dan_200

GAATCGCGATCAGTGGCAGAAAAGTTATACGGCGGGCGATTCTGGCCTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGTCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGGCCCGAGACAACTGTTGTCCACCCACTCTAGTCCGTT *********************************.((((.((.(((((((((((((((((..((((((((...............)))))))))))...)).)))))))))..))).))))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	M058 embryo	V055 head	M044 female body	V105 male body	V039 embryo
.........................................................................................TTGGATGCTCTCAGTATTGGTT...................................................	22	0	1	21.00	21	18	0	2	1	0	0
.........................................................................................TTGGATGCTCTCAGTATTGGT....................................................	21	0	1	11.00	11	10	0	1	0	0	0
.........................................................................................TTGGATGCTCTCAGTATTGG.....................................................	20	0	1	8.00	8	6	0	0	2	0	0
...............................................TAACCAATGTGGCACTTCCA...............................................................................................	20	0	1	3.00	3	2	1	0	0	0	0
.........................................................................................TTGGATGCTCTCAGTATTGGTTAT.................................................	24	0	1	3.00	3	3	0	0	0	0	0
.........................................................................................TTGGATGCTCTCAGTATTGGTTATT................................................	25	0	1	2.00	2	2	0	0	0	0	0
...............................................TAACCAATGTGGCACTTCCAAT.............................................................................................	22	0	1	2.00	2	0	1	1	0	0	0
.........................................................................................TTTGATGCTCTCAGTATTGGTT...................................................	22	1	1	1.00	1	1	0	0	0	0	0
.............................................................................................ATGCTCTCAGTATTGGTTATTGG..............................................	23	0	1	1.00	1	1	0	0	0	0	0
.......................GTTATACGGCGGGCGATTCTGG.....................................................................................................................	22	0	1	1.00	1	0	0	0	1	0	0
.........................................................................................TTGGATTCTCTCAGTATTGGTT...................................................	22	1	1	1.00	1	1	0	0	0	0	0
.........................................................................................TTGGATGCTCTCATTATTGGTTAT.................................................	24	1	1	1.00	1	1	0	0	0	0	0
.............................................................................CACTGCAAGTCGTTGGATCCT................................................................	21	3	1	1.00	1	0	0	0	0	0	1
..............GGCAGAAAAGTTATACGGCGGGCG............................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0
...............................................TAACCAATGTGGCACTTCCAAC.............................................................................................	22	1	1	1.00	1	0	1	0	0	0	0
.........................................................................................TTGGATGCTCTCAGTATTT......................................................	19	1	1	1.00	1	1	0	0	0	0	0
.....................................................................GAGAAATCAATTGCAAGTCGTTGGATG..................................................................	27	0	1	1.00	1	0	0	0	0	1	0
...............................................TAACCAATGTGGCACTTCCAATGAGAAA.......................................................................................	28	0	1	1.00	1	0	1	0	0	0	0
..........................................................................................TGGATGCTCTCAGTATTGGTT...................................................	21	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................TTGGATGCTCTCAGTATTGT.....................................................	20	1	1	1.00	1	1	0	0	0	0	0
..........................................................................................TGGATGCTCTCAGTATTGGTTAT.................................................	23	0	1	1.00	1	1	0	0	0	0	0
...............................................TAACCAATGTAGCAATTCCAAT.............................................................................................	22	2	1	1.00	1	0	0	1	0	0	0
......................................................................ATAAATCAATTGCAAGTCGTTGG.....................................................................	23	1	1	1.00	1	0	1	0	0	0	0
..................................................................................................................GGCCACATTGGGCCTGAGACA...........................	21	3	2	0.50	1	0	0	0	0	1	0
.........................................................................................TTGGATGCTCTCGGTATTGTG....................................................	21	3	3	0.33	1	0	0	1	0	0	0
.............TGGCAGATAAGTTAGATGGC.................................................................................................................................	20	3	12	0.08	1	0	0	1	0	0	0
.......GATTAGTGGCAGAAAAA..........................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0	0

CTTAGCGCTAGTCACCGTCTTTTCAATATGCCGCCCGCTAAGACCGGATTGGTTACACCGTGAAGGTTACTCTTTAGTTAACGTTCAGCAACCTACGAGAGTCATAACCAATAACCGCTCTAACCCGGGCTCTGTTGACAACAGGTGGGTGAGATCAGGCAA *********************************.((((.((.(((((((((((((((((..((((((((...............)))))))))))...)).)))))))))..))).))))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	V055 head	V106 head
..................................................GGTTACACCGTGAAGGTCACT...........................................................................................	21	1	1	1.00	1	1	0	0
.............................................................................................................................................TAGGAGGGTGAGATGAGGCAA	21	3	8	0.13	1	0	1	0
.............................ACCGCCCGCTATGACCTGA..................................................................................................................	19	3	19	0.05	1	0	0	1

