ID:

dan_1791

 Coordinate:

scaffold_13266:4997566-4997716 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.8 -24.4 -24.2 -24.1

Flybase annnotation

exon [dana_GLEANR_12827:9]; CDS [Dana\GF12810-cds]; intron [Dana\GF12810-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCACACCTCGCGCCAGATCTCGATCAGCAGTGAGCTGCTGAACGAGCCCAGCTCCCTGCCCCTGGTGGTGGTCATACCCAATAGCTCCGGTGAACAGACTTACGACGATACCCCGCTGTGAGCCGGGTAGGGGAGACCTGTGCTGGCCTGTGATTAACCAATGGAGCTCTGCATGGGTGAACCGGTGTCCGGTCTATTATCCATAATTTAGTAACATATATATAGTCTGACAAACCGTACCATTTTAAAAC
**********************************************************************************************************...(((((((.((.((((((((.......))))).))).))..)))......................))))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 V105
male body		 M058
embryo
 V055
head
..............................................................................................................................................................CAATGGAGCTCTGCATGGGT......................................................................... 20 0 1 2.00 2 0 2 0 0 0
..........................................................................................................GATACCCCGCTGTGAGCCGG............................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0
....................................................................................................................................................................AGCTCTGCATGGGTGAACCGG.................................................................. 21 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................GCATGGGTGAACCGGTGTCC............................................................. 20 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................TAGGGGAGACCTGTGCTGGCC....................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
.......................................................................................................................................................GATTAACCAATGGAGCTCTGC............................................................................... 21 0 1 1.00 1 0 0 1 0 0
..........................................................................................................................................................TAACCAATGGAGCTCTGCATG............................................................................ 21 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................TGGAGCTCTGCATGGGTGAAC..................................................................... 21 0 1 1.00 1 0 1 0 0 0
....................................................................TGGTCATACCCAATAGCTCCG.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
.................................................................................................ACTTACGAGGATACCCCGCTGTGAGCC............................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................ATGGGTGAACCGGTGTCCGGC.......................................................... 21 1 1 1.00 1 0 0 0 1 0
.........................................................................................................CGATACCCCGCTGTGAGCCGG............................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0
..............................................................................................................................................................CAATGGAGCTCTGCATGGG.......................................................................... 19 0 1 1.00 1 1 0 0 0 0
..............................................................................................GAGACTTACGACGATACCCCG........................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................AGCTCTGAATGGGGGAACCC................................................................... 20 3 7 0.14 1 0 0 0 1 0
....................................................................................................................................................TGTGAGTACCCCATGGAGCT................................................................................... 20 3 9 0.11 1 0 0 0 0 1
........................................AACAAGCCCAACTCCCTG................................................................................................................................................................................................. 18 2 12 0.08 1 0 0 0 1 0
........................................AACGACACCAGCTCCCTGTC............................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 0 1

Anti-sense strand reads

AGTGTGGAGCGCGGTCTAGAGCTAGTCGTCACTCGACGACTTGCTCGGGTCGAGGGACGGGGACCACCACCAGTATGGGTTATCGAGGCCACTTGTCTGAATGCTGCTATGGGGCGACACTCGGCCCATCCCCTCTGGACACGACCGGACACTAATTGGTTACCTCGAGACGTACCCACTTGGCCACAGGCCAGATAATAGGTATTAAATCATTGTATATATATCAGACTGTTTGGCATGGTAAAATTTTG
*************************************************************************...(((((((.((.((((((((.......))))).))).))..)))......................))))********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V055
head
 M058
embryo
 V105
male body		 V039
embryo
..............................................................................GTTATCGAGGCCACTTGTCTG........................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................CACCACTGGACACTAATTTGTT.......................................................................................... 22 3 1 1.00 1 0 0 1 0 0
...GTGGAGCGCGGTCTAGAGCTA................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...........CGGTCTAGAGCTAGTCGTCAC........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
............GGTCTAGAGCTAGTCGTCAC........................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0
........................................TGGCTCGGGTCGAGTGACGGA.............................................................................................................................................................................................. 21 3 2 0.50 1 0 1 0 0 0
............................................TTGGGTCGAGGGAAGGGGA............................................................................................................................................................................................ 19 2 2 0.50 1 0 1 0 0 0
..............................................................................................GTCGGAACGCTGCTATGGGG......................................................................................................................................... 20 2 2 0.50 1 0 0 0 1 0
........................................TTGGTCGATTCGAGGGACGGG.............................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0
........................................TTGGTCGACTCGAGGGACGGG.............................................................................................................................................................................................. 21 3 7 0.29 2 0 2 0 0 0
....................................................................................GAAGCCATTTGTGTGAATGC................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0
..TGAGGAGCGTGGTCTAGGGCT.................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0
......................................................................................................................................................................GGAACGTACCCACTTGGC................................................................... 18 2 5 0.20 1 0 0 1 0 0
......................................................................................................................................................................GGGACGTACCCACTTGGT................................................................... 18 2 5 0.20 1 0 0 1 0 0
..............................................................................................GTCGGAACGCTGCTAAGGGG......................................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0
..................................................................CCACCAGGATTGGTTCTCGA..................................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0
........................................TTGCACGAGTCGAGGGACGGT.............................................................................................................................................................................................. 21 3 8 0.13 1 0 1 0 0 0
