ID:

dan_179

 Coordinate:

scaffold_13117:2147812-2147880 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.0 -39.9 -39.8

Flybase annnotation

Antisense to intron [Dana\GF20989-in]

Repeatable elements

NameClassFamilyStrand
(TGG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12903:626569-626591 +
  2. scaffold_12911:3551774-3551796 +
  3. dan_302  scaffold_12916:16118731-16118753 +
  4. scaffold_13088:467179-467201 +
  5. scaffold_13117:919504-919526 +
  6. dan_179  scaffold_13117:2147856-2147878 +
  7. scaffold_13117:2853883-2853905 +
  8. scaffold_13117:4657303-4657325 +
  9. scaffold_13117:5181825-5181847 +
  10. scaffold_13248:840140-840162 +
  11. scaffold_13266:2327656-2327678 +
  12. scaffold_13266:9766024-9766046 +
  13. scaffold_13266:15276315-15276337 +
  14. scaffold_13335:785177-785199 +
  15. scaffold_13335:1181497-1181519 +
  16. scaffold_13337:15993416-15993438 +
  17. scaffold_13340:19851151-19851173 +
star

Sense Strand Reads

TGTCCTTCGATTTCGATGCTGTTCAGTGATGCTGATGCTGATGGTGGTGCCGCTTGAAACGGCGCTGCTTCTTTTGGCCTCCGATGGAGGTGCAGGTGGTGGTGGTGGTGGTGGTGGTGTTGCTGTTGGTGGTGCAGGATGAGGATGACGAGTTTGACTTTGTCTTGGA
***********************************.((((((((((((((((((.....((.(((((((.(((...((((((...))))))..))).))))))).)).....))))))))))))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V055
head
 V105
male body		 M058
embryo
 V039
embryo
 M044
female body
..............................................................................................GGTGGTGGTGGTGGTGGTGGTGG.................................................... 23 0 20 3.20 64 64 0 0 0 0 0
...............................................................................................GTGGTGGTGGTGGTGGTGGTGGTG.................................................. 24 0 20 1.25 25 24 0 1 0 0 0
.......................................................................TTTTGGCCTCCGGGGGAGGT.............................................................................. 20 2 1 1.00 1 0 1 0 0 0 0
.......................................................................TTTTGGCCTCCGCTGGAAGT.............................................................................. 20 2 1 1.00 1 0 1 0 0 0 0
..............GATGCTGTTCAGTGATGCT........................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0
...............................................................................................GTGGTGGTGGTGGTGGTGGTGG.................................................... 22 0 20 0.95 19 19 0 0 0 0 0
...............................................................................................GTGGTGGTGGTGGTGGTGGTGGTGT................................................. 25 0 4 0.75 3 2 0 1 0 0 0
............................................................................................CAGGTGGTGGTGGTGGTGGTGGTGGG................................................... 26 1 6 0.67 4 4 0 0 0 0 0
......................................................................CTTTTGGGCTCCGGTGGA................................................................................. 18 2 6 0.50 3 0 1 0 0 2 0
...............................................................................................GTGGTGGTGGTGGTGGTGGTGGTGTT................................................ 26 0 2 0.50 1 1 0 0 0 0 0
..........................................GGTGGTCCCGCTTGGAAGGGC.......................................................................................................... 21 3 4 0.50 2 1 0 1 0 0 0
..............................................................................................GGTGGTGGTGGTGGTGGTGGTGGTGT................................................. 26 0 4 0.50 2 1 0 1 0 0 0
..............................................................................................GGTGGTGGTGGTGGTGGTGG....................................................... 20 0 20 0.45 9 9 0 0 0 0 0
..............................................................................................GGTGGTGGTGGTGGTGGTGGTGGT................................................... 24 0 20 0.35 7 0 0 6 0 0 1
...................................................GCTTGAAACGGAGCTGCTCC.................................................................................................. 20 2 3 0.33 1 0 0 0 1 0 0
.................................................................................................GGTGGTGGTGGTGGTGGTGGTGT................................................. 23 0 11 0.27 3 3 0 0 0 0 0
.......................................................................TTTTGGGCTCCGGGGGAGGT.............................................................................. 20 3 11 0.27 3 0 3 0 0 0 0
....................................................................................TGGAGGTGCCGGTGGTGGTAGT............................................................... 22 2 4 0.25 1 0 0 0 0 0 1
.................................................................................................GGTGGTGGTGGTGGTGGTGGTG.................................................. 22 0 20 0.25 5 5 0 0 0 0 0
................................................................................................TGGTGGTGGTGGTGGTGGTGGTGTTG............................................... 26 0 4 0.25 1 0 0 1 0 0 0
......................................................................CTTTTGGCCTCCGACCGA................................................................................. 18 2 5 0.20 1 0 1 0 0 0 0
.......................................................................TTTTGGCCTCCGGCGGAGG............................................................................... 19 2 5 0.20 1 0 1 0 0 0 0