Species	Coordinate	ID	Type	Alignment
droAna3	scaffold_12911:3664274-3664435 -	dan_200	candidate-rescued	GAATCGCGAT----------------------------CAG------TGGCAGAAAAGTTA------TACGGCG-GGCGATTCTGGCCTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGTCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGGCCCGAGACAACTGTTGTCC-ACC----------------C----------------------ACTCTAGTCCGTT--------------
droBip1	scf7180000396640:523318-523479 -			GATTCGCGAT----------------------------CAG------TGGCAGAAAAGTTA------TACGGCG-GGCGACTCTGGCCTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGTCCTTGGATGCTCTCAGTATTGGTTTTTGGCGAGATTGGCCCCGCGGCAACTGTTGTCTACCC----------------A----------------------GT-CTAGTCCATT--------------
droKik1	scf7180000302810:681834-682015 +			GAATCGCGAGTGGGAAAGAGTG-----G------------G------ACGCGGTG----TA------TCCGGCGCGGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGGAATCAATTGCAAGTCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCCAGGCAGCTATAGTT--GT-----------------T----------------------GTTCCGCTTAGTCCGAGTAATTTTCCC
droFic1	scf7180000454114:125776-125948 +			AAATCGCGAAAGT--------G----------------CAG------TCGAAGAG---TTT------ACCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGAGGCAGCGGTATTG--GGCACTA------G------ACCC----TA----------TAGTTCCGATCAGTC--------------
droEle1	scf7180000491194:1479839-1480018 +			A-ATCGCGAAAGT--------G----------------C--TCGGAGTCTCAGAC---TTT------TTTGGCG-GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGACGTTGGATGCTCTCAGTATTGGTTATTGGCAAGATTGGCCCCGAGACAGCAGTATTCTAGGCACTTGGATAC-CA----ATCC----AA----------TAGTTCCGA--------------------
droRho1	scf7180000779322:264809-264989 -			A---------AGT--------GCTTGGGGACGCGGTCGCAG------TCGCAGAC---TTT------TCCGGCG-GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATAGGCCCCTAGGCAGCAATATTA--GGCACTG------G------TACC----CA----------TAGTTCCGATCAGTC--------------
droBia1	scf7180000302035:101903-102061 +			A---------AGT--------G----------------CAGTCGGCGTAGCAGAC---TTTC-CTCCTCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCTGTATTGGTTATTGGCGAGATTGGCCCCGAGGCAGCGTCACTA--GG------------------------------------------TCTAGGCAGTT--------------
droTak1	scf7180000415712:510670-510836 +			C---CGCGAAAGT--------G----------------------------CAGAT---TTTCCCTTTTCCCGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGTTTGGCCCCGAGGCAGCATAACTA--TAT-CTA------G------ATCC----GG------------GTTCCGATCAGTC--------------
droEug1	scf7180000409488:463434-463587 -			A-ATCGCGAAAGT--------G----------------------------CAGAA---TTT------TCCGGCC-GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGAGACAGCATTTCTA--AGC----------------A----------------------GTTTCGTTCAGT---------------
dm3	chr3R:27444068-27444217 +	dme_422	confident	G-----------T--------G----------------CAG------TCGCAGAA---TTT------TCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGGGACAGCATTACTA--GAC----------------A----------------------GTTCCGATCAGTC--------------
droSim2	3r:26724041-26724190 +	dsi_32457	confident	G-----------T--------G----------------CAG------TCGCAGAA---TTT------TCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGGGACAGCATTACTA--GAC----------------A----------------------GTTCCGATCAGTC--------------
droSec2	scaffold_2807:1110-1259 +	dse_1845	candidate	G-----------T--------G----------------CCG------TCGCAGAA---TTT------TCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGGGACAGCATTACTA--GAC----------------A----------------------GTTCCGATCAGTC--------------
droYak3	3R:28380180-28380331 +	dya_1797	candidate-rescued	A---------AGT--------G----------------CAG------TCGCAGAA---TTT------TCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGGGACAGCATTACCA--GAC----------------C----------------------GTTCCGATTAGTC--------------
droEre2	scaffold_4820:530490-530639 -	der_1522	candidate-rescued	G-----------T--------G----------------CAG------TCGCAGAA---TTT------TCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGGGGCAGCATAACTA--GAC----------------A----------------------GTTCCGATCAGTC--------------
dp5	2:16675576-16675715 -	dps_3828	confident	GAA------AAGT--------G----------------------------TACAA---GTT------------G-GGGGTCTCTGGCTTAACCAATGTGGCACTTCCAATGAAAAATCAATTACAAGTCGTTGGACGTTCTCAGTATTGGTTATTGGCAAGAAGAGCCCACAGGCAGCTATAAGA--------------------------------------------GTTACAATTGTAA--------------
droPer2	scaffold_0:3721635-3721774 +	dpe_2482	confident	GAA------AAGT--------G----------------------------TACAA---GTT------------G-GGGGTCTCTGGCTTAACCAATGTGGCACTTCCAATGAAAAATCAATTACAAGTCGTTGGACGTTCTCAGTATTGGTTATTGGCAAGAAGAGCCCACAGGCAGCTATAAGA--------------------------------------------GTTACAATTGTAA--------------
droWil2	scf2_1100000004902:9400242-9400373 +			--------------------------------------------------------------------------------TTCTAGCTTAATCAATGCGACACTTCCAATGAGGAATCCATTCGAAATCGTTGGATGATATCAGTATTGGTTATTGGCGAGAAGCATCTAAAAGCAGCTTTAAGT--TAA-----------CAAACAATTA-----G---------ATTGTTAAG---CATT--------------
droVir3	scaffold_13047:9559441-9559610 -	dvi_24635	confident	ACAAAGCGA----------------------------------------------------------GCGATT--GGGTTTTCTAGCTTAACCAATGTGGCACTTCCAATGAAAAATCAATTCGAAATCGTTGGATGTTCTCAGTATTGGTTATTGGCCAGAAGAACCCAAACACAGCTATAAGA--AAC-----------CAAA-AATAAAATAAACAACAAAA------------GACACCTAACAAAATAGCA
droMoj3	scaffold_6540:7667654-7667779 -	dmo_270	confident	--------------------------------------------------------------------------------TTCTAGCTTAACCAATGTGGCACCTCCAATGAAAAATCAATTCGAAATCGTTGGATGTTCTCAATATTGGTTATTGGCCAGAAGAGCTCAAACACAGCTATAAGA--AAC-----------GAAACC-----------------------ATCAAATATATG--------------
droGri2	scaffold_14906:2448923-2449060 -	dgr_463	candidate-rescued	--------------------------------------------------------------------------------TTCTAGCTTAACCAATGTGGCACTTCCAATGAAAAATCAATTTGCAATCGTTGGATGTTCTCAGTATTGGTTATTGGCCAGATGAATCCAAACACAGCAATAATT--AAAACCA------A------ATAC----AACAACAAAAAACT------GTAAAAT--------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GAATCGCGAT----------------------------CAG------TGGCAGAAAAGTTA------TACGGCG-GGCGATTCTGGCCTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGTCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGGCCCGAGACAACTGTTGTCC-ACC----------------C----------------------ACTCTAGTCCGTT--------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................TTGGATGCTCTCAGTATTGGTT........................................................................................................	22	1	21.00	21	1	0	0	2	0	18
..................................................................................................................................TTGGATGCTCTCAGTATTGGT.........................................................................................................	21	1	11.00	11	0	0	0	1	0	10
..................................................................................................................................TTGGATGCTCTCAGTATTGG..........................................................................................................	20	1	8.00	8	2	0	0	0	0	6
........................................................................................TAACCAATGTGGCACTTCCA....................................................................................................................................................	20	1	3.00	3	0	1	0	0	0	2
..................................................................................................................................TTGGATGCTCTCAGTATTGGTTAT......................................................................................................	24	1	3.00	3	0	0	0	0	0	3
..................................................................................................................................TTGGATGCTCTCAGTATTGGTTATT.....................................................................................................	25	1	2.00	2	0	0	0	0	0	2
........................................................................................TAACCAATGTGGCACTTCCAAT..................................................................................................................................................	22	1	2.00	2	0	1	0	1	0	0
......................................................................................................................................ATGCTCTCAGTATTGGTTATTGG...................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.........................................................GTTA------TACGGCG-GGCGATTCTGG..........................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
................................................GGCAGAAAAGTTA------TACGGCG-GGCG.................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAAC..................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................TTGGATGCTCTCAGTATTT...........................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..............................................................................................................GAGAAATCAATTGCAAGTCGTTGGATG.......................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
........................................................................................TAACCAATGTGGCACTTCCAATGAGAAA............................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................TGGATGCTCTCAGTATTGGTT........................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................TTGGATGCTCTCAGTATTGT..........................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................TGGATGCTCTCAGTATTGGTTAT......................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droBip1