.........................................................CGGGGACCACCACGGGAATG.............................................................................................................................................................................. 20 3 9 0.11 1 0 0 1 0 0
.................................................................................................TGAGTGCTGCCAAGGGGCG....................................................................................................................................... 19 3 9 0.11 1 0 1 0 0 0
...............................................................................................................GGGCGAGACTCGGCCCGTA......................................................................................................................... 19 3 10 0.10 1 0 1 0 0 0
....................................................................ACCACAAGGGGTTATCGAGG................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 1
...................................................................................................................................................................................CTGGCGACAGTCCAGATAA..................................................... 19 3 13 0.08 1 0 0 0 0 1
..............................................GGGTCGAGGCATGGGGA............................................................................................................................................................................................ 17 2 19 0.05 1 0 1 0 0 0
............................................................................GGGTTATCTAGGCCTGTTG............................................................................................................................................................ 19 3 19 0.05 1 0 0 0 1 0
.....................................................................CCACAAGGGGTTATCGAGG................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0
.......................................................................................ACCACTTGTCTGAATTCTA................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0
.........................................TGCTCGGGTGGTGGGACGGT.............................................................................................................................................................................................. 20 3 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:4997516-4997766 + dan_1791 TCAC------------AC------CTCGCGCCAGATCTCGATCAGCAGTGAGCTGCTGAACGAGCCCAG-----------CT-------C----CCTGCCCCTGGTGGTGGTCATACCCAATA---GCTCCGGTGA---------ACAGACTTACGACGATACCCCGCTGTGAGCCG-GGT-AGGGGAGA---CC---TGT----------------GCTGGCCTGTGATTA--ACC--AA-TGGAGCTCTGCATG-------------------GG--TGAAC-----CGGTGTCCGGTCTATTATCCATAATT-------T-----AGTA------------ACATA---TATATAGTCTGACAAA---CCGTACCATTTTAA-------------------------------------------AAC
droBip1 scf7180000395751:807498-807752 + CCGC------------AC------GTCGCGCCAGATCTCGATCAGCAGTGAGCTGCTGAGCGAGCCCAG-----------CT-------C----CCTGCCCCTGGTGGTGGTCATACCCAATA---CCTCCGGTGA---------ACAGACCTACGACGACACGCCGCTCTGAGCCAAC-CCGG---CCG---GGGAGGGAGAGGC-------GCTGGCTGGCCTGTGATTAA-CCA--AC-AGGAG--CTGCATG-------------------GGT--GAT-------------CGGTGTACCATCCATAACT-------T-----AAA--------AATAAACATA---TCTATAGTCTGACGAA---CCGAACCATTTTA--------------------------------------------AAC
droKik1 scf7180000302682:23546-23825 - TCATAATCA---TCGGGC------ATCGCGCCAGATATCAATAAGTAGCGAGCTGCTGAGCGAGAC-AG-CT------AGCAGCCTGC-C----CCTGCCCCTGGTGGTGGTCATACCCAATA---TCTCCGGCGA---------ACAGAGCTACGATGACACCAAGCTGTGAGAGG-AAT-TT--TCGGGGTGA---TCT------------------------GTGATTTA-CCC--AT-GAGAA--TTGCAAAAAAAAAA---AGAAAAC--GAATCAAGC-----CG---------------CGCTTAAGTATTAACTTTACTTAGTACAATACAA----ATATATATTTTATAGTCTGACAAA---CCCGACC----CA--------------------------------------------AGG
droFic1 scf7180000453811:73139-73379 - TCGG------------GC------GTCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGAACGAGTCCAG-----------CT-------C----CCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTACGACGACACCAAGCTGTGAGAGG----------------------ATGCACCCAT--------GCC----CAC------AACC--AA-TTAAG--CTGCATG-------------------GGAATGAGT-----CG---------------TACTTAACT-------------------------------------TTTAAAGTCTGACAAA---CTGAAA---------GCTGGACCAATGTCTGAGTCAAACGA-----TACCAGACCAAAAC
droEle1 scf7180000491232:179035-179239 - TCGG------------GC------ATCGCGCCAGGTCTCGATTAGCAGCGAGCTGATCAACGACTCCAG-----------TT-------G----CCTGCCCATGGTGGTGGTCATACCCAATG---CCTCTGGCGA---------GCAGGCCTACGACGACACCAAGCTGTGAGAGG-CCA-GTGACTCA--------------------------------------------AGT--GA-TCGGG--CTGCATG-------------------GGGTTGAGT-----CG---------------TACTTAACT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCAATTCG--------------------------------------------AAC
droRho1 scf7180000780265:174279-174503 - TCGG------------GC------ATCACGCCAAATCTCGATTAGCAGCGAGCTGCTGAACGAGCCCAG-----------TT-------C----CCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCTGGTGA---------ACAGGCCTACGACGACACCAAGCTGTGAAAGG-CCA-GTGACTCA---CG---GATGTACCTATGCA------------TAA------AACT--AA-TGTAG--CTGCATG-------------------GGGTTAAGA-----CG---------------TACTTAACT-------------------------------------TTTAAAGTCTGACAAA---CTGAAACAATTCG--------------------------------------------AAC
droBia1 scf7180000302143:1211232-1211455 - TCGG------------GC------ATCGCGCCAGATCTCGGTGAGCAGCGAGCTGCTGCACGAGTCCAG-----------CT-------C----CCTGCCCTTGGTGGTGGTCATACCCAATG---CCTCCGGCGA---------ACAGGCCTACGACGACACCAAGCTGTGAGGGC-CCC-ACAGCCCG---CG---GATGCACCCGCACAAC----------------------TGCATTCCTAG--CTGCATG-------------------GGGTTGTGT-----CG---------------TTCTTAACT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCAATTCG--------------------------------------------AAC
droTak1 scf7180000415722:84861-85091 + TCGG------------GC------CTCGCGCCAAATCTCGATTAGCAGCGAGCTGCTGCACGAGTCCAG-----------TT-------C----GCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGACCTACGACGACACCAAGCTGTGAGAGG-CCC-TCAAGCGG---CG---GATGTACC-------CTTTGCACCCCTAC------AACT--AATCCAAG--CTGCATG-------------------GGGTTGAGT-----CG---------------TTCTTAACT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTCG--------------------------------------------AAC
droEug1 scf7180000409474:746317-746537 - TCGG------------GC------ATCACGCCAGATCTCGATAAGCAGCGAGTTGCTGCACGAGTCCAG-----------TT-------C----CCTGCCAATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTATGACGACACCAAGCTGTGAGAGG-CCC-TTGAATCA---CG---GATGTACCTCTACGAC----------------------T--AA-TTAAG--CTGCATG-------------------GGGTTGAGT-----CG---------------TTCTTAAAT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTCG--------------------------------------------AAC
dm3 chr2R:17196382-17196602 + TCGG------------GC------ATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCAG-----------TT-------C----CTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------ACAGGCCTACGACGACACCAAGCTCTGAGAGG-CAT-GGGGCTAA---CG---ACTGCACTTGGACAAC----------------------T--AT-TAAAG--CTGCATG-------------------GGGTTGAGT-----CG---------------TACTTACAT-------------------------------------TTTAAAGTCTGACAAA---CTAAACCATTTTA--------------------------------------------ATG
droSim2 2r:17750717-17750937 + dsi_824 TCGG------------GC------ATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCAG-----------TT-------C----CTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------GCAGGCCTACGATGACACCAAGCTCTGAGTGG-CAT-GGGGCTAA---CG---ACTGCACTTGGACACC----------------------T--AT-TTAAG--CTGCATG-------------------GGGTTGAGT-----CG---------------TACTTACGT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTTG--------------------------------------------ATG
droSec2 scaffold_9:526164-526384 + TCGG------------GC------ATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCAG-----------TT-------C----CTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------ACAGGCCTACGACGACACTAAGCTCTGAGAGG-CAT-GGGGCTAA---CG---ACTGCACTTGGACAAC----------------------T--AT-TTAAG--GTGCATG-------------------GGGTTGAGT-----CG---------------TACTTACGT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTTG--------------------------------------------ATG