.............................................................................................AGGTGGTGGTGGTGGTGGTGGTGG.................................................... 24 0 5 0.20 1 1 0 0 0 0 0
......................................................................CTTTTGGGCTCCGAGGGA................................................................................. 18 2 6 0.17 1 0 1 0 0 0 0
..............................................................................................................................TAGTGGTGCAGGGTGAGGGTG...................... 21 3 6 0.17 1 0 1 0 0 0 0
...............................................................................................GTGGTGGTGGTGGTGGTGGGGGTGT................................................. 25 1 7 0.14 1 1 0 0 0 0 0
......................................................................CTTTTGGTCTCCGGTGGA................................................................................. 18 2 8 0.13 1 0 0 0 0 1 0
...............................................................................................GTGGTGGTGGTGGTGGTGGTTGTGT................................................. 25 1 9 0.11 1 1 0 0 0 0 0
..................................................................................................GTGGTGGTGGTGGTGGTGGTGT................................................. 22 0 18 0.11 2 2 0 0 0 0 0
................................................................................................TGGTGGTGGTGGTGGTGGTGGTGT................................................. 24 0 9 0.11 1 1 0 0 0 0 0
.................................................................................................GGTGGTGGTGGTGGTGGTGGTGTTC............................................... 25 1 10 0.10 1 1 0 0 0 0 0
.......................................................................TTTTGGGCTCCGGTGGA................................................................................. 17 2 20 0.10 2 0 2 0 0 0 0
..................................................................................................GCGGTGGTGGTGGTGGTGGTGT................................................. 22 1 20 0.10 2 2 0 0 0 0 0
.............................................................................................AGGGGGTGGTGGTGGTGGTGGTGGT................................................... 25 1 10 0.10 1 1 0 0 0 0 0
.......................................................................TTTTGGCCTCCGGGGGAAGT.............................................................................. 20 3 10 0.10 1 0 1 0 0 0 0
..............................................................................................GGTGGTGGTGGTTGTGGTGGTGGT................................................... 24 1 20 0.10 2 2 0 0 0 0 0
..............................................................................................GGTGGTGGTGGTGGTGGTGGTGGTTT................................................. 26 1 11 0.09 1 1 0 0 0 0 0
.......................................................................................AGGTGCGGGTGGTGGTGG................................................................ 18 1 12 0.08 1 1 0 0 0 0 0
........................................................................................GCTGCAGGTGGTGGTGGTGGT............................................................ 21 1 13 0.08 1 1 0 0 0 0 0
.................................................................................................GGTGGTGGTGGTGGTGGTGGGGTT................................................ 24 1 13 0.08 1 1 0 0 0 0 0
....................................................................AGCTTTTGGACTCCGATGGA................................................................................. 20 3 14 0.07 1 0 0 0 0 1 0
.............................................................................................AGTTGGTGGTGGTGGTGGTGGTGGT................................................... 25 1 15 0.07 1 1 0 0 0 0 0
..............................................................................................................................CGGTGGTGCTGGATGCGGATG...................... 21 3 16 0.06 1 0 0 0 0 0 1
.......................................................................TTTTGGCCTCCGACGGC................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0
...............................................................................................GTGGTGTTGGTGGTGGTGGTGGTG.................................................. 24 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................GGTGGTGGTGGTGGTTGTGGTGGTG.................................................. 25 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................GTGGTGGTGGTGGTGGTGGTGGT................................................... 23 0 20 0.05 1 0 0 0 0 0 1
....................................................................................................GGTGGTGGTGGTGGTGGTGT................................................. 20 0 20 0.05 1 1 0 0 0 0 0
......................................................................CTTTTGGCCTCCGGGGG.................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0
........................................................................TTTGGGCTCCGGTGGACGT.............................................................................. 19 3 20 0.05 1 0 1 0 0 0 0
...............................................................................................GTGGTGGTGGAGGTGGTGGTGGTG.................................................. 24 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................GGTGGTGGTGGTGGTGGTGGTGGTG.................................................. 25 0 20 0.05 1 0 0 0 0 0 1
