452-1616810 + GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCGGCCAATAAATTTGGCAGGTAT---GT--AGTTGT-T-----AATCAATT-AGATAAG----------GATAAGCCAC-T-------TGGCCTTC---------------------------------------------CTCAAGT------------------------------------------------------------------------------------------------------------------------------------GCTT--------CTAATCCGCC----AATTCACATATTTGTAGAAACCATTCATAAGCGGCGGG-ATT--ATGCCATAATAATTATTTACTGCCCTTTATATATTTAAGCTGTTTTAATTTAAATTTTTTTTGTTTTAACTTCTGTTGAACTAAAT----------------------------------------------------------------ATAC-TA-TGAAATGAAAAATACCAGT--------------------------------------------------CCCTGAGT-------------AACAAATAAATAATT-----ACCT---TAT-----CTTTTCCAGGAAAGCATGCTTTCTCATCTGCGGCGCCCTGTTCACCGTGGGAGCGGTGC
droYak3 2L:16632463-16632723 + GGCATCTGCGGATCCTGCTTCAGCGCTGTGCTTAGCGATAAATACGGCCGGTAA---GG--CCTTCATA------CAATATT-GGGA----------TTGG-----ATTC--TCCATATTA-----TACAAAGTGTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACGTCTTTAATGCTGCTA------------AT---AAA-------------------------------------------------------------------------------------------------------------------------------AAAGTAGTCGACGTGCCATCTTTTCATTC-A---------------------------------------------------ATT-------------------------------GAAA--GGTTTTCTTTAT-------------AATAAATAAGCCCTT-----TCCC---TTT-----TCCTTTCAGTAAGGGATGCCTCGTGATCAGTAGCATCCTTCTCGTTGTTTCCGGCATCC
droEre2 scaffold_4929:18652413-18652683 - GGCATCTGCGGATCCTTCTTCAGCGCTGTGGTTAGCGATAAATACGGCCGGTAA---GA--GCTCTATA-----CAACATTT-TGA----------------TTGGATTCTTTCCATATTA-----TATAGAGTGTTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAAGTATTTAACGCTTCTA------------AG---AGA-------------------------------------------------------------------------------------------------------------------------------AAAGTAGTTGGCGTCCCATTTTCCCATCC-A---------------------------------------------------ATT-------------------------------CAAA--GGATTCCATTAT-----ATAAGAAGAATAAATTACAAATC-----CCTG---TGT-----TCTTTTCAGTAAGGGATGCATGGTGATCAGTAGCATGCTCCTCATTGTTTCCGGCATTC
dp5 3:7829884-7830155 - GGCGCCATCGGCTCGCTGGGCGGGGCTGGGGCGGCCAATAAATTCGGCAGGTAT---GTGTGGCCGT-T-----AATCAGTC-AGA----------------TAAGCCGC-T-------TA-----T---------------------------------------------ATAGAGT------------------------------------------------------------------------------------------------------------------------------------TTTTTATGTCCCCTAATGTGCAAA------------AC---AAATGCCAATACG--A--------------------------------------------------------------------------------------------------------------CCTTAAAATATTCAGTAGGGCATTTATTCAGCGCA---------------------------------------------------AAT-------------------------------CAAAACGGAAACGATTAA-----TAGATTAATTTTAATC-------------TCT---CTC-----TCTTTGCAGAAAAGCATGCTATCTCATTTGCGGGGGGCTGTTTACGGTCGGAGCGGTGC
droPer2 scaffold_4:1740558-1740837 - GGCGCCATCGGCTCGCTGGGCGGGGCTGGGGCGGCCAATAAATTCGGCAGGTAT---GTGTGGCCGT-T-----AATCAGTC-AGA----------------TAAGCCGC-T-------TA-----T---------------------------------------------ATAGAGT------------------------------------------------------------------------------------------------------------------------------------TTTTTATGTCCCCTAATGTGCAAA------------AC---AAATGCCAATACG--A--------------------------------------------------------------------------------------------------------------CCTTAAAATATTCAGTAGGGCATTTATTCAGCGCA---------------------------------------------------AAT-------------------------------CAAAACGGAAACGATTAA-----TAGATTAATATTAATCTCTCTCT-----CTCT---CTC-----TCTTTGCAGAAAAGCATGCTATCTCATTTGCGGGGGGCTGTTTACGGTCGGAGCGGTGC
droWil2 scf2_1100000004954:2301468-2301868 - GGCGCCATCGGATCGTTGGGTGGGGCTGGAGTAGCTAATAAATTTGGCAGGCAA---GT---------T-----AATCGACT--GATAAGATTAAAGTGTA-----ATTC--TTCGTCAC-------------------TTATAAGTTTTTGCTGTAGAGGCTGACAACTTTAATGAATGATAAATGCAAATTATGGTATTTGCATAATGTGAGACGCATTTTCATTTACAGTATAGAAAACAGGCAAGCCAACTTATTGTTGGACGTAATTCATTGAAAGTACTTTTTATATAAAATAAAAAAAAGTTTTTCCC--------CTACTTCACCTATCAGCTAGCGCATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA-TTTAAAGT-----GTACAAAGGATCGATTTAAAATAATTAAATTC---TTT-----CCATTATAGAAAAGCCTGTTTTCTCATTTGTGGTGTACTGTTTACCATTGGAGCTGTAC
droVir3 scaffold_12875:14868680-14868735 + GGTGCAATTGGATCCCTGGGCGGCGCTGGCTTGGCTAATAAATTTGGCAGGTCG---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:7024462-7024816 - GGAGCCATCGGATCTCTGGGTGGTGCTGGCTTGGCTAATAAATTTGGCAGGTTT---GT--ATTTGTATTTTGAAATCGA-----------------TTGA-----TTTA--TCAATGCCA-----TTTTTAGTGCCGCTTATCGGCTTTACCTAGATTAG-------CTTAATTGCCT------------------------------------------------------------------------------------------------------------------------------------GGCT--------TTA----------------GCTAATCT-AGGAATTTCTTAAT--CTACATAG----------------------------------------------------------------------------------------------------------------------------------------------------TTGATTAAGTTCTTAATGAAATGAAA-TTTCTAGCAAAAATAAGTTAGAAACATGCCCTATATAGAAATTTAATCTAATATTTAAACTAAT--CTCCA---------TTTTCTCTCTCTCT-----CTCT---CTCTCTTCATCTCACAGAAAAGCCTGCCTGTTCATTTGTGCCGTTCTCTTTATCATTGGCGCTGTGC
