dan_1997

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGCTTATCAGAGGTCTGCCATGCTCAGTTGCTCCCAGTCCGTTGGTTGCCCTAGTCGCAGGTGGAAGGGTTCGGTTCGGCTTGTGTCAGTCCGTAAATCAGAGAAACTACATATACCTCGACCTTGCTGTCACAACAGTCGTATCCAATAAATTGTGTAACTAATTCCATCATGTTTGCTTTTGCTGTGTGCCTTTCGAAGTGAGTGGGAACGAGGAGCGAGCTGATCTCGAGGACCAGCAGGCTGGCGGC ******************************************************************************************************************..((((.(((......)))..))))............................................****************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	M044 female body	V106 head
...............................................................GACGGGTGCGGTTCGGCTTGT.......................................................................................................................................................................	21	2	1	1.00	1	0	1	0	0
.................................................................................TTTGTCAGTCCGTAAATCAGAGAA..................................................................................................................................................	24	1	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................................CTCGAGGACCAGCAGGCTGGCGGC	24	0	1	1.00	1	1	0	0	0
................................................................................................................................................................................................CTTTCGAAGTGAGTGGGGACGAGGAGC................................	27	1	1	1.00	1	1	0	0	0
........................................GTTGGTTGCCCTAGTCGCA................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0
....................................................................................................................CTCGACCTTGCTGTCACAACAGTC...............................................................................................................	24	0	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................GATCTCGAGGACCAGCAGGCTGGCGGC	27	0	1	1.00	1	0	0	1	0
....................................................................................................................................................................TTCCATCATGTTTGCTTTTGC..................................................................	21	0	1	1.00	1	1	0	0	0
.....................................................................................................AGACACTACACAAACCTCGAC.................................................................................................................................	21	3	2	0.50	1	1	0	0	0
..............................................................................GCTTGTGACGGTCCGTAAAA.........................................................................................................................................................	20	3	5	0.20	1	0	0	1	0
..............................................................................GCTTGTGACGGTCCGTGA...........................................................................................................................................................	18	3	20	0.15	3	0	0	2	1
...................................................................GGTTCGGTTCCGGTTGCGTC....................................................................................................................................................................	20	3	11	0.09	1	0	0	1	0
......................................................................................................................................................................................TGCTGTGTCCCTGTCGAAA..................................................	19	3	20	0.05	1	0	0	1	0