..............................................................................................GGTGGTGGTGGTGGTGGGGGTGGTG.................................................. 25 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................GTGGTGGCGGTGGTGGTGGTGGTG.................................................. 24 1 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

ACAGGAAGCTAAAGCTACGACAAGTCACTACGACTACGACTACCACCACGGCGAACTTTGCCGCGACGAAGAAAACCGGAGGCTACCTCCACGTCCACCACCACCACCACCACCACCACAACGACAACCACCACGTCCTACTCCTACTGCTCAAACTGAAACAGAACCT
***********************************.((((((((((((((((((.....((.(((((((.(((...((((((...))))))..))).))))))).)).....))))))))))))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 M044
female body
 V039
embryo
 V055
head
..............CTACGACAAGTCACTACGACTAC.................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0
..........AAAGCTACGACAAGTCACTACGACT...................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
..................................................................CGAAGAAAACCGGAGGCTA.................................................................................... 19 0 1 1.00 1 1 0 0 0 0
............AGCTACGACAAGTCACTACGACTA..................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0
..........................................CCACCACGGCGAACTTTGCCGCGTCTA.................................................................................................... 27 2 1 1.00 1 1 0 0 0 0
....................................CGACTACCACCACGGCGAACTTTTC............................................................................................................ 25 1 1 1.00 1 1 0 0 0 0
...............................................................................AGGCTACCTCCACGTCCAC....................................................................... 19 0 1 1.00 1 0 0 0 1 0
........................................................................................................................................CCTACTCCTACTGCTCAAACTGAA......... 24 0 1 1.00 1 0 0 1 0 0
.......GCTAAAGCTACGACAAGTCACTACGA........................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0
ACAGGAAGCTAAAGCTACTACAAGTCA.............................................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0
.......................................................................................................................................TCCTACTCCTACTGCTCAAAC............. 21 0 1 1.00 1 1 0 0 0 0
...................................................................................................................CCACAACGACAACCACCAC................................... 19 0 2 1.00 2 2 0 0 0 0
ACAGGAAGCTAAAGCTACGACAAG................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
.....................................................................................CCTCCACGTCCACCACCACCACC............................................................. 23 0 1 1.00 1 1 0 0 0 0
.......GCTAACGCTACGACAAGTCACTACGA........................................................................................................................................ 26 1 1 1.00 1 0 1 0 0 0
...........................................................................CCGGAGGCTACCTCCACGTCCACCAC.................................................................... 26 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................CCACCACGTCCTACTCCTACTGCTCAAAC............. 29 0 1 1.00 1 1 0 0 0 0
..........................................CCACCACGGCGAACTTTGCCGCGACGAAGA................................................................................................. 30 0 1 1.00 1 0 1 0 0 0
........................TCACTACGACTACGACTAC.............................................................................................................................. 19 0 2 0.50 1 1 0 0 0 0
..............................................................................................................CACCACCACAACGACAAGCA....................................... 20 1 2 0.50 1 0 0 0 1 0
............................................................................................................................................CTCGTACTGGTCAAACTG........... 18 2 3 0.33 1 0 0 0 0 1
.................................................GGAGAAATTTGCCTCGACGA.................................................................................................... 20 3 9 0.22 2 0 2 0 0 0
...........................................................................................................................ACAACCACCACATCCCACTC.......................... 20 2 5 0.20 1 1 0 0 0 0
.....................................................................................................................................CGTCGTACTCGTACGGCTCA................ 20 3 6 0.17 1 0 0 0 0 1
......................................ACCACCACCACGGCGAAATAT.............................................................................................................. 21 3 6 0.17 1 1 0 0 0 0
...................................................................................................................CCATAGCGACAACCACTACGT................................. 21 3 8 0.13 1 1 0 0 0 0
.........................................ACCACCACGGCGAACTTGTT............................................................................................................ 20 3 9 0.11 1 1 0 0 0 0
................................................CGGCGATCTTTGACGCGAG...................................................................................................... 19 3 13 0.08 1 0 0 0 0 1
...........................................................................................................CACGACCACCACAACGACAA.......................................... 20 1 13 0.08 1 1 0 0 0 0
