dan_1954

CDS [Dana\GF13333-cds]; CDS [Dana\GF13333-cds]; exon [dana_GLEANR_13347:9]; exon [dana_GLEANR_13347:8]; intron [Dana\GF13333-in]

##################################################------------------------------------------------------------------------------################################################## GGATCAAGCAAAGGCTCTGGAGAAACGGGCTTTGGAAGAACAGAAAAGGAGTGCTTGAACCAAAAAACAAGTCAAAACTAAGTCTGAAAAGAAGTCGGAACAGGCCGAAGTATCTGAGGTCCTTGCAGAGAAAATATCTGAGAAGAAAGCAGAAGAAGCCAAGCAGCCGGAAGTCAAG ************************************************************************.........((....(((..((((......))))....)))..)).********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	V105 male body	M058 embryo	M044 female body	V055 head	V039 embryo
..........................................................................AAACTAAGTCTGAAAAGAAGT...................................................................................	21	0	2	1.00	2	2	0	0	0	0	0
.................................AGAAGAACAGAAAAGGAGTA.............................................................................................................................	20	2	3	0.33	1	0	1	0	0	0	0
.............................................................................CTAAGTCGGAAAGGAAGTGGG................................................................................	21	3	6	0.33	2	0	2	0	0	0	0
............................................................CAAAAAACAAGTCAAAACTAAGT...............................................................................................	23	0	3	0.33	1	0	0	1	0	0	0
..........................................................................................................................................................GAAGCCAAGCAGCCGGAAGTCAAG	24	0	7	0.29	2	2	0	0	0	0	0
....................................................................................................................................................GCAGAAGAAGCCAAGCAGCCGGA.......	23	0	4	0.25	1	1	0	0	0	0	0
...........................................................................AACTAAGTCTGAAAAGAAG....................................................................................	19	0	5	0.20	1	1	0	0	0	0	0
......................................................................................................GGCCGAAGTATCTGAGGT..........................................................	18	0	5	0.20	1	1	0	0	0	0	0
.........................................................................................................................................CTGAGAAGAAAGCAGAAGAAGC...................	22	0	5	0.20	1	0	1	0	0	0	0
.......................................................................................AAAGAATTCGGAACAGCACGA......................................................................	21	3	6	0.17	1	0	0	1	0	0	0
........................................................................................................................................................AAGAAGCCAAGCAGCCGGAAGT....	22	0	7	0.14	1	0	0	1	0	0	0
.............................................................................................................................................................GCCAAGCAGCCGGAAGTCAAG	21	0	7	0.14	1	0	0	0	0	0	1
..............................................................................................................................................AAGAAAGCAGAACAAGGCAA................	20	2	7	0.14	1	0	0	0	1	0	0
...............................................................................AAGTCGGGAAGGAAGTCGGAA..............................................................................	21	3	7	0.14	1	0	0	0	0	1	0
........................................................................................AAGAATTCGGAACAGGAC........................................................................	18	2	7	0.14	1	0	0	1	0	0	0
.......................................................................................................................................................GAAGAAGCCAAGCAGCCGGA.......	20	0	8	0.13	1	1	0	0	0	0	0
...................GTTAAACGTGCTTTGGAAG............................................................................................................................................	19	3	20	0.10	2	0	2	0	0	0	0
.................................................................................................................CTGAGGTCCTTGCAGAGAAAA............................................	21	0	10	0.10	1	1	0	0	0	0	0
..........................................................................................................GAAGTATCTGAGGTCCTTGCAGA.................................................	23	0	10	0.10	1	0	0	1	0	0	0
..........................................................................................................................................TGAGAAGAAAGCAGGTGAAC....................	20	3	19	0.05	1	0	0	1	0	0	0
..........................................................................................................GTAGTATCTGAGGTCCTTGC....................................................	20	1	19	0.05	1	0	0	1	0	0	0
................................................................................................GGGTCAGGCCGAAGTTTCT...............................................................	19	3	20	0.05	1	0	0	0	1	0	0
................................................................AAACAGGGCAGAACTAAGT...............................................................................................	19	3	20	0.05	1	0	0	0	0	1	0
........................ACGTGCTTTGGAAGAACCA.......................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0