GCGAATAGTCTCCAGACGGTACGAGTCAACGAGGGTCAGGCAACCAACGGGATCAGCGTCCACCTTCCCAAGCCAAGCCGAACACAGTCAGGCATTTAGTCTCTTTGATGTATATGGAGCTGGAACGACAGTGTTGTCAGCATAGGTTATTTAACACATTGATTAAGGTAGTACAAACGAAAACGACACACGGAAAGCTTCACTCACCCTTGCTCCTCGCTCGACTAGAGCTCCTGGTCGTCCGACCGCCG ****************************************************************..((((.(((......)))..))))............................................******************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	V105 male body
..............................................................................................................................................CAGGTTATTTAACGCATTG..........................................................................................	19	2	4	0.50	2	2	0	0
...............................................................................................................................ACAATGTTTTCAGCATAGG.........................................................................................................	19	2	2	0.50	1	1	0	0
......................................................................................................GTTTGATGTATAGGCAGCTGG................................................................................................................................	21	3	2	0.50	1	0	1	0
..........................................................................................................................................................CAAATTGGTTAAGGAAGTAC.............................................................................	20	3	11	0.09	1	0	0	1
........................................................CGTCCACCTTCTCTAGCCAG...............................................................................................................................................................................	20	3	17	0.06	1	1	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13266:14228684-14228934 -	dan_1997	CGCTTATCAGAGGTCTGCCATG-CT----CAGTTGCTCCCAGTCCGTTGGTTGCCCTAGTCGCAGGTG--G-AAGGGTT-CG--------------------------------GTTCGG-------------------C-----TTGTG-------------------------------TCAGTCCGTAAATCAGAGAAACTACA----------------------------------------------TATACCTCGACCTTGCTGTCACAACAGTCGT------ATCCAATAAATT-GT-----------G---------TAACTAATTCCATCATGTTTG------CTTTTGCTG------TGTGCCTTTCGAAGTGAGTGGGAACGAGGAGCGAGCTGATCTCGAGGAC---------CAG---------------------------------------------CA------GGCTGGCGGC
droBip1	scf7180000396759:1902838-1903080 +		CGCTTATCAGAGCT------TG-CT----CAGTTGCTCGCA----GTCGGTTGCCCTAGGCGCAGGTG--A-TAGGGTT-CA--------------------------------GTTCGG-------------------C-----TAGTG-------------------------------TCAGTCCGTAAATTACAG---------------AGAC-----------------------------------TATACCTCGACCTTGCTGTCACAACACTCGT------GTCCAATAAATT-GT-----------G---------TAACCAATTCCATCATGTCTGCTTTTTCTTTTGCTG------TGTGCCTTTCAAAGTGAGTGGGAACGAGAAGCACGCGGATCTGGAGGAC---------CAG---------------------------------------------CA------GGCTGGCGGC
droKik1	scf7180000302277:1021818-1022059 -		GGCTTATCGCGG------------G----CAGTCGCTCGCA----GTCGGTTGCCCTAGGCGCAAGTG--T-AG-GGTCCCGGTACCCGTTCCTCCCGTACT----------------------------------------------TG-------------------------------TTAGTCCA----------------TAAATTGCCAAAT-----------------------------------TAGGCCTTGCCGTAGCTGTCACAACACTCGT------ATCCGTCCGTTT-GAG--------------------TAACTAATTCGACCATGTTTG------CTTTTGCTGTCTATCTCTGCCCTTCGAAGTGAGCGGGAACGAGGAACGCGGCGATCAGGAGGAC---------CCG---------------------------------------------CA------GGAAG-----
droFic1	scf7180000453342:24130-24399 +		CGCTTATCA--------------CT----CAGTCGCTCCCA----GTCGGTTGCCCTAGGCGCAAGTG--G-AAG-----------------------------GG-GAATCGG------------AGAGTCGGAGAAATCGGAAA----------A----------------------CA------------------------TATTCCACTCGGTTAGAACGTAGC------------------------TATCTGTAGTTGTCGCTGTCAGATCACTCGA------ACCCGTCCCTTT-GC-----------C---------TTTCTAATTCGACCATGTTTG------CTTTTGCCG------CCTGCCCTTCGAAGTGAGCGGGAACGAGGACCTGGAAGATCAGGATCGCCAGCAGGATC------AGGAACA------------------------GGAGCAGGAGCA------GGCTGGCGAA
