ID:

dan_18

 Coordinate:

scaffold_13266:4132825-4132882 +

 Confidence:

Known Ortholog

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.2 -36.9 -36.9

Flybase annnotation

pre_miRNA [Dana\mir-311a-RM]

No Repeatable elements found

Sense Strand Reads

CGAAAAGTTTTCAGGAGCTAAAAAGTGTTTAGAACTTCGATTTTATTTGTAGGTCGCGGAAGGTTGCAATGCGTATTTTGAATCGTATTGCACTTTCCCCGGCCCATAGATATTATACGAACAGCAGCGATCGCTATCTGAGAGAAATATTTGTTGCC
***********************************((((((..(((((((.(((((.(((((((.((((((((..........))))))))))))))).))))).)))))))..)).)))).************************************ 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body		 V106
head
 V055
head
.....................................................................................TATTGCACTTTCCCCGGCCCAT................................................... 22 0 1 34173.00 34173 30922 2456 783 1 9 2
.....................................................................................TATTGCACTTTCCCCGGCCCA.................................................... 21 0 1 10436.00 10436 8865 1083 473 1 8 6
.....................................................................................TATTGCACTTTCCCCGGCCC..................................................... 20 0 1 8113.00 8113 7553 385 172 0 3 0
.....................................................................................TATTGCACTTTCCCCGGCCCAC................................................... 22 1 1 6649.00 6649 6633 11 4 1 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGC...................................................................................... 23 0 1 2768.00 2768 1905 240 485 112 20 6
.....................................................................................TATTGCACTTTCCCCGGCCCATA.................................................. 23 0 1 2401.00 2401 2016 301 81 0 2 1
.................................................TAGGTCGCGGAAGGTTGCAATG....................................................................................... 22 0 1 2067.00 2067 1421 183 422 31 5 5
.....................................................................................TATTGCACTTTCCCCGGCC...................................................... 19 0 1 1665.00 1665 1422 169 66 0 1 7
.....................................................................................TATTGCACTTTCCCCGGCCCATT.................................................. 23 1 1 1574.00 1574 1378 147 45 0 3 1
.....................................................................................TGTTGCACTTTCCCCGGCCCAT................................................... 22 1 1 1389.00 1389 1388 1 0 0 0 0
..................................................AGGTCGCGGAAGGTTGCAATGC...................................................................................... 22 0 1 1374.00 1374 362 97 393 415 87 20
.....................................................................................TATTGCACTTTCCCCGGCCCAA................................................... 22 1 1 1369.00 1369 1045 297 26 0 1 0
.....................................................................................TACTGCACTTTCCCCGGCCCAT................................................... 22 1 1 978.00 978 974 2 2 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAAT........................................................................................ 21 0 1 826.00 826 508 24 259 29 4 2
......................................................................................ATTGCACTTTCCCCGGCCCAT................................................... 21 0 1 633.00 633 478 153 2 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCA..................................................... 20 1 1 608.00 608 432 133 43 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCATAA................................................. 24 1 1 499.00 499 428 61 10 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGCAA.................................................................................... 25 2 1 468.00 468 223 37 208 0 0 0
.....................................................................................TGTTGCACTTTCCCCGGCCC..................................................... 20 1 1 395.00 395 394 0 1 0 0 0
....................................................................................CTATTGCACTTTCCCCGGCCCAT................................................... 23 1 1 378.00 378 370 7 1 0 0 0
.....................................................................................TATGGCACTTTCCCCGGCCCAT................................................... 22 1 1 370.00 370 370 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGCA..................................................................................... 24 1 1 358.00 358 219 29 109 1 0 0
..................................................AGGTCGCGGAAGGTTGCAATGCG..................................................................................... 23 0 1 355.00 355 42 156 30 110 9 8
.....................................................................................TGTTGCACTTTCCCCGGCCCA.................................................... 21 1 1 341.00 341 341 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCAAA.................................................. 23 1 1 333.00 333 224 104 5 0 0 0
.....................................................................................TGTTGCACTTTCCCCGGCCCAC................................................... 22 2 1 317.00 317 317 0 0 0 0 0
.....................................................................................TATCGCACTTTCCCCGGCCCAT................................................... 22 1 1 317.00 317 317 0 0 0 0 0
.....................................................................................TACTGCACTTTCCCCGGCCCA.................................................... 21 1 1 297.00 297 296 1 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAA......................................................................................... 20 0 1 251.00 251 125 24 62 33 3 4
.....................................................................................TTTTGCACTTTCCCCGGCCCAT................................................... 22 1 1 226.00 226 225 0 1 0 0 0
.....................................................................................TACTGCACTTTCCCCGGCCC..................................................... 20 1 1 216.00 216 215 1 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCATAAA................................................ 25 1 1 208.00 208 139 65 4 0 0 0
.....................................................................................TATAGCACTTTCCCCGGCCCAT................................................... 22 1 1 191.00 191 190 1 0 0 0 0
.....................................................................................TACTGCACTTTCCCCGGCCCAC................................................... 22 2 1 182.00 182 182 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCATC.................................................. 23 1 1 174.00 174 171 3 0 0 0 0
..................................................AGGTCGCGGAAGGTTGCAATG....................................................................................... 21 0 1 169.00 169 50 43 15 52 4 5
.................................................TAGGTCGCGGAAGGTTGCAATGCAAA................................................................................... 26 2 1 169.00 169 102 14 53 0 0 0
......................................................................................ATTGCACTTTCCCCGGCCCA.................................................... 20 0 1 168.00 168 117 50 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCT..................................................... 20 1 1 137.00 137 115 15 7 0 0 0
.....................................................................................TATTGCACTTTCCCAGGCCCAT................................................... 22 1 1 134.00 134 131 0 3 0 0 0
.....................................................................................CATTGCACTTTCCCCGGCCCAT................................................... 22 1 1 119.00 119 114 5 0 0 0 0
.....................................................................................TATCGCACTTTCCCCGGCCCA.................................................... 21 1 1 115.00 115 115 0 0 0 0 0
.....................................................................................TATGGCACTTTCCCCGGCCCA.................................................... 21 1 1 114.00 114 111 0 3 0 0 0
.....................................................................................TATGGCACTTTCCCCGGCCC..................................................... 20 1 1 110.00 110 110 0 0 0 0 0
..................................................ATGTCGCGGAAGGTTGCAATGC...................................................................................... 22 1 1 109.00 109 102 0 1 6 0 0
....................................................................................CTATTGCACTTTCCCCGGCCCA.................................................... 22 1 1 107.00 107 105 1 1 0 0 0
.....................................................................................GATTGCACTTTCCCCGGCCCAT................................................... 22 1 1 105.00 105 101 4 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGA...................................................................................... 23 1 1 105.00 105 83 4 16 1 0 1
.....................................................................................TATTGCACTTTCACCGGCCCAT................................................... 22 1 1 104.00 104 104 0 0 0 0 0
.......................................................................................TTGCACTTTCCCCGGCCCAT................................................... 20 0 1 103.00 103 91 11 1 0 0 0
......................................................................................ATTGCACTTTCCCCGGCCCAC................................................... 21 1 1 102.00 102 101 1 0 0 0 0
.....................................................................................TATTGCACGTTCCCCGGCCCAT................................................... 22 1 1 100.00 100 3 96 1 0 0 0
.....................................................................................TATTGCAATTTCCCCGGCCCAT................................................... 22 1 1 98.00 98 96 0 2 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATA....................................................................................... 22 1 1 96.00 96 54 7 34 1 0 0
......................................................................................ATTGCACTTTCCCCGGCCC..................................................... 19 0 1 89.00 89 67 21 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCATTT................................................. 24 2 1 88.00 88 79 7 2 0 0 0
....................................................................................CTATTGCACTTTCCCCGGCCCAC................................................... 23 2 1 88.00 88 87 1 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCAAAA................................................. 24 2 1 88.00 88 46 41 1 0 0 0
.....................................................................................TATTGCACTTTCCCCTGCCCAT................................................... 22 1 1 87.00 87 69 2 15 0 1 0
......................................................................................AGTGCACTTTCCCCGGCCCAT................................................... 21 1 1 86.00 86 86 0 0 0 0 0
.....................................................................................TATCGCACTTTCCCCGGCCC..................................................... 20 1 1 85.00 85 85 0 0 0 0 0
....................................................................................CTATTGCACTTTCCCCGGCCC..................................................... 21 1 1 83.00 83 82 0 1 0 0 0
.....................................................................................TATGGCACTTTCCCCGGCCCAC................................................... 22 2 1 81.00 81 81 0 0 0 0 0
.....................................................................................TGTTGCACTTTCCCCGGCCCATA.................................................. 23 1 1 79.00 79 79 0 0 0 0 0
....................................................................................CGATTGCACTTTCCCCGGCCCAT................................................... 23 2 1 78.00 78 78 0 0 0 0 0
.....................................................................................TATCGCACTTTCCCCGGCCCAC................................................... 22 2 1 76.00 76 76 0 0 0 0 0
.....................................................................................TACTGCACTTTCCCCGGCCCATA.................................................. 23 1 1 76.00 76 76 0 0 0 0 0
.................................................TGGGTCGCGGAAGGTTGCAATGC...................................................................................... 23 1 1 74.00 74 72 0 2 0 0 0
.....................................................................................AATTGCACTTTCCCCGGCCCAT................................................... 22 1 1 69.00 69 64 4 1 0 0 0
......................................................................................ATTGCACTTTCCCCGGCCCATA.................................................. 22 0 1 69.00 69 37 29 3 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCT.................................................... 21 1 1 68.00 68 58 7 3 0 0 0
.....................................................................................TTTTGCACTTTCCCCGGCCC..................................................... 20 1 1 65.00 65 64 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGTCCCAT................................................... 22 1 1 62.00 62 38 1 23 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCATG.................................................. 23 1 1 62.00 62 56 5 1 0 0 0
.....................................................................................TTTTGCACTTTCCCCGGCCCAC................................................... 22 2 1 61.00 61 61 0 0 0 0 0
.....................................................................................TATTGGACTTTCCCCGGCCCAT................................................... 22 1 1 61.00 61 59 0 2 0 0 0
.................................................TGGGTCGCGGAAGGTTGCAATG....................................................................................... 22 1 1 61.00 61 61 0 0 0 0 0
.....................................................................................TATTGCACTTTACCCGGCCCAT................................................... 22 1 1 61.00 61 60 0 1 0 0 0
.....................................................................................TATTTCACTTTCCCCGGCCCAT................................................... 22 1 1 61.00 61 53 4 4 0 0 0
.....................................................................................TGTTGCACTTTCCCCGGCCCATT.................................................. 23 2 1 60.00 60 60 0 0 0 0 0
.....................................................................................TATAGCACTTTCCCCGGCCCA.................................................... 21 1 1 58.00 58 57 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCATAAAA............................................... 26 2 1 55.00 55 30 25 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAAC........................................................................................ 21 1 1 55.00 55 54 0 1 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGT...................................................................................... 23 1 1 55.00 55 39 3 10 3 0 0
.................................................TAGGTCGCGGAAGGTTGCAATT....................................................................................... 22 1 1 55.00 55 27 0 21 7 0 0
..................................................AGGTCGCGGAAGGTTGCAATGCGA.................................................................................... 24 1 1 54.00 54 2 0 35 17 0 0
.....................................................................................TATTGCACCTTCCCCGGCCCAT................................................... 22 1 1 52.00 52 31 20 1 0 0 0
.....................................................................................TACTGCACTTTCCCCGGCCCATT.................................................. 23 2 1 52.00 52 51 1 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCTAT................................................... 22 1 1 51.00 51 51 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCA.......................................................................................... 19 0 1 51.00 51 16 11 11 11 1 1
.....................................................................................TTTTGCACTTTCCCCGGCCCA.................................................... 21 1 1 50.00 50 50 0 0 0 0 0