.............................................................................................................CCACCACCACAGCGACAAT......................................... 19 2 15 0.07 1 1 0 0 0 0
..............................................................................................................CACCACCACAACGAAATCCAA...................................... 21 3 15 0.07 1 1 0 0 0 0
..........................................................................................................................GACAACCACCACGATCTA............................. 18 2 19 0.05 1 0 0 0 1 0
......................................................................................................ACCACCACCAACACCAAAAAGAC............................................ 23 3 20 0.05 1 0 0 0 1 0
..........................................CCACCCCGGCGAACTCAG............................................................................................................. 18 3 20 0.05 1 1 0 0 0 0
......................................................................................................ACCACCCCCCCCACCAGAACG.............................................. 21 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13117:2147762-2147930 + dan_179 TGTC-------------------------CTTCGATTTCGATGCTGTTCAG-TGAT--G---C---------TG---ATG------CT---------------------------GATGGTGGT---GCC------GCTTGAAACGGCGCTGCTTCTTT---TGGCCTCCGATGG----------------------------------------------------------------------------------------AGGTGCAGG----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------GT------------------------------TGCTGTTGGTGGTGCA-----------------------------------------------------------------------------------------------------------GGATGAGGATGACGAGTTTGACTT---TGTCTTGG--A
droBip1 scf7180000394524:5320-5471 - TGTC-------------------------CTTGGTTTTCG-----GTTCAG-TGAT--G---C---------TG---ATG------CT---------------------------GATGCTGGT---GCC------GCTTGAAACGGCGCTGCTTCTTT---TGGGCTCCGGCGG----------------------------------------------------------------------------------------AGATGCAGG----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------GG------------------------------------------TGCA-----------------------------------------------------------------------------------------------------------GGATGAGGATGACGAGTTCGACTT---CGTCTTAG--A
droKik1 scf7180000302471:168143-168293 - TGTT-------------------------CAGCGGACTCG-GACTGTTCAGTTGAGCCA---C---------CA---ATG------CG---------------------------GAC-TTGTA---GCC------CTTGGAATTGCTGCTGCTGCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCCGCCGCTCGAGTTGGAGTGATGGTGGTGGTGGTGATGATGTTTCCCCGAGGAAGAG--GA------------------------CGA------TGAGGAG--GA----------------------------------------CG--A
droFic1 scf7180000453800:321601-321773 - TGTT-------------------------GCACC-------------GCTG-C----------A----GAGCCGTTGTT-GTTGCC--GC---------------------------CGTTACT---GGTGGAGCAACTTGAGCCAGT--TGCT----------GCTGCCATGGCT-------------------------------------------------------------------------------GA------TGATGATGG----------------------------------------------TGGTGGTGGTGGTGGTAGTAGC-------------------AG------------TGGTGGGTCAAGGCAAGTCGCCGATGTTG----------------------------------------------TTGTGGAGTAG--------------------------------------------------------------GAAG------TTGAAGT---TGGTTTTG--T
droEle1 scf7180000491006:1428905-1429056 + TGCT---------CTTGCAAGCCGTTGTCCAACGTG---------GTCCTT-G----------G----TTGCTGGCGCC------------------TTGTC---------------------------------------------CGCCGCTTCGAT---TGGCCGCCGGTGGTGGAGGATGATGAGGTGGTGGTTGTGGTTGTGGTTGAGATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCATCGCCATTGCCATTGCCATTGCCATTGA-------------------------------------------------------------C
droRho1 scf7180000777035:24669-24812 - GATG-------------------------TTG-C-------TGCTGTGC-A-TGCT--G---CTGT------TG---TTG-------------------------------------------------------------------------------------CTGCTGGTGGTGTTG-CTGCTGAGGCT---------------------------------------------------------------GCTGCTGCTGTTGCTGCTGCTGC----------------------------------------TG----------------------------------------------------------------------------------------------------------------------------------------TTGTTGTTGCTGCTGCTGCTGTTGTTGTTGCTGG------TGTGTA------------TGATGCGGGTGAAGCGT--------------ATGG--C
droBia1 scf7180000301623:241368-241550 - TTCTGCTGCTGCTCCTGCAAGCCGTCGTCCAACGTG---------GTCCAT-G-----------------GCTGGCGCT------------------TGGAT---------------------------------------------CGCCGTTTCGAT---TGCCCGCCGCAGGTGCTGGCG------------GTGG--ATGAT--------------GATGAGGT---------------------------GG------TGCTGGTGG----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------GG------------TGG---------------TGGATGAGGTG------------------------------------------------------ATGCCGT------------------------TGACGCTAAT------GC---------------------------------CCC------GGTTG
droTak1 scf7180000415289:446613-446776 - TGGG-------------------------ATG-A---------------------T--GCGGA------TGCTG------------CTGC---------------------------ATGTGGT----------------G-----------CAGCG-------------G----------------------------------------------------------------------------C---GGATGGTGGTGCGGATGCTGGTGCGGATGCTGCTGCTGATGAT-GGTGTGGCGGCATATGCGGATTATGGTGGTTGTTGTGATGATGGT-------------------GG------------------------------TTGTTGTGGTGATGCG-----------------------------------------------------------------------------------------------------------GCATCGGTCCGCCGGGTCC------------------G