droYak3 2R:11991770-11991995 - TCGG------------GC------ATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCTAG-----------TT-------C----CTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCTGGCGA---------ACAGGCCTACGACGACACCAAGCTCTGAGAAG-CCA-GAGGCTCA---CG---AATGCACTTGGAAAAC------------T------TTGT--AT-TTAAG--CTGCATG-------------------AGGTTGAGT-----CG---------------TACTTGAAT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTTGG-------------------------------------------ATC
droEre2 scaffold_4845:11340198-11340422 + TCGG------------GC------ATCACGCCAGATCTCCATAAGCAGCGAGCTGCTGCACGAGTCCAG-----------TT-------C----CTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTATGACGACACCAAGCTCTAATTGG-CCA-GGGGCTCA---CA---TATGCACTTGGACAAC------------A------ATGT--AT-TTAAG--CTGCATG-------------------GGGTTGAGT-----CG---------------TACTTAAAT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTGG--------------------------------------------ATG
dp5 3:3665484-3665776 + TGCT------------GC------GGCACGACAAATCTCGATTAGCAGCGAGCGACTAACCGAACCCAG-----------CTCTCTGC-C----CCTGCCCCTGGTGGTGGTCATACCCAATGGCTCCTCGGGGGA---------GCAGCACTACGACGACACAAAGCTGTGAGATGTC-CAGTCTTTCCCGTCG---TCTGAAACTGA--AAC----------------------T--AT-GTAAA--GTGCATGTGAAGTATTACGGGAACTGGGATTGCGGGCTTTCT---------------AACTTAAC---------------------------------------CTATAGTCTGACAATGGGCAAAACCATTTTAAAATTGGACCAATT-----GTCAATGAATCCTGTAAGAGACCA---A
droPer2 scaffold_2:3855344-3855599 + TGCT------------GC------GGCACGACAAATCTCGATTAGCAGCGAGCGACTAACCGAACCCAG-----------CTCTCTGC-C----CCTGCCCCTGGTGGTGGTCATACCCAATGGCTCCTCGGGGGA---------GCAGCTCTACGACGACACAAAGCTGTGAGATGTC-CAGTCTTTCCCGTCG---TCTGAAACTGA--AAC----------------------T--AT-GTAAA--GTGCATGTGAAGTATTACGGGAACTGGGATTGCGGGCTTTCT---------------AACTTAAC---------------------------------------CTATAGTCTGACAATGGGCAAAACCATTTTA--------------------------------------------A-A
droWil2 scf2_1100000004513:950063-950200 - TCTC-------------C------TTCGCATCGTAATTCCCTAGGTGATGAATTCATAATCGAACCGAATCTTGGGGCATCGCCATATAT----AGTGCCCATGGTTGTGGTAGTACCAAATG---GCAATGGTGATGGTCATCATCATCCGTACAATGATACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:19028873-19029009 - ACAA------AGCTTGGC------TGCGCGTTCAGGTTCCATTGCTGATGAGCTGCTGATCGAGCCCAT---------GACGCCCTAT-ACAAAGGTGCCCATGGTGGTGGTGGTGCCCAACA---C------AGA---------TCAAATCTATGATGATACCAAATTATGAATCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:12712180-12712312 - TCAG---CATGGCTTGGCGCACGGTGCGCGTCCAAGGTCGATTGCCGATGAGCTGCTGATCGAACCCAT---------GACGCCCTAC-ACCCAGGTGCCAACGGTGGTGGTGATGCCCAAC------TCA---GA---------TAAGATTTACGATGATACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:5090317-5090456 - TAGTCAACATAGT---TT------AAAGCGTCCAACATCCATTGGTGATGAGCTCCTGATCGAGCCCAT---------GGCGGCATTT-ATGACGTTGCCAACGGTGGTGGTGGTGCCCAAC---------AGTGA---------TATAATCTATGACGATACCAAATTATAAACCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCAC------------AC------CTCGCGCCAGATCTCGATCAGCAGTGAGCTGCTGAACGAGCCCAG-----------CT-------C----CCTGCCCCTGGTGGTGGTCATACCCAATA---GCTCCGGTGA---------ACAGACTTACGACGATACCCCGCTGTGAGCCG-GGT-AGGGGAGA---CC---TGT----------------GCTGGCCTGTGATTA--ACC--AA-TGGAGCTCTGCATG-------------------GG--TGAAC-----CGGTGTCCGGTCTATTATCCATAATT-------T-----AGTA------------ACATA---TATATAGTCTGACAAA---CCGTACCATTTTAA-------------------------------------------AACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................C--AA-TGGAGCTCTGCATG-------------------GG--T.......................................................................................................................................................2012.002000002
..............................................................................................................................................................GATACCCCGCTGTGAGCCG-G............................................................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................AGCTCTGCATG-------------------GG--TGAAC-----CGG...........................................................................................................................................2111.001000001
...........................................................................................................................................................................................................................................................GCATG-------------------GG--TGAAC-----CGGTGTCC......................................................................................................................................2011.001000001
....................................................................................................................................................................................T-AGGGGAGA---CC---TGT----------------GCTGGCC...............................................................................................................................................................................................................2111.001000010
...................................................................................................................................................................................................................................GATTA--ACC--AA-TGGAGCTCTGC..................................................................................................................................................................................2111.001000010
......................................................................................................................................................................................................................................TA--ACC--AA-TGGAGCTCTGCATG-------------------............................................................................................................................................................2111.001100000
..................................................................................................................................................................................................................................................TGGAGCTCTGCATG-------------------GG--TGAAC-----..............................................................................................................................................2111.001000001
............................................................................................................TGGTCATACCCAATA---GCTCCG...........................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................ATG-------------------GG--TGAAC-----CGGTGTCCGGC...................................................................................................................................2111.001010000
.............................................................................................................................................................CGATACCCCGCTGTGAGCCG-G............................................................................................................................................................................................................................................................2111.001000010
............................................................................................................................................................................................................................................C--AA-TGGAGCTCTGCATG-------------------GG--........................................................................................................................................................1911.001100000
droBip1
CCGC------------AC------GTCGCGCCAGATCTCGATCAGCAGTGAGCTGCTGAGCGAGCCCAG-----------CT-------C----CCTGCCCCTGGTGGTGGTCATACCCAATA---CCTCCGGTGA---------ACAGACCTACGACGACACGCCGCTCTGAGCCAAC-CCGG---CCG---GGGAGGGAGAGGC-------GCTGGCTGGCCTGTGATTAA-CCA--AC-AGGAG--CTGCATG-------------------GGT--GAT-------------CGGTGTACCATCCATAACT-------T-----AAA--------AATAAACATA---TCTATAGTCTGACGAA---CCGAACCATTTTA--------------------------------------------AACSizeHit CountTotal NormTotal
No Reads
droKik1
TCATAATCA---TCGGGC------ATCGCGCCAGATATCAATAAGTAGCGAGCTGCTGAGCGAGAC-AG-CT------AGCAGCCTGC-C----CCTGCCCCTGGTGGTGGTCATACCCAATA---TCTCCGGCGA---------ACAGAGCTACGATGACACCAAGCTGTGAGAGG-AAT-TT--TCGGGGTGA---TCT------------------------GTGATTTA-CCC--AT-GAGAA--TTGCAAAAAAAAAA---AGAAAAC--GAATCAAGC-----CG---------------CGCTTAAGTATTAACTTTACTTAGTACAATACAA----ATATATATTTTATAGTCTGACAAA---CCCGACC----CA--------------------------------------------AGGSizeHit CountTotal NormTotal