.....................................................................................TGTTGCACTTTCCCCGGCCCAA................................................... 22 2 1 49.00 49 49 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGC....................................................... 18 0 1 49.00 49 42 7 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGCT..................................................................................... 24 1 1 47.00 47 38 2 7 0 0 0
.....................................................................................TATAGCACTTTCCCCGGCCC..................................................... 20 1 1 46.00 46 46 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCAC..................................................... 20 1 1 45.00 45 45 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATAA...................................................................................... 23 2 1 45.00 45 23 1 20 1 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCATTA................................................. 24 2 1 44.00 44 43 0 1 0 0 0
.....................................................................................TATTGCACGTTCCCCGGCCCA.................................................... 21 1 1 44.00 44 0 43 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGCCCCAT................................................... 22 1 1 43.00 43 34 1 8 0 0 0
.....................................................................................TATTGCACTTTTCCCGGCCCAT................................................... 22 1 1 42.00 42 42 0 0 0 0 0
.....................................................................................TATTGCACTTTCACCGGCCCA.................................................... 21 1 1 42.00 42 42 0 0 0 0 0
.....................................................................................TATTGCACATTCCCCGGCCCAT................................................... 22 1 1 40.00 40 6 33 1 0 0 0
.....................................................................................TATAGCACTTTCCCCGGCCCAC................................................... 22 2 1 40.00 40 40 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCCT................................................... 22 1 1 40.00 40 5 0 35 0 0 0
.....................................................................................TATTGCACTTTCCCCTGCCCA.................................................... 21 1 1 39.00 39 22 2 14 0 1 0
.....................................................................................TATTGCACTTTCCCCGGCCCATAT................................................. 24 1 1 38.00 38 36 2 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCAA.................................................... 21 1 1 36.00 36 18 15 3 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAAA........................................................................................ 21 1 1 35.00 35 18 4 9 4 0 0
.....................................................................................TGTTGCACTTTCCCCGGCC...................................................... 19 1 2 33.50 67 67 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATAAA..................................................................................... 24 3 1 33.00 33 14 3 16 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCAG................................................... 22 1 1 33.00 33 19 11 3 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGAAA.................................................................................... 25 3 1 32.00 32 21 3 8 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCC.................................................... 21 1 1 31.00 31 19 1 11 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGCAAAA.................................................................................. 27 3 1 31.00 31 17 7 7 0 0 0
..................................................AGGTCGCGGAAGGTTGCAATT....................................................................................... 21 1 1 30.00 30 1 1 1 22 5 0
....................................................................................CTATTGCACTTTCCCCGGCCCATA.................................................. 24 1 1 30.00 30 29 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGAC...................................................... 19 1 1 30.00 30 30 0 0 0 0 0
.....................................................................................CATTGCACTTTCCCCGGCCCA.................................................... 21 1 1 30.00 30 29 1 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGCC..................................................................................... 24 1 1 29.00 29 27 0 2 0 0 0
.....................................................................................TATTGCAATTTCCCCGGCCCA.................................................... 21 1 1 29.00 29 28 0 1 0 0 0
..................................................AGGTCGCGGAAGGTTGCAATGCGT.................................................................................... 24 0 1 28.00 28 6 5 4 12 0 1
.....................................................................................TATTGTACTTTCCCCGGCCCAT................................................... 22 1 1 27.00 27 27 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCTGGCCCAT................................................... 22 1 1 27.00 27 25 2 0 0 0 0
......................................................................................ATTGCACTTTCCCCGGCCCAA................................................... 21 1 1 27.00 27 14 12 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCGT................................................... 22 1 1 27.00 27 20 2 5 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGAA..................................................................................... 24 2 1 26.00 26 16 1 9 0 0 0
.....................................................................................TACTGCACTTTCCCCGGCCCAA................................................... 22 2 1 26.00 26 26 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCAGGCCCAC................................................... 22 2 1 26.00 26 26 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCAGCCCAT................................................... 22 1 1 26.00 26 22 1 3 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATTC...................................................................................... 23 1 1 25.00 25 1 1 22 1 0 0
.....................................................................................TATTGCACTTTACCCGGCCCA.................................................... 21 1 1 25.00 25 22 0 2 0 1 0
.....................................................................................TGTTGCACTTTCCCCGGCCCATAA................................................. 24 2 1 25.00 25 25 0 0 0 0 0
.....................................................................................TATTGCACTTTCACCGGCCC..................................................... 20 1 1 25.00 25 25 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCAGGCCC..................................................... 20 1 1 24.00 24 24 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGCAT.................................................................................... 25 1 1 24.00 24 13 2 9 0 0 0
...................................................................................TCTATTGCACTTTCCCCGGCCCAT................................................... 24 2 1 24.00 24 24 0 0 0 0 0
.....................................................................................TATCGCACTTTCCCCGGCCCATA.................................................. 23 1 1 24.00 24 23 1 0 0 0 0
.....................................................................................TATGGCACTTTCCCCGGCCCATT.................................................. 23 2 1 24.00 24 24 0 0 0 0 0
....................................................................................CGATTGCACTTTCCCCGGCCC..................................................... 21 2 1 24.00 24 24 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCTA.................................................... 21 1 1 23.00 23 20 1 2 0 0 0
.................................................TACGTCGCGGAAGGTTGCAATGC...................................................................................... 23 1 1 23.00 23 23 0 0 0 0 0
.....................................................................................TATGGCACTTTCCCCGGCCCATA.................................................. 23 1 1 23.00 23 23 0 0 0 0 0
......................................................................................ATTGCACTTTCCCCGGCCCATT.................................................. 22 1 1 23.00 23 17 6 0 0 0 0
.....................................................................................GATTGCACTTTCCCCGGCCC..................................................... 20 1 1 23.00 23 20 3 0 0 0 0
................................................CTAGGTCGCGGAAGGTTGCAATGC...................................................................................... 24 1 1 23.00 23 23 0 0 0 0 0
.......................................................................................TTGCACTTTCCCCGGCCCAC................................................... 20 1 1 22.00 22 22 0 0 0 0 0
......................................................................................ATTGCACTTTCCCCGGCC...................................................... 18 0 1 22.00 22 15 7 0 0 0 0
.....................................................................................TATTGCACTTTCCCCTGCCCAC................................................... 22 2 1 22.00 22 22 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCAGGCCCA.................................................... 21 1 1 22.00 22 22 0 0 0 0 0
.....................................................................................TATCGCACTTTCCCCGGCCCATT.................................................. 23 2 1 21.00 21 21 0 0 0 0 0
.....................................................................................TATTGCGCTTTCCCCGGCCCAT................................................... 22 1 1 21.00 21 20 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCA...................................................... 19 1 1 21.00 21 14 3 4 0 0 0
..................................................AGGTCGCGGAAGGTTGCAAT........................................................................................ 20 0 1 21.00 21 1 4 6 8 2 0
.....................................................................................TATTGCAATTTCCCCGGCCC..................................................... 20 1 1 21.00 21 21 0 0 0 0 0
.......................................................................................TTGCACTTTCCCCGGCCCA.................................................... 19 0 1 21.00 21 16 5 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCAAT.................................................. 23 2 1 21.00 21 20 1 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGTCCCA.................................................... 21 1 1 21.00 21 12 0 9 0 0 0
.....................................................................................TATTTCACTTTCCCCGGCCCA.................................................... 21 1 1 21.00 21 16 3 2 0 0 0
................................................CTAGGTCGCGGAAGGTTGCAATG....................................................................................... 23 1 1 20.00 20 20 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCTCAT................................................... 22 1 1 20.00 20 19 1 0 0 0 0
.....................................................................................TATTGCAATTTCCCCGGCCCAC................................................... 22 2 1 20.00 20 20 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCTAC................................................... 22 2 1 20.00 20 20 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTTCAATGC...................................................................................... 23 1 1 19.00 19 3 0 13 0 3 0
.....................................................................................TATTGCACTTTCCCCTGCCC..................................................... 20 1 1 19.00 19 14 0 5 0 0 0
.....................................................................................TATTGCACTTTCCCCCGCCCAT................................................... 22 1 1 19.00 19 3 0 16 0 0 0
.................................................TAGTTCGCGGAAGGTTGCAATGC...................................................................................... 23 1 1 19.00 19 19 0 0 0 0 0
.................................................TGGGTCGCGGAAGGTTGCAAT........................................................................................ 21 1 1 19.00 19 19 0 0 0 0 0
..................................................AGGTCGCGGAAGGTTGCAATTC...................................................................................... 22 1 1 19.00 19 0 0 11 7 1 0
.....................................................................................TGCTGCACTTTCCCCGGCCCAT................................................... 22 2 1 19.00 19 19 0 0 0 0 0
.....................................................................................GATTGCACTTTCCCCGGCCCA.................................................... 21 1 1 18.00 18 18 0 0 0 0 0
.......................................................................................TTGCACTTTCCCCGGCCC..................................................... 18 0 1 18.00 18 18 0 0 0 0 0
........................................................................................TGCACTTTCCCCGGCCCAT................................................... 19 0 1 18.00 18 16 2 0 0 0 0
......................................................................................ATCGCACTTTCCCCGGCCCAT................................................... 21 1 1 18.00 18 18 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCATTAA................................................ 25 2 1 18.00 18 14 3 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGACCCAT................................................... 22 1 1 18.00 18 16 1 1 0 0 0
.................................................TTGGTCGCGGAAGGTTGCAATGC...................................................................................... 23 1 1 18.00 18 18 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGCCA.................................................................................... 25 2 1 18.00 18 5 0 13 0 0 0
.....................................................................................CATTGCACTTTCCCCGGCCC..................................................... 20 1 1 17.00 17 17 0 0 0 0 0
.................................................TAGGTCGCGGCAGGTTGCAATGC...................................................................................... 23 1 1 17.00 17 12 0 5 0 0 0
.....................................................................................TATTGCACATTCCCCGGCCCA.................................................... 21 1 1 17.00 17 1 16 0 0 0 0
....................................................................................CTATTGCACTTTCCCCGGCCCATT.................................................. 24 2 1 17.00 17 16 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCAAAAA................................................ 25 2 1 17.00 17 6 11 0 0 0 0
.....................................................................................AATTGCACTTTCCCCGGCCCA.................................................... 21 1 1 17.00 17 17 0 0 0 0 0
.....................................................................................TATTGCACTTTCTCCGGCCCAT................................................... 22 1 1 16.00 16 15 0 1 0 0 0
.....................................................................................TATTGGACTTTCCCCGGCCCA.................................................... 21 1 1 16.00 16 16 0 0 0 0 0
.......................................................................................TGGCACTTTCCCCGGCCCAT................................................... 20 1 1 16.00 16 16 0 0 0 0 0
.................................................TACGTCGCGGAAGGTTGCAATG....................................................................................... 22 1 1 16.00 16 16 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCAT.................................................... 21 2 1 16.00 16 12 0 3 0 1 0
.....................................................................................TATTGGACTTTCCCCGGCCC..................................................... 20 1 1 16.00 16 16 0 0 0 0 0
.....................................................................................TATTGCACCTTCCCCGGCCCA.................................................... 21 1 1 16.00 16 4 11 1 0 0 0
.....................................................................................TATTACACTTTCCCCGGCCCAT................................................... 22 1 1 15.00 15 15 0 0 0 0 0
