ID:

dan_1901

 Coordinate:

scaffold_13266:9210274-9210424 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.0 -38.8 -38.7

Flybase annnotation

CDS [Dana\GF13157-cds]; exon [dana_GLEANR_13172:1]; intron [Dana\GF13157-in]

No Repeatable elements found

mature
  1. scaffold_8728:4175-4198 +
  2. scaffold_8736:1997-2020 -
  3. scaffold_9543:17587-17610 +
  4. scaffold_10473:948-971 -
  5. dan_1901  scaffold_13266:9210368-9210391 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGCCGAGGTTGAAGCCGTGCAGATTATTGCCGAGTCACTGAAGCAACAGGTAAGGTTCAACCATTTTGTCCAAAAATTCTACATTGCACTTTTCTGCATTTGTGGATTATTTGCATTTTTTGAGACATGGCATTCCTCTCGACTCCATGGGGGACGATTGTGAGGGCCATGGAGGTGATGAGAACAATGGTAGCTTATCTTATAAAGTGGAAGGCACCTGTTTGTTGTGCAAAGTTCAAAACACTTGGTT
**************************************************...(((((..((((((((.((((((...((((((.((((......))))..))))))...))))((((((......((((((...(((((((.((((...)))).)))....))))))))))))))))..)).)).)))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M058
embryo
 M044
female body
 V039
embryo
 V055
head
................................................................................................................................................TCCATGGGGGACGATTGTGAGGGC................................................................................... 24 0 5 1.80 9 9 0 0 0 0
......................................................................................................................................................................GCCATGGAGGTGATGAGAACA................................................................ 21 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................AAGTGGAAGGCACCTGTTTGTTGTGC.................... 26 0 2 0.50 1 0 0 1 0 0
...........................................................................................................................................TCGACTCCATGGGGGACGATTGTGAGGG.................................................................................... 28 0 4 0.50 2 2 0 0 0 0
.............................GCCGAGTCACTGAAGCAACAGGGC...................................................................................................................................................................................................... 24 2 2 0.50 1 0 1 0 0 0
...........................................................................................................................................TCGACTCCATGGGGGACGATTGTGA....................................................................................... 25 0 4 0.50 2 2 0 0 0 0
.........................TATTGCCGAGTCACTGAAGCAACAGGGT...................................................................................................................................................................................................... 28 2 2 0.50 1 1 0 0 0 0
................................................................................................................................................TCCATGGGGGACGATTGTGAGGG.................................................................................... 23 0 5 0.40 2 2 0 0 0 0
......AGGTTGAAGCCGTGCAGATTATTGCC........................................................................................................................................................................................................................... 26 0 5 0.40 2 0 1 1 0 0
.............................................................................................................................................GACTCCATGGGGGACGATTGTGAGGGC................................................................................... 27 0 5 0.40 2 2 0 0 0 0
.....................................ATTGCAGCAAGAGGTAAGGTT................................................................................................................................................................................................. 21 3 5 0.40 2 1 1 0 0 0
...............................CGATTCACTGAAGCAACAGGGT...................................................................................................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0
.....................................ATTGCAGCAAGAGGTAAGGT.................................................................................................................................................................................................. 20 3 12 0.25 3 0 0 0 2 1
.GGCCGAGGTTGAAGCCGTGCA..................................................................................................................................................................................................................................... 21 0 4 0.25 1 0 0 1 0 0
...........................................................................................................................................TCGACTCCATGGGGGACGATTGTGAGG..................................................................................... 27 0 4 0.25 1 1 0 0 0 0
...........................................................................................................................................TCGACTCCATGGGGGACGATCGTGAGG..................................................................................... 27 1 4 0.25 1 1 0 0 0 0
.GGCCGAGGTTGAAGCCGTGCAGA................................................................................................................................................................................................................................... 23 0 4 0.25 1 1 0 0 0 0
................................................................................................................................................TCCATGGGGGACGATTGTGAGG..................................................................................... 22 0 5 0.20 1 1 0 0 0 0
.............................................................................................................................................GACTCCATGGGGGACGATTGTGAGGG.................................................................................... 26 0 5 0.20 1 1 0 0 0 0
........................................................................................................................................................................................................................ACTTGTTTGTGGTGCAAAGAT.............. 21 3 6 0.17 1 0 0 0 1 0
......................GATTATTGCCGAGTCACTGAAGC.............................................................................................................................................................................................................. 23 0 6 0.17 1 0 1 0 0 0
.....................................................................................................................................................GGGTGACGATTGTCAGGGC................................................................................... 19 2 6 0.17 1 0 1 0 0 0
..........................ATTGCCGAGTCACTGAAGC.............................................................................................................................................................................................................. 19 0 6 0.17 1 0 0 1 0 0