No Reads
droFic1
TCGG------------GC------GTCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGAACGAGTCCAG-----------CT-------C----CCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTACGACGACACCAAGCTGTGAGAGG----------------------ATGCACCCAT--------GCC----CAC------AACC--AA-TTAAG--CTGCATG-------------------GGAATGAGT-----CG---------------TACTTAACT-------------------------------------TTTAAAGTCTGACAAA---CTGAAA---------GCTGGACCAATGTCTGAGTCAAACGA-----TACCAGACCAAAACSizeHit CountTotal NormTotal
No Reads
droEle1
TCGG------------GC------ATCGCGCCAGGTCTCGATTAGCAGCGAGCTGATCAACGACTCCAG-----------TT-------G----CCTGCCCATGGTGGTGGTCATACCCAATG---CCTCTGGCGA---------GCAGGCCTACGACGACACCAAGCTGTGAGAGG-CCA-GTGACTCA--------------------------------------------AGT--GA-TCGGG--CTGCATG-------------------GGGTTGAGT-----CG---------------TACTTAACT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCAATTCG--------------------------------------------AACSizeHit CountTotal NormTotal
No Reads
droRho1
TCGG------------GC------ATCACGCCAAATCTCGATTAGCAGCGAGCTGCTGAACGAGCCCAG-----------TT-------C----CCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCTGGTGA---------ACAGGCCTACGACGACACCAAGCTGTGAAAGG-CCA-GTGACTCA---CG---GATGTACCTATGCA------------TAA------AACT--AA-TGTAG--CTGCATG-------------------GGGTTAAGA-----CG---------------TACTTAACT-------------------------------------TTTAAAGTCTGACAAA---CTGAAACAATTCG--------------------------------------------AACSizeHit CountTotal NormTotal
No Reads
droBia1
TCGG------------GC------ATCGCGCCAGATCTCGGTGAGCAGCGAGCTGCTGCACGAGTCCAG-----------CT-------C----CCTGCCCTTGGTGGTGGTCATACCCAATG---CCTCCGGCGA---------ACAGGCCTACGACGACACCAAGCTGTGAGGGC-CCC-ACAGCCCG---CG---GATGCACCCGCACAAC----------------------TGCATTCCTAG--CTGCATG-------------------GGGTTGTGT-----CG---------------TTCTTAACT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCAATTCG--------------------------------------------AACSizeHit CountTotal NormTotal
No Reads
droTak1
TCGG------------GC------CTCGCGCCAAATCTCGATTAGCAGCGAGCTGCTGCACGAGTCCAG-----------TT-------C----GCTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGACCTACGACGACACCAAGCTGTGAGAGG-CCC-TCAAGCGG---CG---GATGTACC-------CTTTGCACCCCTAC------AACT--AATCCAAG--CTGCATG-------------------GGGTTGAGT-----CG---------------TTCTTAACT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTCG--------------------------------------------AACSizeHit CountTotal NormTotal
No Reads
droEug1
TCGG------------GC------ATCACGCCAGATCTCGATAAGCAGCGAGTTGCTGCACGAGTCCAG-----------TT-------C----CCTGCCAATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTATGACGACACCAAGCTGTGAGAGG-CCC-TTGAATCA---CG---GATGTACCTCTACGAC----------------------T--AA-TTAAG--CTGCATG-------------------GGGTTGAGT-----CG---------------TTCTTAAAT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTCG--------------------------------------------AACSizeHit CountTotal NormTotal
No Reads
dm3
TCGG------------GC------ATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCAG-----------TT-------C----CTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------ACAGGCCTACGACGACACCAAGCTCTGAGAGG-CAT-GGGGCTAA---CG---ACTGCACTTGGACAAC----------------------T--AT-TAAAG--CTGCATG-------------------GGGTTGAGT-----CG---------------TACTTACAT-------------------------------------TTTAAAGTCTGACAAA---CTAAACCATTTTA--------------------------------------------ATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................ATG-------------------GGGTTGAGT-----CG---------------TACTTAC......................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................AAGCTCTGAGAGG-CAT-GGGGC....................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000002000000000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................GCCCATGGTGGTGGT...............................................................................................................................................................................................................................................................................................................................1514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004
.......................................................................................................................AATG---CCTCGGGCGA---------ACAGGCCTAC....................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TGCATG-------------------GGGTTGAGT-----CG---------------TACT.........................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010010000
.......................................................................................................................................................CTACGACGACACCAAGCTCTG...................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................CTGCATG-------------------GGGTTGAGT-----CG---------------TACT.........................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000200000000000000000000000000
......................................................................................................................................................................GCTCTGAGAGG-CAT-GGGGCT...................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000
.....................................................................................................................................................................................................................C----------------------T--AT-TAAAG--CTGCATG-------------------GGGT........................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................ACTTACAT-------------------------------------TTTAAAGTCTGAC..................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TACGACGACACCAAGCTCTGAGAGG-CA...........................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................G-CAT-GGGGCTAA---CG---ACTGCAC..................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AC----------------------T--AT-TAAAG--CTGCATG-------------------GGGT........................................................................................................................................................2112.0020000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GGGGCTAA---CG---ACTGCACTTGGA.............................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TACGACGACACCAAGCTCTGAG.................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AG--CTGCATG-------------------GGGTTGAGT-----CG---------------TACT.........................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................CGAGCTGCTGCACGAGTCCAG-----------...............................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000
................................................................................................................................TCGGGCGA---------ACAGGCCTACGACGA...............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CGACACCAAGCTCTGAGAGG-.............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TT-------C----CTTGCCCATGGTGGTGGT...............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CAAGCTCTGAGAGG-CAT-GG.......................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................T-GGGGCTAA---CG---ACTGCACTT................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AGCTCTGAGAGG-CAT-GGGGCT...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................T--AT-TAAAG--CTGCATG-------------------GGG.........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................GAGAGG-CAT-GGGGCTAA---CG---AC.......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................ATCGCGCCAGATCTCGATAAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................................................CTGCACGAGTCCAG-----------TT-------C----CTTG.............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................CTTGGACAAC----------------------T--AT-TAAAG--CTG...................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TCTGACAAA---CTAAACCATTTTA--------------------------------------------A..2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................GGCTAA---CG---ACTGCACTTGGAC............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CGACACCAAGCTCTGAGA................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...G------------GC------ATCGCGCCAGATCTCGATAAGCAGCG.............................