....................................................................................CTATTGCACTTTCCCCGGCCCAA................................................... 23 2 1 15.00 15 15 0 0 0 0 0
.....................................................................................TATTTCACTTTCCCCGGCCC..................................................... 20 1 1 15.00 15 15 0 0 0 0 0
.....................................................................................TATTGCACTTTCACCGGCCCAC................................................... 22 2 1 15.00 15 15 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCCATG....................................................................................... 22 1 1 15.00 15 0 0 14 0 0 1
.....................................................................................TTTTGCACTTTCCCCGGCCCATA.................................................. 23 1 1 15.00 15 15 0 0 0 0 0
.....................................................................................TATTGCACGTTCCCCGGCCCAA................................................... 22 2 1 14.00 14 0 14 0 0 0 0
.....................................................................................AATTGCACTTTCCCCGGCCC..................................................... 20 1 1 14.00 14 14 0 0 0 0 0
.....................................................................................TTTTGCACTTTCCCCGGCC...................................................... 19 1 1 14.00 14 14 0 0 0 0 0
.....................................................................................TATCGCACTTTCCCCGGCCCAA................................................... 22 2 1 14.00 14 14 0 0 0 0 0
.....................................................................................CATTGCACTTTCCCCGGCCCAC................................................... 22 2 2 13.50 27 27 0 0 0 0 0
.....................................................................................TATTGCACTTTGCCCGGCCCAT................................................... 22 1 1 13.00 13 12 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCG.................................................... 21 1 1 13.00 13 12 0 1 0 0 0
.....................................................................................TACTGCACTTTCCCCGGCCA..................................................... 20 2 1 13.00 13 13 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGCCCCA.................................................... 21 1 1 13.00 13 6 1 6 0 0 0
....................................................................................CGATTGCACTTTCCCCGGCCCA.................................................... 22 2 1 13.00 13 13 0 0 0 0 0
.........................................................................................GCACTTTCCCCGGCCCAT................................................... 18 0 1 13.00 13 12 1 0 0 0 0
.....................................................................................TATTGCACTTTCCCCCGCCCA.................................................... 21 1 1 13.00 13 0 0 13 0 0 0
.....................................................................................TATTGCACTTTCACAGGCCCAT................................................... 22 2 1 12.00 12 12 0 0 0 0 0
.....................................................................................TATTGCACTTCCCCCGGCCCAT................................................... 22 1 1 12.00 12 12 0 0 0 0 0
.....................................................................................TATTGCACATTCCCCGGCCC..................................................... 20 1 1 12.00 12 1 11 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAAAA....................................................................................... 22 2 1 12.00 12 2 4 4 2 0 0
.................................................TAGGTCGCGGAAGGCTGCAATGC...................................................................................... 23 1 1 12.00 12 7 1 4 0 0 0
.....................................................................................GATTGCACTTTCCCCGGCCCAC................................................... 22 2 1 12.00 12 12 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCAGGCCCATA.................................................. 23 1 1 12.00 12 11 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCGC................................................... 22 2 1 12.00 12 12 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGCAC.................................................................................... 25 2 1 12.00 12 10 0 2 0 0 0
.....................................................................................TATTGCACTTTACCCGGCCC..................................................... 20 1 1 12.00 12 11 0 1 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATC....................................................................................... 22 1 1 12.00 12 7 0 5 0 0 0
....................................................................................CGATTGCACTTTCCCCGGCCCAC................................................... 23 3 1 12.00 12 12 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGTCCAT................................................... 22 1 1 12.00 12 10 1 1 0 0 0
.................................................TAGGTCGAGGAAGGTTGCAATGC...................................................................................... 23 1 1 11.00 11 11 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATAC...................................................................................... 23 1 1 11.00 11 10 0 1 0 0 0
.....................................................................................TATTGCACTTTCCTCGGCCCAT................................................... 22 1 1 11.00 11 9 0 2 0 0 0
.....................................................................................TACTGCACTTTCCCCGGCC...................................................... 19 1 1 11.00 11 11 0 0 0 0 0
.....................................................................................TATTGCACTCTCCCCGGCCCAT................................................... 22 1 1 11.00 11 10 0 1 0 0 0
.................................................TAGGTCGAGGAAGGTTGCAATG....................................................................................... 22 1 1 11.00 11 9 0 2 0 0 0
.....................................................................................TATAGCACTTTCCCCGGCCCATA.................................................. 23 1 1 11.00 11 11 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCAGCCCA.................................................... 21 1 1 11.00 11 7 0 3 1 0 0
.....................................................................................TATTGCACTTTCCCCGTCCC..................................................... 20 1 1 11.00 11 1 0 10 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGG...................................................................................... 23 1 1 11.00 11 3 0 8 0 0 0
.....................................................................................TATTGCACCTTCCCCGGCCCAC................................................... 22 2 1 11.00 11 9 1 1 0 0 0
.....................................................................................TATAGCACTTTCCCCGGCCCAA................................................... 22 2 1 11.00 11 11 0 0 0 0 0
.....................................................................................TATTGCACTATCCCCGGCCCAT................................................... 22 1 1 11.00 11 10 1 0 0 0 0
.....................................................................................TATGGCACTTTCCCCGGCCCAA................................................... 22 2 1 11.00 11 11 0 0 0 0 0
..................................................AGCTCGCGGAAGGTTGCAATGC...................................................................................... 22 1 1 11.00 11 10 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCATAAAAA.............................................. 27 2 1 11.00 11 1 10 0 0 0 0
.................................................TGGGTCGCGGAAGGTTGCAATGCAA.................................................................................... 25 3 1 10.00 10 8 0 2 0 0 0
.....................................................................................TACTGCACTTTCCCCGGCCCATAA................................................. 24 2 1 10.00 10 10 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTTCAATG....................................................................................... 22 1 1 10.00 10 0 0 10 0 0 0
.....................................................................................TATTGCACCTTCCCCGGCCC..................................................... 20 1 1 10.00 10 8 2 0 0 0 0
.....................................................................................TATTGCACTTTCCCCTGCCCATA.................................................. 23 1 1 10.00 10 5 0 5 0 0 0
.....................................................................................TATTGCACTTTCCCCGACCC..................................................... 20 1 1 10.00 10 10 0 0 0 0 0
.....................................................................................TTTTGCACTTTCCCCGGCCCATT.................................................. 23 2 1 10.00 10 10 0 0 0 0 0
..................................................AGGTCGCGGAAGGTTGCAA......................................................................................... 19 0 1 10.00 10 5 1 0 2 2 0
.....................................................................................TATTGCACTTTCCCCGGCCCATTAAA............................................... 26 3 1 10.00 10 10 0 0 0 0 0
..................................................AGGTCTCGGAAGGTTGCAATGC...................................................................................... 22 1 1 10.00 10 5 0 3 1 1 0
.....................................................................................TATTGCACTGTCCCCGGCCCAT................................................... 22 1 1 10.00 10 9 0 1 0 0 0
......................................................................................ATTGCACTTTCCCCGGCCCATAA................................................. 23 1 1 10.00 10 10 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCATAC................................................. 24 1 1 10.00 10 9 1 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCAAA................................................... 22 2 1 10.00 10 5 5 0 0 0 0
.....................................................................................TATTGCACTTTACCCGGCCCAC................................................... 22 2 1 10.00 10 10 0 0 0 0 0
.................................................TGGGTCGCGGAAGGTTGCAATGCA..................................................................................... 24 2 1 10.00 10 10 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCTC..................................................... 20 1 1 10.00 10 8 1 1 0 0 0
.....................................................................................TGTTGCACTTTCCCCGGCCCATC.................................................. 23 2 1 10.00 10 10 0 0 0 0 0
.................................................CAGGTCGCGGAAGGTTGCAATGC...................................................................................... 23 1 1 10.00 10 9 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCAGGCCCATT.................................................. 23 2 1 9.00 9 9 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCCAT........................................................................................ 21 1 1 9.00 9 0 0 9 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCTT................................................... 22 1 1 9.00 9 5 1 2 1 0 0
.................................................TTGGTCGCGGAAGGTTGCAATG....................................................................................... 22 1 1 9.00 9 9 0 0 0 0 0
..................................................AGGGCGCGGAAGGTTGCAATGC...................................................................................... 22 1 1 9.00 9 2 0 2 3 0 2
....................................................................................GTATTGCACTTTCCCCGGCCCAT................................................... 23 0 1 9.00 9 1 8 0 0 0 0
.....................................................................................TATTGCACTTTCCCCCGCCC..................................................... 20 1 1 9.00 9 1 1 7 0 0 0
..................................................AGGTCGCGGAAGGTTTCAATGC...................................................................................... 22 1 1 9.00 9 0 0 5 2 2 0
.................................................TAGGTCGCGGAAGGTTGCCATGC...................................................................................... 23 1 1 9.00 9 0 0 9 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCACA.................................................. 23 1 1 9.00 9 7 2 0 0 0 0
.....................................................................................AATTGCACTTTCCCCGGCCCAC................................................... 22 2 1 9.00 9 9 0 0 0 0 0
..................................................AGGTCGCGGAAGGCTGCAATGC...................................................................................... 22 1 1 9.00 9 1 0 6 2 0 0
.....................................................................................TATTGCACTTTCCCCGCCCCAC................................................... 22 2 1 9.00 9 9 0 0 0 0 0
..................................................AGGTCGCGGAAGGGTGCAATGC...................................................................................... 22 1 1 9.00 9 3 0 5 1 0 0
.....................................................................................TATTGCATTTTCCCCGGCCCAT................................................... 22 1 1 9.00 9 8 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCAA..................................................... 20 2 3 8.67 26 11 15 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGCAAT................................................................................... 26 3 1 8.00 8 3 0 5 0 0 0
.................................................TAGGTCGCGGAAGGCTGCAATG....................................................................................... 22 1 1 8.00 8 5 0 3 0 0 0
......................................................................................ATTTCACTTTCCCCGGCCCAT................................................... 21 1 1 8.00 8 8 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCATTGC...................................................................................... 23 1 1 8.00 8 7 0 1 0 0 0
.....................................................................................TATTGCACGTTCCCCGGCCC..................................................... 20 1 1 8.00 8 0 8 0 0 0 0
.................................................TAGGTCGCGGAAGGTTTCAAT........................................................................................ 21 1 1 8.00 8 1 0 7 0 0 0
.....................................................................................TATTACACTTTCCCCGGCCCA.................................................... 21 1 1 8.00 8 5 0 3 0 0 0
......................................................................................AGTGCACTTTCCCCGGCCCATA.................................................. 22 1 1 8.00 8 8 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAAAAA...................................................................................... 23 3 1 8.00 8 3 4 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCCTA................................................... 22 2 1 8.00 8 7 1 0 0 0 0
.....................................................................................TATCGCACTTTCCCCGGCC...................................................... 19 1 1 8.00 8 8 0 0 0 0 0
.....................................................................................TATTGCACTTTCCCCGCCCC..................................................... 20 1 1 8.00 8 7 0 1 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGCAAC................................................................................... 26 3 1 8.00 8 7 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGGCCAAAA.................................................. 23 2 1 8.00 8 2 6 0 0 0 0
.................................................TAGTTCGCGGAAGGTTGCAATG....................................................................................... 22 1 1 8.00 8 7 0 1 0 0 0
.....................................................................................TATTGCACTTTCCCCGACCCA.................................................... 21 1 1 8.00 8 5 0 3 0 0 0
..................................................AGGCCGCGGAAGGTTGCAATGC...................................................................................... 22 1 1 8.00 8 3 0 3 1 0 1