droEle1	scf7180000491214:4865945-4866199 -		CGCTTATCA--------------CT----CAGTCGCTGGCA----GTCGGTTGCCCTAGGCGCAAGTTTAGGAAT---T-----------------------TGCTGGAAC-----------------------------TTGAAAGGGTGCAGCCAC------------------------------T----------------CAAACTGCTAAAT-----------------------------------TATACCTTGCCGTAGCTGTCAAAACAATCGT------TTCCATCCGTTTTGAGTAACTTA-------------TAACTAATTCGACCATGTTTG------TTTCTGCCA------TCTGCCTTTCGAAGTGAGCGCGAACGAGGAACGCGGCGATCAGCAGGAT---------CAAGA---------------------------------GGATCAGGAACA------GGCTGGCGGC
droRho1	scf7180000777386:238725-239029 +		CGCTTATCA--------------CT----CAGTCGTTCGCC----GTCGGTTGTCCTAGTCGCAAGTG--G-AGG-----------------------------TG-GAATTGGATTTGGAATTGGAAT-----AGGAACTGGAAGGGTTGCACCCACACCCTCATCCACACCCACACA--CACACCCA----------------CAAATTGCTAAAT-----------------------------------TAGACCTTGCTGTAGCTGTCACAGCAATCGT------ATCCATCCGTTTCGA-----------G---------TAACTAATTCGACCATGTTTG---TTGCTTTTGCTG------TCTGCCCTTCGCAGTGAGCGAGAACGAGGAGCGCGGCGATCGGGAGGAT---------CAGGATCAGGATCA------------------------AGATCAGAAGGA------GACTGGCGGC
droBia1	scf7180000302143:731205-731469 +		CGCTTATCA--------------CC----CAGTTGCTCGCC----GTCGGTTGCCCTAGGCACATGTG--G-GGAA--G-----------------------TGC------------TGAAATTGGA-T-----AGGCATTGGAAGGGTTGCACCAC------------------------------------------------CGAACTGCTGAAT-----------------------------------TAGACCTTGCTGTAGCTGTCATAAAAATCAC------AGCCATCCGTTT-GAGCTA---CCGACTAAACTACATAACTAATTCGACCATGTTTG------CCTTTGCTG------TCTGCCCTTCGAAGTGAGCGAGAAGGAGGAGCGCGGAGATCTGGAGGAT---------CAGGA---------------------------------------GGAGCA------GGCTGGCGGC
droTak1	scf7180000415722:590834-591074 -		CGCTTATCA--------------CT----CAGTTGTTCGCC----GTCGGTTGCCCTAGGCACATGTG--A-AAT-----------------------------TG-GAA------------------T-----AGGAATTGGAAGGGTTGCACCCA------------------------------------------------CAAATTGCTAAAT-----------------------------------TAGACCTTGCTGTAGCTGTCATAAAAATCAC------AACCATTCGTTT-GAGTGA---CTAACT--------AAACTAATTCAACCATGTTTG------CT------G------TTTGCCCTTCCAAGTGAGCGGAAGCAAGGAGCGCGACGATCTGGAGGAT---------CAGGAGGAGGATCA------------------------------------------G---GAGGGC
droEug1	scf7180000409464:542043-542271 +		CGCTTATCA--------------CT----CAGTCGCTCGCA----GTCGGTTGCCCTAGGTACATGTG--G-GAG-----------------------------TG-GAAT-----------------------------TGGAAGGGTTGCACCTG------------------------------------------------CTAATTGCTCAAT-----------------------------------TACACCTTGCCGTAGCTGTCATAATACTCGT------ATCCATTCGTTT-GAG--------------------TAACTAATTCCATCATGTTTG------CTTTTGCTG------TCTGCCCCTCGAAGTGAGCGAGAACGAGGAGCGAGGCGACCTGGATGAC---------CAGG------------------------------------------AGCA------GGCTGGCGGC
dm3	chr2R:20182911-20183166 +		CGCTTATCA--------------CT----CAGTTACTCGCA----GGCGGTTGCCCTAGGCACAAGTG--G-AAC-----------------------------TG-AAAT-----------------------------CGGAAGGGTGGCATCCA------------------------------------------------CAAAGTGCTCTAT-----------------------------------TTGGCCATTCCCTAGCTGTCACT--AATCAT------ATCCGTACGATT-GAGCAATATCTGAC---------TAACTGTTTCGATCATGTTTG------CTTTCACCC------CCTGCCCTTTGAAGTGAGCGAGAACGAGAAGCGTCCCGATCTGGAGGAT---------CAGGATCAGGATCA------------------------GAATCAGGAGCA------GGCTGGCGGC
droSim2	2r:20667049-20667304 +	dsi_29369	CGCTTATCA--------------CT----CAGTCACTCGCA----TGCGGTTGCCCTAGGCACAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGAAGGGTGGCATCCA------------------------------------------------CAAAGTGCTCCAT-----------------------------------TTGGCCTTTCCCTAGCTGTCACT--AACCAT------ATCCGTACGATT-GAGCAATATCTGAC---------TAACTGTTTCGATCATGTTTG------CTTTCGCCC------CCTGCCCTTTGAAGTGAGCGAGAACGAGAAGCGCCCCGATCTGGAGGAT---------CAGGATCTGGATCA------------------------GAATCAGGAGCA------GGCTGGCGGC
droSec2	scaffold_23:62329-62584 +		CGCTTATCA--------------CT----CAGTCACTCGCA----GGCGGTTGCCCTAGGCACAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGACGGGTGGCATCCA------------------------------------------------CAAAGTGCTCCAT-----------------------------------TTGGCCTTTCCCTAGCTGTCACT--AACCAT------ATCCGTACGATT-GAGCAATATCTGAC---------TAACTGTTTCGATCATGTTTG------CTTTCGCCC------CCTGCCCTTTGAAGTGAGCGAGAACGAGAAGCGCCCCGATCTGGAGGAC---------CAGGATCAGGATCA------------------------GAATCAGGAGCA------GGCTGGCGGC
