ID:

dan_2027

 Coordinate:

scaffold_13266:15391088-15391238 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-49.2 -49.0 -49.0

Flybase annnotation

CDS [Dana\GF11295-cds]; exon [dana_GLEANR_11363:2]; intron [Dana\GF11295-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAGATGCTGGCGCTGTTCTACTTCGCCATTCCGGTGGGATCCGGCCTGGGGTGAGTGTCCAAAGATCAGTCCGGCAGATGGGGTCTTATCGCCGGTCTGGCCGCTTATCAGGCGGCAGATGCTAATGGGGCCAAAGGCTAGACTCTTCGCGAAATCAGTACCAGAAGCGTGAGAAGCATCACGAGACTCCGGCTGGCAATTGATATTGGATTTCGTTTGGAATGCCGCTGGTGGCAATTGGTGGCTCTAAT
**************************************************(((((.(((.......(((.(((((.(((((....)))))))))).)))(((((((...)))))))............((((...)))).)))..)))))....(((((...((...(((((......)))))...))...))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 V105
male body		 V055
head
 M058
embryo
............................................................................GATGGGGTCTTATGGCTGG............................................................................................................................................................ 19 2 4 632.50 2530 823 1117 549 41 0
.........................................................................GGAGATGGGGTCTTATGGCTGG............................................................................................................................................................ 22 3 1 330.00 330 249 25 50 6 0
.............................................................................ATGGGGTCTTATGGCTGG............................................................................................................................................................ 18 2 8 153.38 1227 799 150 219 59 0
...........................................................................AGATGGGGTCTTATGGCTGG............................................................................................................................................................ 20 2 1 151.00 151 113 11 25 2 0
.......................................................................CCGGAGATGGGGTCTTAT.................................................................................................................................................................. 18 2 2 123.50 247 223 9 4 11 0
.........................................................................GGAGATGGGGTCTTATGGC............................................................................................................................................................... 19 2 2 122.00 244 189 22 26 4 3
.........................................................................GGAGATGGGGTCTTATGGCTG............................................................................................................................................................. 21 3 3 118.33 355 312 5 34 4 0
.........................................................................GGAGATGGGGTCTTATGGCT.............................................................................................................................................................. 20 3 6 79.33 476 398 37 38 3 0
...........................................................................AGATGGGGTCTTATGGCTGGA........................................................................................................................................................... 21 3 5 48.20 241 159 52 26 4 0
...........................................................................AGATGGGGTCTTATGGCTG............................................................................................................................................................. 19 2 4 42.25 169 149 11 7 2 0
.......................................................................CCGGAGATGGGGTCTTATGG................................................................................................................................................................ 20 3 6 34.33 206 133 12 59 2 0
..........................................................................GAGATGGGGTCTTATGGCTGG............................................................................................................................................................ 21 3 4 32.00 128 101 13 11 3 0
.......................................................................CCGGAGATGGGGTCTTATG................................................................................................................................................................. 19 3 20 25.95 519 295 55 151 18 0
.........................................................................GGAGATGGGGTCTTATGG................................................................................................................................................................ 18 2 7 23.14 162 135 8 19 0 0
...........................................................................AGATGGGGTCTTATGGCT.............................................................................................................................................................. 18 2 7 21.57 151 129 19 2 1 0
........................................................................CGGAGATGGGGTCTTATGGC............................................................................................................................................................... 20 3 9 12.78 115 78 1 32 4 0
.......................................................................CCGGAGATGGGGTCTTATGGC............................................................................................................................................................... 21 3 5 12.20 61 40 1 15 2 3
..........................................................................GAGATGGGGTCTTATGGCTG............................................................................................................................................................. 20 3 12 11.25 135 115 7 12 1 0
............................................................................GATGGGGTCTTATCGCTGG............................................................................................................................................................ 19 1 1 5.00 5 2 1 1 1 0
.............................................................................ATGGGGTCTTATCGCTGG............................................................................................................................................................ 18 1 1 5.00 5 2 0 3 0 0
........................................................................CGGAGATGGGGTCTTATGG................................................................................................................................................................ 19 3 20 4.20 84 61 3 19 1 0
...........................................................................AGATGGGGTCTTATGGCTGGG........................................................................................................................................................... 21 3 2 4.00 8 0 4 0 4 0
.............................................................................ATGGGGTCTTATGGCCGGA........................................................................................................................................................... 19 2 1 3.00 3 1 0 2 0 0
............................................................................GATGGGGTCTTATTGCTGG............................................................................................................................................................ 19 2 2 2.50 5 0 5 0 0 0
.........................................................................GCAGATGGGGTCTTATGGCTG............................................................................................................................................................. 21 2 1 2.00 2 1 1 0 0 0
...........................................................................ATATGGGGTCTTATGGCTGG............................................................................................................................................................ 20 3 2 2.00 4 1 0 3 0 0