CCTAGTTCGTTTCCGAGACCTCTTTGCCCGAAACCTTCTTGTCTTTTCCTCACGAACTTGGTTTTTTGTTCAGTTTTGATTCAGACTTTTCTTCAGCCTTGTCCGGCTTCATAGACTCCAGGAACGTCTCTTTTATAGACTCTTCTTTCGTCTTCTTCGGTTCGTCGGCCTTCAGTTC ********************************************************.........((....(((..((((......))))....)))..)).************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head
...................................................AGGCACTTGGTTTTCTGTT............................................................................................................	19	3	20	0.05	1	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13266:11865835-11866012 +	dan_1954	GGATCAAGCAAAGGCTCTGGAGAAACGGGCTTTGGAAGAACAGAAAAGGAGTGCTTGAACCAAAAAACAAGTCAAAACTAAGTCTGAAAAGAAGTCGGAACAGGCCGAAGTATCTGAGGTCCTTGCAGAGAAAATATCTGAGAAGAAAGCAGAAGAAGCCAAGCAGCCGG-AAGTCAAG
droBip1	scf7180000396547:610151-610328 -		AGATCAAGCAAAGGCTTTGGAGAAACAGGCTTTGGAAGAACAGAAGCTTGATGCGAAGACACACAAACAAGTCAAAACTAAATCTGACAATAAGTCAGAGAAGGCTGAAGTATCTGAGGTCCTTCCAGAGAAAATATCCGAGAAAAAAGCGGAAGAATCAAAGCAGCCAG-AAGTCAAG
droKik1	scf7180000302385:1089516-1089694 -		AAAGAAAGCAAAGGCTTTGGAGAAACAAACTCTCGAAGAACAGAAATTGGAAGCTGAGAAACAAAAACAAGCTGAGCAGGATATCAAGAAGAAGTCCGAAAAGGGAGATGTTTCTGAGGTTGCTGCAGAAAAGATATCCGAAGAAAGGATTGAAGAAGCCGAGAAACTTGTAAGTGAAG
droFic1	scf7180000453948:1111556-1111733 -		GGAGAAGGACAAGGAACTGGAAAAACAGATCCTGGAAGAAAAACAACTGGAAGCTGAGGCACAAAAGCAAGCCGACAAGGATGTCGAACTTCAATCCCAGAAACCAGAAGTATCTGAGGTCGTTGCAGAGAAGATATCTGAAGAAAAGATTGAAGAAGCCAAGAAGCCGG-AAGTTAAG
droEle1	scf7180000491107:865124-865301 -		GGAGAATGCTGAAGCTTTGGAGAAACAAGTTTTAGAGGAAAAGCAATTAGAAGCTGAGGCTCAAAAGCAAGCTGATAAAGATATTGAACAGAAATCACAGAAACCAGAAGTATCTGAAGTCGTTGCACAGAAAATATCCGAAGAAAAGATTGAAGAGCCTAAGAAGTCTG-AAATAAAG
droRho1	scf7180000779911:237190-237367 +		AGAGAAGGCAGAGGCTTTGGAGAAACAAGTCCTGGAAGAAAAACAATTGGAAGCTGGGGCACAAAAGCCAGCTGACAAAGATATTGAACAGAAATCCCATAAACCAGAAGTATCCGAAGTCGTTGCAGAGAAGATTACTGAAGAAAAGATTGATGAGCCCAAGAAGCCTG-AGATAAAG
droBia1	scf7180000302292:2032913-2033090 -		TAAGAAAGCAAAGGCTTCGGAGAAGAAACCGATTGAAGAAGAAAAACTGGAAGGCAAGAACCAAAAACAGGCTGAAGTTGCTGCTGACAAGAAAACTCAAAAGGCAGAAGTTTCCGAGGTGGTTGCAGAAAATATATCCGAAGAAAAGGTAGAAGAAAGTCAGAAGGCCG-AAATTAAG
droTak1	scf7180000415795:702350-702523 +		C----AGGCTGAGGCTTTGGAGAAGGAGATCCTGGAAGAAAAGCAATTGGAAGTTGAAGCTCAAAAGCAAGCTGACAAAGATGTCGAACAGAAGTCCCAGAAACCCGAAGAATCTGAGGTCGTTGCGGAAAAGATTTCAGAAGAAAGGATCGATGAACCCAAAAAGCCTG-AAATAAAG
droEug1	scf7180000409672:768536-768713 -		TAAGAAGGCTAAGGTCCTGGAGAAGAAGTCTGTCGAAGAAGAAAAAATTGACGAAAAGAAACAAAAGAAGGCTGAGGTCACTGCTGATAAGAAATCTGAACAGGCAGAGGTTTCCGAGGCTGTTGCTGAAAAGATTTCCGAAGAGAAGGTGGAAGAAAGCCGAAAAGCCG-AAGTTGAG
dm3	chr2R:11864313-11864490 -		AGAGAAAGCCACAGCCTTGGATAAGCAAGTCCTGGAAGAAAAGGAACTAGAGGCTAGTGCACAAAAGCAATGTGATCAGGATGTCGAAAAGAAGTCCCAGAAACCAGAAGTATCTGAGATCGTAGCTGAGAAAATATCTGAAAAAACAATTGAAGAGCCAAAGAAACCTG-AAGTAAAG
droSim2	2r:12530194-12530371 -		AGAGACAGCCACAGCCTTGGATAAGCAAGTCCTGGAAGAAAAAGAACTAGAGGCTAGTGCACAAAAACAAGGTCATCAGGATGTCGAAAAGAAGTCCCAGAAACCAGAAGTATCTGAGGTCGTAGCTGAGAAGATAACCGAAGAAAAGATTGAAGAACCAAAGAAACCTG-AAGTAAAG
droSec2	scaffold_1:9361058-9361235 -		AGAGACAGCCACAGCCTTGGATAAGCAAGTCCTGGAAGAAAAAGAACTAGAGGCTAGTGCACAAAAACAAGGTGATCAGGATGTGGAACAGAAGTCCCAGAAGCCAGAAGTATCTGAGGTCGTAGCTGAGAAAATATCTGAAGAAAAGGTTGAAGAACCAAAGAAACCTG-AAGTAAAG
droYak3	2R:17120134-17120311 +		AGAGAAAGCCGAAGTCTTGGATAAACAAGCCCTGGAAGAAAAGCAATTAGAGACTAGTACACAAAAGCAAGCTGATCAGGATGTCGAACAGAAGTCCCAGAAACCAGAAGTATCTGAGGTCGTATCTGAGAAGATATCTGAAGAAAAGGTTGAGGAACCCAAGAAACCTG-AAGTGAAG
droEre2	scaffold_4845:13995091-13995268 +		AGAGAAAGCCAAAGCCTTGGATAAACAAGCACTGGAAGAAAAGCAACTTGAGGATAGTGCACAAAAGCAAGCTGATCAGGATGCCGACCAGAAGTCCCAAAAACCAGAAGTATCTGAGGTCGTAGCTGAAAAGATATCTGAGGAAAAGATTGAAGAAACCAAGAAACCTG-AAGTAAAG
dp5	3:18967788-18967965 +		CCAGAAAGCAAAGGCTCTGGAGAAGCAACAACTCGAGGAGAAAAAACTTGAGGACAAGAAACAGAAGCAAACTGAAAAGGATGCCGAAAAGATGGCCCAGAAGGCAGAAGGATCTCAGGTTGTTGCTGAAAAGAAATCCAAAGAACAGGTAGAAGAAAGCAAGAAGACCG-ATGTCAAG
droWil2	scf2_1100000004558:878686-878863 -		TCAAAATGCCAAGGCTTTGGAAAAGAAATCCCTGGAACAAAAGGAACTGAATGCGAAGAAACAGAAGCAAGCCGAAAAAGATGCCGAGAAGAAGGCTGAACAAGGCGAAGTTTCTGAAGTTGTTGCCGAAAAGATAACTGAAGAAAAAGTGGAAGCGACACAGAAACCTG-GCGTAAAA
droVir3	scaffold_12875:19210690-19210867 -		CCAAAAGGCGAAGGTATTAGAACAACAATTAATTGAAGAGAAGAAACTGAATACCAAACAGAAGAAACAAGCCGAGAAAGATTCTGAAAAGAAACCCCAGAAGGGAGAAGTATCTGAAGTCGTTGCAGAGAAGGTTTCCGAAGAAAACGTTCCTGAGAGTAAGAAGCTTG-AAGTAAAG
droMoj3	scaffold_6496:10715221-10715398 +		TCAAAAGGCAAAGGTACTCGAAAAAGAATCAGCCGAAGAGCAAAAACTGGATGCAAAAAAGAAAGATCAGAGTCAAAAAGAAGCTGAAGCGAAAGCCCAAAAGGGAGAAGTATCTGAAGTCATGACTGAGAAAGTATCGGAAGAGAAAATCCCCGAGACTAAGAGACCTG-AAGTTAAG
droGri2	scaffold_15245:16813446-16813623 -		TCAAAAGGCAAAGATTCTGGAGCAACAGTCTATTGAAGAGCAGAAGTTGGACACAAAGCAAAAGAAAAAGTCTGAAAAGGATGCTGAAAAGAAGGCCCAGAAGGGTGAAGTATCTGAAGTTGTTGCTGAGAAAGTATCTGAAGAAAAGACTCCAGAAAGTAAGAAGCCGG-ATGTCAAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GGATCAAGCAAAGGCTCTGGAGAAACGGGCTTTGGAAGAACAGAAAAGGAGTGCTTGAACCAAAAAACAAGTCAAAACTAAGTCTGAAAAGAAGTCGGAACAGGCCGAAGTATCTGAGGTCCTTGCAGAGAAAATATCTGAGAAGAAAGCAGAAGAAGCCAAGCAGCCGG-AAGTCAAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................AAACTAAGTCTGAAAAGAAGT....................................................................................	21	2	1.00	2	0	0	0	0	0	2
............................................................CAAAAAACAAGTCAAAACTAAGT................................................................................................	23	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................................................GAAGCCAAGCAGCCGG-AAGTCAAG	24	7	0.29	2	0	0	0	0	0	2
....................................................................................................................................................GCAGAAGAAGCCAAGCAGCCGG-A.......	23	4	0.25	1	0	0	0	0	0	1
...........................................................................AACTAAGTCTGAAAAGAAG.....................................................................................	19	5	0.20	1	0	0	0	0	0	1
......................................................................................................GGCCGAAGTATCTGAGGT...........................................................	18	5	0.20	1	0	0	0	0	0	1
.........................................................................................................................................CTGAGAAGAAAGCAGAAGAAGC....................	22	5	0.20	1	0	0	0	0	1	0
........................................................................................................................................................AAGAAGCCAAGCAGCCGG-AAGT....	22	7	0.14	1	0	1	0	0	0	0
.............................................................................................................................................................GCCAAGCAGCCGG-AAGTCAAG	21	7	0.14	1	0	0	1	0	0	0
.......................................................................................................................................................GAAGAAGCCAAGCAGCCGG-A.......	20	8	0.13	1	0	0	0	0	0	1
.................................................................................................................CTGAGGTCCTTGCAGAGAAAA.............................................	21	10	0.10	1	0	0	0	0	0	1
..........................................................................................................GAAGTATCTGAGGTCCTTGCAGA..................................................	23	10	0.10	1	0	1	0	0	0	0