.....................................................................................TACTGCACTTTCACCGGCCCAT................................................... 22 2 1 8.00 8 8 0 0 0 0 0
.....................................................................................TGTTGCAATTTCCCCGGCCCAT................................................... 22 2 1 8.00 8 8 0 0 0 0 0
.................................................TAGGTCGCGGAAGTTTGCAATGC...................................................................................... 23 1 1 8.00 8 8 0 0 0 0 0
.....................................................................................TATTGCACTTTACCCGGCCCATA.................................................. 23 1 1 8.00 8 8 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCACTG....................................................................................... 22 1 1 8.00 8 0 0 8 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATGCCAA................................................................................... 26 2 1 8.00 8 0 0 8 0 0 0
......................................................................................AGTGCACTTTCCCCGGCCCA.................................................... 20 1 2 7.50 15 15 0 0 0 0 0
......................................................................................AGTGCACTTTCCCCGGCCCAC................................................... 21 2 2 7.50 15 15 0 0 0 0 0
......................................................................................ATTGCACTTTCCCCGGCCA..................................................... 19 1 1 7.00 7 3 4 0 0 0 0
.....................................................................................TATTGCACTTTCCCCAGCCC..................................................... 20 1 1 7.00 7 7 0 0 0 0 0
.................................................TAGGTCGCGGAAGGTTGCAATTCAA.................................................................................... 25 3 1 7.00 7 0 0 7 0 0 0

Anti-sense strand reads

GCTTTTCAAAAGTCCTCGATTTTTCACAAATCTTGAAGCTAAAATAAACATCCAGCGCCTTCCAACGTTACGCATAAAACTTAGCATAACGTGAAAGGGGCCGGGTATCTATAATATGCTTGTCGTCGCTAGCGATAGACTCTCTTTATAAACAACGG
************************************((((((..(((((((.(((((.(((((((.((((((((..........))))))))))))))).))))).)))))))..)).)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V055
head
................................................CATCCAGCGCCTTCCAACGTT......................................................................................... 21 0 1 1.00 1 0 1 0
.................................................ATCCAGCGCCTTCCAACGTTA........................................................................................ 21 0 1 1.00 1 1 0 0
..................................................TCCAGCGCCTTCCAACGTTAC....................................................................................... 21 0 1 1.00 1 1 0 0
......................................................................................................GGGTATCCATAAGATGCTT..................................... 19 2 2 0.50 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:4132775-4132932 + dan-mir-311a CGAAAAGTTTTCAGG-AGCTAAAAAGT-GTTT------AGAAC------------------------------------------TTCGATTTTATTTGTAGGTCGCGGAAGGTTGCAATGCGTATTTTG-------AATC-----------------GTATTGCACTTTCCCCGGCCCATAGATATTATA-----------------------------------------------------------------------------------CGAACAGCAGCG--A-----------TCGCTA--TCTGAGAG--A---------------AAT-ATTTGTTGCC
droBip1 scf7180000396427:2575492-2575649 + CCGAAAGTGTTTAGA-AGTTAGCAAGT-GATT------ATGAT------------------------------------------TTCGATTTTATTTGTAGGTTGTGGAAGGTTGCAAAGCGTATTTTT-------AATC-----------------GTATTGCACTTTCCCCAGCCCATAGATATTATG-----------------------------------------------------------------------------------CGAATAGCAGCG--T-----------CCGGTA--TGTGAGTG--A---------------AAT-ATTTGTGGCC
droKik1 scf7180000302471:941649-941808 - AAAAATTTAG--ACA-ATTGTTCGGGT-ACTT------GGAAT------------------------------------------TTGCCTTTGATCTGTACGTCGGTGGGGGTGGCAATGGGCATTACCA----ACGTAC-----------------TTATTGCACTCGCCCCGGCCTATGGATTTGTGG-----------------------------------------------------------------------------------CAGCAACCAACG--A-----------GCTAAA--AGTGTAAT--T---------------TTAGACTATTTTCT
droFic1 scf7180000454039:1776129-1776265 - ATCTAAGCAAGACC-----------------------------------------------------------------------------CAAAATTCTGAGCCGTGGACAGTGATAATGCGATTTTT------ATTTGC-----------------GTATTGCACTGGTCCCGGCCTATAAAATT--GG-----------------------------------------------------------------------------------CGTAGAACGACG--A-----------AA------AG----AG--TGTTTTTTTATTTTTTTTT-ATTTGTTTCC
droEle1 scf7180000491201:736076-736236 - AAACATTTAAGAC---AGTTTAAGAAA-ATAT------TTAAT------------------------------------------TCGGCATTAATTTATATGTCGCTGGCGGTGACAATACGAGCATTTA---ATTTTAC-----------------GTATTGCACTGGCCCCGGCTAATAGAATTCTGC-----------------------------------------------------------------------------------CAGAAAACGACA--A-----------AAAAAA--AAGAAGGG--T---------------TTGATCTAAGACCT
droRho1 scf7180000780104:82171-82314 - AAGTTTATTGAAAAA----------------G------TTATT------------------------------------------TTTGCATTAATTTATATGTCGCTGGCGGTGACAATACAAGTTGTTGGTTTTTTTTC-----------------GTATTGCACTGGCCCCGGCTTATAAAATCCTGG-----------------------------------------------------------------------------------CATTAAACGGCG--A-----------AA------AG----TG--T---------------TCAAACTAAGTCCT
droBia1 scf7180000302291:2816307-2816460 + GGAAAGT-GCATAGA-AACTAACTTAA-AACTAGCAGTCGA--------------------------------------------CCAGCTTTATTTTGCAGGCCGAGGTGGGTGGCAATGCGATGCTT-----TCTTCCC-----------------GTATTGCACTTGCCCCGGCCTATAAACTCG-AG-----------------------------------------------------------------------------------CAAGAAGCGTAA--A-----------A-------AT----CG--GT--------------TTA-AATGGTTCCG
droTak1 scf7180000415401:99828-99972 - ATAAAAATGAAAATA-ATAG-----------T------GAAAC------------------------------------------TTTGCTGTAATTTACATGTCGCGGGCGGTGACAATGCGAGTTATGT---TTATTAC-----------------GTATTGCACTGGCCCCGGCCTATAAACTTC-GG-----------------------------------------------------------------------------------CTATAAACAGCA--A-----------AA------AA----TA--AT--------------TCAAATTAATTCCA
droEug1 scf7180000409474:1490147-1490246 + GAAAACTAAGTGTTA-------------------------------------------------------------------------------ATTTTT----TGTTAATA------------------------------------------------GT--TGTAGTTTTCGGCTTATAAAGTTCCAG-----------------------------------------------------------------------------------CAGAATAAATAA--A-----------TAGTTGGGAG----AGAAC---------------AGAGTTGAAATTCC
dm3 chr2R:16471463-16471544 - dme-mir-311 TTTTATGAGCAAAGT-------------AATTAG--------TTTTGTTGTGTTTTTAAACTCCTTGCAATAGGCGGCAAGACGG----------------------------T---------------------------GAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG---AAATTTCT
droSim2 2r:17040943-17041019 - dsi-mir-311 AAAGAATCATCATTG-AGCAA---AGT-AATTAG--------TTTTTT-------------TCCTTGCAATAGGCGGCAAGACAG----------------------------T---------------------------GAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG---AAATTTCT
droSec2 scaffold_1:14025571-14025738 - dse-mir-311 CAAAGTAATT----------------------AG--------TTTTTTT------------TCCTTGCAATAGGCGGCAAGACTG-------GAAAT----------------------------------------------------------------------------------------------TTCTAGATAATTTTTCGGACGGTATATGAGTCAATGTTTTCTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGAA-AAAGAAAAATAAA------------------------------------AGTGCTTGCA
droYak3 2R:12724776-12724937 + dya-mir-310 CGAATCATTTAAACAACG---------CA----------------TTA----------------------------------------------AAAAACA-----------GTTTAA----------------------------AAATATCTCACT---------------------------------TTCTAGATAGTTTTGCGGACGGTATCTGCGTCAATATTTCCTTGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGACTTGCATCG--A-----------AA------AG----TG--C---------------TTG---CAAATACA
droEre2 scaffold_4845:10618087-10618152 - der-mir-311c CAAAACATTTTAAATAAA---------AA----------------CTAA------------TACTAGTTATAGGTGGTAAAAAC----------------A-----------GTTGAA----------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CCCTACCCCT
droPer2 scaffold_4:2566596-2566729 + dpe_91 AGCGGAAGGGT-----------------GCAT------CGA--------------------------------------------GCTGCTTTGATTTGTAGGCCGTGGTTCTTGCAAATACGAATTC--------ATAAC-----------------GTATTGCACTAGCCCCGGTCCAAAAAACAA------------------------------------------------------------------------------------------TAGCAACG---CCGGCAACAGCAA------AG----T-------------------ATGTACAATTATTC
droVir3 scaffold_12875:13668983-13669096 - dvi-mir-311 ACAAGATTGCGCACA-ATTCAATTAAT-ATGT------GCAAG------------------------------------------CT----ATATTTTTCAGGCCGTGTCTA----------------------------------------------GTGTTGTTCAATTCCCGCCATGAAAAGTT------------------------------------------------------------------------------------AAAG--------------CTGGAAAAACTAG------------------------------------TGCGTCCGCA
droMoj3 scaffold_6496:9090541-9090665 - AAAATATTTAACA--------------------------------------------------------------------------CGTCTTAATTCGCAGATATTATAAT-----------------------------------------------------------------------------------------------GTGTAGTCTGCAATTTAAG-CTTCTTTGCTATCAT--------------ATTCCCAAGTAAGTTTCAAAAGAAAAAACG--A-----------AA------AA----TG--TC--------------AAATTTTCAGCTGC
droGri2 scaffold_15245:17564367-17564465 + CAAAATTAATAAA---AGTGT----------------------------------------------------------------------TAAATTTGCAGTTCGTGTTTA---------------------------------------------------GTGTTTTTTCCCGCTTAA-----------------------------------------------------------GCATCTTGCAATTTATATGGCTTGC-------------------------------------------AG----TT--AT--------------CTG---CATTAACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CGAAAAGTTTTCAGG-AGCTAAAAAGT-GTTT------AGAAC------------------------------------------TTCGATTTTATTTGTAGGTCGCGGAAGGTTGCAATGCGTATTTTG-------AATC-----------------GTATTGCACTTTCCCCGGCCCATAGATATTATA-----------------------------------------------------------------------------------CGAACAGCAGCG--A-----------TCGCTA--TCTGAGAG--A---------------AAT-ATTTGTTGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCAT.......................................................................................................................................................................22134173.0034173245630922783219
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCA........................................................................................................................................................................21110436.001043610838865473618
...............................................................................................................................................................TATTGCACTTTCCCCGGCCC.........................................................................................................................................................................2018113.0081133857553172003
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCAC.......................................................................................................................................................................2216649.0066491166334010
...................................................................................................TAGGTCGCGGAAGGTTGCAATGC..................................................................................................................................................................................................................................2312768.0027682401905485611220
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCATA......................................................................................................................................................................2312401.002401301201681102
...................................................................................................TAGGTCGCGGAAGGTTGCAATG...................................................................................................................................................................................................................................2212067.00206718314214225315
...............................................................................................................................................................TATTGCACTTTCCCCGGCC..........................................................................................................................................................................1911665.001665169142266701
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCATT......................................................................................................................................................................2311574.001574147137845103
....................................................................................................AGGTCGCGGAAGGTTGCAATGC..................................................................................................................................................................................................................................2211374.001374973623932041587
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCAA.......................................................................................................................................................................2211369.001369297104526001
...................................................................................................TAGGTCGCGGAAGGTTGCAAT....................................................................................................................................................................................................................................211826.00826245082592294
................................................................................................................................................................ATTGCACTTTCCCCGGCCCAT.......................................................................................................................................................................211633.006331534782000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCA.........................................................................................................................................................................201608.0060813343243000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCATAA.....................................................................................................................................................................241499.004996142810000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGCAA................................................................................................................................................................................................................................251468.0046837223208000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGCA.................................................................................................................................................................................................................................241358.0035829219109010
....................................................................................................AGGTCGCGGAAGGTTGCAATGCG.................................................................................................................................................................................................................................231355.00355156423081109
...................................................................................................TAGGTCGCGGAAGGTTGCAA.....................................................................................................................................................................................................................................201251.0025124125624333
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCATC......................................................................................................................................................................231174.0017431710000
....................................................................................................AGGTCGCGGAAGGTTGCAATG...................................................................................................................................................................................................................................211169.001694350155524
