ID:

dan_2009

 Coordinate:

scaffold_13266:14480833-14480983 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.5 -24.4 -24.4

Flybase annnotation

CDS [Dana\GF13486-cds]; exon [dana_GLEANR_13499:2]; intron [Dana\GF13486-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo-
mature
  1. scaffold_289:1790-1810 +
  2. scaffold_445:614-634 +
  3. scaffold_8186:8777-8797 +
  4. scaffold_8743:172-192 +
  5. scaffold_9485:2803-2823 +
  6. scaffold_9501:1797-1817 +
  7. scaffold_12926:284773-284793 +
  8. scaffold_13010:102862-102882 +
  9. scaffold_13010:347632-347652 +
  10. scaffold_13034:380392-380412 +
  11. scaffold_13034:612608-612628 +
  12. scaffold_13034:795538-795558 +
  13. scaffold_13088:476998-477018 +
  14. scaffold_13111:324909-324929 +
  15. scaffold_13269:51183-51203 +
  16. scaffold_13337:2249917-2249937 +
  17. scaffold_13417:2420811-2420831 +
  18. scaffold_13417:5335987-5336007 +
  19. scaffold_13417:5340132-5340152 +
  20. scaffold_13767:1296615-1296635 +
  21. scaffold_12398:1590-1610 +
  22. scaffold_12405:11428-11448 +
  23. scaffold_12911:209833-209853 +
  24. scaffold_12911:1973537-1973557 +
  25. scaffold_12911:1974365-1974385 +
  26. scaffold_12911:4297769-4297789 +
  27. scaffold_12911:4448757-4448777 +
  28. scaffold_13045:361296-361316 +
  29. scaffold_13099:2539268-2539288 +
  30. scaffold_13137:299742-299762 +
  31. scaffold_13228:264859-264879 +
  32. scaffold_13228:366499-366519 +
  33. scaffold_13250:3435669-3435689 +
  34. scaffold_13260:1732183-1732203 +
  35. scaffold_13261:69442-69462 +
  36. dan_2009  scaffold_13266:14480947-14480967 +
  37. scaffold_13337:23226144-23226164 +
  38. scaffold_13417:1756432-1756452 +
  39. scaffold_13492:1250-1270 +
  40. scaffold_13499:384645-384665 +
  41. scaffold_1054:134-154 -
  42. scaffold_7024:666-686 -
  43. scaffold_8739:823-843 -
  44. scaffold_10513:98869-98889 -
  45. scaffold_10513:102131-102151 -
  46. scaffold_11878:4683-4703 -
  47. scaffold_11878:7799-7819 -
  48. scaffold_12916:131751-131771 -
  49. scaffold_12926:182906-182926 -
  50. scaffold_12947:511099-511119 -
  51. scaffold_12984:253103-253123 -
  52. scaffold_13089:231209-231229 -
  53. scaffold_13099:706650-706670 -
  54. scaffold_13099:2140841-2140861 -
  55. scaffold_13230:2154471-2154491 -
  56. scaffold_13248:4406863-4406883 -
  57. scaffold_13266:19238261-19238281 -
  58. scaffold_13417:2045456-2045476 -
  59. scaffold_13417:6804537-6804557 -
  60. scaffold_13499:603390-603410 -
  61. scaffold_7286:2086-2106 +
  62. scaffold_8831:850-870 +
  63. scaffold_12905:185188-185208 +
  64. scaffold_12943:696680-696700 +
  65. scaffold_13043:99345-99365 +
  66. scaffold_13045:1449218-1449238 +
  67. scaffold_13099:339992-340012 +
  68. scaffold_13099:656460-656480 +
  69. scaffold_13099:3056082-3056102 +
  70. scaffold_13111:1345964-1345984 +
  71. scaffold_13137:314973-314993 +
  72. scaffold_13228:825512-825532 +
  73. scaffold_13250:3370806-3370826 +
  74. scaffold_13266:19794241-19794261 +
  75. scaffold_13266:19882296-19882316 +
  76. scaffold_13337:21619242-21619262 +
  77. scaffold_13339:1336681-1336701 +
  78. scaffold_13339:3469365-3469385 +
  79. dan_3050  scaffold_13340:12508402-12508422 +
  80. scaffold_13417:6215566-6215586 +
  81. scaffold_939:464-484 -
  82. scaffold_12943:3224966-3224986 -
  83. scaffold_12984:55675-55695 -
  84. scaffold_13070:36105-36125 -
  85. scaffold_13077:185491-185511 -
  86. scaffold_13099:616382-616402 -
  87. scaffold_13099:1340816-1340836 -
  88. scaffold_13099:2649088-2649108 -
  89. scaffold_13111:1027113-1027133 -
  90. scaffold_13185:15406-15426 -
  91. scaffold_13248:2317886-2317906 -
  92. scaffold_13250:2811060-2811080 -
  93. scaffold_13258:438540-438560 -
  94. scaffold_13260:2011225-2011245 -
  95. scaffold_13339:4473114-4473134 -
  96. scaffold_13417:3229075-3229095 -
  97. scaffold_13417:5067794-5067814 -
  98. scaffold_13469:570006-570026 -
  99. scaffold_13470:6739-6759 -
  100. scaffold_13770:517964-517984 -
  101. scaffold_7574:4403-4423 +
  102. scaffold_12599:8543-8563 +
  103. scaffold_12911:2868330-2868350 +
  104. scaffold_12913:19608-19628 +
  105. scaffold_12928:381540-381560 +
  106. scaffold_12947:25792-25812 +
  107. scaffold_12947:576185-576205 +
  108. scaffold_13043:380396-380416 +
  109. scaffold_13082:809928-809948 +
  110. scaffold_13099:1069513-1069533 +
  111. scaffold_13099:2528874-2528894 +
  112. scaffold_13230:2649399-2649419 +
  113. scaffold_13248:841556-841576 +
  114. scaffold_13266:19285293-19285313 +
  115. scaffold_13272:354693-354713 +
  116. scaffold_13280:1252553-1252573 +
  117. scaffold_13337:23289194-23289214 +
  118. scaffold_13417:1776270-1776290 +
  119. scaffold_13417:2986166-2986186 +
  120. scaffold_13770:381266-381286 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCAACCAATGGAAAGCGGATCTGGCCAGTATTGGGCAGTTTATCCCCAAGTAGGTATTGGTAGAAATATTGCTTGTAAGTTACATGGATTCAAATTTTAAAACCAATAAAATAAGACTTTAACATAACGAAATCTTATCTAATTTAAGGTTCAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTCAGTCGCAGTCCGCTAGGTGGCGCCACCCATCTTATTTTATT
**************************************************.....(((((((.(((((.(((((((((...)))).))...))))))))...)))))))......................(((((((.......)))))))..........((.....(((((((((......))))))))).....)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body		 V106
head
