ID:

dan_2029

 Coordinate:

scaffold_13266:15416952-15417188 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-49.3 -49.3 -49.2

Flybase annnotation

exon [dana_GLEANR_13584:1]; CDS [Dana\GF13571-cds]; CDS [Dana\GF13571-cds]; exon [dana_GLEANR_13584:2]; intron [Dana\GF13571-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCAAATCCCTCCAAAAAAAGGCCACTGGACACATCTAAAAATGACTCTGGTGGGCCAAAGAAAAAACAGAAAAAGAATGCGGATTCAAAGCCAAAACTTCCAATTGTTGGGCCGACGAAAGGTAACATCATCTTGTTTTTATTTAAACACACACCAACCGATCTTTCTCTTTTAGGTGCTGGTCCATTAAAGAAAAAAAATGCTGAAAAAAGGATCAATGGAAAAGGCGCAGTCCCTGACCCGGTTCGAGGAAATCCTGCGAAGGTTGTGTCTATATCTTTGGCAGACAAAGGATTCTATGAATCTGATGCAGACAGTCAGGACCAAGAGGCTGTG
**************************************************....((((((((....(((.((......((((((((....(((..(((........))).))).((.(((((((..........(((((......)))))...........)))))))))......(((((..((((((...........((.((......)).)).))))))...)))))..(((.(((......))).)))))))).)))....)).))).....))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
 M044
female body
 V105
male body
............................................................GAAAAAACAGAAAAAGAATCCC............................................................................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0
.....................................AAAAATGACTCTGGTGGGCC........................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................AAAAGGCGCAGTCCCTGACCC.............................................................................................. 21 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................GATGCAGACAGTCAGGACCAAGAGGC.... 26 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................GATGCAGACAGTCAGGACC........... 19 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................TTTATTTAAACAGACACCA.................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0
..............................................................................................AAACTTCCAATTGCTGAGC................................................................................................................................................................................................................................ 19 2 5 0.20 1 1 0 0 0 0
..........................................................AAGAAAAAGCAGAAAAAGAA................................................................................................................................................................................................................................................................... 20 1 5 0.20 1 0 0 1 0 0
......................................................................................................................................................................................................................................................TCGAGGAAGTCCTGAGAAGGG...................................................................... 21 3 5 0.20 1 0 0 1 0 0
..........................................................AAGAAAGAACAGAAAAAGA.................................................................................................................................................................................................................................................................... 19 1 6 0.17 1 1 0 0 0 0
..........................................................AAGAAAAGACAGAAAAAGA.................................................................................................................................................................................................................................................................... 19 1 7 0.14 1 1 0 0 0 0
......................................................................................................................................TGGTTTTATATAAAAACACACC..................................................................................................................................................................................... 22 3 8 0.13 1 1 0 0 0 0
..............................................................................................................................................TCTAAAGACGCACCAACCGA............................................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0
.......................................................ACAAAGAGAAAACAGAAAAAGA.................................................................................................................................................................................................................................................................... 22 2 9 0.11 1 0 1 0 0 0
.................................................................................................................................................................................................................................................................CTTCGTAGGTTGTGTCTAC............................................................. 19 3 12 0.08 1 0 0 0 1 0
........................................................................................................................................................................TCTTGTGGGTGGTGGTCCAT..................................................................................................................................................... 20 3 13 0.08 1 0 0 0 1 0
..................................................................................................................................................................................................................................TGCGCAGTCGCTGACCGGG............................................................................................ 19 3 18 0.06 1 0 0 1 0 0
...................................................................................................................ACGCAAGGGCACATCATCT........................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 1 0 0