droEug1 scf7180000407253:686407-686560 - TCTT-------------------------CTTCGTA---------TTGTTG-T----------T----AT--------T--------------------------------------------------------------------------------------------------GTTCAGAATGCGATTGTGGTGATGATGATGGTGGCGCTG-------------------------------GTGCGGCTGATGGTGATGGTGCGGC----------------------------------------------TGGTGGTGGCTGCGCCGCTGGT-------------------------------------CA---AACAACTGCTGCTGCTGTTGTTGCT-----------------------------------------------------------------------------------------------------------GCATCAGTTTGGCCAA-----------------CT--T
dm3 chrX:7934861-7934988 + TGTC-------------------------CAACGTG---------GTGCGG-T----------G----GTACTGACGCC------------------TTGTC---------------------------------------------CGCCGCTTCGAT---TGGCCGCCGGAGGTGATGGTGGATGAGGTGGTGGTTGTAGTGGTTGTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCGT------------------------TGACGCTAAT------GC---------------------------------CCC------GGTTG
droSim2 x:7507556-7507683 + TGTC-------------------------CAACGTG---------GTGCGG-T----------G----GTACTGACGCC------------------TTGTC---------------------------------------------CGCCGCTTCGAT---TGGCCGCCGGAGGTGATGGTGGATGAGGTGGTGGTTGTAGTGGTTGTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCGT------------------------TGACGCTAAT------GC---------------------------------CCC------GGTTG
droSec2 scaffold_44:18955-19082 + TGTC-------------------------CAACGTG---------GTGCGG-T----------G----GTACTGACGCC------------------TTGTC---------------------------------------------CGCCGCTTCGAT---TGGCCGCCGGAGGTGATGGTGGATGAGGTGGTGGTTTTAGTGGTTGTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCGT------------------------TGACGCTAAT------GC---------------------------------CCC------GGTTG
droYak3 2L:1476098-1476265 + TGTTGTTGCTG------------------TTG-C-------TGATGTGG-A-TGCT--G---C---------TG---ATG------CT---------------------------GATGTTGCT---GCT------GCTGATGTTGATGTTGCTGCT-------------G----------------------------------------------------------------------------C---TGATGTTGCTGCTGATGCTGCTGCTGATGTTGCTGCTGCTGCT-GCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTGC------------------------TGATGCTGATGTTGC------------TGCTGCTGCTGAGGGGT------C---TGTCTCTG--T
droEre2 scaffold_4770:14947070-14947195 + TGGT-------------------------TCTGGTG---------ATT--------------------GTGCTGCTGCT-GCTGCT--GA---------------T---------GCTG---CTGATGATG------ATGA-------------------------TGCCGGTGGTGCTG-------------------------------------------------------------------CTTCAGGCGA------TGGTGATGG----------------------------------------------TGGTGATGGTGGTGGTGGTGGT-------------------GG------------------------------TGCTGGTGGTG---------------------------------------------------------------------------------------G------T------------------------------------------------GCGA--G
dp5 4_group4:3046817-3046992 + CCTC-------------------------CGAAATT---------CTTCTG-C--T--G---CTGTTGTTGCTGCTGCT------------------GCTGC---------------------T---GCTGCTGCAACTTGT--TGGTGTTGATCGGTTGAGTGGACTTGGGTGG----------------------------------------------------------------------------------------TGGTGGAGG----------------------------------------------GGGTCCTAGGGGCGGAGGTGGT-------------------GG------------------------------------------------------------------------------------------------CGCTGC------------------------CAA---------------GGCGTTGCTAAATCCGGGCGGCGCGTTCGACGAACTTATCGTTG--A
droPer2 scaffold_26:660528-660664 - TGTT-------------------------CGCTGC--------------------T--G---C---------TG---TAG------CTGA---------------------------AAGTGTT----------------G---------------GGT---TGGCTGCTG------CTGATGTGCTGGG-------------------------------------------------------------------------TGGTGATTG----------------------------------------------TGGTGATTGTGGTGCTTC----------------------------------------------------------TGTTGCTG----------------------------------------------CTGTGGTGCTGGAGG------------------------CGG------TGCTAAA--GC-------------------TGCACTCGACTT---TCGCT-TG--G
droWil2 scf2_1100000004909:6024846-6025000 - TGTT-------------------------GTTGC--------------------------------------TGCTGCT------------------GCTGCTGCTGCTGTTGTTGATGTTGC-------------------------------------------TGTTGGAGGTGGAAATG-------------------------------------GTGGGGATGGTGTTGTTGGTGGTGCTGCTGCAATTGCTGG---TGATGTTGG----------------------------------------------TGGTGGTGGTGGTG----------------------------------------------------------------------------------------------------------------------------CTGCTGT---TGCTGCTGCTGCTGATGATGATGG------------------------------------------------------------TG
droVir3 scaffold_13002:1109-1273 + CATT-------------------------CCTTGAT----------------------G---T---------TG---TTG------TTGCTGCTGCTGCTGCTGCT---------GCTG---CTGCTGCTG------CTGC-------------------------TGCCAAACTT-----------------------------------------------------------------------------------------------------------------------------------------ATTCACGCTGCCTTCTGTGATGCGAACGACGTTTGTGCGCGTGCGATCTGCTGGCAGCGCTGCTCGATTTG------------------------------------------------------------------------------------------------------------------GAGGA--GT-------------------TGCTTTTGCTTTT--CGTTTTGG--T
droMoj3 scaffold_6540:8710345-8710492 - TATT-------------------------GCTGA---------------------T--G---C---------TG---TTG------CTGC---------------------------TGCTGCT---GCTGG--------GCAACGCAG---CT--------------------------------TTGGCTGTTGT-------------------TGAT-----TTAGTTGCTGCCGCTGCAGCTGCAGCTGTTGCT------------GG----------------------TGGTGCTGG---------------TGGAG------------GTGGT-------------------------------------------------------------------------------------------------------------------------GG------------------------TGG------TGGTGAA--GA-------------------TGCTGGTACAAC---TGGTTTGA--C