 V055
head
....................................................................................................................................................................AAAGCTAACTTCGGGCGGAGC.................................................................. 21 0 20 3.65 73 0 73 0 0 0 0
....................................................................................................................................................................AAAGCTAACTTCGGGCGGAGCCGA............................................................... 24 0 20 2.60 52 52 0 0 0 0 0
.....................................................................................................................................................................AAGCTAACTTCGGGCGGAGCC................................................................. 21 0 20 1.55 31 31 0 0 0 0 0
................................................................................................................................................................................................................TCAGTCGCAGTCCGCTAGGTGGCGC.................. 25 0 20 0.65 13 13 0 0 0 0 0
...............................................................................................................................................................................................................TGCAGTCGCAGTCCGCTAGGTGGC.................... 24 1 20 0.65 13 0 13 0 0 0 0
.......................................TTTATCCCCGGGTAGGTA.................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 1 0 0 0
.............................................................................................................................................................................TTCGGGCGGAGCCGAAGTTGATATACCC.................................................. 28 0 20 0.50 10 0 10 0 0 0 0
...........................................................................................................................................................................................................GCAGTTCAGTCGCAGTCCG............................. 19 0 20 0.20 4 4 0 0 0 0 0
.............................................................................................................................................................................TTCGGGCGGAGCCGAAGTTGATATACCCT................................................. 29 0 20 0.20 4 4 0 0 0 0 0
.................................................................................................................................................................................................................CAGTCGCAGTCCGCTAGGTGG..................... 21 0 20 0.15 3 0 2 0 1 0 0
..................................................................................................................................................................................................TATACCCTTGCAGTTCAGTCGC................................... 22 0 20 0.15 3 3 0 0 0 0 0
........................................................................................ATTCAGATTTTAAAACCAAAA.............................................................................................................................................. 21 2 7 0.14 1 0 0 1 0 0 0
...........GAACGCGGAACAGGCCAGTA............................................................................................................................................................................................................................ 20 3 7 0.14 1 1 0 0 0 0 0
...................................................................................................................................................................GAAAGCTAACTTCGGGCGGAGC.................................................................. 22 0 20 0.10 2 0 0 0 2 0 0
................................................................................................................................................................AAGGAAAGCTAACTTCGGGCG...................................................................... 21 0 20 0.10 2 0 0 0 0 0 2
...........GAACGCGGAACCGGCCAGT............................................................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 1 0
............AACGCGGAACAGGCCAGTA............................................................................................................................................................................................................................ 19 3 19 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................................................AGTCGCAGTCCGCTAGGTGGCGC.................. 23 0 20 0.05 1 0 0 1 0 0 0
..................................................................................................................................................................................................TATACCCTGGCAGTTCAGTCGCAGTCCGC............................ 29 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................AAGGAAAGCTAACTTCGGGCGGAGCCG................................................................ 27 0 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................................................................CAGTTCAGTAGCAGTCCGCT........................... 20 1 20 0.05 1 0 0 0 0 1 0