.............................................................AAAAAACAGAAAAAGAGT.................................................................................................................................................................................................................................................................. 18 1 20 0.05 1 1 0 0 0 0
.........................................................AAAGAAAAAACAGAAAAAAAA................................................................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
..........................................................AAGAAAAAACAGAAAGAGG.................................................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 1 0 0
..........................................................AAGAAAAAAGAGAAAAAGA.................................................................................................................................................................................................................................................................... 19 1 20 0.05 1 0 1 0 0 0
..............AAAAAAAGCCACGGGACCCA............................................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................ACACCCCGATCGATCTTTC......................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
.........................................................AAAGAAAAAACAGAGGAAGAA................................................................................................................................................................................................................................................................... 21 2 20 0.05 1 0 0 0 0 1
.........................................................AAAGAAAAAACCGAGAAAGA.................................................................................................................................................................................................................................................................... 20 2 20 0.05 1 1 0 0 0 0
.........................................................AAAGAAAGAACATAAAAAGA.................................................................................................................................................................................................................................................................... 20 2 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................ATCAATTTTAGGTGCTGGT......................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TAGTTTAGGGAGGTTTTTTTCCGGTGACCTGTGTAGATTTTTACTGAGACCACCCGGTTTCTTTTTTGTCTTTTTCTTACGCCTAAGTTTCGGTTTTGAAGGTTAACAACCCGGCTGCTTTCCATTGTAGTAGAACAAAAATAAATTTGTGTGTGGTTGGCTAGAAAGAGAAAATCCACGACCAGGTAATTTCTTTTTTTTACGACTTTTTTCCTAGTTACCTTTTCCGCGTCAGGGACTGGGCCAAGCTCCTTTAGGACGCTTCCAACACAGATATAGAAACCGTCTGTTTCCTAAGATACTTAGACTACGTCTGTCAGTCCTGGTTCTCCGACAC
**************************************************....((((((((....(((.((......((((((((....(((..(((........))).))).((.(((((((..........(((((......)))))...........)))))))))......(((((..((((((...........((.((......)).)).))))))...)))))..(((.(((......))).)))))))).)))....)).))).....))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 M058
embryo
 V055
head
 V106
head
AAGTTTAGGGAGGTTTTTTT............................................................................................................................................................................................................................................................................................................................. 20 1 1 4.00 4 2 2 0 0 0
AAGTTTAGGGAGGTTTTTT.............................................................................................................................................................................................................................................................................................................................. 19 1 1 2.00 2 1 1 0 0 0
...............................................................................................................................................AATTTTTTTGTGGTGGGCTAG............................................................................................................................................................................. 21 3 7 1.14 8 8 0 0 0 0
AAGTTTAGGGAGGTTTTTTTG............................................................................................................................................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0
AAGTTTAGGGAGGTTTTTTTGC........................................................................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0
.............TTTTTTTCCGGCGACCTGT................................................................................................................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0
................................................ACCACCCGGTTTCTTTAT............................................................................................................................................................................................................................................................................... 18 1 2 1.00 2 0 0 2 0 0
.AGTTTAGGGAGGTTTTTTTTG........................................................................................................................................................................................................................................................................................................................... 21 2 2 0.50 1 0 1 0 0 0
AAGTTTAGGGAGGTTTTT............................................................................................................................................................................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................AAGCCCACGACCAGGGAATTT................................................................................................................................................. 21 3 4 0.25 1 0 0 1 0 0