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................TACGACGACACCAAGCTCTGAGAGG-CAT-G........................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CCAG-----------TT-------C----CTTGCCCATGGTGG...................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TACGACGACACCAAGCTCTGAGAGG-.............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AAGTCTGACAAA---CTAAAC......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TAA---CG---ACTGCACTTGGACAAC----------------------...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................TCGATAAGCAGCGAGCTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................G--CTGCATG-------------------GGGTTGAGT-----C.............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................AAAG--CTGCATG-------------------GGGTTGAGT-----C.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................CTGAGAGG-CAT-GGGGCTT..................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................ACGACACCAAGCTCTGAGAGG-C............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GCCTACGACGACACCAAGCTCTGAGA................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................CTGCATG-------------------GGGTTGAGT-----CG---------------TA...........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TTGGACAAC----------------------T--AT-TAAAG--CTGC..................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................AAG--CTGCATG-------------------GGGTTGAGT-----C.............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................ACGAGTCCAG-----------TT-------C----CTTGCCC..........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CGACACCAAGCTCTGAGAGG-C............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TGGTGGTGGTCATTCCCAATG---.................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................TGCATG-------------------GGGTTGAGT-----CG---------------TACTTACA.....................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGG------------GC------ATCGCGCCAGATCTCGA......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................T-------C----CTTGCCCATGGTGGTGGTCATTC..........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CAGCGAGCTGCTGCACGAGTC.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................A---CG---ACTGCACTTGGACAAC----------------------T--................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CAATG---CCTCGGGCGA---------ACAGGC........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................C----CTTGCCCATGGTGGTGGTCA.............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GAGTCCAG-----------TT-------C----CTTGCCCATGGTG....................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AGCAGCGAGCTGCTGCACGAGTCCAG-----------...............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................GAGCTGCTGCACGAGTCC............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TACGACGACACCAAGCTCTGAGAGG-CAT-ATC......................................................................................................................................................................................................................................................3111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................C------ATCGCGCCAGATCTCGATA....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CGCCAGATCTCGATAAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................................CTTGGACAAC----------------------T--AT-TAAAG--CTGC..................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CGCGCCAGATCTCGATAAGC.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................................AAAG--CTGCATG-------------------GGGTTGAGT-----AT---------------C............................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GG------------GC------ATCGCGCCAGATCTCGATAAGC.................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TACAT-------------------------------------TTTAAAGTCTGACAAA---C...........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCGG------------GC------ATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCAG-----------TT-------C----CTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------GCAGGCCTACGATGACACCAAGCTCTGAGTGG-CAT-GGGGCTAA---CG---ACTGCACTTGGACACC----------------------T--AT-TTAAG--CTGCATG-------------------GGGTTGAGT-----CG---------------TACTTACGT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTTG--------------------------------------------ATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................TG-------------------GGGTTGAGT-----CG---------------TACTTACGT-------------------------------------TT.............................................................................2411.00100000010000000000
..............................CCAGATCTCGATAAGCAGCG.............................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
....................................................................................................................................................................AAGCTCTGAGTGG-CAT-GGGGC....................................................................................................................................................................................................................................................2111.00110000000000000000
..........................................................................................................................................................................................CTAA---CG---ACTGCACTTGGACACC----------------------T--................................................................................................................................................................................................2311.00100100000000000000
....................................................................................................................................................................................T-GGGGCTAA---CG---ACTGCACTTGGACAC..........................................................................................................................................................................................................................2611.00100000000000001000
..............................CCAGATCTCGATAAGCAGCGA............................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..........................................................................................................................................................................................CTAA---CG---ACTGCACTTGGACACC----------------------...................................................................................................................................................................................................2211.00101000000000000000
..............................................................................................................................................................GACACCAAGCTCTGAGTG...............................................................................................................................................................................................................................................................1811.00100000100000000000
.....................................................................................................................................................................................................................................................................................GTTGAGT-----CG---------------TACTTACGT-------------------------------------...............................................................................1811.00100000000001000000
...................................................................................................................................................................CAAGCTCTGAGTGG-CAT-GGG......................................................................................................................................................................................................................................................2011.00100000000000001000