GATTCGCGAT----------------------------CAG------TGGCAGAAAAGTTA------TACGGCG-GGCGACTCTGGCCTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGTCCTTGGATGCTCTCAGTATTGGTTTTTGGCGAGATTGGCCCCGCGGCAACTGTTGTCTACCC----------------A----------------------GT-CTAGTCCATT--------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAATCGCGAGTGGGAAAGAGTG-----G------------G------ACGCGGTG----TA------TCCGGCGCGGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGGAATCAATTGCAAGTCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCCAGGCAGCTATAGTT--GT-----------------T----------------------GTTCCGCTTAGTCCGAGTAATTTTCCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAATCGCGAAAGT--------G----------------CAG------TCGAAGAG---TTT------ACCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGAGGCAGCGGTATTG--GGCACTA------G------ACCC----TA----------TAGTTCCGATCAGTC--------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A-ATCGCGAAAGT--------G----------------C--TCGGAGTCTCAGAC---TTT------TTTGGCG-GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGACGTTGGATGCTCTCAGTATTGGTTATTGGCAAGATTGGCCCCGAGACAGCAGTATTCTAGGCACTTGGATAC-CA----ATCC----AA----------TAGTTCCGA--------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A---------AGT--------GCTTGGGGACGCGGTCGCAG------TCGCAGAC---TTT------TCCGGCG-GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATAGGCCCCTAGGCAGCAATATTA--GGCACTG------G------TACC----CA----------TAGTTCCGATCAGTC--------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A---------AGT--------G----------------CAGTCGGCGTAGCAGAC---TTTC-CTCCTCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCTGTATTGGTTATTGGCGAGATTGGCCCCGAGGCAGCGTCACTA--GG------------------------------------------TCTAGGCAGTT--------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C---CGCGAAAGT--------G----------------------------CAGAT---TTTCCCTTTTCCCGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGTTTGGCCCCGAGGCAGCATAACTA--TAT-CTA------G------ATCC----GG------------GTTCCGATCAGTC--------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

A-ATCGCGAAAGT--------G----------------------------CAGAA---TTT------TCCGGCC-GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGAGACAGCATTTCTA--AGC----------------A----------------------GTTTCGTTCAGT---------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

G-----------T--------G----------------CAG------TCGCAGAA---TTT------TCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGGGACAGCATTACTA--GAC----------------A----------------------GTTCCGATCAGTC--------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................TAACCAATGTGGCACTTCCAATGAGA..............................................................................................................................................	26	1	196.00	196	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	17	0	0	0	0	3	1	0	0	0	0	0	0	0	0	1	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	0	0	37	1	11	5	44	17	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
.........................................................................................................................TGCAAGGCGTTGGATGCTCTCAGTAT.............................................................................................................	26	1	127.00	127	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	12	13	19	43	0	0	1	0	0	3	2	1	0	0	0	0	0	0	0	1	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................TCAATTGCAAGGCGTTGGATGCTCT...................................................................................................................	25	1	99.00	99	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	5	10	4	2	3	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	18	5	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................TGCAAGGCGTTGGATGCTCTCAGT...............................................................................................................	24	1	78.00	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	9	2	14	25	0	0	0	0	1	0	6	0	0	0	0	0	0	0	0	2	0	0	0	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................TGCAAGGCGTTGGATGCTCTCAGTA..............................................................................................................	25	1	76.00	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	13	6	12	19	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................AATCAATTGCAAGGCGTTGGATGC......................................................................................................................	24	1	59.00	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	3	2	0	0	8	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	1	2	6	0	0	0	0	0	0	2	7	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ATCAATTGCAAGGCGTTGGATGCTCT...................................................................................................................	26	1	53.00	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	6	7	4	3	15	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	1	1	4	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAGAAA............................................................................................................................................	28	1	46.00	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	9	0	0	3	9	6	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................TAACCAATGTGGCACTTCCAATGAGAAT............................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CGTTGGATGCTCTCAGTATTGGTTATT.....................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GCAAGGCGTTGGATGCTCTCAGTA..............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................CAATGTGGCACTTCCAATGA................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AATTGCAAGGCGTTGGATGCTCTCAGTA..............................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ATGAGAAATCAATTGCAAGGCG..............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................TTCCAATGAGAAATCAATTGCAAGGCG..............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