droYak3	2R:20149031-20149329 +		CGCTTATCA--------------CT----CAGTCGCTCGCA----GTCGGTTGCCCTAGGCACAAGTG--G-AAC-----------------------------TG-G-----------GAACTGGAAA-----CGGAATCGCAAGGGTGGCATCCA------------------------------------------------CATAGTGCTCCAT-----------------------------------AAGGCCTTGCCGTAGCTGTCACTAGAATCATAATTCTA-TCGCACGATT-GAACAACTTTTGAC---------TAACTATTTTGACCATGTTTG------CTCTCGCCC------CCTGCCCTTTGAAGTGAGCGAGAACGAGAAGCGCGCCGATCTTGAGGAT---------CAGGGTCAGGATCAGCAGCAGCAGCAGGAGCAGGAGCAGGAGCAGGAACA------GGCTGGCGG-
droEre2	scaffold_4845:21548584-21548840 +		CGCTTATCA--------------CT----CAGTCACTCGCA----GTCGGTTGCCCTAGGCACCAGTG--G-AATA------------------------CTTGTA-GAAT-----------------------------CGGAAGGGTGGCATCCA------------------------------------------------CATAGTGCTCAAA-----------------------------------AAGGCCTTGTCGTACCTGTCACTACAGTCAGAACCCTATTCGTACGATT-GAGCTACTTTTGAC---------TAACTTATTCGACTATGTTTG------CTTTCGTTC------CCTGCCCTTTGAAGTGAACGAGAAGGAGGAGCGCGCCGATCTCGAGGAT---------CAGGATCA------------------------------------GGAGCA------GGCTGGCGGC
dp5	3:18491127-18491349 -		CGCT-ATCAGAGGCCCACTATCACTATTCCAGTCGAAGCTA----GACAATTGCCCTAGGCGTTAGTC--G-AAGGGTT-AG---------------------------------------------------------------------------------------------------------------------------------------------TGTGGGGATTTCTGGTCTGCTGTCAGGTGTCTGGCCTTGCCATTGCTGTCAGACTAAACAT------GAAAA---TGTT-GAG--------------------TAAATCA-----------------------TTAATG------CCTTGCCTTTGCAGTGAGTGAGAACGGAGAACTCGGCGACCAGGAGGAC---------CAA---------------------------------------------CA------GCCTGGAGGC
droPer2	scaffold_34:439461-439683 -		CGCT-ATCAGAGGCCCACTATCACTATTCCAGTCGAAGCTA----GACAATTGCCCTAGGCGTTAGTC--G-AAGGGTT-AG---------------------------------------------------------------------------------------------------------------------------------------------TGTGGGGATTTCTGGTCTGCTGTCAGGTGTCTGGCCTTGCCATTGCTGTCAGACTAAACAT------GAAAA---TGTT-GAG--------------------TAAATCA-----------------------TTAATG------CCTTGCCTTTGCAGTGAGTGAGAACGGAGAACTCGGCGACCAGGAGGAC---------CAA---------------------------------------------CA------GCCTGGAGGC
droWil2	scf2_1100000004558:1173502-1173615 +		TGTTTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTC------CT-TTTTTG----CTTCAAACTCGTGAAGTGAACGAAAAACGAGATCAGGTCGATCTGGAGGAC---------CAAGACCTGGCGGA------------------------GGAAGAGGAGGCACTTCCCGCTGGTCAA
droVir3	scaffold_12875:7279057-7279105 +		T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAAGTGAGCGAGTGTAAGCCGCATCGAGATCTGAAGGAG---------GACGA---------------------------------------------------G---------
droMoj3	scaffold_6496:26068285-26068328 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGAGCGAGTGTGAAACACATCGTGATCCTAAGGAG---------GAAGA---------------------------------------------------A---------
droGri2	scaffold_15245:829600-829660 +		TGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGAAAGTGAGCGAGTGTAAGCAGCAACTAGACCAGAAGGA---------------------------------------------------------GAG------ACCTGAAGAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CGCTTATCAGAGGTCTGCCATG-CT----CAGTTGCTCCCAGTCCGTTGGTTGCCCTAGTCGCAGGTG--G-AAGGGTT-CG--------------------------------GTTCGG-------------------C-----TTGTG-------------------------------TCAGTCCGTAAATCAGAGAAACTACA----------------------------------------------TATACCTCGACCTTGCTGTCACAACAGTCGT------ATCCAATAAATT-GT-----------G---------TAACTAATTCCATCATGTTTG------CTTTTGCTG------TGTGCCTTTCGAAGTGAGTGGGAACGAGGAGCGAGCTGATCTCGAGGAC---------CAG---------------------------------------------CA------GGCTGGCGGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAGGAC---------CAG---------------------------------------------CA------GGCTGGCGGC	24	1	1.00	1	0	1	0	0	0	0
.............................................GTTGGTTGCCCTAGTCGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................CTCGACCTTGCTGTCACAACAGTC..................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCGAGGAC---------CAG---------------------------------------------CA------GGCTGGCGGC	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TTCCATCATGTTTG------CTTTTGC....................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