.............................................................................................................GGTCATTCCCAATG---CCTCGGGC.........................................................................................................................................................................................................................................................................................................2211.00100100000000000000
...........................................................................................................................................................................................TAA---CG---ACTGCACTTGGACACC----------------------...................................................................................................................................................................................................2111.00100100000000000000
droSec2
TCGG------------GC------ATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCCAG-----------TT-------C----CTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCGGGCGA---------ACAGGCCTACGACGACACTAAGCTCTGAGAGG-CAT-GGGGCTAA---CG---ACTGCACTTGGACAAC----------------------T--AT-TTAAG--GTGCATG-------------------GGGTTGAGT-----CG---------------TACTTACGT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTTG--------------------------------------------ATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................CG---------------TACTTACGT-------------------------------------TTTAAAGTC......................................................................2011.0010010
......................................................................................................................................................CCTACGACGACACTAAGCTCT....................................................................................................................................................................................................................................................................2111.0010001
droYak3
TCGG------------GC------ATCGCGCCAGATCTCGATAAGCAGCGAGCTGCTGCACGAGTCTAG-----------TT-------C----CTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCTGGCGA---------ACAGGCCTACGACGACACCAAGCTCTGAGAAG-CCA-GAGGCTCA---CG---AATGCACTTGGAAAAC------------T------TTGT--AT-TTAAG--CTGCATG-------------------AGGTTGAGT-----CG---------------TACTTGAAT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTTGG-------------------------------------------ATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................ATTCCCAATG---CCTCTGGCGA---------ACA...........................................................................................................................................................................................................................................................................................2311.00101000000000
................................AGATCTCGATAAGCAGCGAGCT.........................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...........................................................................................................................................................................................................................................GT--AT-TTAAG--CTGCATG-------------------AGGTT.......................................................................................................................................................2111.00100000010000
.........................TCGCGCCAGATCTCGATAAGCAGCGAGC..........................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
.............................GCCAGATCTCGATAAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..........................................................................................................................................................................................................................................................................................GT-----CG---------------TACTTGAAT-------------------------------------TTTAAAGT.......................................................................2111.00100100000000
...........................................................................................................................................................................................................................................................GCATG-------------------AGGTTGAGT-----CG---------------TACTTGAAT-------------------------------------...............................................................................2511.00100000010000
.............................GCCAGATCTCGATAAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
....................................................................................................................................................GGCCTACGACGACACCAAGCTCT....................................................................................................................................................................................................................................................................2311.00101000000000
................................AGATCTCGATAAGCAGCGAGCTGCT......................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
........................................................TGCACGAGTCTAG-----------TT-------C----CTTGC............................................................................................................................................................................................................................................................................................................................................2111.00100001000000
................................................................................TT-------C----CTTGCCCATGGTGGTGGTCATTCC.........................................................................................................................................................................................................................................................................................................................2711.00101000000000
................................................................................................................................................................................................................................................T-TTAAG--CTGCATG-------------------AGGTTGAGT-----..............................................................................................................................................2211.00100000010000
droEre2
TCGG------------GC------ATCACGCCAGATCTCCATAAGCAGCGAGCTGCTGCACGAGTCCAG-----------TT-------C----CTTGCCCATGGTGGTGGTCATTCCCAATG---CCTCCGGCGA---------ACAGGCCTATGACGACACCAAGCTCTAATTGG-CCA-GGGGCTCA---CA---TATGCACTTGGACAAC------------A------ATGT--AT-TTAAG--CTGCATG-------------------GGGTTGAGT-----CG---------------TACTTAAAT-------------------------------------TTTAAAGTCTGACAAA---CTGAACCATTTGG--------------------------------------------ATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................TCCGGCGA---------ACAGGCCTATGACGACACCAA.........................................................................................................................................................................................................................................................................2914.0040000004
....................................................................................................................................................................................................................................................................................................................CTTAAAT-------------------------------------TTTAAAGTCTGACAAA---CT..........................................................2511.0010100000
........................ATCACGCCAGATCTCCATAAGC.................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.........................TCACGCCAGATCTCCATAAGC.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
..............................................................................................................................................................................................................................................................TG-------------------GGGTTGAGT-----CG---------------TACTTAAAT-------------------------------------T..............................................................................2311.0010100000