G-----------T--------G----------------CAG------TCGCAGAA---TTT------TCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGGGACAGCATTACTA--GAC----------------A----------------------GTTCCGATCAGTC--------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................TAACCAATGTGGCACTTCCAATGAGA..............................................................................................................................................	26	1	41.00	41	0	0	0	0	0	0	21	8	8	4	0	0	0	0	0	0	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGTT........................................................................................................	22	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGATGCTCTCAGTATTGG..........................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AAGGCGTTGGATGCTCTCAGTATTGGT.........................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
........................................................................................................................TTGCAAGGCGTTGGATGC......................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TATTGGTTATTGGCGAGATTG...........................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................TGGATGCTCTCAGTATTGGTTATTGGC..................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCC.....................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CGAGATTGGCCCCGGGACAGCATT...........................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TTGCAAGGCGTTGGATGCT.....................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCA....................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TCAATTGCAAGGCGTTGGATGCTCTC..................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................AGGCGTTGGATGCTCTCAGTATTGGT.........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAG...............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATG.................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................AATCAATTGCAAGGCGTTGGATGC......................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................AGGCGTTGGATGCTCTC..................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGA................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................TGCAAGGCGTTGGATGCTCC...................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ATCAATTGCAAGGCGTTGGATGC......................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................ATTGCAAGGCGTTGGATGC......................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CAATTGCAAGGCGTTGGATGCTCTCAG................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................AATCAATTGCAAGGCGTTGGATGCTC....................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................TGTGGCACTTCCAATGAGAAA............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................TCTCAGTATTGGTTATTG....................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CGAGATTGGCCCCGGGACAGCATTACTA--.....................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGTTATT.....................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAGAA.............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................AAGGCGTTGGATGCTCTC..................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AACCAATGTGGCACTTCCAATGAGA..............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................AGGCGTTGGATGCTT....................................................................................................................	15	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

G-----------T--------G----------------CCG------TCGCAGAA---TTT------TCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGGGACAGCATTACTA--GAC----------------A----------------------GTTCCGATCAGTC--------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................TTGGATGCTCTCAGTATTGGTTATT.....................................................................................................	25	2	1.00	2	0	0	1	1
...................................................................................................................................TGGATGCTCTCAGTATTGGTTAT......................................................................................................	23	2	1.00	2	0	0	0	2
..............................................................................................ATGTGGCACTTCCAATGAGAT.............................................................................................................................................	21	2	0.50	1	1	0	0	0
.........................................................................................................................TGCAAGGCGTTGGATGCTC....................................................................................................................	19	2	0.50	1	0	0	1	0
......................................................................................................................AATTGCAAGGCGTTGGATG.......................................................................................................................	19	2	0.50	1	0	1	0	0
.......................................................................................................................................TGCTCTCAGTATTGGTTATTGG...................................................................................................	22	2	0.50	1	0	0	1	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGT.........................................................................................................	21	2	0.50	1	0	0	0	1
........................................................................................................................................................ATTGGCGAGATTGGCCCCGGGACAGC..............................................................................	26	2	0.50	1	0	1	0	0
........................................G------TCGCAGAA---TTT------TCCGGC--GG...................................................................................................................................................................................	20	2	0.50	1	1	0	0	0
........................................................................................................................TTGCAAGGCGTTGGATGCTCTCA.................................................................................................................	23	2	0.50	1	0	0	1	0
..............................................................................................................GAGAAATCAATTGCAAGGCGTTGGA.........................................................................................................................	25	2	0.50	1	0	0	1	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGTTT.......................................................................................................	23	2	0.50	1	0	0	0	1
........................................................................................TAACCAATGTGGCACTTCCAATG.................................................................................................................................................	23	2	0.50	1	0	0	1	0
...................................................................................................................................TGGATGCTCTCAGTATTGGTTATT.....................................................................................................	24	2	0.50	1	0	0	1	0

droYak3

A---------AGT--------G----------------CAG------TCGCAGAA---TTT------TCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGGGACAGCATTACCA--GAC----------------C----------------------GTTCCGATTAGTC--------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................TAACCAATGTGGCACTTCCA....................................................................................................................................................	20	1	3.00	3	0	1	1	1	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAGAAA............................................................................................................................................	28	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAGA..............................................................................................................................................	26	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCC.....................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAGAA.............................................................................................................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGTTT.......................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AATTGCAAGGCGTTGGATGCT.....................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGA................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAAT..................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGTC........................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGTTAT......................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................TGGATGCTCTCAGTATTGGTTAT......................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................TTGCAAGGCGTTGGATGCTCT...................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGTTATT.....................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................AGAAATCAATTGCAAGGCGTTGG..........................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGTT........................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TCAATTGCAAGGCGTTGGATGCTC....................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

G-----------T--------G----------------CAG------TCGCAGAA---TTT------TCCGGC--GGGGCTTCTGGCTTAACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCTCTCAGTATTGGTTATTGGCGAGATTGGCCCCGGGGCAGCATAACTA--GAC----------------A----------------------GTTCCGATCAGTC--------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................TTGGATGCTCTCAGTATTGGTT........................................................................................................	22	1	4.00	4	0	0	0	0	0	4	0
...................................................................................................................................TGGATGCTCTCAGTATTGGTTAT......................................................................................................	23	1	3.00	3	0	0	0	0	0	3	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGT.........................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGTTATTGGT..................................................................................................	28	1	2.00	2	0	0	0	0	0	0	2
........................................................................................TAACCAATGTGGCACTTCCA....................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATG.................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................GCAAGGCGTTGGATGCTCTCA.................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................TCTCAGTATTGGTTATTG....................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................ATGAGAAATCAATTGCAAGGCGTT............................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................CTCTCAGTATTGGTTATTGG...................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................GGATGCTCTCAGTATTGGTTATTG....................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................TGAGAAATCAATTGCAAGGCGTTG...........................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................TGCAAGGCGTTGGATGCTCTCAGTAT.............................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................TTGGATGCTCTCAGTATTGGTTT.......................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................TGCTCTCAGTATTGGTTATTGG...................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................TCTCAGTATTGGTTATTGG...................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
........................................................................................TAACCAATGTGGCACTTCC.....................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0