................................................................................................................................................................ATTGCACTTTCCCCGGCCCA........................................................................................................................................................................201168.00168501171000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCT.........................................................................................................................................................................201137.00137151157000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGA..................................................................................................................................................................................................................................231105.0010548316110
.................................................................................................................................................................TTGCACTTTCCCCGGCCCAT.......................................................................................................................................................................201103.0010311911000
................................................................................................................................................................ATTGCACTTTCCCCGGCCCAC.......................................................................................................................................................................211102.0010211010000
...................................................................................................TAGGTCGCGGAAGGTTGCAATA...................................................................................................................................................................................................................................22196.009675434010
................................................................................................................................................................ATTGCACTTTCCCCGGCCC.........................................................................................................................................................................19189.008921671000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCATTT.....................................................................................................................................................................24188.00887792000
................................................................................................................................................................ATTGCACTTTCCCCGGCCCATA......................................................................................................................................................................22169.006929373000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCT........................................................................................................................................................................21168.00687583000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCATG......................................................................................................................................................................23162.00625561000
...................................................................................................TAGGTCGCGGAAGGTTGCAAC....................................................................................................................................................................................................................................21155.00550541000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGT..................................................................................................................................................................................................................................23155.005533910030
...................................................................................................TAGGTCGCGGAAGGTTGCAATT...................................................................................................................................................................................................................................22155.005502721070
....................................................................................................AGGTCGCGGAAGGTTGCAATGCGA................................................................................................................................................................................................................................24154.005402350170
...................................................................................................TAGGTCGCGGAAGGTTGCA......................................................................................................................................................................................................................................19151.00511116111111
...............................................................................................................................................................TATTGCACTTTCCCCGGC...........................................................................................................................................................................18149.00497420000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGCT.................................................................................................................................................................................................................................24147.00472387000
...................................................................................................TAGGTCGCGGAAGGTTGCAATAA..................................................................................................................................................................................................................................23145.004512320010
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCATTA.....................................................................................................................................................................24144.00440431000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCATAT.....................................................................................................................................................................24138.00382360000
...................................................................................................TAGGTCGCGGAAGGTTGCAAA....................................................................................................................................................................................................................................21135.00354189040
...................................................................................................TAGGTCGCGGAAGGTTGCAATAAA.................................................................................................................................................................................................................................24133.003331416000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCAG.......................................................................................................................................................................22133.003311193000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGAAA................................................................................................................................................................................................................................25132.00323218000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCC........................................................................................................................................................................21131.003111911000
....................................................................................................AGGTCGCGGAAGGTTGCAATT...................................................................................................................................................................................................................................21130.00301110225
...................................................................................................TAGGTCGCGGAAGGTTGCAATGCC.................................................................................................................................................................................................................................24129.00290272000
....................................................................................................AGGTCGCGGAAGGTTGCAATGCGT................................................................................................................................................................................................................................24128.00285641120
................................................................................................................................................................ATTGCACTTTCCCCGGCCCAA.......................................................................................................................................................................21127.002712141000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGAA.................................................................................................................................................................................................................................24126.00261169000
................................................................................................................................................................ATTGCACTTTCCCCGGCCCATT......................................................................................................................................................................22123.00236170000
.................................................................................................................................................................TTGCACTTTCCCCGGCCCAC.......................................................................................................................................................................20122.00220220000
................................................................................................................................................................ATTGCACTTTCCCCGGCC..........................................................................................................................................................................18122.00227150000
...............................................................................................................................................................TATTGCACTTTCCCCGGCA..........................................................................................................................................................................19121.00213144000
....................................................................................................AGGTCGCGGAAGGTTGCAAT....................................................................................................................................................................................................................................20121.0021416082
.................................................................................................................................................................TTGCACTTTCCCCGGCCCA........................................................................................................................................................................19121.00215160000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCAAT......................................................................................................................................................................23121.00211200000
.................................................................................................................................................................TTGCACTTTCCCCGGCCC.........................................................................................................................................................................18118.00180180000
..................................................................................................................................................................TGCACTTTCCCCGGCCCAT.......................................................................................................................................................................19118.00182160000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGCCA................................................................................................................................................................................................................................25118.00180513000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCAT........................................................................................................................................................................21116.00160123001
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCG........................................................................................................................................................................21113.00130121000
...................................................................................................................................................................GCACTTTCCCCGGCCCAT.......................................................................................................................................................................18113.00131120000
...................................................................................................TAGGTCGCGGAAGGTTGCAAAA...................................................................................................................................................................................................................................22112.0012424020
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCGC.......................................................................................................................................................................22112.00120120000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGCAC................................................................................................................................................................................................................................25112.00120102000
...................................................................................................TAGGTCGCGGAAGGTTGCAATC...................................................................................................................................................................................................................................22112.0012075000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGG..................................................................................................................................................................................................................................23111.0011038000
....................................................................................................AGGTCGCGGAAGGTTGCAA.....................................................................................................................................................................................................................................19110.0010150022
................................................................................................................................................................ATTGCACTTTCCCCGGCCCATAA.....................................................................................................................................................................23110.00100100000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCATAC.....................................................................................................................................................................24110.0010190000
..............................................................................................................................................................GTATTGCACTTTCCCCGGCCCAT.......................................................................................................................................................................2319.009810000