.............................................................................ATGGGGTCTTATGGCAGG............................................................................................................................................................ 18 2 1 2.00 2 1 0 0 1 0
............................................................................GATGGGGTCTTATGGCTGGT........................................................................................................................................................... 20 2 1 2.00 2 0 1 1 0 0
............................................................................GATGGGGTCTTATGGCCGGA........................................................................................................................................................... 20 2 1 2.00 2 0 1 1 0 0
......................................................................CCCGGAGATGGGGTCTTATGG................................................................................................................................................................ 21 3 1 1.00 1 0 0 1 0 0
.........................................................................GCAGATGGGGTCTTATGG................................................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0
.......................................................................CCGGAGATGGGGTCTTATCGC............................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
............................................................................GATGGGGTCTTATAGCTGG............................................................................................................................................................ 19 2 2 1.00 2 0 1 0 1 0
...................................................................................................................................................................................................................................CTGGTGGCAATTGGTGGCTCT... 21 0 1 1.00 1 0 0 0 0 1
.................CTACTTCGCCATTCCGGTGG...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
......................................................................CCCGGAGATGGGGTCTTAT.................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0
.........................................................................GTAGATGGGGTCTTATGG................................................................................................................................................................ 18 2 2 1.00 2 0 0 1 0 1
................TCTACTTCGCCATTCCGGTGGGATCCGGC.............................................................................................................................................................................................................. 29 0 1 1.00 1 0 1 0 0 0
...........................................................................AGATGGGGTCTTATGGCTGGT........................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0
.........................................................................GGAGATGGGGTCTTATTGC............................................................................................................................................................... 19 2 2 1.00 2 1 1 0 0 0
....................CTTCGCCATTCCGGTGGGATCCGGC.............................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1
.............................................................................ATGGGGTCTTATAGCTGG............................................................................................................................................................ 18 2 2 1.00 2 0 0 2 0 0
............................................................................GATGGGGTCTTATCCCTGGTCTC........................................................................................................................................................ 23 3 1 1.00 1 0 0 0 1 0
.............................................................................ATGGGGTCTTATCGCTGGA........................................................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0
.........................................................TCCAAAGATCAGTCCGGCAGATGGG......................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.............................................................................ATGGGGTCTTATGGCCGG............................................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0
.........................................................................GGAGATGGGGTCTTATTGCTGG............................................................................................................................................................ 22 3 2 1.00 2 2 0 0 0 0
............................................................................GATGGGGTCTTATGGCCG............................................................................................................................................................. 18 1 1 1.00 1 0 0 1 0 0
.......................................................................................................................................................................................CGACTCCGGCTGGCAATTG................................................. 19 1 1 1.00 1 0 0 0 1 0
.......................................................................CCGCAGATGGGGTCTTAT.................................................................................................................................................................. 18 1 1 1.00 1 0 0 0 1 0
......................................................................CCCGGAGATGGGGTCTTA................................................................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0
........................................................................GGGAGATGGGGTCTTATGGCTGG............................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0
.................CTACTTCGCCATTCCGGTGGGATCC................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1
.......................................................................CGGGAGATGGGGTCTTATGGCTGG............................................................................................................................................................ 24 3 1 1.00 1 0 0 1 0 0
.............................................................................ATGGGGTCTTATTGCTGG............................................................................................................................................................ 18 2 3 0.67 2 1 1 0 0 0
............................................................................GATGGGGTCTTATGGCTGGACT......................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0
.........................................................................GTAGATGGGGTCTTATGGC............................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 1
.........................................................................GGAGATGGGGTCTTATAGCTGG............................................................................................................................................................ 22 3 2 0.50 1 1 0 0 0 0
............................................................................TATGGGGTCTTATGGCTGG............................................................................................................................................................ 19 3 20 0.50 10 5 2 3 0 0
..........................................................................GAGATGGGGTCTTATGGCC.............................................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0
........................................................................GGGAGATGGGGTCTTATGGCTG............................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0
...........................................................................AGATGGGGACTTATGGCTGG............................................................................................................................................................ 20 3 8 0.50 4 4 0 0 0 0