dp5

GAA------AAGT--------G----------------------------TACAA---GTT------------G-GGGGTCTCTGGCTTAACCAATGTGGCACTTCCAATGAAAAATCAATTACAAGTCGTTGGACGTTCTCAGTATTGGTTATTGGCAAGAAGAGCCCACAGGCAGCTATAAGA--------------------------------------------GTTACAATTGTAA--------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................TTGGACGTTCTCAGTATTGGTT........................................................................................................	22	1	20.00	20	0	5	0	1	0	7	6	0	0	1
........................................................................................TAACCAATGTGGCACTTCCAATG.................................................................................................................................................	23	1	13.00	13	0	5	1	2	4	0	1	0	0	0
..................................................................................................................................TTGGACGTTCTCAGTATTGGTTAT......................................................................................................	24	1	8.00	8	0	1	0	0	2	3	2	0	0	0
..................................................................................................................................TTGGACGTTCTCAGTATTGGT.........................................................................................................	21	1	7.00	7	0	2	0	0	0	4	1	0	0	0
..................................................................................................................................TTGGACGTTCTCAGTATTGGTTATT.....................................................................................................	25	1	6.00	6	0	0	0	2	0	3	1	0	0	0
........................................................................................TAACCAATGTGGCACTTCCA....................................................................................................................................................	20	1	5.00	5	0	2	1	2	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGA................................................................................................................................................	24	1	4.00	4	0	1	2	0	0	0	0	0	0	1
........................................................................................TAACCAATGTGGCACTTCCAAT..................................................................................................................................................	22	1	4.00	4	0	0	1	1	1	0	1	0	0	0
..................................................................................................................................TTGGACGTTCTCAGTATTGG..........................................................................................................	20	1	2.00	2	0	1	0	0	0	1	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAAA..............................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCC.....................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAA...................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0	0	0	0	0
..................................................................................................................................TTGGACGTTCTCAGTATTGGTTT.......................................................................................................	23	1	2.00	2	0	1	0	0	0	1	0	0	0	0
..................................................................................................................................TTGGACGTTCTCAGTATTGGTTA.......................................................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0
...................................................................................................................................TGGACGTTCTCAGTATTGGTTAT......................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAA...............................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGACGTTCTCAGTATTGGTTAA......................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................GTTGGACGTTCTCAGTATTGGT.........................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..A------AAGT--------G----------------------------TACAA---GTT------------G-GGGGT................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TTACAAGTCGTTGGACGTTCTCAGTA..............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................TCAATTACAAGTCGTTGGACGTTC....................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGACGTTCTCAGTATTGGTTATC.....................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAAAA.............................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAAAAA............................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........GT--------G----------------------------TACAA---GTT------------G-GGGGTCTCTGG..........................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................AATCAATTACAAGTCGTTGGA.........................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................AAGAAGAGCCCACAGGCAGCT.............................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................TGGACGTTCTCAGTATTGGTTATT.....................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................TCAATTACAAGTCGTTGGACGTT.....................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................TGAAAAATCAATTACAAGTCGTTGGAC........................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAAC..................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................GTTGGACGTTCTCAGTATTGGTTAT......................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................GTTCTCAGTATTGGTTATTG....................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAAAAAT...........................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................TACAAGTCGTTGGACGTTCTC..................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................TTAACCAATGTGGCACTTCCA....................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAAAAAA...........................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

GAA------AAGT--------G----------------------------TACAA---GTT------------G-GGGGTCTCTGGCTTAACCAATGTGGCACTTCCAATGAAAAATCAATTACAAGTCGTTGGACGTTCTCAGTATTGGTTATTGGCAAGAAGAGCCCACAGGCAGCTATAAGA--------------------------------------------GTTACAATTGTAA--------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................TTGGACGTTCTCAGTATTGGTT........................................................................................................	22	1	28.00	28	0	1	0	11	14	2
..................................................................................................................................TTGGACGTTCTCAGTATTGGT.........................................................................................................	21	1	9.00	9	0	0	0	3	4	2
..................................................................................................................................TTGGACGTTCTCAGTATTGGTTATT.....................................................................................................	25	1	7.00	7	3	0	0	1	2	1
..................................................................................................................................TTGGACGTTCTCAGTATTGGTTA.......................................................................................................	23	1	4.00	4	0	0	0	3	1	0
........................................................................................TAACCAATGTGGCACTTCCAATG.................................................................................................................................................	23	1	4.00	4	0	0	1	1	2	0
..................................................................................................................................TTGGACGTTCTCAGTATTGGTTAT......................................................................................................	24	1	2.00	2	0	0	0	0	2	0
..................................................................................................................................TTGGACGTTCTCAGTATTGG..........................................................................................................	20	1	2.00	2	0	0	0	0	2	0
...........................................................................................................................................CTCAGTATTGGTTATTGG...................................................................................................	18	1	2.00	2	2	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCA....................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0
........................................................................................TAACCAATGTGGCACTTCCAA...................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0
.......................................................................................................................ATTACAAGTCGTTGGACGTTCT...................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................CAATTACAAGTCGTTGGACGTTC....................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................GCAAGAAGAGCCCACAGGCAGCT.............................................................................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCC.....................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
...................................................................................................................................TGGACGTTCTCAGTATTGGTTAT......................................................................................................	23	1	1.00	1	0	0	0	1	0	0
........................................................................................TAACCAATGTGGCACTTCCAAT..................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................TTGGACGTTCTCAGTATTGGG.........................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droWil2