.....................AGATTATTGCCGAGTCACTGAAGC.............................................................................................................................................................................................................. 24 0 6 0.17 1 0 0 0 1 0
..........................ATTGCGGAGTCGCTGAAGCA............................................................................................................................................................................................................. 20 2 7 0.14 1 0 1 0 0 0
......................GATAATTGCCGAGTCGTTGAAG............................................................................................................................................................................................................... 22 3 8 0.13 1 0 1 0 0 0
..................................................................................................................................................AACGGGGGACGATAGTGA....................................................................................... 18 3 20 0.05 1 0 0 0 0 1
..........................................TGCAACAGGTAACGTTGAA.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0
.............................................AACAGTAAAGGGTCAACCA........................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

ACCGGCTCCAACTTCGGCACGTCTAATAACGGCTCAGTGACTTCGTTGTCCATTCCAAGTTGGTAAAACAGGTTTTTAAGATGTAACGTGAAAAGACGTAAACACCTAATAAACGTAAAAAACTCTGTACCGTAAGGAGAGCTGAGGTACCCCCTGCTAACACTCCCGGTACCTCCACTACTCTTGTTACCATCGAATAGAATATTTCACCTTCCGTGGACAAACAACACGTTTCAAGTTTTGTGAACCAA
**************************************************...(((((..((((((((.((((((...((((((.((((......))))..))))))...))))((((((......((((((...(((((((.((((...)))).)))....))))))))))))))))..)).)).)))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V039
embryo
 M058
embryo
 V055
head
 V106
head
..........................................TTGTTGCCCATTCCGAGTTG............................................................................................................................................................................................. 20 3 3 0.33 1 1 0 0 0
.........................................TTGGTTGTCCACTCCGAGTTG............................................................................................................................................................................................. 21 3 4 0.25 1 1 0 0 0
.................................................CCATTACAACTTGGTAACACAG.................................................................................................................................................................................... 22 3 4 0.25 1 0 1 0 0
.............................................TTGTCCATTCCGAGGTGG............................................................................................................................................................................................ 18 2 6 0.17 1 0 0 1 0
.................................................CCATTACAACTTGGTAACACA..................................................................................................................................................................................... 21 3 7 0.14 1 0 1 0 0
.....................................................................................................ACAGCTCATAACCGTAAAAAACT............................................................................................................................... 23 3 7 0.14 1 0 1 0 0
...AGCTCCAAATTCGGCACGC..................................................................................................................................................................................................................................... 19 3 9 0.11 1 1 0 0 0
..........................................................................................................................................................TGCTAACACACCCGGTTCGT............................................................................. 20 3 10 0.10 1 1 0 0 0
.............................................................................................................................................................................................CCATCGATTAGGATTTTTCA.......................................... 20 3 11 0.09 1 0 1 0 0
.....................................................TCCAAGTTGGTAAGTAAGGT.................................................................................................................................................................................. 20 3 12 0.08 1 0 1 0 0
.......................................................................................................AGCTCATAACCGTAAAAAACT............................................................................................................................... 21 3 13 0.08 1 0 1 0 0
....................GACTAAAAACGGCTCAGTGC................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 1
..........................................TCGTTGTCCATTCCCAGG............................................................................................................................................................................................... 18 2 17 0.06 1 1 0 0 0
.................................................................................................................................................................AGTCCCGGTACCTCCGTTAC...................................................................... 20 3 18 0.06 1 0 1 0 0
.........................................................AGTTGGTAATACAGGTCTG............................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:9210224-9210474 + dan_1901 TGGCCGAGGTTGAAGCCGTGCAGATTATTGCCGAGTCACTGAAGCAACAGGTAAG---G--TT-------------------------------CAAC----CATTT----TG----------------------------TCCAAAAA--------TTCTA-------------C------------------ATTGCACTTTT--CTGCATTTGTGGA-------TTATTTGCATT------TTTTGAG----------------------ACATGGC-----------------------ATTCCTCTCGACTCC-ATGGGGGACGATTGT---------------------------------------------------------------------------------GA-GGGC----------------------------------CATGGAGGTGA------TGAGAACAATGG-------TAGCTTATCTTATAAAGTGGAAGGCACCTGTTT--------GTTGTGCAAAGTTCAAA-A-CACTTGGTT------------------
droBip1 scf7180000396427:355809-356061 + TGGCCGAGGTTGAAGCCGTGCAGATTATTGCCGAGTCGCTGAAGCAACAGGTAAG---TTG---------------------------------CAAC----CATTT----TG----------------------------TCCAAAAAA-------TTCAT-------------C------------------ATTGCACTTTT--CTGCATATGCGGA-------TTATATGCATT------T-TTGAG----------------------ACTTGGC-----------------------ATTCCTCTCAGCTCCAATGGGGGCCGATAGT---------------GGGGGCTA----------------------------------------------------------------------------------------------------CTAGATGTGA------TGGGAACAATGG-------TAGCTTATCTTATAAAGTGGAAGGCACCTGTTT--------GTTGTGCAAAGTTCAAA-A-CACTTGGTT------------------