droBip1

AGATCAAGCAAAGGCTTTGGAGAAACAGGCTTTGGAAGAACAGAAGCTTGATGCGAAGACACACAAACAAGTCAAAACTAAATCTGACAATAAGTCAGAGAAGGCTGAAGTATCTGAGGTCCTTCCAGAGAAAATATCCGAGAAAAAAGCGGAAGAATCAAAGCAGCCAG-AAGTCAAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAGAAAGCAAAGGCTTTGGAGAAACAAACTCTCGAAGAACAGAAATTGGAAGCTGAGAAACAAAAACAAGCTGAGCAGGATATCAAGAAGAAGTCCGAAAAGGGAGATGTTTCTGAGGTTGCTGCAGAAAAGATATCCGAAGAAAGGATTGAAGAAGCCGAGAAACTTGTAAGTGAAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGAGAAGGACAAGGAACTGGAAAAACAGATCCTGGAAGAAAAACAACTGGAAGCTGAGGCACAAAAGCAAGCCGACAAGGATGTCGAACTTCAATCCCAGAAACCAGAAGTATCTGAGGTCGTTGCAGAGAAGATATCTGAAGAAAAGATTGAAGAAGCCAAGAAGCCGG-AAGTTAAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGAGAATGCTGAAGCTTTGGAGAAACAAGTTTTAGAGGAAAAGCAATTAGAAGCTGAGGCTCAAAAGCAAGCTGATAAAGATATTGAACAGAAATCACAGAAACCAGAAGTATCTGAAGTCGTTGCACAGAAAATATCCGAAGAAAAGATTGAAGAGCCTAAGAAGTCTG-AAATAAAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGAGAAGGCAGAGGCTTTGGAGAAACAAGTCCTGGAAGAAAAACAATTGGAAGCTGGGGCACAAAAGCCAGCTGACAAAGATATTGAACAGAAATCCCATAAACCAGAAGTATCCGAAGTCGTTGCAGAGAAGATTACTGAAGAAAAGATTGATGAGCCCAAGAAGCCTG-AGATAAAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAAGAAAGCAAAGGCTTCGGAGAAGAAACCGATTGAAGAAGAAAAACTGGAAGGCAAGAACCAAAAACAGGCTGAAGTTGCTGCTGACAAGAAAACTCAAAAGGCAGAAGTTTCCGAGGTGGTTGCAGAAAATATATCCGAAGAAAAGGTAGAAGAAAGTCAGAAGGCCG-AAATTAAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C----AGGCTGAGGCTTTGGAGAAGGAGATCCTGGAAGAAAAGCAATTGGAAGTTGAAGCTCAAAAGCAAGCTGACAAAGATGTCGAACAGAAGTCCCAGAAACCCGAAGAATCTGAGGTCGTTGCGGAAAAGATTTCAGAAGAAAGGATCGATGAACCCAAAAAGCCTG-AAATAAAG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TAAGAAGGCTAAGGTCCTGGAGAAGAAGTCTGTCGAAGAAGAAAAAATTGACGAAAAGAAACAAAAGAAGGCTGAGGTCACTGCTGATAAGAAATCTGAACAGGCAGAGGTTTCCGAGGCTGTTGCTGAAAAGATTTCCGAAGAGAAGGTGGAAGAAAGCCGAAAAGCCG-AAGTTGAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGAGAAAGCCACAGCCTTGGATAAGCAAGTCCTGGAAGAAAAGGAACTAGAGGCTAGTGCACAAAAGCAATGTGATCAGGATGTCGAAAAGAAGTCCCAGAAACCAGAAGTATCTGAGATCGTAGCTGAGAAAATATCTGAAAAAACAATTGAAGAGCCAAAGAAACCTG-AAGTAAAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................GAAGTATCTGAGATCGTAGCTGAGA................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TGTGATCAGGATGTCGAAAAGA.......................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GTATCTGAGATCGTAGCTGAGAAAATA...........................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ATGTGATCAGGATGTCGAAAAGA.......................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................ATGTGATCAGGATGTCGAAAAG........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................AAAGCAATGTGATCAGGATGTCG.............................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................TTGGATAAGCAAGTCCTGGAAGAAAA.........................................................................................................................................	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ATAAGCAAGTCCTGGAAGAAA..........................................................................................................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGAGACAGCCACAGCCTTGGATAAGCAAGTCCTGGAAGAAAAAGAACTAGAGGCTAGTGCACAAAAACAAGGTCATCAGGATGTCGAAAAGAAGTCCCAGAAACCAGAAGTATCTGAGGTCGTAGCTGAGAAGATAACCGAAGAAAAGATTGAAGAACCAAAGAAACCTG-AAGTAAAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................AAAAACAAGGTCATCAGGATGT...............................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TGCACAAAAACAAGGTCATCAGGA..................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CGAAGAAAAGATTGAAGAACCAAA.................	24	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GTCGTAGCTGAGAAGATAACCGAAGA...................................	26	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GTCGAAAAGAAGTCCCAGAA.............................................................................	20	5	0.40	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................AACCAGAAGTATCTGAGGTCGTAGCT....................................................	26	6	0.33	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................AGAAAAGATTGAAGAACC....................	18	12	0.33	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................ATCTGAGGTCGTAGCTGAG.................................................	19	10	0.30	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GTCGTAGCTGAGAAGATAAC.........................................	20	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CTGAGGTCGTAGCTGAGAAGATA...........................................	23	10	0.20	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GTCGAAAAGAAGTCCCAGG..............................................................................	19	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TGAGGTCGTAGCTGAGAA...............................................	18	10	0.20	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AAGTATCTGAGGTCGTAGC.....................................................	19	11	0.18	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTTGGATAAGCAAGTCCTGGAAGAAAAAG.......................................................................................................................................	29	6	0.17	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................ATCTGAGGTCGTAGCTGA..................................................	18	12	0.17	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATTGAAGAACCAAAGAAACCT..........	21	12	0.17	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AGCAAGTCCTGGAAGAAAAAGA......................................................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................ATAAGCAAGTCCTGGAAGAAAAAG.......................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................AAGATTGAAGAACCAAAGAAAC............	22	13	0.15	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GAAAAGATTGAAGAACCAAAGAA..............	23	13	0.15	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................AGATTGAAGAACCAAAGAAACC...........	22	13	0.15	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AGAAGTATCTGAGGTCGTAGCT....................................................	22	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AGAAGTATCTGAGGTCGT........................................................	18	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTCCTGGAAGAAAAAGAACT...................................................................................................................................	20	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GTATCTGAGGTCGTAGCTGAGA................................................	22	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GTATCTGAGGTCGTAGCTGAGAAG..............................................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................GAAGTATCTGAGGTCGTAGCTGAGAA...............................................	26	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................AGTATCTGAGGTCGTAGCTGAGA................................................	23	9	0.11	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................ATCTGAGGTCGTAGCTGAGAAGG.............................................	23	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................ATCTGAGGTCGTAGCTGAGAAGATA...........................................	25	10	0.10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TATCTGAGGTCGTAGCTGAGAAG..............................................	23	10	0.10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................ATCTGAGGTCGTAGCTGAGAAGA.............................................	23	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TCTGAGGTCGTAGCTGAGAAGATA...........................................	24	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......AGCCACAGCCTTGGATAAGCA........................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................AGAACCAAAGAAACCTG-AAGTAAAG	25	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TATCTGAGGTCGTAGCTGAGAAGATA...........................................	26	10	0.10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ACAGCCTTGGATAAGCAAGT.....................................................................................................................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................ATCTGAGGTCGTAGCTGAGAAGAT............................................	24	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TGAAGAACCAAAGAAACCTG-AAGTAAA.	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATTGAAGAACCAAAGAAACCTG-AAGG....	26	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................AAAGATTGAAGAACCAAAGAAACCTG-AA......	28	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TGAAGAACCAAAGAAACCTG-AA......	22	11	0.09	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................GAAGTATCTGAGGTCGTAGC.....................................................	