droGri2 scaffold_15203:7100870-7101021 + TGTT-------------------------GCACGGCTTGT-CGTCGCCTAGCTGAT--G---T---------TG---TTG------CCGT---------------------------TGTTGTT---GTC------GCT---ATTGTTGTTGTTA-----------------------------------------------TTGTTGCA---------------------------GCTGCTGCTGCTGCTGCTGCT------------GC----------------------CACCGCTGC---------TGA---TG---------------ATGAT-------------------------------------------------------------------------------------------------------------------------GA------------------------TGA------CGATGAA--GA-------------------TGTTATTAGATT---TGTCTTGA--A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TGTC-------------------------CTTCGATTTCGATGCTGTTCAG-TGAT--G---C---------TG---ATG------CT---------------------------GATGGTGGT---GCC------GCTTGAAACGGCGCTGCTTCTTT---TGGCCTCCGATGG----------------------------------------------------------------------------------------AGGTGCAGG----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------GT------------------------------TGCTGTTGGTGGTGCA-----------------------------------------------------------------------------------------------------------GGATGAGGATGACGAGTTTGACTT---TGTCTTGG--ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................GG----------------------------------------------TGGTGGTGGTGGTGGTGGTGG.....................................................................................................................................................................................................................23203.20640000064
...............................................................................................................................................................................................................................................................................G----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------G................................................................................................................................................................................................24201.25250000124
.......................................GATGCTGTTCAG-TGAT--G---C---------T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............................................................................................................................................................................................................................................................................G----------------------------------------------TGGTGGTGGTGGTGGTGGTGG.....................................................................................................................................................................................................................22200.95190000019
...............................................................................................................................................................................................................................................................................G----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------GT------------------------------.................................................................................................................................................................2540.753000012
............................................................................................................................................................................................................................................................................CAGG----------------------------------------------TGGTGGTGGTGGTGGTGGTGGG-------------------.................................................................................................................................................................................................2660.674000004
...............................................................................................................................................................................................................................................................................G----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------GT------------------------------T................................................................................................................................................................2620.501000001
..............................................................................................................................................................................................................................................................................GG----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------GT------------------------------.................................................................................................................................................................2640.502000011
..............................................................................................................................................................................................................................................................................GG----------------------------------------------TGGTGGTGGTGGTGGTGG........................................................................................................................................................................................................................20200.459000009