droGri2 scaffold_15245:14890044-14890100 + GGCGCTATTGGATCGCTAGGTGGCGCTGGTCTTGCAAATAAATATGGCAGGTTC---GT--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GGCGCCATCGGATCGCTGGGCGGCGCTGGAGCGGCCAATAAGTTTGGACGGTAA--------GTTAC-T-----AATCAAGG-CGA----------------TAAGCCCC-A-------TCGATTTC---------------------------------------------CTCGAGT------------------------------------------------------------------------------------------------------------------------------------GCTT--------CTAATCCGCTACCTAATTCGCATATCT-TGAAAGCCACTAAA--CTCTATAGTACTTTCCGTTGC------------------------------------------------------------------------GTTAATCGTATTTTATAAATTC------------------------------AATTTATATAGTTGA--------------------AC-CTTTAAGAAAAAACAAA-------------------------------CAATACTAAGACGAAT------------------------------------CAT---TTT-----ACCTTCCAGAAAAGCATGTTTCCTCATTTGCGGCGCCCTGTTCACCATTGGAGCCGTGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................TATCT-TGAAAGCCACTAAA--CTCTATAG............................................................................................................................................................................................................................................................................................................................................................2712.002020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGACGAAT------------------------------------CAT---TTT-----ACCTTCCAGA.................................................2612.002110000
..................................................................................................................................................................................................................................................................................................................................................................................TATAGTACTTTCCGTTGC------------------------------------------------------------------------GTTAATCGTA.............................................................................................................................................................................................................................................................2812.002110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAAGACGAAT------------------------------------CAT---TTT-----ACCTTCCAG..................................................2811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTTCACCATTGGAGCCGTGC2311.001010000
......................................................................................................................................................................................................................................................................................................................................................GCATATCT-TGAAAGCCACTAAA--CTC.................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCTCATTTGCGGCGCC......................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCATTTGCGGCGCCC.....................2011.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTAAGACGAAT------------------------------------CAT---TTT-----ACC........................................................2511.001010000
.............................................................................................................................TC---------------------------------------------CTCGAGT------------------------------------------------------------------------------------------------------------------------------------GCTT--------CTAATCCGCTACC...................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACCATTGGAGCCGTGC2011.001010000
...........................................................................................................................................................................................................................................................................................................................................................TCT-TGAAAGCCACTAAA--CTCTATAG............................................................................................................................................................................................................................................................................................................................................................2511.001010000
...................................................TAA--------GTTAC-T-----AATCAAGG-CGA----------------TAAGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAGACGAAT------------------------------------CAT---TTT-----ACCTTCCAGA.................................................2811.001100000