20	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................GAAGAAAAGATTGAAGAACCAAAGAA..............	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATTGAAGAACCAAAGAAACCTG-AAGT....	26	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GAGGTCGTAGCTGAGAAGAT............................................	20	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GTATCTGAGGTCGTAGCT....................................................	18	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GATTGAAGAACCAAAGAAACCT..........	22	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TATCTGAGGTCGTAGCTG...................................................	18	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GAAGAACCAAAGAAACCT..........	18	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................AAAAGATTGAAGAACCAAAGAAACCT..........	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AAGAAAAGATTGAAGAACC....................	19	12	0.08	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AAGATTGAAGAACCAAAGAAACCT..........	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................ATCTGAGGTCGTAGCTGG..................................................	18	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GAAAAGATTGAAGAACCAAAGAAACCT..........	27	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................AAAGATTGAAGAACCAAAGAAACCT..........	25	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AAGATTGAAGAACCAAAGAAA.............	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TGAAGAACCAAAGAAACC...........	18	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GATTGAAGAACCAAAGAA..............	18	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GAAAAGATTGAAGAACCAAAGAAACC...........	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGAGACAGCCACAGCCTTGGATAAGCAAGTCCTGGAAGAAAAAGAACTAGAGGCTAGTGCACAAAAACAAGGTGATCAGGATGTGGAACAGAAGTCCCAGAAGCCAGAAGTATCTGAGGTCGTAGCTGAGAAAATATCTGAAGAAAAGGTTGAAGAACCAAAGAAACCTG-AAGTAAAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................AAATATCTGAAGAAAAGGTT............................	20	1	1.00	1	0	0	1	0
...............................................................................................................ATCTGAGGTCGTAGCTGAGAAA..............................................	22	1	1.00	1	0	0	1	0
....................................................................AAGGTGATCAGGATGTGGAACA.........................................................................................	22	5	0.60	3	0	2	1	0
.....................................................................AGGTGATCAGGATGTGGAACA.........................................................................................	21	5	0.60	3	0	2	0	1
.....................................................................AGGTGATCAGGATGTGGAACAGAA......................................................................................	24	5	0.40	2	0	0	0	2
.................................................................AACAAGGTGATCAGGATGTGG.............................................................................................	21	4	0.25	1	0	1	0	0
...............................................................AAAACAAGGTGATCAGGATGTGGAACA.........................................................................................	27	4	0.25	1	0	0	1	0
................................................................AAACAAGGTGATCAGGATGTGGAA...........................................................................................	24	4	0.25	1	0	1	0	0
.....................................................................AGGTGATCAGGATGTGGAACAGA.......................................................................................	23	5	0.20	1	0	1	0	0
....................................................................AAGGTGATCAGGATGTGGAAC..........................................................................................	21	5	0.20	1	0	1	0	0
.................................................................AACAAGGTGATCAGGATGTG..............................................................................................	20	5	0.20	1	0	0	0	1
.....................................................................................................AGCCAGAAGTATCTGAGGTCG.........................................................	21	6	0.17	1	0	1	0	0
......................................................................GGTGATCAGGATGTGGAACAGAAG.....................................................................................	24	6	0.17	1	0	1	0	0
......................................................................GGTGATCAGGATGTGGAAC..........................................................................................	19	6	0.17	1	0	0	0	1
.........................................................................GATCAGGATGTGGAACAGAAGTCCC.................................................................................	25	6	0.17	1	0	1	0	0
.....CAGCCACAGCCTTGGATAAGCAAGTCCT..................................................................................................................................................	28	6	0.17	1	0	0	1	0
............................................................................CAGGATGTGGAACAGAAGTCCCAGAA.............................................................................	26	6	0.17	1	0	1	0	0
.................................................................................TGTGGAACAGAAGTCCCA................................................................................	18	6	0.17	1	0	0	1	0
.....................TAAGCAAGTCCTGGAAGAA...........................................................................................................................................	19	12	0.17	2	0	0	2	0
......AGCCACAGCCTTGGATAAGCAAGTCC...................................................................................................................................................	26	9	0.11	1	0	1	0	0
.......GCCACAGCCTTGGATAAGCAA.......................................................................................................................................................	21	9	0.11	1	0	1	0	0
................................................................AAACAAGGTGATCAGGATG................................................................................................	19	9	0.11	1	0	0	1	0
........CCACAGCCTTGGATAAGCAAGTCT...................................................................................................................................................	24	10	0.10	1	0	1	0	0
..........ACAGCCTTGGATAAGCAAGTCCTGGAA..............................................................................................................................................	27	11	0.09	1	0	0	1	0
..........................................................................................................GAAGTATCTGAGGTCGTAGCT....................................................	21	12	0.08	1	0	1	0	0
...................GATAAGCAAGTCCTGGAAGAAAAA........................................................................................................................................	24	12	0.08	1	0	1	0	0
..........ACAGCCTTGGATAAGCAAG......................................................................................................................................................	19	12	0.08	1	0	0	0	1
...........................................................................................................AAGTATCTGAGGTCGTAGCTG...................................................	21	12	0.08	1	0	1	0	0
...............CTTGGATAAGCAAGTCCTGGAAGA............................................................................................................................................	24	12	0.08	1	0	0	1	0
...................GATAAGCAAGTCCTGGAAGAA...........................................................................................................................................	21	12	0.08	1	0	1	0	0
...............CTTGGATAAGCAAGTCCTGGAAGAA...........................................................................................................................................	25	12	0.08	1	0	1	0	0
..............................................................................................................TATCTGAGGTCGTAGCTG...................................................	18	12	0.08	1	0	0	1	0
.............................................................................................................GTATCTGAGGTCGTAGCTGAGAA...............................................	23	12	0.08	1	1	0	0	0
...............................................................................................................ATCTGAGGTCGTAGCTGAGAA...............................................	21	12	0.08	1	1	0	0	0
............................................................................................................AGTATCTGAGGTCGTAGCT....................................................	19	12	0.08	1	0	1	0	0