..............................................................................................................................................ATTGAAGGGTCCACAAGAAA......................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0
..................................................................................................................................................................................................TATTCCCTTGCAGTTCAGTCGCAGTCCGC............................ 29 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................TAACTTCGGGCGGAGCCGAAGTTGATA....................................................... 27 0 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................CAAGAAAGGAAAGCTAACTTC........................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................................................GCAGTCCGCTAGGTGGCGCCAC............... 22 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................GAAAACCAATAAAAGAAGA...................................................................................................................................... 19 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

AGGTTGGTTACCTTTCGCCTAGACCGGTCATAACCCGTCAAATAGGGGTTCATCCATAACCATCTTTATAACGAACATTCAATGTACCTAAGTTTAAAATTTTGGTTATTTTATTCTGAAATTGTATTGCTTTAGAATAGATTAAATTCCAAGTTGTTCTTTCCTTTCGATTGAAGCCCGCCTCGGCTTCAACTATATGGGAACGTCAAGTCAGCGTCAGGCGATCCACCGCGGTGGGTAGAATAAAATAA
**************************************************.....(((((((.(((((.(((((((((...)))).))...))))))))...)))))))......................(((((((.......)))))))..........((.....(((((((((......))))))))).....)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M058
embryo
 V055
head
 M044
female body
 V039
embryo
.................................................................................................................................................................................................................GTCAGCGTCAGGCGATCCACC..................... 21 0 20 0.40 8 8 0 0 0 0
................................................................................................................................................................................CCCGCCTCGGCTTCAACTATATGGGA................................................. 26 0 20 0.30 6 0 6 0 0 0
...........CTGTAGCCAAGACCGGTCATA........................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0
........................................................................................................GTTAGTTGATTCTGAAAGTG............................................................................................................................... 20 3 13 0.08 1 0 0 0 1 0
.........................................................................................AGGTTTAAAAGTTTGGTTATT............................................................................................................................................. 21 2 15 0.07 1 1 0 0 0 0
......................................................................................................................................................................................TCGGCTTCAACTATATGGGAACGTC............................................ 25 0 20 0.05 1 0 0 0 1 0
..................................................................................................TTTTTGGTTATTGTATTCT...................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 1
...........................................................................................................................................................................................................................GGCGATCCACCGCGGTGGGT............ 20 0 20 0.05 1 0 0 0 1 0
......................................................................................................................................................................................................GGGAACGTCAAGTCAGCGTC................................. 20 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:14480783-14481033 + dan_2009 TCCAACCAATG-GAAAG---CGGATCTGGCCAGTATTGGGCAGTTTATCCCCAAGTAGGTATTGG-------------------------------TA--GAAATATTGCTTGTAAGTTACA-------------------------------------------------------TGGA---------------------------------------------------TTC------AAATTT---------------------------------------------------------------------------------------------------------------------T-----------AAAACCAATAAAATAA-------------------------------------------------------------------------------------------------GACTTTAACATAACGAAATCTTATCTAATTTAAGGTTCAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTCAGT------CGCAGTCCG----------C---------TAGGTGG-CGC-----------------------CACCCA--TCTTATTTT----ATT
droBip1 scf7180000396715:16694-16888 + TCTGTCCAATA-CTCAA---CAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTACTTTTCTCGCCAATTTGGTGAATGTGGTAATCTGAATTGGTTGTGCAGTTTCTCATCCAAAATATA--------A-----------AAAATCAAAAAAAA---------------------------------------------------------------------------------------------------------------TTGAATTATTGATTCAATTAATGTTTAACAAGAAAGCAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGCTAAAA------CC-------------------------------------------------------------------------------------