..................................................................................................................................................................................................................................................................................................................................................ATTCGCATATCT-TGAAAGCC............................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAAGACGAAT------------------------------------CAT---TTT-----ACCTTCC....................................................2611.001100000
............TCGCTGGGCGGCGCTGGAGCGGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................................................................................................ATTCGCATATCT-TGAAAGCCACTAAA--C...................................................................................................................................................................................................................................................................................................................................................................2711.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------------------------------CAATACTAAGACGAAT------------------------------------CAT---TTT-----ACC........................................................2811.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TTT-----ACCTTCCAGAAAAGCATGTTTC.....................................2611.001010000
...................................................................................................................................................................................................................................................................................................................................................TTCGCATATCT-TGAAAGCCACTAAA--C...................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------------------------------------CAT---TTT-----ACCTTCCAGAA................................................2011.001100000
droBip1
GGCGCCATCGGCTCGCTGGGCGGTGCCGGAGCGGCCAATAAGTTTGGCCGGTAA--------GTTAT-T-----AATCAAGG-CGA----------------TAAGCTCA--------------------------------------------------------------GTCGAGT------------------------------------------------------------------------------------------------------------------------------------GCTT--------CTAATCCGCAAGCTAATTCGCATATCT-TGGAAACCACTAAA--TTTTATAGTACTTTCCGTTTG------------------------------------------------------------------------GTTTATCATCATTTATAAA-TC------------------------------AATTTTTA-AGTTTA--------------------GA-ATTTAAAAGAAAATT-T-------------------------------TAATACTAAGA---------------------------------TG-----ACCTTACACT-----TCCTTGCAGGAAAGCATGTTTCCTCATTTGTGGCGCCTTGTTTACCATTGGAGCTGTGCSizeHit CountTotal NormTotal
No Reads
droKik1
GGCGCCATCGGATCGCTGGGCGGAGCTGGAGCGGCCAACAAGTTTGGCAGGTATTTTATGTAGCTAT-T-----AATCAATG-CGA----------------TAAGCCCCAA-------TAGATTTC---------------------------------------------TTGGAGT------------------------------------------------------------------------------------------------------------------------------------GTTTT-------TTAATCCACCGCCTAATTCGCATATCACAGGAAGCCATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCGGCAAATAAATTCGGCAGGTA---------GCTAT-T-----AATCAAAA-AGA----------------TAAGCCCC-T-------TGGATTTT---------------------------------------------CTTGAGT------------------------------------------------------------------------------------------------------------------------------------GCTT--------CTAATCCGCCAACTAATGCGCGTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCGGCCAATAAATTCGGCAGGTA---------GCTAT-T-----AATCAACTCAGA----------------TAAGCCAC-T-------TGGGTTTT---------------------------------------------CTCGAGT------------------------------------------------------------------------------------------------------------------------------------GTTT--------TTAATCCACCAACTAATTCGCATATCAATAAAAGCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGCGCCATCGGTTCGCTGGGCGGGGCTGGAGCGGCCAATAAATTCGGCAGGTA---------GCTAT-T-----AATCAACT-AGA----------------TAAGCCCC-T-------TGGATTTT---------------------------------------------CTCGAGT------------------------------------------------------------------------------------------------------------------------------------GTTT--------TGGATCCGGCAACTAATTCGAATATCAATAAAAGCCATTCAGAAGTGGCGGGTATTATATGTCGTAACAATCGTT------------------------------------------------------------------------TTCAGTAA---------------------------------CAGTTCGAAAGGGTGA--------------------AC-ACTCT-----------------------------------------------ATTAAGA------------TGGATT--------------------------------------------------------------------------------------AGTATTATGASizeHit CountTotal NormTotal
No Reads
droBia1