.........................................................GCACGAGTCCAG-----------TT-------C----CTTGCCCATG.......................................................................................................................................................................................................................................................................................................................................2511.0011000000
........................................................................................................................................................TATGACGACACCAAGCTCTAATTGG-CC...........................................................................................................................................................................................................................................................2711.0011000000
dp5
TGCT------------GC------GGCACGACAAATCTCGATTAGCAGCGAGCGACTAACCGAACCCAG-----------CTCTCTGC-C----CCTGCCCCTGGTGGTGGTCATACCCAATGGCTCCTCGGGGGA---------GCAGCACTACGACGACACAAAGCTGTGAGATGTC-CAGTCTTTCCCGTCG---TCTGAAACTGA--AAC----------------------T--AT-GTAAA--GTGCATGTGAAGTATTACGGGAACTGGGATTGCGGGCTTTCT---------------AACTTAAC---------------------------------------CTATAGTCTGACAATGGGCAAAACCATTTTAAAATTGGACCAATT-----GTCAATGAATCCTGTAAGAGACCA---ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................GCTTTCT---------------AACTTAAC---------------------------------------CTATAGTCTGACA.................................................................2811.0010100000000
.................C------GGCACGACAAATCTCGATTAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...........................................................................................................................................................................................................................................................................GGGAACTGGGATTGCGGGCTTTC.............................................................................................................................................2311.0010000001000
.......................................................................................C-C----CCTGCCCCTGGTGGTGGCT..............................................................................................................................................................................................................................................................................................................................2120.5010100000000
droPer2
TGCT------------GC------GGCACGACAAATCTCGATTAGCAGCGAGCGACTAACCGAACCCAG-----------CTCTCTGC-C----CCTGCCCCTGGTGGTGGTCATACCCAATGGCTCCTCGGGGGA---------GCAGCTCTACGACGACACAAAGCTGTGAGATGTC-CAGTCTTTCCCGTCG---TCTGAAACTGA--AAC----------------------T--AT-GTAAA--GTGCATGTGAAGTATTACGGGAACTGGGATTGCGGGCTTTCT---------------AACTTAAC---------------------------------------CTATAGTCTGACAATGGGCAAAACCATTTTA--------------------------------------------A-ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................GAGATGTC-CAGTCTTTCCCGTCG---TCT......................................................................................................................................................................................................................................2612.002200000
.......................................................................................................................................................................................................................................................................................................................AAC---------------------------------------CTATAGTCTGACAAT...............................................................1811.001100000
.............................................................................................................................................................................................................................................................................................CTTTCT---------------AACTTAAC---------------------------------------CTATAGTCTGAC..................................................................2611.001100000
............................................................................................................................................................................................CCCGTCG---TCTGAAACTGA--A...........................................................................................................................................................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................ACTGGGATTGCGGGCTTTCT---------------AACT.........................................................................................................................2411.001100000
.....................................................................................................................................................................................................................................................................................ATTGCGGGCTTTCT---------------AACTTAAC---------------------------------------CT............................................................................2411.001100000
droWil2
TCTC-------------C------TTCGCATCGTAATTCCCTAGGTGATGAATTCATAATCGAACCGAATCTTGGGGCATCGCCATATAT----AGTGCCCATGGTTGTGGTAGTACCAAATG---GCAATGGTGATGGTCATCATCATCCGTACAATGATACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................TAATCGAACCGAATCTTGGGG..................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
ACAA------AGCTTGGC------TGCGCGTTCAGGTTCCATTGCTGATGAGCTGCTGATCGAGCCCAT---------GACGCCCTAT-ACAAAGGTGCCCATGGTGGTGGTGGTGCCCAACA---C------AGA---------TCAAATCTATGATGATACCAAATTATGAATCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................CTGATGAGCTGCTGATCGAGC..............................................................................................................................................................................................................................................................................................................................................................................2116.006302000000000000000000000000000000000000000000000000000000000010
.......................................................CTGATCGAGCCCAT---------GACGCCC..........................................................................................................................................................................................................................................................................................................................................................2114.004120000000000000000000000000000000000000000000000000000000000010
.............TTGGC------TGCGCGTTCAGGTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................2113.003000001000000000000000000000000000100000000000000000000000000010
..AA------AGCTTGGC------TGCGCGTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000000100000000000010000000000000000000000000000000000000010
...................................GTTCCATTGCTGATGAGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................2113.003100000000000000000000000000000000100000000000000000000000000010
...........................................GCTGATGAGCTGCTGATCGAG...............................................................................................................................................................................................................................................................................................................................................................................2113.003000000000000000000000000000001000000000000000000000000000000020
.....................................................TGCTGATCGAGCCCAT---------GACGC............................................................................................................................................................................................................................................................................................................................................................2113.003100000000000000000000000000000000100000000000000000000000000010