...............................................................................................................................................................TATTGCACTTTCCCCGGCAA.........................................................................................................................................................................2038.672615110000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGCAAT...............................................................................................................................................................................................................................2618.008035000
...................................................................................................TAGGTCGCGGAAGGTTGCAAAAA..................................................................................................................................................................................................................................2318.008431000
...............................................................................................................................................................TATTGCACTTTCCCCGGCCCTA.......................................................................................................................................................................2218.008170000
...................................................................................................TAGGTCGCGGAAGGTTGCAATGCAAC...............................................................................................................................................................................................................................2618.008071000
................................................................................................................................................................ATTGCACTTTCCCCGGCCA.........................................................................................................................................................................1917.007430000
droBip1
CCGAAAGTGTTTAGA-AGTTAGCAAGT-GATT------ATGAT------------------------------------------TTCGATTTTATTTGTAGGTTGTGGAAGGTTGCAAAGCGTATTTTT-------AATC-----------------GTATTGCACTTTCCCCAGCCCATAGATATTATG-----------------------------------------------------------------------------------CGAATAGCAGCG--T-----------CCGGTA--TGTGAGTG--A---------------AAT-ATTTGTGGCCSizeHit CountTotal NormTotal
No Reads
droKik1
AAAAATTTAG--ACA-ATTGTTCGGGT-ACTT------GGAAT------------------------------------------TTGCCTTTGATCTGTACGTCGGTGGGGGTGGCAATGGGCATTACCA----ACGTAC-----------------TTATTGCACTCGCCCCGGCCTATGGATTTGTGG-----------------------------------------------------------------------------------CAGCAACCAACG--A-----------GCTAAA--AGTGTAAT--T---------------TTAGACTATTTTCTSizeHit CountTotal NormTotal
No Reads
droFic1
ATCTAAGCAAGACC-----------------------------------------------------------------------------CAAAATTCTGAGCCGTGGACAGTGATAATGCGATTTTT------ATTTGC-----------------GTATTGCACTGGTCCCGGCCTATAAAATT--GG-----------------------------------------------------------------------------------CGTAGAACGACG--A-----------AA------AG----AG--TGTTTTTTTATTTTTTTTT-ATTTGTTTCCSizeHit CountTotal NormTotal
No Reads
droEle1
AAACATTTAAGAC---AGTTTAAGAAA-ATAT------TTAAT------------------------------------------TCGGCATTAATTTATATGTCGCTGGCGGTGACAATACGAGCATTTA---ATTTTAC-----------------GTATTGCACTGGCCCCGGCTAATAGAATTCTGC-----------------------------------------------------------------------------------CAGAAAACGACA--A-----------AAAAAA--AAGAAGGG--T---------------TTGATCTAAGACCTSizeHit CountTotal NormTotal
No Reads
droRho1
AAGTTTATTGAAAAA----------------G------TTATT------------------------------------------TTTGCATTAATTTATATGTCGCTGGCGGTGACAATACAAGTTGTTGGTTTTTTTTC-----------------GTATTGCACTGGCCCCGGCTTATAAAATCCTGG-----------------------------------------------------------------------------------CATTAAACGGCG--A-----------AA------AG----TG--T---------------TCAAACTAAGTCCTSizeHit CountTotal NormTotal
No Reads
droBia1
GGAAAGT-GCATAGA-AACTAACTTAA-AACTAGCAGTCGA--------------------------------------------CCAGCTTTATTTTGCAGGCCGAGGTGGGTGGCAATGCGATGCTT-----TCTTCCC-----------------GTATTGCACTTGCCCCGGCCTATAAACTCG-AG-----------------------------------------------------------------------------------CAAGAAGCGTAA--A-----------A-------AT----CG--GT--------------TTA-AATGGTTCCGSizeHit CountTotal NormTotal
No Reads
droTak1
ATAAAAATGAAAATA-ATAG-----------T------GAAAC------------------------------------------TTTGCTGTAATTTACATGTCGCGGGCGGTGACAATGCGAGTTATGT---TTATTAC-----------------GTATTGCACTGGCCCCGGCCTATAAACTTC-GG-----------------------------------------------------------------------------------CTATAAACAGCA--A-----------AA------AA----TA--AT--------------TCAAATTAATTCCASizeHit CountTotal NormTotal
No Reads
droEug1
GAAAACTAAGTGTTA-------------------------------------------------------------------------------ATTTTT----TGTTAATA------------------------------------------------GT--TGTAGTTTTCGGCTTATAAAGTTCCAG-----------------------------------------------------------------------------------CAGAATAAATAA--A-----------TAGTTGGGAG----AGAAC---------------AGAGTTGAAATTCCSizeHit CountTotal NormTotal
No Reads
dm3
TTTTATGAGCAAAGT-------------AATTAG--------TTTTGTTGTGTTTTTAAACTCCTTGCAATAGGCGGCAAGACGG----------------------------T---------------------------GAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG---AAATTTCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................TTTGTTGTGTTTTTAAACTCC............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................GCAATAGGCGGCAAGACGG----------------------------T---------------------------...............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................TGCAATAGGCGGCAAGACGG----------------------------T---------------------------...............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droSim2
AAAGAATCATCATTG-AGCAA---AGT-AATTAG--------TTTTTT-------------TCCTTGCAATAGGCGGCAAGACAG----------------------------T---------------------------GAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG---AAATTTCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CAAAGTAATT----------------------AG--------TTTTTTT------------TCCTTGCAATAGGCGGCAAGACTG-------GAAAT----------------------------------------------------------------------------------------------TTCTAGATAATTTTTCGGACGGTATATGAGTCAATGTTTTCTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGAA-AAAGAAAAATAAA------------------------------------AGTGCTTGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGA...................................................................................22116540.001654013468452699328
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTG....................................................................................2111017.001017718626627
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAA..................................................................................231904.00904699218518
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGA...................................................................................211846.008467950483
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAA.................................................................................241533.0053340301237
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAT..................................................................................231125.00125851345
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGT...................................................................................22185.0085597154
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCT.....................................................................................20183.0083551252
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAA................................................................................25175.0075541191
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAA..................................................................................22159.005956120
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGTT.......................................................................................................................23148.004840152
.....................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGA...................................................................................20143.004336070
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAT.................................................................................24137.003714311
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTG....................................................................................20136.003631050
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAA.................................................................................23129.002928010
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAC..................................................................................23121.002117040
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAA...............................................................................26120.002016040
..................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTGA...................................................................................23119.001919000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGC.......................................................................................18115.001541100
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAG..................................................................................23115.001510050
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGC...................................................................................22114.001411030
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGG...................................................................................22111.00116050
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTT....................................................................................2119.0098010
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGG...................................................................................2118.0088000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAT..................................................................................2217.0077000
......................................................................................................................................................................................................................................................TGCACATTCACCGGCCTGA...................................................................................1917.0077000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAC.................................................................................2416.0061140
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGT........................................................................................................................2216.0065010
.......................................................................................................................................................................................................................................................GCACATTCACCGGCCTGA...................................................................................1816.0065010
...............................................................................................................................................................................................................GGACGGTATATGAGTCAATGTT.......................................................................................................................2216.0066000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCC......................................................................................1915.0053110
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAT................................................................................2515.0050140
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGT...................................................................................2114.0043100
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAA................................................................................2414.0044000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTTT...................................................................................2214.0044000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAC..................................................................................2213.0033000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGTT..................................................................................2313.0031200
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGATT.................................................................................2413.0031011
.............................................................................................................................................................................................................TCGGACGGTATATGAGTCAATG.........................................................................................................................2212.0020020
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTC....................................................................................2112.0021010
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAT...............................................................................2612.0020101
.....................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTG....................................................................................1912.0021010
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGTTAA.....................................................................................................................2512.0021010
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGTTA......................................................................................................................2412.0021010
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTA....................................................................................2112.0022000
.....................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGAT..................................................................................2112.0022000
.............................................................................................................................................................................................................TCGGACGGTATATGAGTCAATGT........................................................................................................................2312.0021010
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGTTT......................................................................................................................2412.0022000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAG.................................................................................2411.0010010
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCG.....................................................................................2011.0010001
...............................................................................................................................................................................................................GGACGGTATATGAGTCAATGTTT......................................................................................................................2311.0011000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAG................................................................................2511.0011000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCGA....................................................................................2111.0011000
.....................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGAA..................................................................................2111.0011000
.............................................................................................................................................................................................................TCGGACGGTATATGAGTCAATGTAA......................................................................................................................2511.0011000
..............................................................................................................................................................................................................CGGACGGTATATGAGTCAATGTTTT.....................................................................................................................2511.0011000
..................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTGAAA.................................................................................2511.0011000
...............................................................................................................................................................................................................................................AATATATTGCACATTCACCGG........................................................................................2111.0011000