GGCGCCATCGGATCGCTGGGCGGGGCTGGAGCAGCCAATAAATTCGGCAGGTA---------GCTAT-T-----AATCAACC-AGA----------------TAAGCCCC-T-------TGGATTTT---------------------------------------------CCC-------------------------------------------------------------------------------------------------------------------------------------------C--------ATAATCCGCCAACTAATTCTCGTATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCGGCCAATAAATTCGGCAGGTAT---GT--AGCTAT-T-----AATCAAGT-AGA----------------TAAGCCCC-T-------GGGATTTT---------------------------------------------CTCAAGT------------------------------------------------------------------------------------------------------------------------------------GCCC--------ATAATCCGCCAACTAATTCTCATATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GGCGCCATCGGTTCGCTAGGCGGTGCTGGTGCGGCTAATAAATTCGGCAGGTA---------GCTAT-T-----AATCAACC-AGA----------------TAAGCACCTT-------TGGATTTT---------------------------------------------CTCAAGT------------------------------------------------------------------------------------------------------------------------------------GCCT--------CTAATCCCGCAACTAATTCATATATCAATATAAGCCATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCAGCCAATAAATTTGGCAGGTAT---GT--AGCTAT-T-----AATCAATT-CGATAAG----------GATAAGCCAC-T-------TGGGTTTC---------------------------------------------CTCAAGT------------------------------------------------------------------------------------------------------------------------------------GTTT--------CTAGTCCGCC----AATTCACATATCTGTATAAACCATTCAT--TTTTGT-------------------------------------------------------------------TTTGTTTTAACTTCCGTTGAACTAAAT----------------------------------------------------------------ATATATATTGAAATGAAA-ATACAAGT--------------------------------------------------CCCTAAGT-------------AATAAATAAATAATT-----ACCT---TAT-----CTTTTCCAGGAAAGCATGCTTTCTTATCTGCGGCGCCCTGTTCACCGTGGGAGCGGTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........GGTTCGCTGGGCGGAGCTGGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000002000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......ATCGGTTCGCTGGGCGGAGCTGGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATCTGCGGCGCCCTGTT.................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCTGGAGCAGCCAATAAATTTGGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
GGCGCCATCGGTTCGCTGGGCGGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......TCGGTTCGCTGGGCGGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
GGCGCCATCGGTTCGCTGGGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................GT------------------------------------------------------------------------------------------------------------------------------------GTTT--------CTAGTCCGCC----AATTCACATAT.......................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTTTCTTATCTGCGGC.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GCTGGGCGGAGCTGGAGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGGCGCCCTGTTCACCGTGGGA.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGCTGGGCGGAGCTGGAGCAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CGGAGCTGGAGCAGCCAATAAATTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTATCTGCGGCGCCCTGTTCACCG............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAATAATT-----ACCT---TAT-----CTTT.......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GCTGGGCGGAGCTGGAGCAGCCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GGTTCGCTGGGCGGAGCTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGCTGGGCGGAGCTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCCATCGGTTCGCTGGGCGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...GCCATCGGTTCGCTGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTCTTATCTGCGGCGCCCTGT..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TCGGTTCGCTGGGCGGAGCTGGAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGGGCGGAGCTGGAGCAGCCAATAAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CGCCATCGGTTCGCTGGGCGGAGCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCCCTGTTCACCGTGGGAG......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................GCTGGAGCAGCCAATAAATTTGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGGGCGGAGCTGGAGCAGCCAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGCCCTGTTCACCGTGGGA.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...GCCATCGGTTCGCTGGGCGGAGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTTCACCGTGGGAGCGGT..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATCTGCGGCGCCCTGTTCAC..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GGGCGGAGCTGGAGCAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGCCCTGTTCACCGTGGGAGCG....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CCGCC----AATTCACATATCTGT...................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCCATCGGTTCGCTGGGCGGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCCTGTTCACCGTGGGA.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTTCGCTGGGCGGAGCTGGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........GTTCGCTGGGCGGAGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GGCGGAGCTGGAGCAGCCAATAAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCCATCGGTTCGCTGGGCGGAGCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....CATCGGTTCGCTGGGCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTCCGTTGAACTAAAT----------------------------------------------------------------ATATA...........