droKik1 scf7180000302228:96546-96812 + TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAGCCGAGGATCAC-C------GTC-C------------GTCC-----AACAAAA----TG----------------------------TCCCC-----------CCCAA-------------A------------------ACTGCAGTTTA--CTGCACTCCCCAA-------TTATCT-----------T-TTGCTGGC-------------------------------GATCTTCGGGCACGC---ATACCTCC---CTCCAACCAGTG-------------------------------CC--------GAA----AAT-------------------------------------------GCC---------------------ATG----GAATCTTCGGACCTGG------CAAGAACAATGGATCCGGCCCCCTTATCTG-----------GGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGT-------------------
droFic1 scf7180000454039:1418764-1419011 - TGGCCGAAGTTGAAGCCGTCCAGATCATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCGT-T-----TGGT----------------CT-----GGCCGTC----TG----------------------------TCAGACAT--------TTTTC-------------G------------------CATGCAATCTT--CTGCACA------------------------TGCAATC-----T-GC-G-AAAAGTGTCGGAAA--A------------T-------------ATA---TCTTTC----------------------C---------------------------------------------AC---TC----------------------------GGGGAGTT---------------------GTG----GAATCTGTGAAGGTGG------CGAGAACAATGGAG-TGG-TCTCTTATCTAG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTA------------------
droEle1 scf7180000491215:509242-509511 + TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGT-GCTCCGTCCCTCAGTCT-----GTCCATC----TG----------------------------TCCGACAT--------TTTGG-------------C------------------AATGCAGTTATATATGTACATAC--ATACATACATATATGCACTTGCAG---------------GGGGTAATG--AA--G------TG----T-------------ATA---TCTTG--GCT---AT------------------------------------------------------------------------A---------------------GG-GAATT---------------------GTG----GAATCTGCGGAGCTGG------CGAGAACAATGGAG-TGT-GGTCTTATCTGG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA----------------------------
droRho1 scf7180000779957:356374-356621 + TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGT-C------------GTCC-----GTCCGTCTGTCTG----------------------------TCCGACAT--------TTTGG-------------C------------------AATGCAGTTATATATGCACA------------------------TGCAC-------T-GC-C-GAAATTGTC--------------------T-------------ATG---TCTTA--------------------------------------------------------------------CATTT---------C---------------------GG-GGGCC---------------------GTG----GAATCTGCATAGCTGG------CGAGAACAATGGAG-TGG-TCTCTTATCTCG---------ATACACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTA------------------
droBia1 scf7180000302291:3191320-3191569 + TGGCCGAGGTTGAAGCCGTGCAGATCATTGCCGAGTCGTTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGC-C------------GACG-----GTCCGTT----TG----------------------------TCCGACAT--------TTTCG-------------C------------------AATGCACTT-T--CTGCACT------------------------CGCGC-------TGGCGGCGAAAATGTCGGAAA--A------TG-----------------TATA---TCGT--------------------------------------------------------------------------GTCGA----T----------------------G-GGGCC---------------------GTG----GAATCTGCGGAGCTGG------CGAGAACAATGGAG-TGG-TCCCTTATCTCG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTA------------------
droTak1 scf7180000412369:48082-48333 - TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGC-C------------GTCC-----GTCCTTT----TG----------------------------TCCGACAT--------TTTGG-------------C------------------AATGCACTTTT--CTGCATT------------------------CGC------------------A-----------AAA------------AGTACCATG----T----------------------------------AAATTGTAGATATTACGCAGCGACT---------------------------G----------------------------GG-GGACC---------------------GTG----GAATCTGCGGAGCTGG------CGAGAACAATGGAG-TGG-TCTCTTATCTAG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTG------------------
droEug1 scf7180000409474:1845382-1845632 + TGGCCGAGGTTGAAGCCGTTCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGC-T------------GTCG-----GTCTATT----TG----------------------------TCCGACAT--------CTTTG-------------T------------------ACTGCACTTTT--CTGCATT------------------------TGCCCCT-----T-GC-GCGAGCATCTCG----AAA------------T-------------ATA---TCTTAC----------------------A---------A---------------------------------------ATTGA----C----------------------G-GGGCC---------------------GTG----GAATCTGCGGAGCTGG------CGAGAACAATGGAG-TGG-TCTCTTATCTTG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTA------------------
dm3 chr2R:16132506-16132753 - TGGCCGAAGTTGAAGCCGTGCAGATAATTGCAGAATCTTTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGT-C------------GTCC-----AGCCATT----TG----------------------------TCCGACAT--------TTTGG-------------C------------------ACTGCACTTTT--CTGCACT------------------------TG------------------------------------------------------------------------------G-----------------------GATATTGCCCAACTACT--------ATA----TATCTCATTTGTGAA----C---------------------GG-GGGCC---------------------GCG----GAATCTGTGGCGCTGG------CAAGAACAATGGAG-TGG-TCTCTTATCTTG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTA------------------
droSim2 2r:16712693-16712940 - dsi_24887 TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGT-C------------GTCC-----AGCCATT----TG----------------------------TCCGACAT--------TTTGG-------------C------------------ACTGCACTTTT--CTGCACT------------------------TG------------------------------------------------------------------------------G-----------------------GATATTGCCCAACTACT--------ATA----TATGCCATTTGTCAA----C---------------------GG-AGGTC---------------------GCG----GAATCTGTGGCGCTGA------CAAGAACAATGGAG-TGG-TCTCTTATCTTG---------AGGCACCTGTTT--------GTTGTACAAAGTTCAAAAA-CACTTGGTT------------------
droSec2 scaffold_1:13698720-13698964 - TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGT-C------------GTCC-----AGCCATT----TG----------------------------TCCGACAT--------TTTGG-------------C------------------AGTGCACTTTT--CTGCACT------------------------TG------------------------------------------------------------------------------G-----------------------GATATTGCCCAACTACT--------ATA----TATGCCATTTGTGAA----C-------------------------GGTC---------------------GCG----GAATCTGTGGCGCTGG------CAAGAACAATGGAG-TGG-TCTCTTATCTTG---------AGGTACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTT------------------
droYak3 2R:13070830-13071106 + TGGCCGAGGTTGAAGCCGTACAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGTTC------------GTCC-----AGCCATT----TT----------------------------TCCGACAT--------TTTGG-------------C------------------ACTGCACTTTT--CTGCATT------------------------TG------------------------------------------------------------------------------G-----------------------GATAATGCCCAGCTACCACCATTGTATA----CATGCCATTTATCAA----C----GC---------------GG-GGGCC---------------------GCG----GAATCTGTGGCGCTGG------CAAGAACAATGGAG-TGG-TCTCTTATCTTG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTAACTGTAAGTGTGTTTGTT
droEre2 scaffold_4845:10282813-10283085 - TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCGTTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGTCC------------ACCC-----AGCCATT----TG----------------------------TCCGACAT--------TTTGG-------------C------------------ACTGCACTTTT--CTGCACT------------------------TT------------------------------------------------------------------------------G-----------------------GATAATGCCCAGCTACC---AATGTATACATATATGGCATTTATCAA----C---------------------GG-GGGCC---------------------GCG----GAATCTGTGGCGCTGG------CAAGAACAATGGAG-TAG-TCTCTTATCTTG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTAACTGTAAGTGTG---GTT
dp5 3:17725379-17725643 + TGGCCGATGTTGAAGCAGTGCAAATTATTGCGGAGTCGCTGAAGCAACAGGTAAG---AGGCCGAG-A-----CTGC--CC--------------------------------------------------------------------------------------------CCGCACGCAAGTCTGGGATGGGATCCA-TTTT--CTGCAGC---------------------------------------------A-----------AA-------TGTGCAATCTCCATGCGGTC----------------------------------ATATCTAAGATATTA---------------------------------------ACCTATGGACGC------TGA--TTAA----AA--TAACTGTGGGTC---------GTC----GGTCCAGTGGAAGTGGCAGCAGCAAGAACAACGGAG-------TCTTATCTA------------GCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTAAGTA------------------
droPer2 scaffold_31:68154-68418 - TGGCCGATGTTGAAGCAGTGCAAATTATTGCGGAGTCGCTGAAGCAACAGGTAAG---AGGCCGAG-A-----CTGC--CC--------------------------------------------------------------------------------------------CCGCACGCAAGTCTGGGATGGGATGCA-TTTT--CTGCAGC---------------------------------------------A-----------AA-------TGTGCAATCTCCATGCGGTC----------------------------------ATATCTAAGATATTA---------------------------------------ACCTATGGACGC------TGA--TTAA----AA--TAACTGTGGGTC---------GTC----GGTCCAGTGGAAGTGGCAGCAGCAAGAACAACGGAG-------TCTTATCTA------------GCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTAAGTA------------------
droWil2 scf2_1100000004514:2648041-2648268 - TGTCCGAAGTTGAAGCAGTGCAGATTATTGCGGAGTCATTGAAGCAACAGGTAAA---ATTTTCAA-C-----TTTT--------------------------------------------------TCCTATATCTCTTTTCGGGCTT--------TTTGT----------------------------------------------------------------------------------------TGTTGTTGAAA-----GGAAA--A------TG-----------------C---ATAGTGCA---CTGTG-----------------------GACATA--------ACT--------GTA----GATGCCAA-----AA----C-------------------------AGA-----------TCGAAGGTAACGC--------------GAGGTA--------GAGAGGA----AT-TGG-AGTCTTATCT------------GGCAACTGCT-----------TGTGCAAAGTTCAAA-A-CACTCAA--------------------
droVir3 scaffold_12875:3348095-3348323 + TGGCCGAAGTCGAAGCTGTGCAAATAATTGCGGAATCTTTGAAGCAACAGGTAAG---CTAATCGG-TGGCCATTGT-----------------------------C----TGCCCCACCATCTTTTCCCATTG-------TC-------------------------------------------TCTTATGATATGCACTT-T--TTGCATA------------------------C-----------------------------------------------------------------------------------------------TAGC-----A-----GT-----------------------------------------------------GAGGGGAAA----AGAA--------TGCGAC---------GTACGTTCA-ACTGTAGATTTAA------CGGCACCAG-GGCC-GCA-TTGCTTATCTTT-----------CCAATTTTCT--------GTTGTGCAAAGTTCAAAA-----------------------------
droMoj3 scaffold_6496:21794935-21795173 - TGGCCGAAGTCGAAGCTGTGCAAATAATTGCGGAATCTTTGAAGCAACAGGTAAG---CCAATTGC-A-----------------------------CCACTCTGTC----TGTCACACCATCTTTGTCTTTTG-------TCTCCTA-----------------------------------------TATGATATGCACTT-T--TTGCATA------------------------T-----------------------------------------------------------------------------------------------AAACTCTTCGTTTGAGG-----------------------------------------------------GAGGG--GTAAGA-GAGCA---------------------GTGCGTTCA-ACTGTAGAATTAA------CGGCATCAG-GGCC-AAG-CCGCTTATCTAT---------C-CAATTTTTCT--------GTTGTGCAAAGTTCAAAA-----------------------------
droGri2 scaffold_15112:2797954-2798214 - TGACTGAAGTTGAAGCGGTGCAAATTATAGCGGAATCGTTGAAGCAACAGGTAAG---CTAATCGAGACGCCATTAT-T------------ATCC-----AGCACTA----TG----------------------------AGTCT----TTGCCATTGTGTCGCTCTTTCCTTT------------------GTATGCATTT-C--TTGCATG------------------------T-----------------------------------------------------------------------------------------------AAAC-----A-------------------------------------------------T----GTGTGCAAA----GC----AGAATT-------GTTAA---------GTGCGTTTA-ACTGTGGATTTAA------CGGCAACAA-GGCC-TCG-TTGCTTATCTTT---------CGCAAGCTTTTTTTTTTCATATTGTACAAAGTTCAAAAAGCACTTG---------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TGGCCGAGGTTGAAGCCGTGCAGATTATTGCCGAGTCACTGAAGCAACAGGTAAG---G--TT-------------------------------CAAC----CATTT----TG----------------------------TCCAAAAA--------TTCTA-------------C------------------ATTGCACTTTT--CTGCATTTGTGGA-------TTATTTGCATT------TTTTGAG----------------------ACATGGC-----------------------ATTCCTCTCGACTCC-ATGGGGGACGATTGT---------------------------------------------------------------------------------GA-GGGC----------------------------------CATGGAGGTGA------TGAGAACAATGG-------TAGCTTATCTTATAAAGTGGAAGGCACCTGTTT--------GTTGTGCAAAGTTCAAA-A-CACTTGGTT------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................TCC-ATGGGGGACGATTGT---------------------------------------------------------------------------------GA-GGGC----------------------------------............................................................................................................................2451.809000090
....................................................................................................................................................................................................................................................................................................................................................................................................................................GC----------------------------------CATGGAGGTGA------TGAGAACA...................................................................................................2111.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGAAGGCACCTGTTT--------GTTGTGC........................................2620.501100000
......................................................................................................................................................................................................................................................................................................................TCGACTCC-ATGGGGGACGATTGT---------------------------------------------------------------------------------GA-GGG...............................................................................................................................................................2840.502000020
.............................GCCGAGTCACTGAAGCAACAGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501010000
......................................................................................................................................................................................................................................................................................................................TCGACTCC-ATGGGGGACGATTGT---------------------------------------------------------------------------------GA-..................................................................................................................................................................2540.502000020
.........................TATTGCCGAGTCACTGAAGCAACAGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.501000010