.......................................................................CTGGAGATGGGGTCTTATGGC............................................................................................................................................................... 21 3 4 0.50 2 1 0 1 0 0
.....................................................................ACCCGGAGATGGGGTCTTAT.................................................................................................................................................................. 20 3 2 0.50 1 1 0 0 0 0
.......................................................................CTGGAGATGGGGTCTTAT.................................................................................................................................................................. 18 2 2 0.50 1 0 0 1 0 0
.........................................................................GTAGATGGGGTCTTATGGCTGG............................................................................................................................................................ 22 3 2 0.50 1 0 0 1 0 0
.............................................................................ATGGGGTCTTATTGCTGGA........................................................................................................................................................... 19 3 16 0.44 7 0 2 5 0 0
............................................................................GATGGGGCCTTATGGCTGG............................................................................................................................................................ 19 3 20 0.35 7 2 4 0 1 0
......................................................................CCCGGAGATGGGGTCTTATG................................................................................................................................................................. 20 3 3 0.33 1 0 0 1 0 0
.............................................................................................................................TGGGGCCAAGGACGAGACTCT......................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
.........................................................................CCAGATGGGGTCTTATGGCTG............................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0
............................................................................GATGGGGTCTTATTGCTGGA........................................................................................................................................................... 20 3 9 0.33 3 0 3 0 0 0
.............................................................................ATGGGGTCTTATGGCTGGGC.......................................................................................................................................................... 20 3 7 0.29 2 0 0 0 2 0
........................................................................CGGAGATGGGGTCTTATGGCC.............................................................................................................................................................. 21 3 4 0.25 1 0 0 1 0 0
.......................................................................CTGGAGATGGGGTCTTATGG................................................................................................................................................................ 20 3 8 0.25 2 0 0 2 0 0
...........................................................................ATATGGGGTCTTATGGCTG............................................................................................................................................................. 19 3 20 0.25 5 5 0 0 0 0
........................................................................CGGAGCTGGGGTCTTATCGC............................................................................................................................................................... 20 3 4 0.25 1 0 0 0 1 0
...........................................................................AGATGGGGTCTTATTGCT.............................................................................................................................................................. 18 2 9 0.22 2 1 1 0 0 0
.........................................................................GGAGATGGGGTCTTATGGCGG............................................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0
...........................................................................AGATGGTGTCTTATGGCTGG............................................................................................................................................................ 20 3 5 0.20 1 1 0 0 0 0
............................................................................GATGGGGTCTTATTGCTG............................................................................................................................................................. 18 2 11 0.18 2 0 2 0 0 0
......................................................................TCTGGAGATGGGGTCTTAT.................................................................................................................................................................. 19 3 12 0.17 2 2 0 0 0 0
...........................................................................TGATGGGGTCTTATGGCTGG............................................................................................................................................................ 20 3 12 0.17 2 2 0 0 0 0
.........................................................................GTAGATGGGGTCTTATGGCT.............................................................................................................................................................. 20 3 6 0.17 1 0 1 0 0 0
...........................................................................AGACGGGGTCTTATGGCTGG............................................................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0
.....................................................................TTCCGGAGATGGGGTCTTAT.................................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0
...........................................................................AGATGGGGCCTTATGGCTGG............................................................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0
.......................................................................CTGGAGATGGGGTCTTATG................................................................................................................................................................. 19 3 20 0.15 3 1 0 1 1 0
............................................................................GATGGCGTCTTATGGCTGG............................................................................................................................................................ 19 3 20 0.15 3 0 1 2 0 0
...........................................................................AGATGGGGTCTTATGGTTG............................................................................................................................................................. 19 3 14 0.14 2 2 0 0 0 0
...........................................................................AGATGGGGTCTTATTGCTG............................................................................................................................................................. 19 2 7 0.14 1 1 0 0 0 0
................................GGTCGAATCCGGCCCGGGG........................................................................................................................................................................................................ 19 3 15 0.13 2 0 0 0 0 2
.............................................................................ATGGGGTCTTATGGCCTG............................................................................................................................................................ 18 2 8 0.13 1 0 0 1 0 0