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGCGGCGCCCTGTTCACCGTGGGA.......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTGAAATGAAA-ATACAAGT--------------------------------------------------CCC................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CATCGGTTCGCTGGGCGGAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATCTGCGGCGCCCTGTTCACCG............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGAAATGAAA-ATACAAGT--------------------------------------------------CC.................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCTGGAGCAGCCAATAAATTTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............CGCTGGGCGGAGCTGGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTTCACCGTGGGAGCGG...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........GTTCGCTGGGCGGAGCTGGAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........GTTCGCTGGGCGGAGCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGCTGGGCGGAGCTGGAGCAGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTTATCTGCGGCGCCCT....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................TGGGCGGAGCTGGAGCAGCCAATAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCGCTGGGCGGAGCTGGAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTTCGCTGGGCGGAGCTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCGCTGGGCGGAGCTGGAGATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TTTGGCAGGTAT---GT--AGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCGGCCAATAAATTTGGCAGGTAT---GT--AGCTGT-T-----AATCAATT-AGATAAG----------GATAAGCCAC-T-------TGGCTTTC---------------------------------------------CTCAAGT------------------------------------------------------------------------------------------------------------------------------------GCTT--------CTAATCCGCC----AATTCACATATCTGTAGAAACCATTCATAAGCGGCGGGTATT--ATGCCATAATAATTATTTATTGCCCTTTATATTTTTAGGCTGTTTTAATTTAAATT---TTTGTTTTAACTTCCGTTGAACTAAAT----------------------------------------------------------------ATACATATTGAAATGAAAAATACCAGT--------------------------------------------------CGCTGAGT-------------AATAAATAAATAAAT-----ACCT---TAT-----CTTTTCCAGGAAAGCATGCTTTCTCATCTGCGGCGCCCTGTTCACCGTGGGAGCGGTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........CGGTTCGCTGGGCGGAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTCACCGTGGGA.......1511.00100000010000000000
........CGGTTCGCTGGGCGGAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGCGCCCTGTTCACCGTGG.........2311.00100100000000000000
........................................AATTTGGCAGGTAT---GT--AGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................GTAGAAACCATTCATAAGCGG................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
droSec2
GGCGCCATCGGTTCGCTGGGCGGAGCTGGAGCGGCCAATAAATTTGGCAGGTAT---GT--AGTTGT-T-----AATCAATT-AGATAAG----------GATAAGCCAC-T-------TGGCCTTC---------------------------------------------CTCAAGT------------------------------------------------------------------------------------------------------------------------------------GCTT--------CTAATCCGCC----AATTCACATATTTGTAGAAACCATTCATAAGCGGCGGG-ATT--ATGCCATAATAATTATTTACTGCCCTTTATATATTTAAGCTGTTTTAATTTAAATTTTTTTTGTTTTAACTTCTGTTGAACTAAAT----------------------------------------------------------------ATAC-TA-TGAAATGAAAAATACCAGT--------------------------------------------------CCCTGAGT-------------AACAAATAAATAATT-----ACCT---TAT-----CTTTTCCAGGAAAGCATGCTTTCTCATCTGCGGCGCCCTGTTCACCGTGGGAGCGGTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............CGCTGGGCGGAGCTGGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.........GGTTCGCTGGGCGGAGCTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGGCGCCCTGTTCACCGTGGGA.......2611.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGCCCTGTTCACCGTGGGAG......2511.0011000
droYak3
GGCATCTGCGGATCCTGCTTCAGCGCTGTGCTTAGCGATAAATACGGCCGGTAA---GG--CCTTCATA------CAATATT-GGGA----------TTGG-----ATTC--TCCATATTA-----TACAAAGTGTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACGTCTTTAATGCTGCTA------------AT---AAA-------------------------------------------------------------------------------------------------------------------------------AAAGTAGTCGACGTGCCATCTTTTCATTC-A---------------------------------------------------ATT-------------------------------GAAA--GGTTTTCTTTAT-------------AATAAATAAGCCCTT-----TCCC---TTT-----TCCTTTCAGTAAGGGATGCCTCGTGATCAGTAGCATCCTTCTCGTTGTTTCCGGCATCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............CCTGCTTCAGCGCTGTGCTTAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
...........................GTGCTTAGCGATAAATACGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACGTGCCATCTTTTC........................................................................................................................................................................................................................2011.00101000000000
..CATCTGCGGATCCTGCTTCAGCGCTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEre2