...........................................................................................................................................................................................................................................................................................................................TCC-ATGGGGGACGATTGT---------------------------------------------------------------------------------GA-GGG...............................................................................................................................................................2350.402000020
......AGGTTGAAGCCGTGCAGATTATTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.402110000
........................................................................................................................................................................................................................................................................................................................GACTCC-ATGGGGGACGATTGT---------------------------------------------------------------------------------GA-GGGC----------------------------------............................................................................................................................2750.402000020
.GGCCGAGGTTGAAGCCGTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.251100000
......................................................................................................................................................................................................................................................................................................................TCGACTCC-ATGGGGGACGATTGT---------------------------------------------------------------------------------GA-GG................................................................................................................................................................2740.251000010
.GGCCGAGGTTGAAGCCGTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.251000010
...........................................................................................................................................................................................................................................................................................................................TCC-ATGGGGGACGATTGT---------------------------------------------------------------------------------GA-GG................................................................................................................................................................2250.201000010
........................................................................................................................................................................................................................................................................................................................GACTCC-ATGGGGGACGATTGT---------------------------------------------------------------------------------GA-GGG...............................................................................................................................................................2650.201000010
......................GATTATTGCCGAGTCACTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.171010000
..........................ATTGCCGAGTCACTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.171100000
.....................AGATTATTGCCGAGTCACTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.171001000
droBip1
TGGCCGAGGTTGAAGCCGTGCAGATTATTGCCGAGTCGCTGAAGCAACAGGTAAG---TTG---------------------------------CAAC----CATTT----TG----------------------------TCCAAAAAA-------TTCAT-------------C------------------ATTGCACTTTT--CTGCATATGCGGA-------TTATATGCATT------T-TTGAG----------------------ACTTGGC-----------------------ATTCCTCTCAGCTCCAATGGGGGCCGATAGT---------------GGGGGCTA----------------------------------------------------------------------------------------------------CTAGATGTGA------TGGGAACAATGG-------TAGCTTATCTTATAAAGTGGAAGGCACCTGTTT--------GTTGTGCAAAGTTCAAA-A-CACTTGGTT------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAGCCGAGGATCAC-C------GTC-C------------GTCC-----AACAAAA----TG----------------------------TCCCC-----------CCCAA-------------A------------------ACTGCAGTTTA--CTGCACTCCCCAA-------TTATCT-----------T-TTGCTGGC-------------------------------GATCTTCGGGCACGC---ATACCTCC---CTCCAACCAGTG-------------------------------CC--------GAA----AAT-------------------------------------------GCC---------------------ATG----GAATCTTCGGACCTGG------CAAGAACAATGGATCCGGCCCCCTTATCTG-----------GGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGT-------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TGGCCGAAGTTGAAGCCGTCCAGATCATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCGT-T-----TGGT----------------CT-----GGCCGTC----TG----------------------------TCAGACAT--------TTTTC-------------G------------------CATGCAATCTT--CTGCACA------------------------TGCAATC-----T-GC-G-AAAAGTGTCGGAAA--A------------T-------------ATA---TCTTTC----------------------C---------------------------------------------AC---TC----------------------------GGGGAGTT---------------------GTG----GAATCTGTGAAGGTGG------CGAGAACAATGGAG-TGG-TCTCTTATCTAG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTA------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGT-GCTCCGTCCCTCAGTCT-----GTCCATC----TG----------------------------TCCGACAT--------TTTGG-------------C------------------AATGCAGTTATATATGTACATAC--ATACATACATATATGCACTTGCAG---------------GGGGTAATG--AA--G------TG----T-------------ATA---TCTTG--GCT---AT------------------------------------------------------------------------A---------------------GG-GAATT---------------------GTG----GAATCTGCGGAGCTGG------CGAGAACAATGGAG-TGT-GGTCTTATCTGG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA----------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGT-C------------GTCC-----GTCCGTCTGTCTG----------------------------TCCGACAT--------TTTGG-------------C------------------AATGCAGTTATATATGCACA------------------------TGCAC-------T-GC-C-GAAATTGTC--------------------T-------------ATG---TCTTA--------------------------------------------------------------------CATTT---------C---------------------GG-GGGCC---------------------GTG----GAATCTGCATAGCTGG------CGAGAACAATGGAG-TGG-TCTCTTATCTCG---------ATACACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTA------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGGCCGAGGTTGAAGCCGTGCAGATCATTGCCGAGTCGTTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGC-C------------GACG-----GTCCGTT----TG----------------------------TCCGACAT--------TTTCG-------------C------------------AATGCACTT-T--CTGCACT------------------------CGCGC-------TGGCGGCGAAAATGTCGGAAA--A------TG-----------------TATA---TCGT--------------------------------------------------------------------------GTCGA----T----------------------G-GGGCC---------------------GTG----GAATCTGCGGAGCTGG------CGAGAACAATGGAG-TGG-TCCCTTATCTCG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTA------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGC-C------------GTCC-----GTCCTTT----TG----------------------------TCCGACAT--------