droKik1 scf7180000301628:7744-7985 + TGAAA----------AG---C-----AGGCTGGTATTAACCAAATCAGCCAACACAAGGTGGCA-CCGTGAGA--------------AAATATCTT---------------------------------------------------------------------------------------------------------------------------------TGAACTAGTTTCAATTG-----ATAATTTTAAAATAATG---------------------------------------------------------------------------------------------------GG--CA-ATAAAA-------------------------------------------------TA------TTGAAATTA--------TTAAGAGTAGTA----------------GTAGTAGACCAAAAT--------------------------AAACAATAAACAAGAAAAG-AAGCTAACTTCGGC--ACGCCGAAGTTTGTATACCCTTGCAAATATTA------TT----TCA----------T---------TAAATT-----------------------T----TACCTA-TACTTATTAT----GTT
droFic1 scf7180000449015:848-1139 + TTTAAGCGGAA-AGAAG---AGGATTTA-------------------------------------------------------------------------------------AGGACA--GTATATGGGAGCCAGTTCTTGGGATACATTATT-----GATTCTAATGGTAGAATATGGAGTTAAATTGGTTAATAATTACAGAGTAGGGCTTTGGGAACTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAAGAT-----------------------------------------------------TTCATAGAACAAAAT----------------------------A-TATAAACAAGAAAGG-AAGCTAGCTTCGGC--AAGCCGAAGCTTATATACCCTTGCAGTCATCAAATATGTC-------G-----AACAAAACGCATAAAGGCTAGACAACATCGAAGCTAAGACGATTTTTCTATTCATTTTCCATATT----TTT
droEle1 scf7180000490370:2563-2770 - TTTACCCTGAT-CAAGG---TATGCG----------------------------------------------------------------------TAAATAAATAAGACTTGCAAAAA--A-------------------------------------------------------TGTA---------------------------------------------------TGT------GAATTT-------------------------------T-------------------------------------------------------------------------ATAAGCTACTGCG--CG-------------------------------------------------------------AAA------TATAAATAACATTTTGTGTAA--T-------------------------------------------------------TATA-TGAAAACAAGAAAGG--AGCAAACTTCGGC--AAGCCGAAGTTTATATACCCTTGCAGCTATTG------CA--------AGAATTAAAT---------ATTTTTGAAGACATTA-----------------------A--AATTATGATCT-ACTT
droRho1 scf7180000762630:45131-45349 - CA------ATG-GAAAGACAACGTTTTGGACAGTTTCAAGCAGATAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAACTGAGGGACTAGTTTGCGTT-------------------------------------------------------------------------GCAAACTTTTGAC--TG-------------------------------------------------------------AAA------TTATAATAACC---TCTGCAA--GGGTATCAAAAT---------AGAGAA---------AT--------------------AGCTAAAAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGAATACT------CT------G-CAAATTATAT-------------------A-----------------------CTCCAA--AATT--------ATTC
droBia1 scf7180000301527:8251-8471 + CCCAACGAACG-ACAAG---AGGGACGCGCAGCCAGAATGCAGTCT----------------------------------------------------------------------------------------------TAGTATAC--TGCTAATCAAATTTTAATGT-------------------------------------------------------TAAGATTCGT------AAACTT-------------------------------ATTATTAGTC----------------------------------------------------------TCAAAATAAA--------GAGAAGATTTAA-------------------------------------------------AATTAA--AAGCAA------AG-------------------------------TTAATA-----------------------------------AAACAAAAAACAAGAAAGG-AAGTTAACTTCGTC--AATCCAAACTTTGTATACCCTTGTAGTTATAA------GC-------AATAAT-----------------------------------------------------------C---AACTTTAGT
droTak1 scf7180000414479:56857-57101 - AGAGAAA----------------ATATGGTCAGACTGGGGCA-----------------------CGGATAGGGATTATTAATATTAAAATTTTTT---------------------------------------------------------------------------------------------------------------------------------TTATGTATACACACCTG-----ATCATATTAAAAATGAGG----------------------------------------------------------------------------------------TAAATTCTTGTC--AA-------------------------------------------------------------AAA------CCAAAG-----------------TTACATGCGGTTTTAA-------------------------------------------TTAAAAAACAAGAAAGG-AAGCTAGCGTCGGC--CAGCCGAAGCTTATATACCCTTGCAGATAATT------CCTA----T-TAATTTACAAATCGCAAAAATGGTA---------------------ATT----TTCCTA--TTATTTCTC----ATT
droEug1 scf7180000409111:41118-41191 - AATAATAT-----TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------CAACAAAATAATTAAAG-AAGCTAACTTCGGC--AAGCCAAAGTTTATATACCCCTGCAGCTTA-----------------------------------------------------------------------------------------------
dm3 chr2R:10132035-10132091 + TCCAACCAATG-GAAGG---CGGATCTGGTCAGCATCGGGCAGTTTATTCCAAAGTGGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:10835001-10835057 + TCCAACCAATG-GAAGG---CGGATCTGGTCAGCATCGGACAGTTTATTCCAAAGTGGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1:5681320-5681408 - GGCTTTTTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCAGATTT------TGGCA---------------------------------------------AGAACAAA---------------------------------GCTAACAGGAAGGG-AAATTAACTGCGAC--AAGCCGAAGTTTGTATGCCCTTGCAGT--------------------------------------------------------------------------------------------------
droYak3 2R:10068961-10069020 + TCCAACCAATG-GAAGG---CGGATCTGGTCAGCATTGGACAGTTTATTCCAAAGTGTGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------------------------------G