droYak3

AGAGAAAGCCGAAGTCTTGGATAAACAAGCCCTGGAAGAAAAGCAATTAGAGACTAGTACACAAAAGCAAGCTGATCAGGATGTCGAACAGAAGTCCCAGAAACCAGAAGTATCTGAGGTCGTATCTGAGAAGATATCTGAAGAAAAGGTTGAGGAACCCAAGAAACCTG-AAGTGAAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................CAAGCTGATCAGGATGTCGAACAGAAG.....................................................................................	27	10	3.20	32	0	1	0	0	0	0	0	0	0	0	31
....................................................................AAGCTGATCAGGATGTCGAACAGA.......................................................................................	24	10	1.20	12	0	0	0	0	0	0	0	0	0	0	12
........................................................................................................................................TCTGAAGAAAAGGTTGAGGAACCC...................	24	3	1.00	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................................CTGATCAGGATGTCGAACAGAAGTCC..................................................................................	26	10	0.70	7	0	4	3	0	0	0	0	0	0	0	0
...........................................................................................................AAGTATCTGAGGTCGTATCTGAGA................................................	24	10	0.70	7	0	0	0	0	0	0	0	0	0	0	7
...................................................................CAAGCTGATCAGGATGTCGAACAG........................................................................................	24	10	0.40	4	0	2	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................GAACCCAAGAAACCTG-AAGTGAA.	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................ACACAAAAGCAAGCTGATCAGGAT.................................................................................................	24	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................GTTGAGGAACCCAAGAAACCT..........	21	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TCTGAAGAAAAGGTTGAGGAACCCA..................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.......................................AAAGCAATTAGAGACTAGTACACA....................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................TGAGGTCGTATCTGAGAAGATATC.........................................	24	10	0.30	3	0	1	1	1	0	0	0	0	0	0	0
...................................................................CAAGCTGATCAGGATGTCGAACA.........................................................................................	23	11	0.27	3	0	2	0	1	0	0	0	0	0	0	0
...........................................................CACAAAAGCAAGCTGATCAGGATG................................................................................................	24	16	0.25	4	0	4	0	0	0	0	0	0	0	0	0
................................................................AAGCAAGCTGATCAGGATGTCGAACAGA.......................................................................................	28	9	0.22	2	2	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AAGTATCTGAGGTCGTATC.....................................................	19	10	0.20	2	1	0	0	0	0	0	1	0	0	0	0
....................................................................AAGCTGATCAGGATGTCGAACAG........................................................................................	23	10	0.20	2	0	1	0	0	0	0	1	0	0	0	0
...................................................................................................................GAGGTCGTATCTGAGAAGATATC.........................................	23	10	0.20	2	0	1	1	0	0	0	0	0	0	0	0
....................................AGAAAAGCAATTAGAGACTAGT.........................................................................................................................	22	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................TCCCAGAAACCAGAAGTATCTGAGG............................................................	25	11	0.18	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................GAGAAGATATCTGAAGAAAAG...............................	21	12	0.17	2	1	0	0	0	0	0	1	0	0	0	0
..............................CCTGGAAGAAAAGCAATTAGAGAC.............................................................................................................................	24	6	0.17	1	0	0	0	0	0	1	0	0	0	0	0
.....................................................................AGCTGATCAGGATGTCGAAC..........................................................................................	20	12	0.17	2	1	0	0	1	0	0	0	0	0	0	0
.......................AACAAGCCCTGGAAGAAAAGCAATT...................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................GTCGAACAGAAGTCCCAGAAACCAGAAG.....................................................................	28	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................GAACAGAAGTCCCAGAAACCAGAA......................................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
....................ATAAACAAGCCCTGGAAGAAAAGC.......................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................CACAAAAGCAAGCTGATCAGGATGT...............................................................................................	25	16	0.13	2	0	1	1	0	0	0	0	0	0	0	0
................................................................................ATGTCGAACAGAAGTCCCAGAAACC..........................................................................	25	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................TCGTATCTGAGAAGATATCTGAAG....................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................CGAACAGAAGTCCCAGAAACCA.........................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................GTCGAACAGAAGTCCCAGAAACCA.........................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................GTCGAACAGAAGTCCCAGAAACC..........................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................GAAGTATCTGAGGTCGTAT......................................................	19	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................TTGAGGAACCCAAGAAACCTG-AAG.....	24	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................GAGGAACCCAAGAAACCTG-AA......	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................ACCAGAAGTATCTGAGGTCGTATCT....................................................	25	9	0.11	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................ACCAGAAGTATCTGAGGTCGTATCTGA..................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.GAGAAAGCCGAAGTCTTGGAT.............................................................................................................................................................	21	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................GCTGATCAGGATGTCGAACAGAAGTCC..................................................................................	27	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................TATCTGAGAAGATATCTGAAGAA..................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................AAGTATCTGAGGTCGTATCTGAG.................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................AGCAAGCTGATCAGGATGTCGAACA.........................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................AGCTGATCAGGATGTCGAACAG........................................................................................	22	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................TATCTGAGGTCGTATCTGAGAAGATATC.........................................	28	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................GAGGTCGTATCTGAGAAGA.............................................	19	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................GATCAGGATGTCGAACAGA.......................................................................................	19	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................CTGATCAGGATGTCGAACAGAAG.....................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................AGCTGATCAGGATGTCGAACA.........................................................................................	21	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................AAGCTGATCAGGATGTCGAACA.........................................................................................	22	11	0.09	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................AGCAAGCTGATCAGGATGTCGAAC..........................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................GAAACCAGAAGTATCTGAGGT...........................................................	21	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
................................................................AAGCAAGCTGATCAGGATGTCGA............................................................................................	23	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................GTCGAACAGAAGTCCCAGA..............................................................................	19	12	0.08	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................ATGTCGAACAGAAGTCCCA................................................................................	19	12	0.08	1	0	0	0	1	0	0	0	0	0	0	0
..........................................................................ATCAGGATGTCGAACAGAAGTC...................................................................................	22	12	0.08	1	0	0	0	1	0	0	0	0	0	0	0
.................................................................................TGTCGAACAGAAGTCCCAGA..............................................................................	20	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................CCAGAAGTATCTGAGGTC..........................................................	18	13	0.08	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................CACAAAAGCAAGCTGATCAGGA..................................................................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................CACAAAAGCAAGCTGATCAGGAT.................................................................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................CACAAAAGCAAGCTGATCAGG...................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
............................................................ACAAAAGCAAGCTGATCAGGATG................................................................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................CACAAAAGCAAGCTGATCAGGATGTC..............................................................................................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................AAAGCAAGCTGATCAGGATGTCG.............................................................................................	23	16	0.06	1	0	0	0	0	0	0	1	0	0	0	0
............................................................ACAAAAGCAAGCTGATCAGGAT.................................................................................................	22	16	0.06	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................CACAAAAGCAAGCTGATCAGGATA................................................................................................	24	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................GCAAGCTGATCAGGATGTC..............................................................................................	19	17	0.06	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AGAGAAAGCCAAAGCCTTGGATAAACAAGCACTGGAAGAAAAGCAACTTGAGGATAGTGCACAAAAGCAAGCTGATCAGGATGCCGACCAGAAGTCCCAAAAACCAGAAGTATCTGAGGTCGTAGCTGAAAAGATATCTGAGGAAAAGATTGAAGAAACCAAGAAACCTG-AAGTAAAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................TATCTGAGGTCGTAGCTGAAAAGATATCT........................................	29	1	2.00	2	0	0	0	0	0	0	2
...............................................................................................................ATCTGAGGTCGTAGCTGAAAA...............................................	21	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................CTGAGGTCGTAGCTGAAAA...............................................	19	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................TTGAAGAAACCAAGAAACCT..........	20	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................TCTGAGGTCGTAGCTGAAA................................................	19	1	1.00	1	0	0	0	0	1	0	0
.................................................................................TGCCGACCAGAAGTCCCAAA..............................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...........................................................................TCAGGATGCCGACCAGAA......................................................................................	18	2	0.50	1	0	0	0	0	0	1	0
........................................................................TGATCAGGATGCCGACCAGAAGTCC..................................................................................	25	2	0.50	1	1	0	0	0	0	0	0
AGAGAAAGCCAAAGCCTTGGAT.............................................................................................................................................................	22	8	0.25	2	1	0	0	0	0	1	0
.................................................................AGCAAGCTGATCAGGATGCCGACCA.........................................................................................	25	5	0.20	1	1	0	0	0	0	0	0
......................................................................GCTGATCAGGATGCCGACC..........................................................................................	19	5	0.20	1	0	0	0	0	1	0	0
............AGCCTTGGATAAACAAGCACTGGAAGA............................................................................................................................................	27	8	0.13	1	1	0	0	0	0	0	0
...........................................................CACAAAAGCAAGCTGATCAGGAT.................................................................................................	23	8	0.13	1	0	0	0	0	1	0	0
...............................................................AAAGCAAGCTGATCAGGAT.................................................................................................	19	9	0.11	1	0	0	0	0	1	0	0
...........................................................CACAAAAGCAAGCTGATCAGG...................................................................................................	21	9	0.11	1	1	0	0	0	0	0	0
.............................................ACTTGAGGATAGTGCACAAAAGC...............................................................................................................	23	9	0.11	1	1	0	0	0	0	0	0
............................................AACTTGAGGATAGTGCACAAAAG................................................................................................................	23	9	0.11	1	0	0	0	0	1	0	0
....AAAGCCAAAGCCTTGGATAAACAAGCA....................................................................................................................................................	27	10	0.10	1	0	0	0	0	0	1	0
.......GCCAAAGCCTTGGATAAACA........................................................................................................................................................	20	11	0.09	1	1	0	0	0	0	0	0
...............................CTGGAAGAAAAGCAACTTGAGGATAGT.........................................................................................................................	27	11	0.09	1	0	0	0	0	0	1	0
.........................CAAGCACTGGAAGAAAAGCAACT...................................................................................................................................	23	11	0.09	1	0	0	0	0	0	1	0
..................................GAAGAAAAGCAACTTGAGGATAGTGC.......................................................................................................................	26	11	0.09	1	0	0	0	0	1	0	0
..........................AAGCACTGGAAGAAAAGCAACTTGAG...............................................................................................................................	26	11	0.09	1	0	0	0	0	1	0	0
......................AAACAAGCACTGGAAGAAAAGC.......................................................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0
..................................................................................................................................AAGATATCTGAGGAAAAGA..............................	19	11	0.09	1	0	0	0	0	1	0	0
......................AAACAAGCACTGGAAGAAAAGCAACTT..................................................................................................................................	27	11	0.09	1	0	0	0	0	1	0	0
............................................AACTTGAGGATAGTGCAC.....................................................................................................................	18	11	0.09	1	0	0	0	0	0	1	0
.........................................................................................................AGAAGTATCTGAGGTCGTAGCT....................................................	22	11	0.09	1	0	0	0	0	1	0	0
..........................................................................................................GAAGTATCTGAGGTCGTAGCT....................................................	21	11	0.09	1	0	0	0	0	1	0	0
..............................ACTGGAAGAAAAGCAACTTGAGGA.............................................................................................................................	24	11	0.09	1	1	0	0	0	0	0	0
..........................................................................................................GAAGTATCTGAGGTCGTAGC.....................................................	20	11	0.09	1	0	1	0	0	0	0	0
..............................................................................................................TATCTGAGGTCGTAGCTGA..................................................	19	12	0.08	1	0	0	0	0	1	0	0
.................................GGAAGAAAAGCAACTTGAG...............................................................................................................................	19	13	0.08	1	1	0	0	0	0	0	0