TTTGG-------------C------------------AATGCACTTTT--CTGCATT------------------------CGC------------------A-----------AAA------------AGTACCATG----T----------------------------------AAATTGTAGATATTACGCAGCGACT---------------------------G----------------------------GG-GGACC---------------------GTG----GAATCTGCGGAGCTGG------CGAGAACAATGGAG-TGG-TCTCTTATCTAG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTG------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TGGCCGAGGTTGAAGCCGTTCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGC-T------------GTCG-----GTCTATT----TG----------------------------TCCGACAT--------CTTTG-------------T------------------ACTGCACTTTT--CTGCATT------------------------TGCCCCT-----T-GC-GCGAGCATCTCG----AAA------------T-------------ATA---TCTTAC----------------------A---------A---------------------------------------ATTGA----C----------------------G-GGGCC---------------------GTG----GAATCTGCGGAGCTGG------CGAGAACAATGGAG-TGG-TCTCTTATCTTG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTA------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGGCCGAAGTTGAAGCCGTGCAGATAATTGCAGAATCTTTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGT-C------------GTCC-----AGCCATT----TG----------------------------TCCGACAT--------TTTGG-------------C------------------ACTGCACTTTT--CTGCACT------------------------TG------------------------------------------------------------------------------G-----------------------GATATTGCCCAACTACT--------ATA----TATCTCATTTGTGAA----C---------------------GG-GGGCC---------------------GCG----GAATCTGTGGCGCTGG------CAAGAACAATGGAG-TGG-TCTCTTATCTTG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTA------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........TTGAAGCCGTGCAGATAATTGCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................C------------------ACTGCACTTTT--CTGCACT------------------------TG------------------------------------------------------------------------------G-----------------------GA............................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GTTGAAGCCGTGCAGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGTTT--------GTTGTGCAAAGTT..................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AGCAACAGGTAAG---AGGATCAC-C-----...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................G---AGGATCAC-C-----TGGT-C------------GTCC-----AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG------CAAGAACAATGGAG-T...........................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.......................................TGAAGCAACAGGTAAG---AG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCACCTGTTT--------GTTGTGCAA......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AG---AGGATCAC-C-----TGGT-C------------GT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGGAG-TGG-TCTCTTATCTT.............................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TTTGAAGCAACAGGTAAG---AGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGG------CAAGAACAATGGAG-TG..........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGAAGCCGTGCAGATAATTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TG----------------------------TCCGACAT--------TTTGG-------------C------------------ACTGC.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................C---------------------GG-GGGCC---------------------GCG----GAATCTG..........................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........GAAGCCGTGCAGATAATTGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CTTTGAAGCAACAGGTAAG---AG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...........GAAGCCGTGCAGATAATTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTTT--------GTTGTGCAAAG....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
...............CCGTGCAGATAATTGCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTAAG---AGGATCAC-C-----TGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TTTGG-------------C------------------ACTGCACTTTT--C....................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTG---------AGGCACCTGTTT--------G..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................ACAGGTAAG---AGGATCAC-C-----...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGG------CAAGAACAATGGAG-T...........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTGAAGCCGTGCAGATAATTGCAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTGAAGCCGTGCAGATAATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
droSim2
TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGT-C------------GTCC-----AGCCATT----TG----------------------------TCCGACAT--------TTTGG-------------C------------------ACTGCACTTTT--CTGCACT------------------------TG------------------------------------------------------------------------------G-----------------------GATATTGCCCAACTACT--------ATA----TATGCCATTTGTCAA----C---------------------GG-AGGTC---------------------GCG----GAATCTGTGGCGCTGA------CAAGAACAATGGAG-TGG-TCTCTTATCTTG---------AGGCACCTGTTT--------GTTGTACAAAGTTCAAAAA-CACTTGGTT------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGGCGCTGA------CAAG.......................................................................................................1812.00202000000000000000
.........................................AAGCAACAGGTAAG---AGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.............................................................................................................................................TCCGACAT--------TTTGG-------------C------------------ACTG..............................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
....................................................AAG---AGGATCAC-C-----TGGT-C------------GTCC-----AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..................................GTCATTGAAGCAACAGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1931.00301200000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCAA----C---------------------GG-AGGTC---------------------GCG----GAATCTG..........................................................................................................................2311.00110000000000000000
............................TGCCGAGTCATTGAAGCAACAGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAG-TGG-TCTCA...................................................................................1530.33100000000001000000
...................................TCATTGAAGCAACAGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.17101000000000000000
droSec2
TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGT-C------------GTCC-----AGCCATT----TG----------------------------TCCGACAT--------TTTGG-------------C------------------AGTGCACTTTT--CTGCACT------------------------TG------------------------------------------------------------------------------G-----------------------GATATTGCCCAACTACT--------ATA----TATGCCATTTGTGAA----C-------------------------GGTC---------------------GCG----GAATCTGTGGCGCTGG------CAAGAACAATGGAG-TGG-TCTCTTATCTTG---------AGGTACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTT------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................AATTGCCGAGTCATTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030030