.........................................................................GGAGATGGGGTCTTATTG................................................................................................................................................................ 18 2 8 0.13 1 0 1 0 0 0
............................................................................GATGGGGTCTTATGGCTGGC........................................................................................................................................................... 20 3 16 0.13 2 1 0 1 0 0
............................................................................GAGGGGGTCTTATGGCTGGT........................................................................................................................................................... 20 3 8 0.13 1 0 0 0 1 0
............................................................................GATGGGGTCTCATCGCTGGA........................................................................................................................................................... 20 3 10 0.10 1 0 0 1 0 0
.......................................................................CCGGAGATGGGGTCTTA................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 1 0
...........................................................................AGATGGGGTCTTGTGGCTGG............................................................................................................................................................ 20 3 10 0.10 1 1 0 0 0 0
.............................................................................................................................................................GTAACAGAGGCGTGCGAAG........................................................................... 19 3 11 0.09 1 0 0 0 1 0
.............................................................................ATGGGGTCTTATGCCTGGT........................................................................................................................................................... 19 3 11 0.09 1 0 0 0 1 0
.....................................................................ACCCGGAGATGGGGTCTTA................................................................................................................................................................... 19 3 12 0.08 1 0 0 1 0 0
.............................................................................ATGGGGTCTTATGGCAGGA........................................................................................................................................................... 19 3 13 0.08 1 0 0 1 0 0
........................................................................TGGAGATGGGGTCTTATGGC............................................................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0
.........................................................................GGAGATTGGGTCTTATGGC............................................................................................................................................................... 19 3 18 0.06 1 0 0 1 0 0
.........................................................................GGAGATGGGGTCTTATG................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 1 0
........................................................................................................................................................................................................................TTGGAATACCGGTGGTGGT................ 19 3 20 0.05 1 0 1 0 0 0
.......................................................................CCGCAGATGGGGTCTTTTG................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0
.......................................................................CCGGAGATGGGGTTTTATC................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0
......................................................................GCCGGAGATGGGGTCTTAT.................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

TTCTACGACCGCGACAAGATGAAGCGGTAAGGCCACCCTAGGCCGGACCCCACTCACAGGTTTCTAGTCAGGCCGTCTACCCCAGAATAGCGGCCAGACCGGCGAATAGTCCGCCGTCTACGATTACCCCGGTTTCCGATCTGAGAAGCGCTTTAGTCATGGTCTTCGCACTCTTCGTAGTGCTCTGAGGCCGACCGTTAACTATAACCTAAAGCAAACCTTACGGCGACCACCGTTAACCACCGAGATTA
**************************************************(((((.(((.......(((.(((((.(((((....)))))))))).)))(((((((...)))))))............((((...)))).)))..)))))....(((((...((...(((((......)))))...))...))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
.....................................................................................................................................................................................GCTCTGAGGCCGATCGATA................................................... 19 2 2 0.50 1 1 0
.............................................GGCCCCACACAGAGGTTTC........................................................................................................................................................................................... 19 3 13 0.08 1 0 1
......................................................................................................................................TCCGATCTGAGAAGCACAA.................................................................................................. 19 3 15 0.07 1 0 1
....................................................................................GAATAGTCGCCAGGCCGGC.................................................................................................................................................... 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:15391038-15391288 - dan_2027 AAGATGCTGGCGCTGTTCTACTTCGCCATTCCGGTGGGATCCGGCCTGGGGTGAGTGTC--------------------------------------------CAAAGATC-------AG---------TC---CGGCA----GATGGGG--TCTTATCGCC------GGTCTG---------------------------------------GCCGCTTATCAGGC---GGCAGATGCTA--------ATG-G-GGCCAAAGGCT-----------------AGA-------------CTCT-TCGCGAAATCAG-TAC--C----------A---GAAGCGTGAGAAGCA--TCACGAGACTCCGG----C---------------------------TGG------CAATTGATATTGGATTTCGTTTGGAATGCCGCTGGTGGCAATTGGTG------G--CTCTAAT
droBip1 scf7180000396547:1658213-1658504 + AAGATGCTGGCGATGTTCTACTTTGCCATTCCCGTGGGATCCGGTCTGGGGTGAGTGTACAAG--TG----GA----------------------GTCC-GACCAAAGATCA-------G---------TTCGCCG-CCA---GATGAGC--TCTTATCACC--AGCAGGTCTG---------------------------------------GCAGCTTATC-------------AGGCGATATGCTAATGG--GGGCTAAGTTCACAGCTGA----AGGCTAGA-------------GTCTCTTC-GAAATCAG-TATCACAATC-TCTGAA---GAAGCGTGAGAAGCA--TCACGAGACTCCAGCCTTC---------------------------CAG------CAATTGATATTGGGATTCGTTTGGAATGCCG-------CAATTGGTG------G--CTTTAAT
droKik1 scf7180000302476:2721130-2721468 + AGGATGCTAGCCCTCTTCTATTTTGCCATTCCCGTGGGATCCGGTCTGGGGTAAGTCTTACA---AA----GACATTG--CCATCTGGGATCAATGTTCAGATCGGTGATCAGCAAAGCA---------TC---CG-----------GGC--TCTTATCTTG------CGTCTGAT-TCTGAGTC---TGCAACTTTG------------------TCTTATCAATCGCTGGCAACAGGCG--------ATGG--GGCCAAAGTTTGAGGCTGG---GAGGCGGCAACCTGACACTGGG-----ATG-CTAATCAG-CGC--TTCTC-GCGGCCGGAGAAGCGTGAGAA--G--TCACGCGACTCCTC----TTG-------------------------GGG------AAATTGAAATTGATTTGGTTTCGGAATGCCG-------CAATTGACGACGG--CTCCTCTAAT
droFic1 scf7180000453948:1267189-1267519 + AAAATGCTGGCCCTGTTCTACTTTGCCATTCCCGTGGGATCCGGTCTGGGGTGAGTGTGTGCATCTC----GACATTGTGCC---T--GGCCAATGTCCAGATCAATGATCCGTAAACAA---------CT---CGGGAG---GATGGCC--TCTTATCAGTCCATCCAGTCTGCC-GCTGA---------GACTTTGTTGTCCC--------TCGCCTTATCAACCGCTGGCAACAGGCG--------ATGCGAGGTCGAAGATTGCGGCTGG----A------------------GG-----ATG-ATAATCAG-CAC--TTCTC-GGTGGC---CGAGCGTGAGAAGAG--TCACGTGACTCGCC----T----------------------------CC-----AGAATTGAAATTGATTTACTTTTGGAATGCCG-------CAATTGACG------G--CTCTAAT
droEle1 scf7180000491107:1033067-1033377 + AAGATGCTGGCGCTGTTCTATTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGAGCACT---ACCTCCACTTTG--CC---C--GGGCAATGTCCAGATCAATGATCTGTAAACAA---------TC---CGGGAG---GG---------TTATCATC------CGTCTGCG-GCTCC---------GACTTTGTAGTCG-----------TTCTTATCAACCGCTGGCAACAGGCG--------ATGCG-GGCCAAAGTTTGAGGCT-------------------------GC-----TTG-CTAATCAG-TAA--TTCTC-ACTGGC---GAAGCGTGAGAAGAG--TCACGTGACTCTG-----C---------------------------GGG------AAATTGAAATTGATTTACTTTGAGAATGCCA-------CAATTGACA----CGG--CTCTAAT