dp5

CCAGAAAGCAAAGGCTCTGGAGAAGCAACAACTCGAGGAGAAAAAACTTGAGGACAAGAAACAGAAGCAAACTGAAAAGGATGCCGAAAAGATGGCCCAGAAGGCAGAAGGATCTCAGGTTGTTGCTGAAAAGAAATCCAAAGAACAGGTAGAAGAAAGCAAGAAGACCG-ATGTCAAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................AGGTAGAAGAAAGCAAGAAGACC..........	23	1	3.00	3	0	0	0	0	0	0	0	0	3	0
............................................................................................................................................AAGAACAGGTAGAAGAAAGCAAGAAG.............	26	2	1.50	3	0	0	0	0	0	0	0	0	3	0
.....................................................................................................................................AAATCCAAAGAACAGGTAGAAGAAA.....................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................AGGATCTCAGGTTGTTGCT....................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................CAGGTAGAAGAAAGCAAGAAGACCG-........	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................CAGAAGGATCTCAGGTTGTTG......................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................GAACAGGTAGAAGAAAGCA..................	19	2	0.50	1	0	0	0	0	0	1	0	0	0	0
.......GCAAAGGCTCTGGAGAAGCA........................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1	0	0	0	0
..........AAGGCTCTGGAGAAGCAACAACT..................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	1	0
..................................................................................GCCGAAAAGATGGCCCAGAAG............................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................CTGGAGAAGCAACAACTCGAGG.............................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................AGATGGCCCAGAAGGCAGA.......................................................................	19	3	0.33	1	0	0	0	0	0	1	0	0	0	0
.................................................GAGGACAAGAAACAGAAGCAAACT..........................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	1
....................AGAAGCAACAACTCGAGGA............................................................................................................................................	19	3	0.33	1	0	0	0	0	0	1	0	0	0	0
..................GGAGAAGCAACAACTCGAGGAGA..........................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0