droEre2 scaffold_4845:15711597-15711749 - TCCAACCAATG-GAAGG---CGGATCTGGTCAGCATTGGACAGTTCATCCCAAAGTGTGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACATAGAC------AAATTT-------------------------------TTTAATCGGC----------------------------------------------------------TTCACAT-------------------------------------------------------------------------------------------------------------ATACATCCGATTTGAA---------TG---------AA-------------------------------------------------------------TACTACATATACTTTTATAAACATAA------AC-------AA------------------------------------------------------------TCTT---ATCTTATCT
dp5 3:17382729-17382786 + TCCAACCAGTG-GAAGG---CAGACCTGGCCAGCATTGGCCAGTTCATACCCAAGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------
droPer2 scaffold_3:5054154-5054228 - AAGGTCCATGA-AGTTG---AAAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------AAAGTCAATAAAATCA-------------------------------------------------------------------------------------------------GATTTAA-------------------------------------------------------------ATATAATTTGATTTACTTTGATGTCTA-----------------------------------------------------------------------------------------------A
droWil2 scf2_1100000004510:2021075-2021242 - ATTCAGAAACTTAACCA---CAAGCCAAGTCATTAACTAAAATGTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCATTTAATTTAAATTACA--------GAGAA------------------AACGA---TACATTTAACTATATATTGAT-------------------------------------------------------------------AAACTAGATTTAA-------------------------ACATAAAAT-ACCAAAG-AAGCTAACTTCGGC-TATGCCGAAGTTTATATACCCTTGCAGT--------------------------------------------------------------------------------------------------
droVir3 scaffold_12941:221526-221689 + AAGTCTGAGTG-AGAAG---AGTGCGT-----GTAATGGGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGC---------------------------------------------------------------------------------------------------------------------G-----------GAGGCCGAAAGAACAAGAT----------------------------------------------------------------------------------------------CACTAAAAGAATACCACACATTAAGTGATTTTATATACAACGAGAAAGAAGGGCTATCTTCGGC--ACGCCAAAGATCTAATACCCTTGCAGACCCAA------CC-----------------------------------------------------------------------TT--TTC----ATA
droMoj3 scaffold_6496:11196095-11196164 - TCTAATCAATG-GAAGG---CGGATCTGGCCAGCATCGGACAGTTCATACCCAAGTAAATATAGA-------------------------------TA--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA----TAT
droGri2 scaffold_15110:1256437-1256648 - ATTCTCAAGTA-TATAG---T---------CA----------------------------------------------------------------TATCTAAATATAGCTT-----------------------------------------------------------------------------------------------------------------TTACGTGCATGCAACTA------------------------------------AATAGGTGTA----------------------------------------------------------TATAAAAAAA--------GTAAAAACAAAA-------------------------------------------------AA------TAGCAA------TA---ATAAGAG-----T-----------------------------T----------------------------A-TATAAACAAGAAAGAACGGCGATCTTAGGT--AAGACGAAGACGAAATGCCCTTGCAGACAATG------TC-------GATAGTTAAAC---------TACATGAAAAACCCAA-----------------------A--ACTTATGATATTTTGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCCAACCAATG-GAAAG---CGGATCTGGCCAGTATTGGGCAGTTTATCCCCAAGTAGGTATTGG-------------------------------TA--GAAATATTGCTTGTAAGTTACA-------------------------------------------------------TGGA---------------------------------------------------TTC------AAATTT---------------------------------------------------------------------------------------------------------------------T-----------AAAACCAATAAAATAA-------------------------------------------------------------------------------------------------GACTTTAACATAACGAAATCTTATCTAATTTAAGGTTCAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTCAGT------CGCAGTCCG----------C---------TAGGTGG-CGC-----------------------CACCCA--TCTTATTTT----ATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTAACTTCGGGCGGAGC.........................................................................................................................21203.65730730000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTAACTTCGGGCGGAGCCGA......................................................................................................................24202.60525200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTAACTTCGGGCGGAGCC........................................................................................................................21201.55313100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGT------CGCAGTCCG----------C---------TAGGTGG-CGC-----------------------........................25200.65131300000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGGCGGAGCCGAAGTTGATATACCC.........................................................................................................28200.50100100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTCAGT------CGCAGTCCG----------....................................................................19200.204400000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGGCGGAGCCGAAGTTGATATACCCT........................................................................................