CGCTTATCAGAGCT------TG-CT----CAGTTGCTCGCA----GTCGGTTGCCCTAGGCGCAGGTG--A-TAGGGTT-CA--------------------------------GTTCGG-------------------C-----TAGTG-------------------------------TCAGTCCGTAAATTACAG---------------AGAC-----------------------------------TATACCTCGACCTTGCTGTCACAACACTCGT------GTCCAATAAATT-GT-----------G---------TAACCAATTCCATCATGTCTGCTTTTTCTTTTGCTG------TGTGCCTTTCAAAGTGAGTGGGAACGAGAAGCACGCGGATCTGGAGGAC---------CAG---------------------------------------------CA------GGCTGGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGCTTATCGCGG------------G----CAGTCGCTCGCA----GTCGGTTGCCCTAGGCGCAAGTG--T-AG-GGTCCCGGTACCCGTTCCTCCCGTACT----------------------------------------------TG-------------------------------TTAGTCCA----------------TAAATTGCCAAAT-----------------------------------TAGGCCTTGCCGTAGCTGTCACAACACTCGT------ATCCGTCCGTTT-GAG--------------------TAACTAATTCGACCATGTTTG------CTTTTGCTGTCTATCTCTGCCCTTCGAAGTGAGCGGGAACGAGGAACGCGGCGATCAGGAGGAC---------CCG---------------------------------------------CA------GGAAG-----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGCTTATCA--------------CT----CAGTCGCTCCCA----GTCGGTTGCCCTAGGCGCAAGTG--G-AAG-----------------------------GG-GAATCGG------------AGAGTCGGAGAAATCGGAAA----------A----------------------CA------------------------TATTCCACTCGGTTAGAACGTAGC------------------------TATCTGTAGTTGTCGCTGTCAGATCACTCGA------ACCCGTCCCTTT-GC-----------C---------TTTCTAATTCGACCATGTTTG------CTTTTGCCG------CCTGCCCTTCGAAGTGAGCGGGAACGAGGACCTGGAAGATCAGGATCGCCAGCAGGATC------AGGAACA------------------------GGAGCAGGAGCA------GGCTGGCGAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGCTTATCA--------------CT----CAGTCGCTGGCA----GTCGGTTGCCCTAGGCGCAAGTTTAGGAAT---T-----------------------TGCTGGAAC-----------------------------TTGAAAGGGTGCAGCCAC------------------------------T----------------CAAACTGCTAAAT-----------------------------------TATACCTTGCCGTAGCTGTCAAAACAATCGT------TTCCATCCGTTTTGAGTAACTTA-------------TAACTAATTCGACCATGTTTG------TTTCTGCCA------TCTGCCTTTCGAAGTGAGCGCGAACGAGGAACGCGGCGATCAGCAGGAT---------CAAGA---------------------------------GGATCAGGAACA------GGCTGGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGCTTATCA--------------CT----CAGTCGTTCGCC----GTCGGTTGTCCTAGTCGCAAGTG--G-AGG-----------------------------TG-GAATTGGATTTGGAATTGGAAT-----AGGAACTGGAAGGGTTGCACCCACACCCTCATCCACACCCACACA--CACACCCA----------------CAAATTGCTAAAT-----------------------------------TAGACCTTGCTGTAGCTGTCACAGCAATCGT------ATCCATCCGTTTCGA-----------G---------TAACTAATTCGACCATGTTTG---TTGCTTTTGCTG------TCTGCCCTTCGCAGTGAGCGAGAACGAGGAGCGCGGCGATCGGGAGGAT---------CAGGATCAGGATCA------------------------AGATCAGAAGGA------GACTGGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGCTTATCA--------------CC----CAGTTGCTCGCC----GTCGGTTGCCCTAGGCACATGTG--G-GGAA--G-----------------------TGC------------TGAAATTGGA-T-----AGGCATTGGAAGGGTTGCACCAC------------------------------------------------CGAACTGCTGAAT-----------------------------------TAGACCTTGCTGTAGCTGTCATAAAAATCAC------AGCCATCCGTTT-GAGCTA---CCGACTAAACTACATAACTAATTCGACCATGTTTG------CCTTTGCTG------TCTGCCCTTCGAAGTGAGCGAGAAGGAGGAGCGCGGAGATCTGGAGGAT---------CAGGA---------------------------------------GGAGCA------GGCTGGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGCTTATCA--------------CT----CAGTTGTTCGCC----GTCGGTTGCCCTAGGCACATGTG--A-AAT-----------------------------TG-GAA------------------T-----AGGAATTGGAAGGGTTGCACCCA------------------------------------------------CAAATTGCTAAAT-----------------------------------TAGACCTTGCTGTAGCTGTCATAAAAATCAC------AACCATTCGTTT-GAGTGA---CTAACT--------AAACTAATTCAACCATGTTTG------CT------G------TTTGCCCTTCCAAGTGAGCGGAAGCAAGGAGCGCGACGATCTGGAGGAT---------CAGGAGGAGGATCA------------------------------------------G---GAGGGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CGCTTATCA--------------CT----CAGTCGCTCGCA----GTCGGTTGCCCTAGGTACATGTG--G-GAG-----------------------------TG-GAAT-----------------------------TGGAAGGGTTGCACCTG------------------------------------------------CTAATTGCTCAAT-----------------------------------TACACCTTGCCGTAGCTGTCATAATACTCGT------ATCCATTCGTTT-GAG--------------------TAACTAATTCCATCATGTTTG------CTTTTGCTG------TCTGCCCCTCGAAGTGAGCGAGAACGAGGAGCGAGGCGACCTGGATGAC---------CAGG------------------------------------------AGCA------GGCTGGCGGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CGCTTATCA--------------CT----CAGTTACTCGCA----GGCGGTTGCCCTAGGCACAAGTG--G-AAC-----------------------------TG-AAAT-----------------------------CGGAAGGGTGGCATCCA------------------------------------------------CAAAGTGCTCTAT-----------------------------------TTGGCCATTCCCTAGCTGTCACT--AATCAT------ATCCGTACGATT-GAGCAATATCTGAC---------TAACTGTTTCGATCATGTTTG------CTTTCACCC------CCTGCCCTTTGAAGTGAGCGAGAACGAGAAGCGTCCCGATCTGGAGGAT---------CAGGATCAGGATCA------------------------GAATCAGGAGCA------GGCTGGCGGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................AC-----------------------------TG-AAAT-----------------------------CGGAAGGGTGG.....................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................T---------CAGGATCAGGATCA------------------------GAATCAGGAGC.................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTGGAGGAT---------CAGGATCAGGAT......................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGTTACTCGCA----GGCGGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................AGGCACAAGTG--G-AAC-----------------------------TG-A................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGTTACTCGCA----GGCGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCA------------------------GAATCAGGAGCA------GGC.......	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAT---------CAGGATCAGGATCA------------------------G...........................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGAGGAT---------CAGGATCAGGATCA------------------------GAA.........................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAGCA------GGCTGGCGGC	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................AAC-----------------------------TG-AAAT-----------------------------CGGAAGGGT.......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGTTACTCGCA----GGCGGTTGCCCTAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCA------------------------GAATCAGGAGCA------GGCTGGCG..	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAT---------CAGGATCAGGAT......................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAT---------CAGGATCAGGATCA------------------------............................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAT---------CAGGATCAGGATCA------------------------T...........................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CGCTTATCA--------------CT----CAGTCACTCGCA----TGCGGTTGCCCTAGGCACAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGAAGGGTGGCATCCA------------------------------------------------CAAAGTGCTCCAT-----------------------------------TTGGCCTTTCCCTAGCTGTCACT--AACCAT------ATCCGTACGATT-GAGCAATATCTGAC---------TAACTGTTTCGATCATGTTTG------CTTTCGCCC------CCTGCCCTTTGAAGTGAGCGAGAACGAGAAGCGCCCCGATCTGGAGGAT---------CAGGATCTGGATCA------------------------GAATCAGGAGCA------GGCTGGCGGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................A----TGCGGTTGCCCTAGGCACAAGTG--G-AAC-----------------------------T...................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AC-----------------------------TG-GAAT-----------------------------CGGAAGGGTGGCATC.................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CGCCCCGATCTGGAGGAT---------CA................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAATATCTGAC---------TAACTGT...............................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ATCTGAC---------TAACTGTTTCGATCATGT....................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................AACCAT------ATCCGTACGATT-GAGCAAT......................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CTAGGCACAAGTG--G-AAC-----------------------------C...................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AC-----------------------------TG-GAAT-----------------------------CGGAAGGGTG......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................ATCCGTACGATT-GAGCAATATCTGA................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................ACAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGAA...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................AGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGAAGGGTG......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AC-----------------------------TG-GAAT-----------------------------CGGAAGGGTGGCATCCA------------------------------------------------...............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTACGATT-GAGCAATATCTGAC---------......................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGGAT---------CAGGATCTGGATCA------------------------GA..........................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CACTCGCA----TGCGGTTGCCCTAGGCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................T------ATCCGTACGATT-GAGCAATATCTGA................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CA----TGCGGTTGCCCTAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................GCACAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGAAGG.........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................CACAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGAAGGG........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................TCCGTACGATT-GAGCAAT......................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................GGTTGCCCTAGGCACAAGTG--G-AAC-----------------------------TG-GA...............................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AC-----------------------------TG-GAAT-----------------------------CGGAAGGGTGG.....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCA------------------------GAATCAGGA...................	15	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