droRho1 scf7180000779911:74186-74499 - AAGATGCTGGCAGTGTTCTACTTTGCCATACCCGTGGGATCTGGCCTGGGGTGAGTGTTTAGC--TT----GACATTG--CC------GTCCAATGTTCAGATCAATGATCTGTAAACAA---------TC---CGGGAGGAGGATGGGC--TCTTATCACT------GGTCTGCC-GCTCC---------GTCTTTTTAG------------TCTTCTTATCAACCGCTGGCAACATGCG--------ATGCG-GGCCAAAGTTTGAGGCT-------------------------GC-----TTG-TTAATCAG-TAA--TTCTC-ACTGGC---GAAGCGTGAGAGAAG--TCACGTGACTCTG-----C---------------------------TGG------AAATTGAGATTGATTTAATTTTGGAATTCCA-------CAATTGACG------G--CCGTAAT
droBia1 scf7180000301506:2968362-2968681 + AAGATGCTGGCACTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTGCAGC--CA----AGCATTG--CCAG-T--GGCCAATGTCCAGATCAACGATCTGCAAACAA---------TC---CGGGAG---GATGGGC--TCTTATCAGG------GGTCTGCG-TCTGCGTCGCTGTCTACTTTGTTG------------TCGCCCTATCAACAGCTGGCAACAGGCG--------GTGGA-GGCCGAAGGTTGAGGCTG------------------------GGGTGA-TCG-GTAATCAG-TAG--CTCTC-CCCGCT---GAAGCGTGAGAAGAG--TCACGTGACTCTT-----C---------------------------TGT------AAATTGAAATTGATTTA--------ATGCTC-------TAATTGACG------A--CTCTAAT
droTak1 scf7180000415795:537180-537493 - AAGATGCTGGCTCTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTGCAGC--TAGT--TCTATTG--CC------GGTCAATGTCCAGATCAATGATCTATTAGCAA---------TC---CGGGAG---GATGGGC--TCTTATCATC------GGTCTGC----------------GACTTTGTTGTC----------TTGCCTTATCAACTGCTGGCAACAGGCG--------ATGGA-GGCCAAAGTTTGAGGCTGT---CT------------------GG-----ATG-ATAATCAG-TAA--TTCTC-ACTGCT---GAAGCGTGAGAAGAG--TCACGTGACTTTTG----T---------------------------TGT------AAATTGAAATTGATTTACTTTTGGAATGCCG-------CAATTGACG------A--CTCTAAT
droEug1 scf7180000409672:926389-926704 + AAGATGCTGGCACTTTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTTCAAT--TC----GACATTG--CC------GACCAATGTCCAGATCAATGATCTGTAAACAA---------TC---CGGGAG---GATGGGCTTTCTTATCAAC------CGTCTGTG-GTAGT---------GACTTTGTAT------------TCGTCTTATCAACCGCTGGCAACAGCCG--------ATGGG-GGCCAAAGTTTGAGGCTG-----C------------------GG-----ATG-ATAATCAG-TAA--TTCTCTACTGGT---GAAGCGTGAGAAGAGTGTCACGTGTCTT-------G---------------------------TGT------ATATTAAAATTGATTTCTTTTTGGAATGCCA-------CAATTGACG------G--CTCTAAT
dm3 chr2R:12019355-12019668 + AAGATGCTGGCACTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTTCCCCTCTT----GACATTG--CC------GGCCAATGTCCAGGTCAATGATCA----ACAG---------TC---CGGGAG---GATGGGT--TCTTATCATC------CGTCTACG-AAT---------------------------------GCGCCTTATCATCTGCTGGTAACAGGCG--------ATGGG-GGCCAAAGTTTGAGGA-------C------------------GG-----TTG-ATAATCAG-CAA--TACCC-ACTGCTGGCGAAGCGTGAGAAGTG--ACACGTGACTGTATGCTTT---------------------------TGTAAATTGAAATTGAAATTGATTTACTTTTGGAATGCCGA------CAATTGAAG------GCTCTCTAAT
droSim2 2r:12689388-12689698 + dsi_6564 AAGATGCTGGCACTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTACCCCTCTT----GACATTG--CC------GGCCAATGTCCAGGTCAATGATCA----ACAG---------TC---CGGGAG---GATGGGC--CCTTATCATC------CGTCTACG-AAT---------------------------------GCGCCTTATCATCTGCCGGCAACAGGCG--------ATGGG-GGCCAAAGTTTGAGGA-------C------------------GG-----ATG-ATAATCAG-CAA--TTTTC-ACTGGC---GAAGCGTGAGAAGAG--ACACGTGACTGTATGCTTT---------------------------TGTAAATTGGAATTGAAATTGATTTACTTTTGGAATGCCGA------CAATTGAAG------GTTCTCTAAT
droSec2 scaffold_1:9514772-9515082 + AAGATGCTGGCACTGTTCTACTTTGCCATACCTGTGGGATCCGGTCTGGGGTGAGTGTACCCCTCTT----GACATTG--CC------GGCCAATGTCCAGGTCAATGATCA----ACAG---------TC---CGGGAG---GATGGGC--CCTTATCATC------CGTCTACG-AAT---------------------------------GCGCCTTATCATCTGCCGGCAACAGGCG--------ATGGG-GGCCAAAGTTTGAGGA-------C------------------GG-----ATG-ATAATCAG-CAA--TTTTC-ACTGGC---GAAGCGTGAGAGGAG--ACACGTGACTGCATGCTTT---------------------------TGTAAATTGGAATTGAAATTGATTTACTTTTGGAATGCCGA------CAATTGAAG------GTTCTCTAAT
droYak3 2R:16963735-16964047 - AAGATGCTGGCACTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTTCCGC--TC----GACATTG--CC------GGCCAATGTCCAGGTCAATGATCA----ACAG---------TC---CGGGAG---GATGGGC--TCTTATCATT------CGTCTACG-AATCC---------GTCTTTGTTT------------GCGCCTTATCAGGTGCTGGCAACAGGCG--------TTGGG-TTCCAAAGTTTGAGGA-------C------------------AG-----ATG-ATAATCAG-CAA--TTCTC-GCTGGC---GAAGCGTGAGAAGAG--ACACGTGACTCTTTACTTT---------------------------TGT------AAATTGAAATTGATTTATTTTTGGAATGCCGA------CAATTGATG------G--CTCTAAT
droEre2 scaffold_4845:13838112-13838425 - AAGATGCTGGCACTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTTCCGC--TC----GAGATTG--TC------GGCCAATGTCCAGGTCAATGATCA----ACAG---------TC---CGGGAG---GATCGGC--TCTTATCATC------CGTCTACG-GATCC---------GACTTTGTTT------------GCGCCTTATCATGCGCTGGCAACAGGCG--------ATGCG-GGCCAAAGTTTGAGGA-------C------------------GG-----ATG-ATAATCAGTCAA--TTCTC-ACTGGT---GAAGCGTGAGAAGAG--ACACGTGACTCCTTACTTT---------------------------TGT------AAATTGAAATTGATTTATTTTTGGATTGCCGA------CAATTGAAG------G--CTCTAAT
dp5 3:18640025-18640370 + AAGATGCTGGCGATGTTCTACTTTGCCATTCCCGTCGGCTCCGGTATGGGGTAAGT----------------------------------------------TCTATGACCC----ACAGAAGCGGCAGTA---ACGGTA---GCTGGAAAGTCTTATCAGTGGAT--CGTCTGGGTGTTGCGTC---TTCGACTTTGTCACTCATCGAGAATC--CGTTATCAGCTGCTGACAACAGCAG--------ATCGG-GTGCAAAGTTTGTC-----TTGGG-GCTCGA-C-T--CAAGGGG-----ATG-C--------------TCTA-ATCAGC---GTAGCGTGAGAAAAG--TCACGTGACTTCACC----CGGATCACCTTCAATTAAAAGTGGAACTGGAAACTGGAATTGAAATTGATTTACTTTTGGAACGAAGA-------GATGGCT-----TGG--CCTTAAT
droPer2 scaffold_34:587020-587365 + AAGATGCTGGCGATGTTCTACTTTGCCATTCCCGTCGGCTCCGGTATGGGGTAAGT----------------------------------------------TCTATGACCC----ACAGAAGCGGCAGTA---ACGGTA---GCTGGAAAGTCTTATCAGTGGAT--CGTCTGGGTGTTGCGTC---TTCGACTTTGTCACTCATCGAGAATC--CGTTATCAGCTGCTGACAACAGCAG--------ATCGG-GTGCAAAGTTTGTC-----TTGGG-GCTCGA-C-T--CAAGGGG-----ATG-C--------------TCTA-ATCAGC---GTAGCGTGAGAAAAG--TCACGTGACTTCACC----CGGATCACCTTCAATTAAAAGTGGAACTGGAAACTGGAATTGAAATTGATTTACTTTTGGAACGAAGA-------GATGGCT-----TGG--CCTTAAT
droWil2 scf2_1100000004513:4235657-4235712 + AAAATGTTGGCCATGTTCTATTTTGCTATACCCGTCGGTTCCGGTTTGGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:17498932-17498986 + AAAATGCTGGCAATGTTCTACTTTGCCATACCCGTTGGCTCTGGTCTGGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:10517173-10517228 - AAAATGTTGGCGCTCTTCTATTTTGCCATACCAGTGGGCTCTGGACTTGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:17000096-17000151 + AAAATGCTGGCAATGTTCTACTTTGCCATACCCGTTGGTTCTGGTTTGGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AAGATGCTGGCGCTGTTCTACTTCGCCATTCCGGTGGGATCCGGCCTGGGGTGAGTGTC--------------------------------------------CAAAGATC-------AG---------TC---CGGCA----GATGGGG--TCTTATCGCC------GGTCTG---------------------------------------GCCGCTTATCAGGC---GGCAGATGCTA--------ATG-G-GGCCAAAGGCT-----------------AGA-------------CTCT-TCGCGAAATCAG-TAC--C----------A---GAAGCGTGAGAAGCA--TCACGAGACTCCGG----C---------------------------TGG------CAATTGATATTGGATTTCGTTTGGAATGCCGCTGGTGGCAATTGGTG------G--CTCTAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGGCAATTGGTG------G--CTCT...2111.001010000
.................CTACTTCGCCATTCCGGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................TCTACTTCGCCATTCCGGTGGGATCCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000001
....................CTTCGCCATTCCGGTGGGATCCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.........................................................TC--------------------------------------------CAAAGATC-------AG---------TC---CGGCA----GATGGG...................................................................................................................................................................................................................................................................................................................................2511.001000001
.................CTACTTCGCCATTCCGGTGGGATCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
droBip1
AAGATGCTGGCGATGTTCTACTTTGCCATTCCCGTGGGATCCGGTCTGGGGTGAGTGTACAAG--TG----GA----------------------GTCC-GACCAAAGATCA-------G---------TTCGCCG-CCA---GATGAGC--TCTTATCACC--AGCAGGTCTG---------------------------------------GCAGCTTATC-------------AGGCGATATGCTAATGG--GGGCTAAGTTCACAGCTGA----AGGCTAGA-------------GTCTCTTC-GAAATCAG-TATCACAATC-TCTGAA---GAAGCGTGAGAAGCA--TCACGAGACTCCAGCCTTC---------------------------CAG------CAATTGATATTGGGATTCGTTTGGAATGCCG-------CAATTGGTG------G--CTTTAATSizeHit CountTotal NormTotal