................29200.204400000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGT------CGCAGTCCG----------C---------TAGGTGG-..................................................21200.153020010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCCTTGCAGTTCAGT------CGC....................................................................................22200.153300000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTAACTTCGGGCGGAGC.........................................................................................................................22200.102000020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAAGCTAACTTCGGGCG.............................................................................................................................21200.102000200
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT------CGCAGTCCG----------C---------TAGGTGG-CGC-----------------------........................23200.051001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAAGCTAACTTCGGGCGGAGCCG.......................................................................................................................27200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTCGGGCGGAGCCGAAGTTGATA..............................................................................................................27200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAAGGAAAGCTAACTTC..................................................................................................................................21200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCCG----------C---------TAGGTGG-CGC-----------------------CAC.....................22200.051100000
droBip1
TCTGTCCAATA-CTCAA---CAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTACTTTTCTCGCCAATTTGGTGAATGTGGTAATCTGAATTGGTTGTGCAGTTTCTCATCCAAAATATA--------A-----------AAAATCAAAAAAAA---------------------------------------------------------------------------------------------------------------TTGAATTATTGATTCAATTAATGTTTAACAAGAAAGCAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGCTAAAA------CC-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TGAAA----------AG---C-----AGGCTGGTATTAACCAAATCAGCCAACACAAGGTGGCA-CCGTGAGA--------------AAATATCTT---------------------------------------------------------------------------------------------------------------------------------TGAACTAGTTTCAATTG-----ATAATTTTAAAATAATG---------------------------------------------------------------------------------------------------GG--CA-ATAAAA-------------------------------------------------TA------TTGAAATTA--------TTAAGAGTAGTA----------------GTAGTAGACCAAAAT--------------------------AAACAATAAACAAGAAAAG-AAGCTAACTTCGGC--ACGCCGAAGTTTGTATACCCTTGCAAATATTA------TT----TCA----------T---------TAAATT-----------------------T----TACCTA-TACTTATTAT----GTTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTAAGCGGAA-AGAAG---AGGATTTA-------------------------------------------------------------------------------------AGGACA--GTATATGGGAGCCAGTTCTTGGGATACATTATT-----GATTCTAATGGTAGAATATGGAGTTAAATTGGTTAATAATTACAGAGTAGGGCTTTGGGAACTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAAGAT-----------------------------------------------------TTCATAGAACAAAAT----------------------------A-TATAAACAAGAAAGG-AAGCTAGCTTCGGC--AAGCCGAAGCTTATATACCCTTGCAGTCATCAAATATGTC-------G-----AACAAAACGCATAAAGGCTAGACAACATCGAAGCTAAGACGATTTTTCTATTCATTTTCCATATT----TTTSizeHit CountTotal NormTotal
No Reads
droEle1
TTTACCCTGAT-CAAGG---TATGCG----------------------------------------------------------------------TAAATAAATAAGACTTGCAAAAA--A-------------------------------------------------------TGTA---------------------------------------------------TGT------GAATTT-------------------------------T-------------------------------------------------------------------------ATAAGCTACTGCG--CG-------------------------------------------------------------AAA------TATAAATAACATTTTGTGTAA--T-------------------------------------------------------TATA-TGAAAACAAGAAAGG--AGCAAACTTCGGC--AAGCCGAAGTTTATATACCCTTGCAGCTATTG------CA--------AGAATTAAAT---------ATTTTTGAAGACATTA-----------------------A--AATTATGATCT-ACTTSizeHit CountTotal NormTotal
No Reads
droRho1
CA------ATG-GAAAGACAACGTTTTGGACAGTTTCAAGCAGATAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAACTGAGGGACTAGTTTGCGTT-------------------------------------------------------------------------GCAAACTTTTGAC--TG-------------------------------------------------------------AAA------TTATAATAACC---TCTGCAA--GGGTATCAAAAT---------AGAGAA---------AT--------------------AGCTAAAAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGAATACT------CT------G-CAAATTATAT-------------------A-----------------------CTCCAA--AATT--------ATTCSizeHit CountTotal NormTotal
No Reads
droBia1
CCCAACGAACG-ACAAG---AGGGACGCGCAGCCAGAATGCAGTCT----------------------------------------------------------------------------------------------TAGTATAC--TGCTAATCAAATTTTAATGT-------------------------------------------------------TAAGATTCGT------AAACTT-------------------------------ATTATTAGTC----------------------------------------------------------TCAAAATAAA--------GAGAAGATTTAA-------------------------------------------------AATTAA--AAGCAA------AG-------------------------------TTAATA-----------------------------------AAACAAAAAACAAGAAAGG-AAGTTAACTTCGTC--AATCCAAACTTTGTATACCCTTGTAGTTATAA------GC-------AATAAT-----------------------------------------------------------C---AACTTTAGTSizeHit CountTotal NormTotal