--------------------------------------------------------------------------------TTCTAGCTTAATCAATGCGACACTTCCAATGAGGAATCCATTCGAAATCGTTGGATGATATCAGTATTGGTTATTGGCGAGAAGCATCTAAAAGCAGCTTTAAGT--TAA-----------CAAACAATTA-----G---------ATTGTTAAG---CATT--------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................TTGGATGATATCAGTATTGGTTATT.....................................................................................................	25	1	11.00	11	0	1	0	6	4
.......................................................................................TTAATCAATGCGACACTTCC.....................................................................................................................................................	20	1	7.00	7	0	3	0	3	1
.......................................................................................TTAATCAATGCGACACTTCCAATG.................................................................................................................................................	24	1	6.00	6	2	3	0	0	1
........................................................................................TAATCAATGCGACACTTCCAATG.................................................................................................................................................	23	1	6.00	6	2	0	0	2	2
..................................................................................................................................TTGGATGATATCAGTATTGGTT........................................................................................................	22	1	4.00	4	0	0	0	0	4
.......................................................................................TTAATCAATGCGACACTTCCAATGAGGA.............................................................................................................................................	28	1	3.00	3	0	1	0	2	0
.....................................................................................................................................GATGATATCAGTATTGGTTATTGG...................................................................................................	24	1	3.00	3	0	3	0	0	0
.......................................................................................TTAATCAATGCGACACTTCCAATGAGGAA............................................................................................................................................	29	1	3.00	3	0	2	0	1	0
..................................................................................................................................TTGGATGATATCAGTATTGGT.........................................................................................................	21	1	2.00	2	0	0	0	0	2
.......................................................................................TTAATCAATGCGACACTTCCA....................................................................................................................................................	21	1	2.00	2	0	0	0	1	1
...............................................................................................................AGGAATCCATTCGAAATCGTTGGA.........................................................................................................................	24	1	2.00	2	1	1	0	0	0
.......................................................................................TTAATCAATGCGACACTTCCAATGAGG..............................................................................................................................................	27	1	2.00	2	0	2	0	0	0
...........................................................................................................................................ATCAGTATTGGTTATTGG...................................................................................................	18	1	2.00	2	2	0	0	0	0
........................................................................................................................................GATATCAGTATTGGTTATTGG...................................................................................................	21	1	2.00	2	0	2	0	0	0
..................................................................................................................................TTGGATGATATCAGTATTGGTTAT......................................................................................................	24	1	2.00	2	0	1	0	1	0
.......................................................................................................................................TGATATCAGTATTGGTTATTG....................................................................................................	21	1	1.00	1	1	0	0	0	0
........................................................................................TAATCAATGCGACACTTCC.....................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..........................................................................................................................................TATCAGTATTGGTTATTGG...................................................................................................	19	1	1.00	1	0	1	0	0	0
........................................................................................TAATCAATGCGACACTTCCAATGAGG..............................................................................................................................................	26	1	1.00	1	0	1	0	0	0
................................................................................................................................CGTTGGATGATATCAGTATTG...........................................................................................................	21	1	1.00	1	0	0	0	1	0
.......................................................................................................................................TGATATCAGTATTGGTTATTGGCGAGA..............................................................................................	27	1	1.00	1	0	1	0	0	0
..................................................................................................................................TTGGATGATATCAGTATTGG..........................................................................................................	20	1	1.00	1	0	1	0	0	0
..................................................................................................................................TTGGATGATATCAGTATTGGTTA.......................................................................................................	23	1	1.00	1	0	0	0	0	1
...........................................................................................................................................ATCAGTATTGGTTATTGGC..................................................................................................	19	1	1.00	1	0	0	0	0	1
.........................................................................................AATCAATGCGACACTTCCA....................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.......................................................................................................................................TGATATCAGTATTGGTTATTGG...................................................................................................	22	1	1.00	1	0	1	0	0	0
.............................................................................................................TGAGGAATCCATTCGAAATCGTTGGA.........................................................................................................................	26	1	1.00	1	0	1	0	0	0
..................................................................................................GACACTTCCAATGAGGAATC..........................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.............................................................................................................TGAGGAATCCATTCGAAATCGTTGGATG.......................................................................................................................	28	1	1.00	1	1	0	0	0	0
........................................................................................................................TTCGAAATCGTTGGATGA......................................................................................................................	18	1	1.00	1	1	0	0	0	0
.......................................................................................TTAATCAATGCGACACTTCCAATGAG...............................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................CAATTA-----G---------ATTGTTAAG---CATT--------------	20	1	1.00	1	0	0	1	0	0
...........................................................................................................AATGAGGAATCCATTCGAAATCGTTGGA.........................................................................................................................	28	1	1.00	1	0	1	0	0	0
.......................................................................................TTAATCAATGCGACACTTCCAA...................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................CGAAATCGTTGGATGATATCAGTATTGG..........................................................................................................	28	1	1.00	1	0	1	0	0	0
...................................................................................................................................TGGATGATATCAGTATTGGTTATTG....................................................................................................	25	1	1.00	1	0	0	0	0	1
........................................................................................TAATCAATGCGACACTTCCAAT..................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
..............................................................................................................GAGGAATCCATTCGAAATCGTT............................................................................................................................	22	1	1.00	1	1	0	0	0	0
.......................................................................................TTAATCAATGCGACACTTCCAAC..................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................GCATCTAAAAGCAGCTTTAAGT--TAA-----------C......................................................	26	1	1.00	1	0	1	0	0	0
............................................................................................................ATGAGGAATCCATTCGAAATC...............................................................................................................................	21	1	1.00	1	0	0	0	0	1
........................................................................................................................TTCGAAATCGTTGGATGG......................................................................................................................	18	3	0.33	1	1	0	0	0	0