......................................................................................................................................................................................................................................................TGCACATTCACCGGCCTGAA..................................................................................2011.0011000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTTC...................................................................................2111.0011000
droYak3
CGAATCATTTAAACAACG---------CA----------------TTA----------------------------------------------AAAAACA-----------GTTTAA----------------------------AAATATCTCACT---------------------------------TTCTAGATAGTTTTGCGGACGGTATCTGCGTCAATATTTCCTTGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGACTTGCATCG--A-----------AA------AG----TG--C---------------TTG---CAAATACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGA...................................................................................22129661.0029661307935114039587814114201018
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAA..................................................................................2313321.0033212174523541990011000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTG....................................................................................2112270.0022709395266554511130000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAA.................................................................................2411775.00177596971008561040000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCC......................................................................................1911175.001175387112720000010
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGA...................................................................................211670.00670059162170000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAT..................................................................................231549.0054932242249210131000
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATT.......................................................................................................................231219.00219012677140020000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAA................................................................................251189.0018901146770010000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGT...................................................................................221162.001622843422502220000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAC..................................................................................231134.0013442110720000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCT.....................................................................................201133.00133156311600360200
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGG...................................................................................221123.00123643011180000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGC...................................................................................22195.00953351380000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAT.................................................................................24179.007932046100000000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAA..................................................................................22178.00780482910000000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAA.................................................................................23166.00660531300000000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTG....................................................................................20162.0062058400000000
.....................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGA...................................................................................20137.0037028900000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAA...............................................................................26129.0029025400000000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAT..................................................................................22127.00271151100000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGATT.................................................................................24125.002567750000000
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATAT........................................................................................................................22123.0023071050010000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAC.................................................................................24123.0023041810000000
..........................................................................................................................................................................................................................................................CATTCACCGGCCTGA...................................................................................15122.0022000000000022
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAG..................................................................................23120.002019820000000
.......................................................................................................................................................................................................................................................GCACATTCACCGGCCTGA...................................................................................18119.0019110440000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAG.................................................................................24119.001917830000000
..................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTGA...................................................................................23115.0015012210000000
...............................................................................................................................................................................................................GGACGGTATCTGCGTCAATATT.......................................................................................................................22113.0013013000000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGTT..................................................................................23111.001192000000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCC.....................................................................................20111.0011001100000000
......................................................................................................................................................................................................................................................TGCACATTCACCGGCCTGA...................................................................................1919.00907200000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGACT.................................................................................2418.00823200010000
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTAA.....................................................................................................................2517.00703310000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAC................................................................................2517.00702500000000
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATTA......................................................................................................................2416.00605010000000
.....................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGAA..................................................................................2116.00601500000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGC.......................................................................................1816.00600320010000
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATA.........................................................................................................................2116.00601211010000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTT....................................................................................2115.00504100000000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAC..................................................................................2215.00504100000000
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAAT..........................................................................................................................2015.00520300000000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAA................................................................................2415.00504100000000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCT.....................................................................................1915.00505000000000
.....................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTG....................................................................................1915.00504100000000
..............................................................................................................................................................................................................CGGACGGTATCTGCGTCAATATC.......................................................................................................................2314.00400400000000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAAT.................................................................................2314.00404000000000
.....................................................................................................................................................................................................................................................TTGCACATTCACCGGCCTGAAA.................................................................................2214.00402200000000
.........................................................................................................................................................................................................................................................ACATTCACCGGCCTGAAA.................................................................................1814.00401300000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTA....................................................................................2113.00312000000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAGT.................................................................................2413.00310100010000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGT...................................................................................2113.00303000000000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGATT.................................................................................2313.00302100000000
....................................................................................................................................................................................................................................................ATTGCACATTCACCGGCCTGAG..................................................................................2213.00303000000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAG................................................................................2513.00300210000000
..................................................................................................................................................................................................................................................ATATTGCACATTCACCGGCCTG....................................................................................2212.00202000000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGTC..................................................................................2312.00210010000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAT...............................................................................2612.00201100000000
...................................................................................................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAT................................................................................2512.00201100000000
droEre2
CAAAACATTTTAAATAAA---------AA----------------CTAA------------TACTAGTTATAGGTGGTAAAAAC----------------A-----------GTTGAA----------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CCCTACCCCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droPer2
AGCGGAAGGGT-----------------GCAT------CGA--------------------------------------------GCTGCTTTGATTTGTAGGCCGTGGTTCTTGCAAATACGAATTC--------ATAAC-----------------GTATTGCACTAGCCCCGGTCCAAAAAACAA------------------------------------------------------------------------------------------TAGCAACG---CCGGCAACAGCAA------AG----T-------------------ATGTACAATTATTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCA........................................................................................................................................................................211376.00376529170208
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAA.......................................................................................................................................................................221207.00207118617102
...............................................................................................................................................................TATTGCACTAGCCCCGGTCC.........................................................................................................................................................................201200.00200215628509
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAAA......................................................................................................................................................................23156.00560488000
...............................................................................................................................................................TATTGCACTAGCCCCGGTC..........................................................................................................................................................................19142.00422268303
...............................................................................................................................................................TATTGCACTAGCCCCGGTCA.........................................................................................................................................................................20129.00290223004
................................................................................................................................................................ATTGCACTAGCCCCGGTCCA........................................................................................................................................................................20128.00280280000
................................................................................................................................................................ATTGCACTAGCCCCGGTCCAA.......................................................................................................................................................................21124.00240240000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAA....................................................................................................................................................................25119.00190181000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAA.....................................................................................................................................................................24117.00170152000
................................................................................................................................................................ATTGCACTAGCCCCGGTCC.........................................................................................................................................................................19114.00140140000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCT.........................................................................................................................................................................20112.0012061005