GGCATCTGCGGATCCTTCTTCAGCGCTGTGGTTAGCGATAAATACGGCCGGTAA---GA--GCTCTATA-----CAACATTT-TGA----------------TTGGATTCTTTCCATATTA-----TATAGAGTGTTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAAGTATTTAACGCTTCTA------------AG---AGA-------------------------------------------------------------------------------------------------------------------------------AAAGTAGTTGGCGTCCCATTTTCCCATCC-A---------------------------------------------------ATT-------------------------------CAAA--GGATTCCATTAT-----ATAAGAAGAATAAATTACAAATC-----CCTG---TGT-----TCTTTTCAGTAAGGGATGCATGGTGATCAGTAGCATGCTCCTCATTGTTTCCGGCATTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
GGCGCCATCGGCTCGCTGGGCGGGGCTGGGGCGGCCAATAAATTCGGCAGGTAT---GTGTGGCCGT-T-----AATCAGTC-AGA----------------TAAGCCGC-T-------TA-----T---------------------------------------------ATAGAGT------------------------------------------------------------------------------------------------------------------------------------TTTTTATGTCCCCTAATGTGCAAA------------AC---AAATGCCAATACG--A--------------------------------------------------------------------------------------------------------------CCTTAAAATATTCAGTAGGGCATTTATTCAGCGCA---------------------------------------------------AAT-------------------------------CAAAACGGAAACGATTAA-----TAGATTAATTTTAATC-------------TCT---CTC-----TCTTTGCAGAAAAGCATGCTATCTCATTTGCGGGGGGCTGTTTACGGTCGGAGCGGTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GGCGCCATCGGCTCGCTGGGCGGGGCTGGGGCGGCCAATAAATTCGGCAGGTAT---GTGTGGCCGT-T-----AATCAGTC-AGA----------------TAAGCCGC-T-------TA-----T---------------------------------------------ATAGAGT------------------------------------------------------------------------------------------------------------------------------------TTTTTATGTCCCCTAATGTGCAAA------------AC---AAATGCCAATACG--A--------------------------------------------------------------------------------------------------------------CCTTAAAATATTCAGTAGGGCATTTATTCAGCGCA---------------------------------------------------AAT-------------------------------CAAAACGGAAACGATTAA-----TAGATTAATATTAATCTCTCTCT-----CTCT---CTC-----TCTTTGCAGAAAAGCATGCTATCTCATTTGCGGGGGGCTGTTTACGGTCGGAGCGGTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGGGCTGTTTACGGTCGGAGC.....2411.001100000
droWil2
GGCGCCATCGGATCGTTGGGTGGGGCTGGAGTAGCTAATAAATTTGGCAGGCAA---GT---------T-----AATCGACT--GATAAGATTAAAGTGTA-----ATTC--TTCGTCAC-------------------TTATAAGTTTTTGCTGTAGAGGCTGACAACTTTAATGAATGATAAATGCAAATTATGGTATTTGCATAATGTGAGACGCATTTTCATTTACAGTATAGAAAACAGGCAAGCCAACTTATTGTTGGACGTAATTCATTGAAAGTACTTTTTATATAAAATAAAAAAAAGTTTTTCCC--------CTACTTCACCTATCAGCTAGCGCATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA-TTTAAAGT-----GTACAAAGGATCGATTTAAAATAATTAAATTC---TTT-----CCATTATAGAAAAGCCTGTTTTCTCATTTGTGGTGTACTGTTTACCATTGGAGCTGTACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGTACTGTTTACCATTGGAGC.....2611.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTACCATTGGAGCTGT..2011.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTCTCATTTGTGGT.........................1811.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTTACCATTGGAGCTGT..2311.00100010
.............CGTTGGGTGGGGCTGGAGTAGCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
droVir3
GGTGCAATTGGATCCCTGGGCGGCGCTGGCTTGGCTAATAAATTTGGCAGGTCG---GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............CCCTGGGCGGCGCTGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000002
.....AATTGGATCCCTGGGCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......ATTGGATCCCTGGGCGGCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
droMoj3
GGAGCCATCGGATCTCTGGGTGGTGCTGGCTTGGCTAATAAATTTGGCAGGTTT---GT--ATTTGTATTTTGAAATCGA-----------------TTGA-----TTTA--TCAATGCCA-----TTTTTAGTGCCGCTTATCGGCTTTACCTAGATTAG-------CTTAATTGCCT------------------------------------------------------------------------------------------------------------------------------------GGCT--------TTA----------------GCTAATCT-AGGAATTTCTTAAT--CTACATAG----------------------------------------------------------------------------------------------------------------------------------------------------TTGATTAAGTTCTTAATGAAATGAAA-TTTCTAGCAAAAATAAGTTAGAAACATGCCCTATATAGAAATTTAATCTAATATTTAAACTAAT--CTCCA---------TTTTCTCTCTCTCT-----CTCT---CTCTCTTCATCTCACAGAAAAGCCTGCCTGTTCATTTGTGCCGTTCTCTTTATCATTGGCGCTGTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---CTCTCTTCATCTCACAGA.................................................1911.001000010
........................GCTGGCTTGGCTAATAAATTTGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................CTACATAG----------------------------------------------------------------------------------------------------------------------------------------------------TTGATTAAGTTCTTAATGAA....................................................................................................................................................................................2811.001100000
droGri2
GGCGCTATTGGATCGCTAGGTGGCGCTGGTCTTGCAAATAAATATGGCAGGTTC---GT--T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:33 AM