No Reads
droTak1
AGAGAAA----------------ATATGGTCAGACTGGGGCA-----------------------CGGATAGGGATTATTAATATTAAAATTTTTT---------------------------------------------------------------------------------------------------------------------------------TTATGTATACACACCTG-----ATCATATTAAAAATGAGG----------------------------------------------------------------------------------------TAAATTCTTGTC--AA-------------------------------------------------------------AAA------CCAAAG-----------------TTACATGCGGTTTTAA-------------------------------------------TTAAAAAACAAGAAAGG-AAGCTAGCGTCGGC--CAGCCGAAGCTTATATACCCTTGCAGATAATT------CCTA----T-TAATTTACAAATCGCAAAAATGGTA---------------------ATT----TTCCTA--TTATTTCTC----ATTSizeHit CountTotal NormTotal
No Reads
droEug1
AATAATAT-----TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------CAACAAAATAATTAAAG-AAGCTAACTTCGGC--AAGCCAAAGTTTATATACCCCTGCAGCTTA-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TCCAACCAATG-GAAGG---CGGATCTGGTCAGCATCGGGCAGTTTATTCCAAAGTGGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................TGGTCAGCATCGGGCAGTTTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATG-GAAGG---CGGATCTGGTCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000
....ACCAATG-GAAGG---CGGATCTGGTCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000
.......AATG-GAAGG---CGGATCTGGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......AATG-GAAGG---CGGATCTGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............AGG---CGGATCTGGTCAGCATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................G---CGGATCTGGTCAGCATCGGGCAGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GGATCTGGTCAGCATCGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATCGGGCAGTTTATTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CGGATCTGGTCAGCATCGGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AACCAATG-GAAGG---CGGATCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CCAACCAATG-GAAGG---CGGATCTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ACCAATG-GAAGG---CGGATCTGGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTGGTCAGCATCGGGCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
droSim2
TCCAACCAATG-GAAGG---CGGATCTGGTCAGCATCGGACAGTTTATTCCAAAGTGGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................TCTGGTCAGCATCGGACAGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
............GAAGG---CGGATCTGGTCAGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
droSec2
GGCTTTTTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCAGATTT------TGGCA---------------------------------------------AGAACAAA---------------------------------GCTAACAGGAAGGG-AAATTAACTGCGAC--AAGCCGAAGTTTGTATGCCCTTGCAGT--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TCCAACCAATG-GAAGG---CGGATCTGGTCAGCATTGGACAGTTTATTCCAAAGTGTGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..CAACCAATG-GAAGG---CGGATCTGGTCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
droEre2
TCCAACCAATG-GAAGG---CGGATCTGGTCAGCATTGGACAGTTCATCCCAAAGTGTGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACATAGAC------AAATTT-------------------------------TTTAATCGGC----------------------------------------------------------TTCACAT-------------------------------------------------------------------------------------------------------------ATACATCCGATTTGAA---------TG---------AA-------------------------------------------------------------TACTACATATACTTTTATAAACATAA------AC-------AA------------------------------------------------------------TCTT---ATCTTATCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
TCCAACCAGTG-GAAGG---CAGACCTGGCCAGCATTGGCCAGTTCATACCCAAGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........GTG-GAAGG---CAGACCTGGCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
AAGGTCCATGA-AGTTG---AAAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------AAAGTCAATAAAATCA-------------------------------------------------------------------------------------------------GATTTAA-------------------------------------------------------------ATATAATTTGATTTACTTTGATGTCTA-----------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATTCAGAAACTTAACCA---CAAGCCAAGTCATTAACTAAAATGTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCATTTAATTTAAATTACA--------GAGAA------------------AACGA---TACATTTAACTATATATTGAT-------------------------------------------------------------------AAACTAGATTTAA-------------------------ACATAAAAT-ACCAAAG-AAGCTAACTTCGGC-TATGCCGAAGTTTATATACCCTTGCAGT--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AAGTCTGAGTG-AGAAG---AGTGCGT-----GTAATGGGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGC---------------------------------------------------------------------------------------------------------------------G-----------GAGGCCGAAAGAACAAGAT----------------------------------------------------------------------------------------------CACTAAAAGAATACCACACATTAAGTGATTTTATATACAACGAGAAAGAAGGGCTATCTTCGGC--ACGCCAAAGATCTAATACCCTTGCAGACCCAA------CC-----------------------------------------------------------------------TT--TTC----ATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTTGCAGACCCAA------CC-----------------------------------------------------------------------TT--TTC----A..25200.357000000000000000000000000001000040000200000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAAGGGCTATCT....................................................................................................................................18200.153000000000000000000003000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTTGCAGACCCAA------C......................................................................................17200.153000000000000000000000000000000000000000000000000000000000000003