No Reads
droKik1
AGGATGCTAGCCCTCTTCTATTTTGCCATTCCCGTGGGATCCGGTCTGGGGTAAGTCTTACA---AA----GACATTG--CCATCTGGGATCAATGTTCAGATCGGTGATCAGCAAAGCA---------TC---CG-----------GGC--TCTTATCTTG------CGTCTGAT-TCTGAGTC---TGCAACTTTG------------------TCTTATCAATCGCTGGCAACAGGCG--------ATGG--GGCCAAAGTTTGAGGCTGG---GAGGCGGCAACCTGACACTGGG-----ATG-CTAATCAG-CGC--TTCTC-GCGGCCGGAGAAGCGTGAGAA--G--TCACGCGACTCCTC----TTG-------------------------GGG------AAATTGAAATTGATTTGGTTTCGGAATGCCG-------CAATTGACGACGG--CTCCTCTAATSizeHit CountTotal NormTotal
No Reads
droFic1
AAAATGCTGGCCCTGTTCTACTTTGCCATTCCCGTGGGATCCGGTCTGGGGTGAGTGTGTGCATCTC----GACATTGTGCC---T--GGCCAATGTCCAGATCAATGATCCGTAAACAA---------CT---CGGGAG---GATGGCC--TCTTATCAGTCCATCCAGTCTGCC-GCTGA---------GACTTTGTTGTCCC--------TCGCCTTATCAACCGCTGGCAACAGGCG--------ATGCGAGGTCGAAGATTGCGGCTGG----A------------------GG-----ATG-ATAATCAG-CAC--TTCTC-GGTGGC---CGAGCGTGAGAAGAG--TCACGTGACTCGCC----T----------------------------CC-----AGAATTGAAATTGATTTACTTTTGGAATGCCG-------CAATTGACG------G--CTCTAATSizeHit CountTotal NormTotal
No Reads
droEle1
AAGATGCTGGCGCTGTTCTATTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGAGCACT---ACCTCCACTTTG--CC---C--GGGCAATGTCCAGATCAATGATCTGTAAACAA---------TC---CGGGAG---GG---------TTATCATC------CGTCTGCG-GCTCC---------GACTTTGTAGTCG-----------TTCTTATCAACCGCTGGCAACAGGCG--------ATGCG-GGCCAAAGTTTGAGGCT-------------------------GC-----TTG-CTAATCAG-TAA--TTCTC-ACTGGC---GAAGCGTGAGAAGAG--TCACGTGACTCTG-----C---------------------------GGG------AAATTGAAATTGATTTACTTTGAGAATGCCA-------CAATTGACA----CGG--CTCTAATSizeHit CountTotal NormTotal
No Reads
droRho1
AAGATGCTGGCAGTGTTCTACTTTGCCATACCCGTGGGATCTGGCCTGGGGTGAGTGTTTAGC--TT----GACATTG--CC------GTCCAATGTTCAGATCAATGATCTGTAAACAA---------TC---CGGGAGGAGGATGGGC--TCTTATCACT------GGTCTGCC-GCTCC---------GTCTTTTTAG------------TCTTCTTATCAACCGCTGGCAACATGCG--------ATGCG-GGCCAAAGTTTGAGGCT-------------------------GC-----TTG-TTAATCAG-TAA--TTCTC-ACTGGC---GAAGCGTGAGAGAAG--TCACGTGACTCTG-----C---------------------------TGG------AAATTGAGATTGATTTAATTTTGGAATTCCA-------CAATTGACG------G--CCGTAATSizeHit CountTotal NormTotal
No Reads
droBia1
AAGATGCTGGCACTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTGCAGC--CA----AGCATTG--CCAG-T--GGCCAATGTCCAGATCAACGATCTGCAAACAA---------TC---CGGGAG---GATGGGC--TCTTATCAGG------GGTCTGCG-TCTGCGTCGCTGTCTACTTTGTTG------------TCGCCCTATCAACAGCTGGCAACAGGCG--------GTGGA-GGCCGAAGGTTGAGGCTG------------------------GGGTGA-TCG-GTAATCAG-TAG--CTCTC-CCCGCT---GAAGCGTGAGAAGAG--TCACGTGACTCTT-----C---------------------------TGT------AAATTGAAATTGATTTA--------ATGCTC-------TAATTGACG------A--CTCTAATSizeHit CountTotal NormTotal
No Reads
droTak1
AAGATGCTGGCTCTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTGCAGC--TAGT--TCTATTG--CC------GGTCAATGTCCAGATCAATGATCTATTAGCAA---------TC---CGGGAG---GATGGGC--TCTTATCATC------GGTCTGC----------------GACTTTGTTGTC----------TTGCCTTATCAACTGCTGGCAACAGGCG--------ATGGA-GGCCAAAGTTTGAGGCTGT---CT------------------GG-----ATG-ATAATCAG-TAA--TTCTC-ACTGCT---GAAGCGTGAGAAGAG--TCACGTGACTTTTG----T---------------------------TGT------AAATTGAAATTGATTTACTTTTGGAATGCCG-------CAATTGACG------A--CTCTAATSizeHit CountTotal NormTotal
No Reads
droEug1
AAGATGCTGGCACTTTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTTCAAT--TC----GACATTG--CC------GACCAATGTCCAGATCAATGATCTGTAAACAA---------TC---CGGGAG---GATGGGCTTTCTTATCAAC------CGTCTGTG-GTAGT---------GACTTTGTAT------------TCGTCTTATCAACCGCTGGCAACAGCCG--------ATGGG-GGCCAAAGTTTGAGGCTG-----C------------------GG-----ATG-ATAATCAG-TAA--TTCTCTACTGGT---GAAGCGTGAGAAGAGTGTCACGTGTCTT-------G---------------------------TGT------ATATTAAAATTGATTTCTTTTTGGAATGCCA-------CAATTGACG------G--CTCTAATSizeHit CountTotal NormTotal
No Reads
dm3
AAGATGCTGGCACTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTTCCCCTCTT----GACATTG--CC------GGCCAATGTCCAGGTCAATGATCA----ACAG---------TC---CGGGAG---GATGGGT--TCTTATCATC------CGTCTACG-AAT---------------------------------GCGCCTTATCATCTGCTGGTAACAGGCG--------ATGGG-GGCCAAAGTTTGAGGA-------C------------------GG-----TTG-ATAATCAG-CAA--TACCC-ACTGCTGGCGAAGCGTGAGAAGTG--ACACGTGACTGTATGCTTT---------------------------TGTAAATTGAAATTGAAATTGATTTACTTTTGGAATGCCGA------CAATTGAAG------GCTCTCTAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................TGGG-GGCCAAAGTTTGAGGA-------C------------------GG-----TTG-....................................................................................................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CGTGGGATCCGGTCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000100100000000010000000
...............................CCGTGGGATCCGGTCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................................................................................................................................................................................................................................AGAAGTG--ACACGTGACTG...........................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................GAAGTG--ACACGTGACTGTA.........................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.......................................................................................................................................................................................................................................GTAACAGGCG--------ATGGG-GGCCAAAG.................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................G--ACACGTGACTGTATGCTTT---------------------------TGTAAATT................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATTG--CC------GGCCAATGTCCAG...................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CAATGATCA----ACAG---------TC---CGGGA.............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................ACATTG--CC------GGCCAATGTC......................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTTGGAATGCCGA------CAA......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CGTGAGAAGTG--ACACGTGAC.............................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................ACAGGCG--------ATGGG-GGCCAAAGT................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....TGCTGGCACTGTTCTACTTTGCCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCCATACCCGTGGGATCCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GCTGGCGAAGCGTGAGAAGTG--A.....................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................................G-AAT---------------------------------GCGCCTTATCATCTGCT..................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TCTACTTTGCCATACCCGTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TGAGAAGTG--ACACGTGACTGTATGCT.....................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GGCG--------ATGGG-GGCCAAAGTT...............................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CCATACCCGTGGGATCCGGTCTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATACCCGTGGGATCCGGTCTGGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............TTCTACTTTGCCATACCCGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTTTGGAATGCCGA------CAATT....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GTGGGATCCGGTCTGGGGTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TATGCTTT---------------------------TGTAAATTGAAATTGA........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................T--TCTTATCATC------CGTCTACG-AAT---------------------------------GCGCC..............................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GTTTGAGGA-------C------------------GG-----TTG-ATAATC..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.......TGGCACTGTTCTACTTTGCCATACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCCGGTCTGGGGTGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGAATGCCGA------CAATTGAAG------GC........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................GTG--ACACGTGACTGTATGCTTT---------------------------T.......................