CGCTTATCA--------------CT----CAGTCACTCGCA----GGCGGTTGCCCTAGGCACAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGACGGGTGGCATCCA------------------------------------------------CAAAGTGCTCCAT-----------------------------------TTGGCCTTTCCCTAGCTGTCACT--AACCAT------ATCCGTACGATT-GAGCAATATCTGAC---------TAACTGTTTCGATCATGTTTG------CTTTCGCCC------CCTGCCCTTTGAAGTGAGCGAGAACGAGAAGCGCCCCGATCTGGAGGAC---------CAGGATCAGGATCA------------------------GAATCAGGAGCA------GGCTGGCGGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................CAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGACGGG........................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	1
........................................................................AAC-----------------------------TG-GAAT-----------------------------CGGACGGGT.......................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
.........................................................................AC-----------------------------TG-GAAT-----------------------------CGGACGGGTGGC....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
........................................................................AAC-----------------------------TG-GAAT-----------------------------CGGACGGGTGGCA...................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.................................................................GTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGACGGGT.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGCCCCGATCTGGAGGAC---------CAGGA.............................................................	27	1	1.00	1	0	0	1	0
.............................................................ACAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGA............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ACGAGAAGCGCCCCGATCTGGA...............................................................................	22	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................T--AACCAT------ATCCGTACGATT-GAGC.........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
......................................................................G-AAC-----------------------------TG-GAAT-----------------------------CGGACGGG........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................GCTGTCACT--AACCAT------ATCCG.....................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
.............................................................ACAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGAC...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
..............................AGTCACTCGCA----GGCGGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGGAC---------CAGGATCAGG........................................................	19	1	1.00	1	0	0	1	0
...................................................................G--G-AAC-----------------------------TG-GAAT-----------------------------CGGACGGGTGGC....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
........................................................................AAC-----------------------------TG-GAAT-----------------------------CGGACGGGTGGC....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------GAATCAGGAGCA------GGCTGGCGGC	23	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCCCCGATCTGGAGGAC---------CAGG..............................................................	25	1	1.00	1	0	1	0	0
........................................................................AAC-----------------------------TG-GAAT-----------------------------CGGACGGGTGGCATCC................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
..............................................................................................................T-----------------------------CGGACGGGTGGCATCCA------------------------------------------------CAAAGTG........................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
......................................................................G-AAC-----------------------------TG-GAAT-----------------------------CGGACGGGTGGC....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
...................................................................G--G-AAC-----------------------------TG-GAAT-----------------------------CGGACGGGTGG.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
.........................................................AGGCACAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGACG..........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.........................................................................AC-----------------------------TG-GAAT-----------------------------CGGACGGGTGGCATCCA------------------------------------------------...............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
........................................................................................................TG-GAAT-----------------------------CGGACGGGTGGCA...................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
...................................................................G--G-AAC-----------------------------TG-GAAT-----------------------------CGGACGGGTGGCA...................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1
.........................................................................AC-----------------------------TG-GAAT-----------------------------CGGACGGGTGG.....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
.........................................................................AC-----------------------------TG-GAAT-----------------------------CGGACGGGTG......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.........................................................AGGCACAAGTG--G-AAC-----------------------------TG-G................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.............................................................ACAAGTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGACG..........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................................................................TGGCCTTTCCCTAGCTGT............................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
.................................................................GTG--G-AAC-----------------------------TG-GAAT-----------------------------CGGACGGGTG......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
.....................................CGCA----GGCGGTTGCCCTAGGCACA............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1