AAGTTTAGGGAGGTTTTTTTTG........................................................................................................................................................................................................................................................................................................................... 22 3 17 0.24 4 0 4 0 0 0
...............TTTTTCCTGTGACCCGTTTAG............................................................................................................................................................................................................................................................................................................. 21 3 7 0.14 1 0 0 1 0 0
..GTTTAGGGAGGTTTTTTTTG........................................................................................................................................................................................................................................................................................................................... 20 2 9 0.11 1 0 1 0 0 0
..........................................................................TCTTACGCTGAAGTTTCGGA................................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 1 0
......................................................................................................................................................TTGTGGTGGGCTAGAAA.......................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 1 0
.AGTTTAGGGAGGCTTCTGT............................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................TTTGTGGTGGGCTAGACAG......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
.AGTTTAGGGAGGTTTTTTTTGC.......................................................................................................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 1 0
.....................................................................................................................................................................................CCAGGTAATTTTCTTTTTT......................................................................................................................................... 19 2 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:15416902-15417238 + dan_2029 ATCAAA------TCCC---------TCCAAAAAAAGGCCACTGGACACATCTAAAAATGACTCTGGTGGGCCAAAGAAAAAACAGAAAAAGAATGCGGATTCAAAGCCAAAACTTCCAATTGTTGGGCCGAC---GAAAGGTAACATCATCTTGTTTTTATTTAAACACACACCAACCGATCTTTCTCTTTTAGGTGCTGGTCCATTAAAGAAAAAAAATGCTGAAAAAAGGATCAATGGAAAAGGCGCAGTCCCTGACCC---------------------------------GGTTCGAGGAAATCCTGCGAAGGTTGTGTCTATATCTTTGGCAGACAAAGGATTCTATGAATCTGATGCAGACAGTCAGGACCAAGAGGCTGTG
droBip1 scf7180000396547:1632091-1632448 - ATCCCAGCCAACTCCCAAGAACAAGACCAAAAAAAGGCCATTGGACTCATCTAAAGATAAATCTGGTGGTCCAAAGAAAAAGCAGAAAAAG------------------------------GTTGCGCCGACGACTAAAGGTAACTTCATCTTGTTTTTATTTAAGCACTCGCCAATCAAGCTTTTGTTTTTAGGAAAAGCTCCACTAAAAAATAAAAAGTCTGAGAAAAGAATAAATGGAAAAGGCCCAGTTTCCGTCCCAAAAAGTTCCATAAATGGACGCCAAGGAGCGTCGACTCCAGCAAAACCTGGGAAGGTAGTCCAAATCGCTTTTGCAGGCAATGGATTTGGCGGATCTGAGGAAGACGATCAGGACGAAGAAGTTTTG
droEle1 scf7180000491107:1000527-1000563 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGATTCGATGAATTCA--GAGGACGATTG---------GGCTGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ATCAAA------TCCC---------TCCAAAAAAAGGCCACTGGACACATCTAAAAATGACTCTGGTGGGCCAAAGAAAAAACAGAAAAAGAATGCGGATTCAAAGCCAAAACTTCCAATTGTTGGGCCGAC---GAAAGGTAACATCATCTTGTTTTTATTTAAACACACACCAACCGATCTTTCTCTTTTAGGTGCTGGTCCATTAAAGAAAAAAAATGCTGAAAAAAGGATCAATGGAAAAGGCGCAGTCCCTGACCC---------------------------------GGTTCGAGGAAATCCTGCGAAGGTTGTGTCTATATCTTTGGCAGACAAAGGATTCTATGAATCTGATGCAGACAGTCAGGACCAAGAGGCTGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................AAAAATGACTCTGGTGGGCC............................................................................................................................................................................................................................................................................................................................2011.001010000
................................................................................................................................................................................................................................................AAAAGGCGCAGTCCCTGACCC---------------------------------..............................................................................................2111.001010000
......................................................................................................................................................................................................................................................................................................................................................................GATGCAGACAGTCAGGACCAAGAGGC....2611.001001000
......................................................................................................................................................................................................................................................................................................................................................................GATGCAGACAGTCAGGACC...........1911.001010000
droBip1
ATCCCAGCCAACTCCCAAGAACAAGACCAAAAAAAGGCCATTGGACTCATCTAAAGATAAATCTGGTGGTCCAAAGAAAAAGCAGAAAAAG------------------------------GTTGCGCCGACGACTAAAGGTAACTTCATCTTGTTTTTATTTAAGCACTCGCCAATCAAGCTTTTGTTTTTAGGAAAAGCTCCACTAAAAAATAAAAAGTCTGAGAAAAGAATAAATGGAAAAGGCCCAGTTTCCGTCCCAAAAAGTTCCATAAATGGACGCCAAGGAGCGTCGACTCCAGCAAAACCTGGGAAGGTAGTCCAAATCGCTTTTGCAGGCAATGGATTTGGCGGATCTGAGGAAGACGATCAGGACGAAGAAGTTTTGSizeHit CountTotal NormTotal
No Reads
droEle1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGATTCGATGAATTCA--GAGGACGATTG---------GGCTGAASizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 03:32 AM