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GATGCTGGCACTGTTCTACTTTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TGAGGA-------C------------------GG-----TTG-ATAATCAG-CAA--TACC..................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.................................................GGTGAGTGTTCCCCTCTT----GACATT...........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGCTGGCACTGTTCTACTTTGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GGGATCCGGTCTGGGGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AAGTG--ACACGTGACTGTATGCT.....................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CAAAGTTTGAGGA-------C------------------GG-----TTG-A...................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGCCGA------CAATTGAAG------GCTCTCT...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTTTTGGAATGCCGA------CAATTGA..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................AAAGTTTGAGGA-------C------------------GG-----TTG-ATAATC..............................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................................................................................................................TCTGCTGGTAACAGGCG--------AT.............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TACCCGTGGGATCCGGTCTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................AGTG--ACACGTGACTGTATG.......................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................AAAGTTTGAGGA-------C------------------GG-----TTG-ATAA................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.....................TTTGCCATACCCGTGGGATCCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................ATCTGCTGGTAACAGGCG--------AT.............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................ACCCGTGGGATCCGGTCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AACAGGCG--------ATGGG-GGCCAAAGT................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATTG--CC------GGCCAATGTCCAGG..................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AAGATGCTGGCACTGTTCTACTTTGCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................AG---------TC---CGGGAG---GATGGGG--G...............................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAATTGAAATTGAT.................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droSim2
AAGATGCTGGCACTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTACCCCTCTT----GACATTG--CC------GGCCAATGTCCAGGTCAATGATCA----ACAG---------TC---CGGGAG---GATGGGC--CCTTATCATC------CGTCTACG-AAT---------------------------------GCGCCTTATCATCTGCCGGCAACAGGCG--------ATGGG-GGCCAAAGTTTGAGGA-------C------------------GG-----ATG-ATAATCAG-CAA--TTTTC-ACTGGC---GAAGCGTGAGAAGAG--ACACGTGACTGTATGCTTT---------------------------TGTAAATTGGAATTGAAATTGATTTACTTTTGGAATGCCGA------CAATTGAAG------GTTCTCTAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................AGAG--ACACGTGACTGTATGCT.....................................................................................................2111.00110000000000000000
..............GTTCTACTTTGCCATACCCGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.......................................................................................................................................................................................................................................................................TTTGAGGA-------C------------------GG-----ATG-ATAATCAG-CG.........................................................................................................................................................2411.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACTTTTGGAATGCCGA------CAATT....................2611.00100000000000100000
.......................................................................................................................................................................................................................................................................TTTGAGGA-------C------------------GG-----ATG-ATAATC..............................................................................................................................................................2011.00101000000000000000
.AGATGCTGGCACTGTTCTACTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
...ATGCTGGCACTGTTCTACTTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..............GTTCTACTTTGCCATACCCGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
......................................................................................................................AG---------TC---CGGGAG---GATGGGC--CCTTAT..........................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
droSec2
AAGATGCTGGCACTGTTCTACTTTGCCATACCTGTGGGATCCGGTCTGGGGTGAGTGTACCCCTCTT----GACATTG--CC------GGCCAATGTCCAGGTCAATGATCA----ACAG---------TC---CGGGAG---GATGGGC--CCTTATCATC------CGTCTACG-AAT---------------------------------GCGCCTTATCATCTGCCGGCAACAGGCG--------ATGGG-GGCCAAAGTTTGAGGA-------C------------------GG-----ATG-ATAATCAG-CAA--TTTTC-ACTGGC---GAAGCGTGAGAGGAG--ACACGTGACTGCATGCTTT---------------------------TGTAAATTGGAATTGAAATTGATTTACTTTTGGAATGCCGA------CAATTGAAG------GTTCTCTAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................ACTTTGCCATACCTGTGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
............................TACCTGTGGGATCCGGTCTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...ATGCTGGCACTGTTCTACTTTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.................................................................................................................................TC---CGGGAG---GATGGGC--CCTTATCATC------CGTC............................................................................................................................................................................................................................................................................................................2911.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCGA------CAATTGAAG------GTTC......2111.0010010
..............GTTCTACTTTGCCATACCTGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
droYak3
AAGATGCTGGCACTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTTCCGC--TC----GACATTG--CC------GGCCAATGTCCAGGTCAATGATCA----ACAG---------TC---CGGGAG---GATGGGC--TCTTATCATT------CGTCTACG-AATCC---------GTCTTTGTTT------------GCGCCTTATCAGGTGCTGGCAACAGGCG--------TTGGG-TTCCAAAGTTTGAGGA-------C------------------AG-----ATG-ATAATCAG-CAA--TTCTC-GCTGGC---GAAGCGTGAGAAGAG--ACACGTGACTCTTTACTTT---------------------------TGT------AAATTGAAATTGATTTATTTTTGGAATGCCGA------CAATTGATG------G--CTCTAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATTTTTGGAATGCCGA------CAATT....................2611.00101000000000
...........ACTGTTCTACTTTGCCATACCCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
................................................................................................................................................ATGGGC--TCTTATCATT------CGTCTACG-.......................................................................................................................................................................................................................................................................................................2411.00101000000000
..........................CATACCCGTGGGATCCGGTCTGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000100000
.......................................................................................................................................................................................................................GCCTTATCAGGTGCTGGCAACAGG.........................................................................................................................................................................................................................................2411.00101000000000
.................CTACTTTGCCATACCCGTGGGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