droWil2

TCAAAATGCCAAGGCTTTGGAAAAGAAATCCCTGGAACAAAAGGAACTGAATGCGAAGAAACAGAAGCAAGCCGAAAAAGATGCCGAGAAGAAGGCTGAACAAGGCGAAGTTTCTGAAGTTGTTGCCGAAAAGATAACTGAAGAAAAAGTGGAAGCGACACAGAAACCTG-GCGTAAAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................CTGAACAAGGCGAAGTTTCT................................................................	20	3	1.00	3	3	0	0	0	0
...................................................................................................................................................AGTGGAAGCGACACAGAAACCTG-GCGT....	27	2	1.00	2	2	0	0	0	0
...................................................................................................................................................AGTGGAAGCGACACAGAAACCTG-GC......	25	2	0.50	1	0	0	1	0	0
........................................................AGAAACAGAAGCAAGCCGAAAAAGA..................................................................................................	25	20	0.35	7	0	4	0	3	0
................................................................................................TGAACAAGGCGAAGTTTCTGAAGTT..........................................................	25	3	0.33	1	0	0	1	0	0
................................................................................................TGAACAAGGCGAAGTTTCT................................................................	19	3	0.33	1	1	0	0	0	0
..................................................................................................................................................AAGTGGAAGCGACACAGAAACCT..........	23	3	0.33	1	0	0	1	0	0
...................................................................................CCGAGAAGAAGGCTGAACAAGGC.........................................................................	23	4	0.25	1	0	0	0	0	1
...............................................................................................................................................................ACAGAAACCTG-GCGTAAAA	19	4	0.25	1	0	1	0	0	0
.................................................................................................................CTGAAGTTGTTGCCGAAAA...............................................	19	4	0.25	1	0	0	0	1	0
....................................................................................................................................GATAACTGAAGAAAAAGTGGAAGCGAC....................	27	4	0.25	1	0	1	0	0	0
......................................................................................AGAAGAAGGCTGAACAAGGCGAAGT....................................................................	25	4	0.25	1	0	1	0	0	0
....................................................................................................................................GATAACTGAAGAAAAAGTGGAAGC.......................	24	4	0.25	1	0	0	0	1	0
.....................................................................................................AAGGCGAAGTTTCTGAAGT...........................................................	19	4	0.25	1	0	0	0	1	0
..........................................................................................................................................TGAAGAAAAAGTGGAAGC.......................	18	4	0.25	1	0	0	0	1	0
....................................................................................CGAGAAGAAGGCTGAACA.............................................................................	18	4	0.25	1	1	0	0	0	0
...........................................................................AAAAGATGCCGAGAAGAAGGCTGAACA.............................................................................	27	4	0.25	1	0	0	1	0	0
...................................................................................................................................AGATAACTGAAGAAAAAGTGGAAGC.......................	25	4	0.25	1	0	1	0	0	0
....................................................................................................................................GATAACTGAAGAAAAAGTGGAAGCGACA...................	28	4	0.25	1	0	0	1	0	0
..............................................................................AGATGCCGAGAAGAAGGCTGAACA.............................................................................	24	4	0.25	1	1	0	0	0	0
..........................................................................................................GAAGTTTCTGAAGTTGTTGCCGAAA................................................	25	4	0.25	1	0	0	0	1	0
.....................................................................................................AAGGCGAAGTTTCTGAAGTT..........................................................	20	4	0.25	1	0	1	0	0	0
......................................................................................................AGGCGAAGTTTCTGAAGTT..........................................................	19	4	0.25	1	1	0	0	0	0
...................................................................................CCGAGAAGAAGGCTGAACA.............................................................................	19	4	0.25	1	0	1	0	0	0
......................................................................................................AGGCGAAGTTTCTGAAGTTGTT.......................................................	22	4	0.25	1	0	0	1	0	0
.........................................................................................................................GTTGCCGAAAAGATAACTGAAGAA..................................	24	20	0.15	3	0	0	0	3	0
.........................................................................................................................GTTGCCGAAAAGATAACTGAAGA...................................	23	20	0.15	3	0	1	0	2	0
..............................................................................................................................CGAAAAGATAACTGAAGAAAAAGT.............................	24	20	0.10	2	0	1	1	0	0
............................................................................AAAGATGCCGAGAAGAAG.....................................................................................	18	20	0.10	2	0	0	0	2	0
.......................................................................CCGAAAAAGATGCCGAGAAGAAGGC...................................................................................	25	12	0.08	1	0	1	0	0	0
.......................................................................CCGAAAAAGATGCCGAGAAGAAGG....................................................................................	24	12	0.08	1	0	1	0	0	0
........................................................................CGAAAAAGATGCCGAGAAGAAGGCT..................................................................................	25	12	0.08	1	0	0	1	0	0
....................................................................AAGCCGAAAAAGATGCCGAGAAGAAGGCT..................................................................................	29	12	0.08	1	0	0	0	1	0
............................................................................AAAGATGCCGAGAAGAAGGCT..................................................................................	21	13	0.08	1	0	0	1	0	0
.........................................................................GAAAAAGATGCCGAGAAGAAGGCT..................................................................................	24	13	0.08	1	0	0	0	1	0
............................................................................AAAGATGCCGAGAAGAAGG....................................................................................	19	13	0.08	1	0	0	0	1	0
...........................................................................AAAAGATGCCGAGAAGAAGGCT..................................................................................	22	13	0.08	1	0	0	0	1	0
.............................................................CAGAAGCAAGCCGAAAAAGATGC...............................................................................................	23	20	0.05	1	0	0	1	0	0
.............................................................CAGAAGCAAGCCGAAAAAGATGCC..............................................................................................	24	20	0.05	1	0	0	0	0	1
.........................................................................................................................GTTGCCGAAAAGATAACTGAAGAAAAAGT.............................	29	20	0.05	1	0	0	1	0	0
...........................................................................................................................TGCCGAAAAGATAACTGAAGAA..................................	22	20	0.05	1	0	0	0	1	0
...........................................................AACAGAAGCAAGCCGAAAA.....................................................................................................	19	20	0.05	1	0	0	1	0	0
.........................................................................................................................GTTGCCGAAAAGATAACTGAA.....................................	21	20	0.05	1	0	0	0	0	1
......................................................GAAGAAACAGAAGCAAGCCGAAC......................................................................................................	23	20	0.05	1	1	0	0	0	0
..........................................................AAACAGAAGCAAGCCGAAAAAGATGC...............................................................................................	26	20	0.05	1	0	0	0	1	0
...........................................................AACAGAAGCAAGCCGAAAAA....................................................................................................	20	20	0.05	1	0	0	1	0	0
...................................................................................................................GAAGTTGTTGCCGAAAAGAT............................................	20	20	0.05	1	0	0	0	0	1
.........................................................GAAACAGAAGCAAGCCGAAAAAGAT.................................................................................................	25	20	0.05	1	0	0	0	1	0
..............................................................................................................................CGAAAAGATAACTGAAGAAAAAGTGG...........................	26	20	0.05	1	0	0	0	1	0
...........................................................................AAAAGATGCCGAGAAGAAG.....................................................................................	19	20	0.05	1	0	0	0	1	0
........................................................................CGAAAAAGATGCCGAGAAGAAG.....................................................................................	22	20	0.05	1	0	0	1	0	0
........................................................AGAAACAGAAGCAAGCCGAAAAAGAT.................................................................................................	26	20	0.05	1	0	1	0	0	0
....................................................................................................................................GATAACTGAAGAAAAAGT.............................	18	20	0.05	1	0	0	0	1	0
...........................................................................................................................TGCCGAAAAGATAACTGAAGAAAAAG..............................	26	20	0.05	1	0	0	0	1	0
.............................................................CAGAAGCAAGCCGAAAAAGA..................................................................................................	20	20	0.05	1	0	0	0	0	1
......................AAGAAATCCCTGGAACAAAAGGAACT...................................................................................................................................	26	20	0.05	1	1	0	0	0	0
...........................................................................................................................TGCCGAAAAGATAACTGAAGAAAAAGT.............................	27	20	0.05	1	0	0	1	0	0
......................................................GAAGAAACAGAAGCAAGC...........................................................................................................	18	20	0.05	1	0	0	0	1	0
.........................................................................................................................GTTGCCGAAAAGATAACTGAAGAAAA................................	26	20	0.05	1	0	0	0	1	0
............................................................................................................................GCCGAAAAGATAACTGAAGAAAAAGT.............................	26	20	0.05	1	0	0	0	0	1
.....................................................................................................................AGTTGTTGCCGAAAAGAT............................................	18	20	0.05	1	0	0	0	0	1
...............................................................................................................................GAAAAGATAACTGAAGAAAAAGT.............................	23	20	0.05	1	0	0	1	0	0
......................................................GAAGAAACAGAAGCAAGCCGAAA......................................................................................................	23	20	0.05	1	0	0	1	0	0
...........................................................................................................................TGCCGAAAAGATAACTGAAGAAAAA...............................	25	20	0.05	1	0	0	0	1	0
..................................................................GCAAGCCGAAAAAGATGCCGAGAAGA.......................................................................................	26	20	0.05	1	0	1	0	0	0
...................................................................................................................................AGATAACTGAAGAAAAAGTGGAAG........................	24	20	0.05	1	1	0	0	0	0
.........................................................GAAACAGAAGCAAGCCGA........................................................................................................	18	20	0.05	1	0	0	0	1	0
..........................AATCCCTGGAACAAAAGGAACT...................................................................................................................................	22	20	0.05	1	1	0	0	0	0
.............................................................CAGAAGCAAGCCGAAAAAGATG................................................................................................	22	20	0.05	1	0	0	0	1	0
...........................................................AACAGAAGCAAGCCGAAAAAGATGC...............................................................................................	25	20	0.05	1	0	1	0	0	0