........................................ATTGCTGATGAGCTGCTGATT..................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000010000000000000000000000000000000000000000000000
....................................TTCCATTGCTGATGAGCTGCT......................................................................................................................................................................................................................................................................................................................................................................................2112.002000001000000000000000000000000000000000000000000000000000000010
.......................................................................................T-ACAAAGGTGCCCATGGTGG...................................................................................................................................................................................................................................................................................................................................2012.002002000000000000000000000000000000000000000000000000000000000000
ACAA------AGCTTGGC------TGCGCGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000000000000000000000100000000000000000000000000000
.............................................TGATGAGCTGCTGATCGAGCC.............................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000100000000000000000000000000010
..............................................GATGAGCTGCTGATCGAGCCC............................................................................................................................................................................................................................................................................................................................................................................2112.002000000100000000000000000000000000000000000000000000000001000000
............................................CTGATGAGCTGCTGATCG.................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000200000000000000000000000000000000000000000000000000000
................................................TGAGCTGCTGATCGAGCCCAT---------.................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000001000000000000000000000000000000010
.............................................TGATGAGCTGCTGATCGAG...............................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000020
...............................TCAGGTTCCATTGCTGATGAGCTGCT......................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
........................................ATTGCTGATGAGCTGCTGATC..................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
..................................................AGCTGCTGATCGAGCCCAT---------G................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
..............................TTCAGGTTCCATTGCTGATGA............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.................................AGGTTCCATTGCTGATGAGCT.........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
.....................................TCCATTGCTGATGAGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
....................................TTCCATTGCTGATGAGCTGCTT.....................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................CAAAGGTGCCCATGGTGGTGG................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................AT-ACAAAGGTGCCCATGGC.....................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
...........................GCGTTCAGGTTCCATTGCTGA...............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...............................................ATGAGCTGCTGATCGAGC..............................................................................................................................................................................................................................................................................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
...............................................................................................GTGCCCATGGTGGTGGTGGTGCCCAAC.....................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................................TGAGCTGCTGATCGAGCCCAT---------G................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................ACA---C------AGA---------TCAAATCTATGATG................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................TGCGCGTTCAGGTTCCATTGC..................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................CTGATCGAGCCCAT---------GACGC............................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
.........................................TTGCTGATGAGCTGCTGATCG.................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................TGCTGATGAGCTGCTGATCGA................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
......................................................GCTGATCGAGCCCAT---------GAC..............................................................................................................................................................................................................................................................................................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................CA---C------AGA---------TCAAATCTATGATGA...............................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...................................GTTCCATTGCTGATGAGCTG........................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
.........................................................GATCGAGCCCAT---------GACGCCCTAT-......................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
..............................................GATGAGCTGCTGATCGAGT..............................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................CTGCTGATCGAGCCCAT---------GACGCCCT.........................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
............................................CTGATGAGCTGCTGATCGAGCT.............................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..........................................TGCTGATGAGCTGCTGATCGT................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................TGCTGATGAGCTGCTGATCT.................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................GGTTCCATTGCTGATGAGCT.........................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..AA------AGCTTGGC------TGCGCGTTCAT............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
....................................TTCCATTGCTGATGAGCTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
...............................TCAGGTTCCATTGCTGATGAG...........................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................ATGAGCTGCTGATCGAGCCC............................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
...A------AGCTTGGC------TGCGCGTTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................................TGATGAGCTGCTGATCGAGC..............................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
...............................................................GCCCAT---------GACGCCCTAT-ACAAAGGT..............................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCAG---CATGGCTTGGCGCACGGTGCGCGTCCAAGGTCGATTGCCGATGAGCTGCTGATCGAACCCAT---------GACGCCCTAC-ACCCAGGTGCCAACGGTGGTGGTGATGCCCAAC------TCA---GA---------TAAGATTTACGATGATACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................GATTGCCGATGAGCTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...............................................ATGAGCTGCTGATCGAACCCAT---------.................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
TAGTCAACATAGT---TT------AAAGCGTCCAACATCCATTGGTGATGAGCTCCTGATCGAGCCCAT---------GGCGGCATTT-ATGACGTTGCCAACGGTGGTGGTGGTGCCCAAC---------AGTGA---------TATAATCTATGACGATACCAAATTATAAACCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:57 AM