....................................................................................................AGGCCGTGGTTCTTGCAAATACG.................................................................................................................................................................................................................................23110.0010091000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCG.........................................................................................................................................................................2015.005010004
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCT........................................................................................................................................................................2115.005011003
................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAA......................................................................................................................................................................2214.004040000
....................................................................................................AGGCCGTGGTTCTTGCAAATACGA................................................................................................................................................................................................................................2414.004040000
...............................................................................................................................................................TATTGCACTAGCCCCGGT...........................................................................................................................................................................1814.004040000
....................................................................................................AGGCCGTGGTTCTTGCAAAT....................................................................................................................................................................................................................................2013.003001002
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAT.......................................................................................................................................................................2213.003020100
....................................................................................................AGGCCGTGGTTCTTGCAAATA...................................................................................................................................................................................................................................2113.003001002
...............................................................................................................................................................TATTGCACTAGCCCCGGTT..........................................................................................................................................................................1912.002010100
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAAT......................................................................................................................................................................2312.002011000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAAA...................................................................................................................................................................2612.002020000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCC........................................................................................................................................................................2112.002000101
.................................................................................................................................................................TTGCACTAGCCCCGGTCCAA.......................................................................................................................................................................2012.002020000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCGT.......................................................................................................................................................................2212.002000002
...............................................................................................................................................................TATTGCACTAGCCCCGGTCTC........................................................................................................................................................................2112.002000002
...............................................................................................................................................................TATTGCACTAGCCCCGGTTA.........................................................................................................................................................................2012.002010001
...............................................................................................................................................................TATTGCACTAGCCCCGGTCTT........................................................................................................................................................................2112.002000002
................................................................................................................................................................ATTGCACTAGCCCCGGTC..........................................................................................................................................................................1812.002020000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCGTT......................................................................................................................................................................2312.002000002
................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAAA....................................................................................................................................................................2412.002020000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAAAA..................................................................................................................................................................2711.001010000
....................................................................................................AGGCCGTGGTTCTTGCAAATACGT................................................................................................................................................................................................................................2411.001000001
.................................................................................................................................................................TTGCACTAGCCCCGGTCCAAA......................................................................................................................................................................2111.001010000
...............................................................................................................................................................TATTGCACTAGCCCCGGTA..........................................................................................................................................................................1911.001000001
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCCT.......................................................................................................................................................................2211.001010000
.....................................................................................................GGCCGTGGTTCTTGCAAATACG.................................................................................................................................................................................................................................2211.001010000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAC.......................................................................................................................................................................2211.001010000
....................................................................................................AGGCCGTGGTTCTTGCAAATACA.................................................................................................................................................................................................................................2311.001010000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAATG.....................................................................................................................................................................2411.001010000
...............................................................................................................................................................TATTGCACTAGCCCCGGTAT.........................................................................................................................................................................2011.001001000
..................................................................................................................................................................TGCACTAGCCCCGGTCCA........................................................................................................................................................................1811.001010000
..............................................................................................................................................................GTATTGCACTAGCCCCGGTCCAA.......................................................................................................................................................................2311.001010000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCTTT.......................................................................................................................................................................2211.001010000
...............................................................................................................................................................TATTGCACTAGCCCCGGTTT.........................................................................................................................................................................2011.001000100
................................................................................................................................................................ATTGCACTAGCCCCGGTCCCC.......................................................................................................................................................................2111.001010000
...............................................................................................................................................................TATTGCACTAGCCCCGGTAA.........................................................................................................................................................................2011.001010000
................................................................................................................................................................ATTGCACTAGCCCCGGTCCAC.......................................................................................................................................................................2111.001010000
...................................................................................................................................................................GCACTAGCCCCGGTCCAA.......................................................................................................................................................................1811.001010000
.................................................................................................................................................................TTGCACTAGCCCCGGTCA.........................................................................................................................................................................1811.001010000
...............................................................................................................................................................TATTGCACTAGCCCCGGTTTT........................................................................................................................................................................2111.001010000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAG.......................................................................................................................................................................2211.001010000
................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAT......................................................................................................................................................................2211.001010000
................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAA.....................................................................................................................................................................2311.001010000
................................................................................................................................................................ATTGCACTAGCCCCGGTCA.........................................................................................................................................................................1911.001010000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCAC........................................................................................................................................................................2111.001010000
...............................................................................................................................................................TATTGCACTAGCCCCGGTCCAAGT.....................................................................................................................................................................2411.001000001
droVir3
ACAAGATTGCGCACA-ATTCAATTAAT-ATGT------GCAAG------------------------------------------CT----ATATTTTTCAGGCCGTGTCTA----------------------------------------------GTGTTGTTCAATTCCCGCCATGAAAAGTT------------------------------------------------------------------------------------AAAG--------------CTGGAAAAACTAG------------------------------------TGCGTCCGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................AGTT------------------------------------------------------------------------------------AAAG--------------CTGGAAAAACTAG------------------------------------..........2111.001000000001000000000000000000000000000000000000000000000000000000
..........................................................................................................TGTCTA----------------------------------------------GTGTTGTTCAATTCCCGCCA..........................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................GCCATGAAAAGTT------------------------------------------------------------------------------------AAAG--------------CTGGAAAA...................................................2511.001000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................GTTGTTCAATTCCCGCC...........................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................TATTTTTCAGGCCGTGTCTA----------------------------------------------G.............................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................................TTTTCAGGCCGTGTCTA----------------------------------------------GTGT..........................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
AAAATATTTAACA--------------------------------------------------------------------------CGTCTTAATTCGCAGATATTATAAT-----------------------------------------------------------------------------------------------GTGTAGTCTGCAATTTAAG-CTTCTTTGCTATCAT--------------ATTCCCAAGTAAGTTTCAAAAGAAAAAACG--A-----------AA------AA----TG--TC--------------AAATTTTCAGCTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CAAAATTAATAAA---AGTGT----------------------------------------------------------------------TAAATTTGCAGTTCGTGTTTA---------------------------------------------------GTGTTTTTTCCCGCTTAA-----------------------------------------------------------GCATCTTGCAATTTATATGGCTTGC-------------------------------------------AG----TT--AT--------------CTG---CATTAACCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/15/2015 at 02:22 PM