droVir3

ACAAAGCGA----------------------------------------------------------GCGATT--GGGTTTTCTAGCTTAACCAATGTGGCACTTCCAATGAAAAATCAATTCGAAATCGTTGGATGTTCTCAGTATTGGTTATTGGCCAGAAGAACCCAAACACAGCTATAAGA--AAC-----------CAAA-AATAAAATAAACAACAAAA------------GACACCTAACAAAATAGCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................TAACCAATGTGGCACTTCCAATGAAAAA............................................................................................................................................	28	1	62.00	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	2	2	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	4	5	3	0	0	0	0	0	0	9	9	3	6	8
........................................................................................TAACCAATGTGGCACTTCCAATGA................................................................................................................................................	24	1	51.00	51	0	0	5	0	0	0	0	0	0	0	0	0	0	0	2	1	1	1	0	1	0	1	2	0	0	3	1	2	0	0	3	4	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	1	3	2	0	3	0	0	0	5	3	0	2
........................................................................................TAACCAATGTGGCACTTCCAATGAAA..............................................................................................................................................	26	1	49.00	49	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	9	0	0	1	0	0	3	7	6	4	5	6
..................................................................................................................................TTGGATGTTCTCAGTATTGGTTATT.....................................................................................................	25	1	38.00	38	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	1	0	0	0	0	0	1	6	11	2	0	4	1	1	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAAT..................................................................................................................................................	22	1	37.00	37	1	0	3	1	0	0	0	0	0	0	0	0	0	0	3	3	0	0	5	1	0	3	1	0	0	0	0	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	2	1	0	0	1	1	1	0	0	0	0	0	1	1
..................................................................................................................................TTGGATGTTCTCAGTATTGGTT........................................................................................................	22	1	32.00	32	3	2	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	6	2	0	0	0	0	0	0	4	1	2	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATG.................................................................................................................................................	23	1	25.00	25	0	0	5	0	0	0	0	0	0	0	0	0	0	0	3	1	0	1	0	1	0	0	1	0	0	0	1	0	1	1	1	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0
........................................................................................TAACCAATGTGGCACTTCCAATGAAAA.............................................................................................................................................	27	1	24.00	24	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	3	1	0	0	0	0	0	0	2	5	0	1	7
........................................................................................TAACCAATGTGGCACTTCCAATGAA...............................................................................................................................................	25	1	20.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	1	3	4	0	3	4
.......................................................................................TTAACCAATGTGGCACTTCCA....................................................................................................................................................	21	1	19.00	19	0	1	3	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	2	0	0	0	1	0	0	0	3
........................................................................................TAACCAATGTGGCACTTCCAATGAAAAAT...........................................................................................................................................	29	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	0	0	0	0	0	0	2	3	1	1	5
........................................................................................TAACCAATGTGGCACTTCCA....................................................................................................................................................	20	1	17.00	17	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	2	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAA...................................................................................................................................................	21	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	2	2	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................TTGGATGTTCTCAGTATTGGTTAT......................................................................................................	24	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	2	0	0	0	1	0
..................................................................................................................................TTGGATGTTCTCAGTATTGGT.........................................................................................................	21	1	10.00	10	0	2	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.......................................................................................TTAACCAATGTGGCACTTCCAATGAAAAA............................................................................................................................................	29	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	0	0	0	0	0	0	2	0	0	0	1
....................................................................................................................TCAATTCGAAATCGTTGGATGTTC....................................................................................................................	24	1	7.00	7	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TTAACCAATGTGGCACTTCCAATGAAA..............................................................................................................................................	27	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	0	2	0	1
........................................................................................TAACCAATGTGGCACTTCC.....................................................................................................................................................	19	1	6.00	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................TTAACCAATGTGGCACTTCC.....................................................................................................................................................	20	1	6.00	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
.......................................................................................TTAACCAATGTGGCACTTCCAATGAAAA.............................................................................................................................................	28	1	5.00	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................TTGGATGTTCTCAGTATTGGTTT.......................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TCAATTCGAAATCGTTGGATGTTCTCA.................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGGATGTTCTCAGTATTGGTTATT.....................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................................ATCAATTCGAAATCGTTGGATGTTCT...................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................TTAACCAATGTGGCACTTCCAA...................................................................................................................................................	22	1	3.00	3	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................TCTCAGTATTGGTTATTG....................................................................................................	18	1	3.00	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGATGTTCTCAGTATTGG..........................................................................................................	20	1	3.00	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................GATGTTCTCAGTATTGGTTATTG....................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
....................................................................................................................TCAATTCGAAATCGTTGGATGTTCT...................................................................................................................	25	1	3.00	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TTAACCAATGTGGCACTTCCAATGAA...............................................................................................................................................	26	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TTAACCAATGTGGCACTTCCAAT..................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTCAGTATTGGTTATTGGCTT................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
............................................................................................CAATGTGGCACTTCCAAT..................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGATGTTCTCAGTATTGGTTA.......................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TGTTCTCAGTATTGGTTATTG....................................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AACCAATGTGGCACTTCCAATGA................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TTAACCAATGTGGCACTTCCAATGAAAAAT...........................................................................................................................................	30	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.............................................................................................................................AATCGTTGGATGTTCTCAGTATT............................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AACCAATGTGGCACTTCCAATGAAAA.............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GTTCTCAGTATTGGTTATTGGC..................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................TATTGGCCAGAAGAACCCAAACAC.................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................CAATGTGGCACTTCCAATGAAAAA............................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TGAAAAATCAATTCGAAATCGTTGGA.........................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAATT.............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TCAGTATTGGTTATTGGCCAG...............................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GTTCTCAGTATTGGTTATTG....................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................CAGTATTGGTTATTGGCCAGA..............................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGAAAAATC..........................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................ATTCGAAATCGTTGGATGTTC....................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................TGGATGTTCTCAGTATTGGTT........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TGTGGCACTTCCAATGAAAAA............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................AATTCGAAATCGTTGGATGTTCTCA.................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ATCAATTCGAAATCGTTGGATGTTCTC..................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAAAATCAATTCGAAATCGTTGGATGT......................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAATGT................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................AATCAATTCGAAATCGTTGGATGTTC....................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................ATGTTCTCAGTATTGGTTATTGGT..................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TTAACCAATGTGGCACTTCCAATGA................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................GTTGGATGTTCTCAGTATTGGTT........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CTTAACCAATGTGGCACTTCCAATGAAA..............................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGGATGTTCTCAGTATTGGTTATTGG...................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................ATGTTCTCAGTATTGGTTATTGA...................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................TCGAAATCGTTGGATGTTCTCAGTAT.............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTTCCAAA..................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TGTTCTCAGTATTGGTTATTGGC..................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................AGTATTGGTTATTGGCCAGAAGAACCC.......................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTCAGTATTGGTTATTGGC..................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................TGGATGTTCTCAGTATTGGTTATTAAA..................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................TTGGATGTTCTCAGTATTGGTTAA......................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................AATCGTTGGATGTTCTCAGTATTGGT.........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................TCGAAATCGTTGGATGTTCTCAGTATC............................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................AATGTGGCACTTCCAATGAAAAA............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................CGAAATCGTTGGATGTTCT...................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................CAGAAGAACCCAAACACAGCTATAAGA--.....................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TGTTCTCAGTATTGGTTAT......................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AACCAATGTGGCACTTCCAAT..................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TGTGGCACTTCCAATGAAA..............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTCAGTATTGGTTATTT....................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGATGTTCTCAGTATTG...........................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ATCAATTCGAAATCGTTGGATGTTCTCAGTATTGGTTAT......................................................................................................	39	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TTAACCAATGTGGCACTTCCAATG.................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTGGATGTTCTCAGTATTGGTTATTG....................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ATCAATTCGAAATCGTTGGATGTTC....................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AATGAAAAATCAATTCGAAATCGTTGGATGTTCTCAGTATTGGT.........................................................................................................	44	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TGTTCTCAGTATTGGTTATT.....................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................AAATCAATTCGAAATCGTTGGAT........................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................TTCTCAGTATTGGTTATTG....................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................TAACCAATGTGGCACTT.......................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