droYak3

CGCTTATCA--------------CT----CAGTCGCTCGCA----GTCGGTTGCCCTAGGCACAAGTG--G-AAC-----------------------------TG-G-----------GAACTGGAAA-----CGGAATCGCAAGGGTGGCATCCA------------------------------------------------CATAGTGCTCCAT-----------------------------------AAGGCCTTGCCGTAGCTGTCACTAGAATCATAATTCTA-TCGCACGATT-GAACAACTTTTGAC---------TAACTATTTTGACCATGTTTG------CTCTCGCCC------CCTGCCCTTTGAAGTGAGCGAGAACGAGAAGCGCGCCGATCTTGAGGAT---------CAGGGTCAGGATCAGCAGCAGCAGCAGGAGCAGGAGCAGGAGCAGGAACA------GGCTGGCGG-	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................AACGAGAAGCGCGCCGATCTTGAGGAT---------C.................................................................	28	1	8.00	8	0	0	0	0	0	0	0	0	0	0	8
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAT---------CAGGGTCAGGATCAGCAGC...............................................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GAACGAGAAGCGCGCCGATCTTGA...............................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................GAACTGGAAA-----CGGAATCGCAAGGGT.......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................GCTCCAT-----------------------------------AAGGCCTTGCCGTAGCTGTC...........................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................GGCACAAGTG--G-AAC-----------------------------TG-G-----------GAA..................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................CTTGCCGTAGCTGTCACTA.......................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................ATCCA------------------------------------------------CATAGTGCTCCAT-----------------------------------AAGGC..........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAACA------GGCTGGCGG-	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAT---------CAGGGTCAGGATCAGCAGCAGCA...........................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAGGAGCAGGAACA------GGCTGGC...	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
.................................CGCTCGCA----GTCGGTTGCCCTAGGCACAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................ATTTTGACCATGTTTG------CTCTC......................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................GAAA-----CGGAATCGCAAGGGTGGC....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................G-AAC-----------------------------TG-G-----------GAACTGGAAA-----CGGAATC...............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................G------CTCTCGCCC------CCTGCCCTTTGAAGT.............................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................AATCATAATTCTA-TCGCACGATT-GAA..........................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................GGAAA-----CGGAATCGCAAGGG........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................TAGGCACAAGTG--G-AAC-----------------------------TG-G-----------GAACTGGAAA-----......................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CTCGCCC------CCTGCCCTTTGAAGTGAGC.........................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACTGGAAA-----CGGAATCGCAAGGGTGGC....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................AA-----CGGAATCGCAAGGGTGGCATC.................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGGAGCAGGAGCAG...........................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGGAGCAGG................................	20	12	0.17	2	0	0	0	2	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGGAGCAGG................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGGAGCAGGA...............................	20	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGCAGGAGCAGGAGC.......................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGAGCAGGAGCAGGA...................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

CGCTTATCA--------------CT----CAGTCACTCGCA----GTCGGTTGCCCTAGGCACCAGTG--G-AATA------------------------CTTGTA-GAAT-----------------------------CGGAAGGGTGGCATCCA------------------------------------------------CATAGTGCTCAAA-----------------------------------AAGGCCTTGTCGTACCTGTCACTACAGTCAGAACCCTATTCGTACGATT-GAGCTACTTTTGAC---------TAACTTATTCGACTATGTTTG------CTTTCGTTC------CCTGCCCTTTGAAGTGAACGAGAAGGAGGAGCGCGCCGATCTCGAGGAT---------CAGGATCA------------------------------------GGAGCA------GGCTGGCGGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................................................................GATT-GAGCTACTTTTGAC---------T.....................................................................................................................................................................	19	1	2.00	2	1	0	0	0	1	0	0
...................................................................G--G-AATA------------------------CTTGTA-GAAT-----------------------------CGGAAGGGT.......................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	1	1	0
................................................................................................................................................................................................................................................................................................CTATTCGTACGATT-GAGCTACTTTT..................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GAACCCTATTCGTACGATT-GAGC.........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................GAACCCTATTCGTACGATT-GAGCTACTTT...................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GTACCTGTCACTACAGTCA.................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
...................................CTCGCA----GTCGGTTGCCCTAGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........................................................................A------------------------CTTGTA-GAAT-----------------------------CGGAAGGGT.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................GGCCTTGTCGTACCTGTCACTAC......................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.................................................GTTGCCCTAGGCACCAGTG--G-A...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGCGCCGATCTCGAGGAT---------CAGGATC...........................................................	29	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTCAGAACCCTATTCGTACGATT-GA...........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CTATGTTTG------CTTTCGTTC------CCT.........................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA------------------------------------GGAGCA------GGCTGGCGGC	20	1	1.00	1	0	0	0	0	0	1	0
.........................................................................ATA------------------------CTTGTA-GAAT-----------------------------CGGAAGGGTGGC....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0