........GTTGAAGCCGTGCAGATAATTGCCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020110
.........................AATTGCCGAGTCATTGAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........GTTGAAGCCGTGCAGATAATTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................GAA----C-------------------------GGTC---------------------GCG----GAATCTGTGG.......................................................................................................................2111.0011000
................................GAGTCATTGAAGCAACAGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..................................................GTAAG---AGGATCAC-C-----TGGT-C------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGCGCTGG------CAAGAACAATGGAG-T...........................................................................................2711.0010010
.........................AATTGCCGAGTCATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................................GTCATTGAAGCAACAGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..GCCGAGGTTGAAGCCGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG---------AGGTACCTGTTT--------GTTG...........................................1911.0010010
TGGCCGAGGTTGAAGCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
droYak3
TGGCCGAGGTTGAAGCCGTACAGATAATTGCCGAGTCATTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGTTC------------GTCC-----AGCCATT----TT----------------------------TCCGACAT--------TTTGG-------------C------------------ACTGCACTTTT--CTGCATT------------------------TG------------------------------------------------------------------------------G-----------------------GATAATGCCCAGCTACCACCATTGTATA----CATGCCATTTATCAA----C----GC---------------GG-GGGCC---------------------GCG----GAATCTGTGGCGCTGG------CAAGAACAATGGAG-TGG-TCTCTTATCTTG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTAACTGTAAGTGTGTTTGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................GTACAGATAATTGCCGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201000010000
.........................AATTGCCGAGTCATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..........................ATTGCCGAGTCATTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.................GTACAGATAATTGCCGAGTCATTGAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
droEre2
TGGCCGAGGTTGAAGCCGTGCAGATAATTGCCGAGTCGTTGAAGCAACAGGTAAG---AGGATCAC-C-----TGGTCC------------ACCC-----AGCCATT----TG----------------------------TCCGACAT--------TTTGG-------------C------------------ACTGCACTTTT--CTGCACT------------------------TT------------------------------------------------------------------------------G-----------------------GATAATGCCCAGCTACC---AATGTATACATATATGGCATTTATCAA----C---------------------GG-GGGCC---------------------GCG----GAATCTGTGGCGCTGG------CAAGAACAATGGAG-TAG-TCTCTTATCTTG---------AGGCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTTGGTAACTGTAAGTGTG---GTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................AATTGCCGAGTCGTTGAAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
......................GATAATTGCCGAGTCGTTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
.....................AGATAATTGCCGAGTCGTTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
........................TAATTGCCGAGTCGTTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
.....GAGGTTGAAGCCGTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
dp5
TGGCCGATGTTGAAGCAGTGCAAATTATTGCGGAGTCGCTGAAGCAACAGGTAAG---AGGCCGAG-A-----CTGC--CC--------------------------------------------------------------------------------------------CCGCACGCAAGTCTGGGATGGGATCCA-TTTT--CTGCAGC---------------------------------------------A-----------AA-------TGTGCAATCTCCATGCGGTC----------------------------------ATATCTAAGATATTA---------------------------------------ACCTATGGACGC------TGA--TTAA----AA--TAACTGTGGGTC---------GTC----GGTCCAGTGGAAGTGGCAGCAGCAAGAACAACGGAG-------TCTTATCTA------------GCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTAAGTA------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................TGCAAATTATTGCGGAGTCGCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000400
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTC---------GTC----GGTCCAGTGGAAGTGG.................................................................................................................2612.0020000000020
............................TGCGGAGTCGCTGAAGCAACAGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000100
.GGCCGATGTTGAAGCAGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....CGATGTTGAAGCAGTGCAAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
...................GCAAATTATTGCGGAGTCGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................AATTATTGCGGAGTCGCTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.......................ATTATTGCGGAGTCGCTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................TTATTGCGGAGTCGCTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
TGGCCGATGTTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
...........................TTGCGGAGTCGCTGAAGCAACAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................TGCGGAGTCGCTGAAGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
..........................ATTGCGGAGTCGCTGAAGCAACAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
TGGCCGATGTTGAAGCAGTGCAAATTATTGCGGAGTCGCTGAAGCAACAGGTAAG---AGGCCGAG-A-----CTGC--CC--------------------------------------------------------------------------------------------CCGCACGCAAGTCTGGGATGGGATGCA-TTTT--CTGCAGC---------------------------------------------A-----------AA-------TGTGCAATCTCCATGCGGTC----------------------------------ATATCTAAGATATTA---------------------------------------ACCTATGGACGC------TGA--TTAA----AA--TAACTGTGGGTC---------GTC----GGTCCAGTGGAAGTGGCAGCAGCAAGAACAACGGAG-------TCTTATCTA------------GCACCTGTTT--------GTTGTGCAAAGTTCAAAAA-CACTAAGTA------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................ATCTAAGATATTA---------------------------------------ACCTATGGAC......................................................................................................................................................................................2311.001100000
droWil2
TGTCCGAAGTTGAAGCAGTGCAGATTATTGCGGAGTCATTGAAGCAACAGGTAAA---ATTTTCAA-C-----TTTT--------------------------------------------------TCCTATATCTCTTTTCGGGCTT--------TTTGT----------------------------------------------------------------------------------------TGTTGTTGAAA-----GGAAA--A------TG-----------------C---ATAGTGCA---CTGTG-----------------------GACATA--------ACT--------GTA----GATGCCAA-----AA----C-------------------------AGA-----------TCGAAGGTAACGC--------------GAGGTA--------GAGAGGA----AT-TGG-AGTCTTATCT------------GGCAACTGCT-----------TGTGCAAAGTTCAAA-A-CACTCAA--------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................ATTGCGGAGTCATTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.00400040