....................................................................................................................ACAG---------TC---CGGGAG---GATGGGC--TCTT............................................................................................................................................................................................................................................................................................................................2311.00100000010000
...........................................................................................................................................................................CTACG-AATCC---------GTCTTTGTTT------------GC.................................................................................................................................................................................................................................................................2211.00100000010000
...........................................................................................................................................................................CTACG-AATCC---------GTCTTTGTT................................................................................................................................................................................................................................................................................1911.00100000010000
....................................................................................................................ACAG---------TC---CGGGAG---GATGGGC--TCTTA...........................................................................................................................................................................................................................................................................................................................2411.00100000010000
.................................................................................................................................................TGGGC--TCTTATCATT------CGT.............................................................................................................................................................................................................................................................................................................1811.00100010000000
droEre2
AAGATGCTGGCACTGTTCTACTTTGCCATACCCGTGGGATCCGGTCTGGGGTGAGTGTTCCGC--TC----GAGATTG--TC------GGCCAATGTCCAGGTCAATGATCA----ACAG---------TC---CGGGAG---GATCGGC--TCTTATCATC------CGTCTACG-GATCC---------GACTTTGTTT------------GCGCCTTATCATGCGCTGGCAACAGGCG--------ATGCG-GGCCAAAGTTTGAGGA-------C------------------GG-----ATG-ATAATCAGTCAA--TTCTC-ACTGGT---GAAGCGTGAGAAGAG--ACACGTGACTCCTTACTTT---------------------------TGT------AAATTGAAATTGATTTATTTTTGGATTGCCGA------CAATTGAAG------G--CTCTAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................CTTATCATC------CGTCTACG-GA.....................................................................................................................................................................................................................................................................................................1911.0010000010
dp5
AAGATGCTGGCGATGTTCTACTTTGCCATTCCCGTCGGCTCCGGTATGGGGTAAGT----------------------------------------------TCTATGACCC----ACAGAAGCGGCAGTA---ACGGTA---GCTGGAAAGTCTTATCAGTGGAT--CGTCTGGGTGTTGCGTC---TTCGACTTTGTCACTCATCGAGAATC--CGTTATCAGCTGCTGACAACAGCAG--------ATCGG-GTGCAAAGTTTGTC-----TTGGG-GCTCGA-C-T--CAAGGGG-----ATG-C--------------TCTA-ATCAGC---GTAGCGTGAGAAAAG--TCACGTGACTTCACC----CGGATCACCTTCAATTAAAAGTGGAACTGGAAACTGGAATTGAAATTGATTTACTTTTGGAACGAAGA-------GATGGCT-----TGG--CCTTAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................CTACTTTGCCATTCCCGTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............GTTCTACTTTGCCATTCCCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................ACTTCACC----CGGATCACCTTC.......................................................................................2011.0010100000000
..GATGCTGGCGATGTTCTACTTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................GTCGGCTCCGGTATGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010100000000
droPer2
AAGATGCTGGCGATGTTCTACTTTGCCATTCCCGTCGGCTCCGGTATGGGGTAAGT----------------------------------------------TCTATGACCC----ACAGAAGCGGCAGTA---ACGGTA---GCTGGAAAGTCTTATCAGTGGAT--CGTCTGGGTGTTGCGTC---TTCGACTTTGTCACTCATCGAGAATC--CGTTATCAGCTGCTGACAACAGCAG--------ATCGG-GTGCAAAGTTTGTC-----TTGGG-GCTCGA-C-T--CAAGGGG-----ATG-C--------------TCTA-ATCAGC---GTAGCGTGAGAAAAG--TCACGTGACTTCACC----CGGATCACCTTCAATTAAAAGTGGAACTGGAAACTGGAATTGAAATTGATTTACTTTTGGAACGAAGA-------GATGGCT-----TGG--CCTTAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................GCCATTCCCGTCGGCTCCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..................TACTTTGCCATTCCCGTCGGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................CTACTTTGCCATTCCCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
....................................................................................................................................................................................................................................................................................GGG-GCTCGA-C-T--CAAGGGG-----A.......................................................................................................................................................................1911.001010000
droWil2
AAAATGTTGGCCATGTTCTATTTTGCTATACCCGTCGGTTCCGGTTTGGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................ATACCCGTCGGTTCCGGTTTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200
.....................TTTGCTATACCCGTCGGTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...................ATTTTGCTATACCCGTCGGTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
droVir3
AAAATGCTGGCAATGTTCTACTTTGCCATACCCGTTGGCTCTGGTCTGGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................ATACCCGTTGGCTCTGGTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000001000100000000000000000000000000
...........................ATACCCGTTGGCTCTGGTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002100000000000000000000000000000000000000000000000000000000000010
...........AATGTTCTACTTTGCCATACCCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000100000000000000000000000000000000100000000000000000000000000
..........................CATACCCGTTGGCTCTGGTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............GTTCTACTTTGCCATACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
........................GCCATACCCGTTGGCTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
................................CGTTGGCTCTGGTCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000100000000000000000000000000000000000000000000000
..........................CATACCCGTTGGCTCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
............ATGTTCTACTTTGCCATACCCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
...ATGCTGGCAATGTTCTACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
AAAATGCTGGCAATGTTCTACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000010000000000000000000000000
.........................CCATACCCGTTGGCTCTGGTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...........AATGTTCTACTTTGCCATACCCGTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......................TTGCCATACCCGTTGGCTCTGGTCTGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000001000000000000000000000000000000000000000000000000
...........AATGTTCTACTTTGCCATACCCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
AAAATGTTGGCGCTCTTCTATTTTGCCATACCAGTGGGCTCTGGACTTGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................ATACCAGTGGGCTCTGGACTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
AAAATGCTGGCAATGTTCTACTTTGCCATACCCGTTGGTTCTGGTTTGGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:30 AM