droMoj3

--------------------------------------------------------------------------------TTCTAGCTTAACCAATGTGGCACCTCCAATGAAAAATCAATTCGAAATCGTTGGATGTTCTCAATATTGGTTATTGGCCAGAAGAGCTCAAACACAGCTATAAGA--AAC-----------GAAACC-----------------------ATCAAATATATG--------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................TTGGATGTTCTCAATATTGGTTATT.....................................................................................................	25	1	15.00	15	3	2	0	0	9	1
..................................................................................................................................TTGGATGTTCTCAATATTGGT.........................................................................................................	21	1	13.00	13	4	0	4	2	1	2
..................................................................................................................................TTGGATGTTCTCAATATTGGTT........................................................................................................	22	1	10.00	10	2	0	3	4	0	1
..................................................................................................................................TTGGATGTTCTCAATATTGGTTAT......................................................................................................	24	1	9.00	9	1	1	0	1	4	2
........................................................................................TAACCAATGTGGCACCTCC.....................................................................................................................................................	19	1	4.00	4	3	0	0	0	1	0
..................................................................................................................................TTGGATGTTCTCAATATTGGTTATC.....................................................................................................	25	1	4.00	4	1	0	0	0	3	0
........................................................................................TAACCAATGTGGCACCTCCAATGAAAAA............................................................................................................................................	28	1	4.00	4	1	0	0	0	3	0
........................................................................................TAACCAATGTGGCACCTCCAA...................................................................................................................................................	21	1	4.00	4	0	0	0	0	4	0
........................................................................................TAACCAATGTGGCACCTCCAAT..................................................................................................................................................	22	1	4.00	4	0	0	0	1	3	0
........................................................................................TAACCAATGTGGCACCTCCA....................................................................................................................................................	20	1	3.00	3	1	0	0	0	2	0
........................................................................................TAACCAATGTGGCACCTCCAATGA................................................................................................................................................	24	1	3.00	3	1	0	0	0	2	0
........................................................................................TAACCAATGTGGCACCTCCAATG.................................................................................................................................................	23	1	3.00	3	2	0	0	0	1	0
.........................................................................................................................TCGAAATCGTTGGATGTTCTCAATATTGG..........................................................................................................	29	1	1.00	1	1	0	0	0	0	0
........................................................................................TAACCAATGTGGCACCTCCAATGAA...............................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
........................................................................................TAACCAATGTGGCACCTCCAATGAAAA.............................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................TAACCAATGTGGCACCTCCAATC.................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................TTGGATGTTCTCAATATTGGTC........................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................TAACCAATGTGGCACCTCCAATGAAA..............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................GGATGTTCTCAATATTGGTTATT.....................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.........................................................................................AACCAATGTGGCACCTCCAA...................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................GTTGGATGTTCTCAATATTGGTTATT.....................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................TCGAAATCGTTGGATGTTCTC..................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................TGGATGTTCTCAATATTGGTTATT.....................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................TGGATGTTCTCAATATTGGTTATC.....................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.........................................................................................AACCAATGTGGCACCTCCAATGAAAA.............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................TTAACCAATGTGGCACCTCCAA...................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................TGGATGTTCTCAATATTGGTTAT......................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droGri2

--------------------------------------------------------------------------------TTCTAGCTTAACCAATGTGGCACTTCCAATGAAAAATCAATTTGCAATCGTTGGATGTTCTCAGTATTGGTTATTGGCCAGATGAATCCAAACACAGCAATAATT--AAAACCA------A------ATAC----AACAACAAAAAACT------GTAAAAT--------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................TAACCAATGTGGCACTTCCA....................................................................................................................................................	20	1	5.00	5	5	0
........................................................................................TAACCAATGTGGCACTTCCAATGA................................................................................................................................................	24	1	2.00	2	2	0
........................................................................................TAACCAATGTGGCACTTCCAATG.................................................................................................................................................	23	1	1.00	1	1	0
........................................................................................TAACCAATGTGGCACTTCCAAT..................................................................................................................................................	22	1	1.00	1	1	0
..................................................................................................................................TTGGATGTTCTCAGTATTGGT.........................................................................................................	21	1	1.00	1	0	1
..................................................................................................................................TTGGATGTTCTCAGTATTGG..........................................................................................................	20	1	1.00	1	1	0
..................................................................................................................................TTGGATGTTCTCAGTATTGGTT........................................................................................................	22	1	1.00	1	0	1
........................................................................................TAACCAATGTGGCACTTCC.....................................................................................................................................................	19	1	1.00	1	1	0

dan_200

scaffold_12911:3664324-3664385 -

candidate-rescued

Canonical miRNA

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-30.0	-30.0	-29.8