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGATCTAATACCCTTGCAGAC.................................................................................................24200.102000000000000000000000000000020000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTTGCAGACCCAA------CC-----------------------------------------------------------------------TT--TTC----ATA27200.102000000000000000000000000000000000002000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTTGCAGACCCAA------CC-----------------------------------------------------------------------TT--..........21200.102000000000000000000000000000000000200000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGATCTAATACCCTTGCAGAC.................................................................................................25200.102000002000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGATCTAATACCCTTGCAGA..................................................................................................23200.102000000000000000000000000000020000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAGAAAGAAGGGCTATCTTCGGC--.............................................................................................................................27130.081000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAGAAAGAAGGGCTATCTTCGG................................................................................................................................26130.081000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAGAAAGAAGGGCTATCTTCG.................................................................................................................................25140.071000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATCTAATACCCTTGCAG...................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGAGAAAGAAGGGCTAT......................................................................................................................................20200.051000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAAGATCTAATACCCTTGCA....................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATCTAATACCCTTGCAGA..................................................................................................22200.051000001000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAAGGGCTATCTTCGG................................................................................................................................21200.051000000010000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTTGCAGACCCAA------CC-----------------------------------------------------------------------TT--TTC----AT.26200.051000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTATCTTCGGC--ACGCCAAAG....................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATACCCTTGCAGACCCAA------CC-----------------------------------------------------------------------TT--..........25200.051000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCTTCGGC--ACGCCAAAG....................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGAAAGAAGGGCTATCTTCGG................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGC--ACGCCAAAGATCTAATACCCT........................................................................................................27200.051100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAAAGATCTAATACCCTTGCAGAC.................................................................................................28200.051000000000000000000000000000000000000000100000000000000000000000
droMoj3
TCTAATCAATG-GAAGG---CGGATCTGGCCAGCATCGGACAGTTCATACCCAAGTAAATATAGA-------------------------------TA--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA----TATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATTCTCAAGTA-TATAG---T---------CA----------------------------------------------------------------TATCTAAATATAGCTT-----------------------------------------------------------------------------------------------------------------TTACGTGCATGCAACTA------------------------------------AATAGGTGTA----------------------------------------------------------TATAAAAAAA--------GTAAAAACAAAA-------------------------------------------------AA------TAGCAA------TA---ATAAGAG-----T-----------------------------T----------------------------A-TATAAACAAGAAAGAACGGCGATCTTAGGT--AAGACGAAGACGAAATGCCCTTGCAGACAATG------TC-------GATAGTTAAAC---------TACATGAAAAACCCAA-----------------------A--ACTTATGATATTTTGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:33 AM