dp5

CGCT-ATCAGAGGCCCACTATCACTATTCCAGTCGAAGCTA----GACAATTGCCCTAGGCGTTAGTC--G-AAGGGTT-AG---------------------------------------------------------------------------------------------------------------------------------------------TGTGGGGATTTCTGGTCTGCTGTCAGGTGTCTGGCCTTGCCATTGCTGTCAGACTAAACAT------GAAAA---TGTT-GAG--------------------TAAATCA-----------------------TTAATG------CCTTGCCTTTGCAGTGAGTGAGAACGGAGAACTCGGCGACCAGGAGGAC---------CAA---------------------------------------------CA------GCCTGGAGGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................GAACTCGGCGACCAGGAGGAC---------C.................................................................	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGAACTCGGCGACCAGGA...............................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................AGTGAGAACGGAGAACTCGGC.......................................................................................	21	1	2.00	2	0	1	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGGAGGAC---------CAA---------------------------------------------CA------GCCT......	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAC---------CAA---------------------------------------------CA------GCCTGGA...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAACGGAGAACTCGGC.......................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................GATTTCTGGTCTGCTGTCAGGTGT...............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................TGGGGATTTCTGGTCTGCTGTCAGGT.................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GAACTCGGCGACCAGGAGGAC---------CAA---------------------------------------------C.................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................A----GACAATTGCCCTAGGCGTTAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGACCAGGAGGAC---------CAA---------------------------------------------C.................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGCT-ATCAGAGGCCCACTATCACTATTCCAGTCGAAGCTA----GACAATTGCCCTAGGCGTTAGTC--G-AAGGGTT-AG---------------------------------------------------------------------------------------------------------------------------------------------TGTGGGGATTTCTGGTCTGCTGTCAGGTGTCTGGCCTTGCCATTGCTGTCAGACTAAACAT------GAAAA---TGTT-GAG--------------------TAAATCA-----------------------TTAATG------CCTTGCCTTTGCAGTGAGTGAGAACGGAGAACTCGGCGACCAGGAGGAC---------CAA---------------------------------------------CA------GCCTGGAGGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................AACGGAGAACTCGGCGACCAGGAGG.............................................................................	25	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGAACTCGGCGACCAGGAG..............................................................................	25	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................GTCTGGCCTTGCCATTGCTTG............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................GGAGAACTCGGCGACCAGGAGGAC---------..................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAC---------CAA---------------------------------------------CA------GCCTGGAG..	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGAACTCGGCGACCAGGAGGAC---------C.................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CGGAGAACTCGGCGACCAGGAG..............................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGAACTCGGCGACCAGGAGGAC---------C.................................................................	29	1	1.00	1	1	0	0	0	0	0

droWil2

TGTTTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTC------CT-TTTTTG----CTTCAAACTCGTGAAGTGAACGAAAAACGAGATCAGGTCGATCTGGAGGAC---------CAAGACCTGGCGGA------------------------GGAAGAGGAGGCACTTCCCGCTGGTCAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA------------------------GGAAGAGGAGGCACTTCCCGCTGGT...	28	1	2.00	2	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGAC---------CAAGACCTGGCGG.....................................................	21	1	2.00	2	0	1	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAC---------CAAGACCTGGCGGA------------------------............................	21	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGAGGAC---------CAAGACCTGGC.......................................................	21	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTGGAGGAC---------CAAGACCTT.........................................................	22	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGCACTTCCCGCTGGT...	21	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCACTTCCCGCTGG....	18	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................CGAAAAACGAGATCAGGTCGA.....................................................................................	21	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAAACTCGTGAAGTGAACGAA......................................................................................................	21	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AGGAC---------CAAGACCTGGCGGA------------------------GG..........................	21	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................TTTTTG----CTTCAAACTCGTGAA...............................................................................................................	21	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TCAAACTCGTGAAGTGAACGA.......................................................................................................	21	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................AGATCAGGTCGATCTGGAGT.............................................................................	20	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................C------CT-TTTTTG----CTTCAAACTCGTGAA...............................................................................................................	24	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGTCGATCTGGAGGAC---------..................................................................	21	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TGAACGAAAAACGAGATCAGG.........................................................................................	21	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGTCGATCTGGAGGAC---------C.................................................................	22	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGCGGA------------------------GGAAGAGGA...................	18	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCACTTCCCGCTGGTCAA	21	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................AAACGAGATCAGGTCGATC...................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................GTGAACGAAAAACGAGATC............................................................................................	19	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAGGAC---------CAAGACCTGG........................................................	21	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGCACTTCCCGCTGGTC..	21	1	1.00	1	0	1	0	0	0

droVir3

T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAAGTGAGCGAGTGTAAGCCGCATCGAGATCTGAAGGAG---------GACGA---------------------------------------------------G---------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGTAAGCCGCATCGAGA.....................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTAAGCCGCATCGAGAT....................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATCTGAAGGAG---------GACG..............................................................	19	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AGTGAGCGAGTGTAAGCCGCA...........................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCCGCATCGAGATCT..................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTGAGCGAGTGTAAGC...............................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGAGCGAGTGTAAGC...............................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATCTGAAGGAG---------GAC...............................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGTGTAAGCCGCATCGAGATCT..................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTAAGCCGCATCGAGATCT..................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GCCGCATCGAGATCTGAAGGAG---------G.................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droMoj3

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGAGCGAGTGTGAAACACATCGTGATCCTAAGGAG---------GAAGA---------------------------------------------------A---------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGAAAGTGAGCGAGTGTAAGCAGCAACTAGACCAGAAGGA---------------------------------------------------------GAG------ACCTGAAGAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................GTGAGCGAGTGTAAGCAGCA...........................................................................................	20	1	1.00	1	0	1

dan_1997

scaffold_13266:14228734-14228884 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.9	-3.8	-3.8