droVir3

CCAAAAGGCGAAGGTATTAGAACAACAATTAATTGAAGAGAAGAAACTGAATACCAAACAGAAGAAACAAGCCGAGAAAGATTCTGAAAAGAAACCCCAGAAGGGAGAAGTATCTGAAGTCGTTGCAGAGAAGGTTTCCGAAGAAAACGTTCCTGAGAGTAAGAAGCTTG-AAGTAAAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................AGAAACCCCAGAAGGGAGAAGT....................................................................	22	3	0.67	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................CAGAGAAGGTTTCCGAAGAAAACGTTC...........................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................AACGTTCCTGAGAGTAAGAAGCT...........	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................AAAACGTTCCTGAGAGTAAGAAG.............	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AAGAGAAGAAACTGAATACC............................................................................................................................	20	11	0.18	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTCCGAAGAAAACGTTCC..........................	18	7	0.14	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTCCGAAGAAAACGTTCCT.........................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTCCGAAGAAAACGTTCCTGAGAGT...................	25	7	0.14	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AAGAAAACGTTCCTGAGA.....................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................AAACGTTCCTGAGAGTAAGA...............	20	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GCGAAGGTATTAGAACAACA........................................................................................................................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
......................................................................................................GGGAGAAGTATCTGAAGTCGTTGCAG...................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................GGAGAAGTATCTGAAGTCGTTGC.....................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AAGTATCTGAAGTCGTTGC.....................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GGCGAAGGTATTAGAACAACA........................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................GAAGAGAAGAAACTGAATACCAAAC........................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................GAGAAGAAACTGAATACC............................................................................................................................	18	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ATTAATTGAAGAGAAGAAACTGAATACC............................................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................GAGAAGAAACTGAATACCAAACA.......................................................................................................................	23	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AATTGAAGAGAAGAAACTGAATACC............................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................TGAAGAGAAGAAACTGAATACCAAAC........................................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTAGAACAACAATTAATTGAAGAGAAGA.......................................................................................................................................	28	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....AAGGCGAAGGTATTAGAACA...........................................................................................................................................................	20	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................AACTGAATACCAAACAGAA....................................................................................................................	19	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AAGAAACTGAATACCAAACAGA.....................................................................................................................	22	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................GAAACTGAATACCAAACAGAA....................................................................................................................	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................GAAACTGAATACCAAACAG......................................................................................................................	19	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................AACTGAATACCAAACAGAAGA..................................................................................................................	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GGCGAAGGTATTAGAACA...........................................................................................................................................................	18	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AAGAAACTGAATACCAAACA.......................................................................................................................	20	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AAAGGCGAAGGTATTAGAAC............................................................................................................................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................ACCAAACAGAAGAAACAAGCCGAG.......................................................................................................	24	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TCGTTGCAGAGAAGGTTTCCGAAG....................................	24	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
......................................................................................................................GTCGTTGCAGAGAAGGTTTCCGAAGAAA.................................	28	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................GTTGCAGAGAAGGTTTCCGAAG....................................	22	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CGTTGCAGAGAAGGTTTCCGAA.....................................	22	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...................................................................................................................GAAGTCGTTGCAGAGAAGGTTTCCG.......................................	25	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TACCAAACAGAAGAAACAAGCC..........................................................................................................	22	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTGCAGAGAAGGTTTCCGAAGA...................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
............................TTAATTGAAGAGAAGAAAC....................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GAAGTCGTTGCAGAGAAGGT............................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................AGAAGGGAGAAGTATCTGAA.............................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TGAAGTCGTTGCAGAGAAGGT............................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................GGAGAAGTATCTGAAGTCGTTGCAG...................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TATCTGAAGTCGTTGCAG...................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTGCAGAGAAGGTTTCCGAAG....................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AATTGAAGAGAAGAAACT...................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GAGAAGGTTTCCGAAGAAA.................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...........................ATTAATTGAAGAGAAGAAACT...................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GAGAAGGTTTCCGAAGAAAA................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
........................................................AACAGAAGAAACAAGCCGAG.......................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ACAATTAATTGAAGAGAAGA.......................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................AACAACAATTAATTGAAGAGAA.........................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ATTAATTGAAGAGAAGAAACTG..................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GTATCTGAAGTCGTTGCAGAGAAGGT............................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................GGGAGAAGTATCTGAAGTCGTTGCA....................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CGTTGCAGAGAAGGTTTCC........................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................AACAGAAGAAACAAGCCG.........................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................................................................CTGAAGTCGTTGCAGAGAAGGT............................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................AACAATTAATTGAAGAGAAGA.......................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...................GAACAACAATTAATTGAAGAGAA.........................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AGAAGTATCTGAAGTCGTTGCAGA..................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GAAGGGAGAAGTATCTGAA.............................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GGGAGAAGTATCTGAAGTCGTTGC.....................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AACAATTAATTGAAGAGAAGAAACT...................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................AGAAGGTTTCCGAAGAAAA................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCAAAAGGCAAAGGTACTCGAAAAAGAATCAGCCGAAGAGCAAAAACTGGATGCAAAAAAGAAAGATCAGAGTCAAAAAGAAGCTGAAGCGAAAGCCCAAAAGGGAGAAGTATCTGAAGTCATGACTGAGAAAGTATCGGAAGAGAAAATCCCCGAGACTAAGAGACCTG-AAGTTAAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................AAGAAGCTGAAGCGAAAG....................................................................................	18	2	0.50	1	0	0	0	1	0	0
.................................................................................AGCTGAAGCGAAAGCCCAAAAGGGAG........................................................................	26	16	0.06	1	0	0	0	1	0	0
...................GAAAAAGAATCAGCCGAAGA............................................................................................................................................	20	19	0.05	1	1	0	0	0	0	0
...........................ATCAGCCGAAGAGCAAAAACT...................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.........................GAATCAGCCGAAGAGCAAAAACTGGA................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
....................................AGAGCAAAAACTGGATGC.............................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
........................AGAATCAGCCGAAGAGCA.........................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0
........................AGAATCAGCCGAAGAGCAAAAAC....................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.......................................................................................................GGAGAAGTATCTGAAGTCA.........................................................	19	20	0.05	1	0	0	0	0	0	1
..............................AGCCGAAGAGCAAAAACTG..................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droGri2

TCAAAAGGCAAAGATTCTGGAGCAACAGTCTATTGAAGAGCAGAAGTTGGACACAAAGCAAAAGAAAAAGTCTGAAAAGGATGCTGAAAAGAAGGCCCAGAAGGGTGAAGTATCTGAAGTTGTTGCTGAGAAAGTATCTGAAGAAAAGACTCCAGAAAGTAAGAAGCCGG-ATGTCAAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_1954

scaffold_13266:11865885-11865962 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-5.6	-5.4	-5.3