...............................................................................................................................................................................................................................................................................................................ATAGTGCA---CTGTG-----------------------GACATA--------ACT--------GT...................................................................................................................................................................................................................2412.00220000
......................GATTATTGCGGAGTCATTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200110
....................CAGATTATTGCGGAGTCATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200110
................AGTGCAGATTATTGCGGAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200020
....CGAAGTTGAAGCAGTGCAGATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
..........TGAAGCAGTGCAGATTATTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.....................AGATTATTGCGGAGTCATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.................GTGCAGATTATTGCGGAGTCATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
........................TTATTGCGGAGTCATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
................AGTGCAGATTATTGCGGAGTCATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...................GCAGATTATTGCGGAGTCATTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.......................ATTATTGCGGAGTCATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..TCCGAAGTTGAAGCAGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
TGTCCGAAGTTGAAGCAGTGCAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
...........GAAGCAGTGCAGATTATTGCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..................................GTCATTGAAGCAACAGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100010
droVir3
TGGCCGAAGTCGAAGCTGTGCAAATAATTGCGGAATCTTTGAAGCAACAGGTAAG---CTAATCGG-TGGCCATTGT-----------------------------C----TGCCCCACCATCTTTTCCCATTG-------TC-------------------------------------------TCTTATGATATGCACTT-T--TTGCATA------------------------C-----------------------------------------------------------------------------------------------TAGC-----A-----GT-----------------------------------------------------GAGGGGAAA----AGAA--------TGCGAC---------GTACGTTCA-ACTGTAGATTTAA------CGGCACCAG-GGCC-GCA-TTGCTTATCTTT-----------CCAATTTTCT--------GTTGTGCAAAGTTCAAAA-----------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................AATTGCGGAATCTTTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.................GTGCAAATAATTGCGGAATCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
...................................................TAAG---CTAATCGG-TGGCCATTGT-----------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.............................................AACAGGTAAG---CTAATCGG-T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000001000000000000000000000000000000000000
TGGCCGAAGTCGAAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000001000000000000000000000000000000000000000000000000000000
..............................................ACAGGTAAG---CTAATCGG-TGGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
....................CAAATAATTGCGGAATCTTTGAAGCAACAGGGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3411.001000000000000000000000000000000000000000001000000000000000000000
......................AATAATTGCGGAATCTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.GGCCGAAGTCGAAGCTGTGCAAATAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000001000000000000000000000000000000
TGGCCGAAGTCGAAGCTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
....................CAAATAATTGCGGAATCTTTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
TGGCCGAAGTCGAAGCTGTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
..........................ATTGCGGAATCTTTGAAGCAACAGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
.......................ATAATTGCGGAATCTTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000001000000000000000000000000000000000000000000000000000
..GCCGAAGTCGAAGCTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000010000000000000000000000000000000000
..............GCTGTGCAAATAATTGCGGAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
........................TAATTGCGGAATCTTTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
.................GTGCAAATAATTGCGGAATCTTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000010000000000000000000000000000000000000000
......AAGTCGAAGCTGTGCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTTCA-ACTGTAGATTTAA------CG.........................................................................................................2411.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
TGGCCGAAGTCGAAGCTGTGCAAATAATTGCGGAATCTTTGAAGCAACAGGTAAG---CCAATTGC-A-----------------------------CCACTCTGTC----TGTCACACCATCTTTGTCTTTTG-------TCTCCTA-----------------------------------------TATGATATGCACTT-T--TTGCATA------------------------T-----------------------------------------------------------------------------------------------AAACTCTTCGTTTGAGG-----------------------------------------------------GAGGG--GTAAGA-GAGCA---------------------GTGCGTTCA-ACTGTAGAATTAA------CGGCATCAG-GGCC-AAG-CCGCTTATCTAT---------C-CAATTTTTCT--------GTTGTGCAAAGTTCAAAA-----------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................AATTGCGGAATCTTTGAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
..........................ATTGCGGAATCTTTGAAGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................CAAATAATTGCGGAATCTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................TGTGCAAATAATTGCGGAATCTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.............AGCTGTGCAAATAATTGCGGAATCTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
....CGAAGTCGAAGCTGTGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
TGACTGAAGTTGAAGCGGTGCAAATTATAGCGGAATCGTTGAAGCAACAGGTAAG---CTAATCGAGACGCCATTAT-T------------ATCC-----AGCACTA----TG----------------------------AGTCT----TTGCCATTGTGTCGCTCTTTCCTTT------------------GTATGCATTT-C--TTGCATG------------------------T-----------------------------------------------------------------------------------------------AAAC-----A-------------------------------------------------T----GTGTGCAAA----GC----AGAATT-------GTTAA---------GTGCGTTTA-ACTGTGGATTTAA------CGGCAACAA-GGCC-TCG-TTGCTTATCTTT---------CGCAAGCTTTTTTTTTTCATATTGTACAAAGTTCAAAAAGCACTTG---------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................AATTATAGCGGAATCGTTGAAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
..................................ATCGTTGAAGCAACAGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.....GAAGTTGAAGCGGTGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
.......AGTTGAAGCGGTGCAAATTATAGCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTTTA-ACTGTGGATTTAA------CGGC.......................................................................................................2611.00110

Generated: 05/18/2015 at 03:18 AM