..............................................................................................................................................................................................................................................................................GG----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------.................................................................................................................................................................................................24200.357100060
...............................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGTGGTGGTGGT-------------------GT------------------------------.................................................................................................................................................................23110.273000003
...............................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGTGGTGGTGGT-------------------G................................................................................................................................................................................................22200.255000005
..............................................................................................................................................................................................................................................................................................................................TGGTGGTGGTGGTGGTGGTGGT-------------------GT------------------------------TG...............................................................................................................................................................2640.251000010
.............................................................................................................................................................................................................................................................................AGG----------------------------------------------TGGTGGTGGTGGTGGTGGTGG.....................................................................................................................................................................................................................2450.201000001
................................................................................................................................................................................................................................................................................................................................GTGGTGGTGGTGGTGGTGGT-------------------GT------------------------------.................................................................................................................................................................22180.112000002
..............................................................................................................................................................................................................................................................................................................................TGGTGGTGGTGGTGGTGGTGGT-------------------GT------------------------------.................................................................................................................................................................2490.111000001
...............................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGTGGTGGTGGT-------------------GT------------------------------TC...............................................................................................................................................................25100.101000001
...............................................................................................................................................................................................................................................................................G----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------.................................................................................................................................................................................................23200.051100000
..................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGTGGTGGT-------------------GT------------------------------.................................................................................................................................................................20200.051000001
..............................................................................................................................................................................................................................................................................GG----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------G................................................................................................................................................................................................25200.051100000
droBip1
TGTC-------------------------CTTGGTTTTCG-----GTTCAG-TGAT--G---C---------TG---ATG------CT---------------------------GATGCTGGT---GCC------GCTTGAAACGGCGCTGCTTCTTT---TGGGCTCCGGCGG----------------------------------------------------------------------------------------AGATGCAGG----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------GG------------------------------------------TGCA-----------------------------------------------------------------------------------------------------------GGATGAGGATGACGAGTTCGACTT---CGTCTTAG--ASizeHit CountTotal NormTotal
No Reads
droKik1
TGTT-------------------------CAGCGGACTCG-GACTGTTCAGTTGAGCCA---C---------CA---ATG------CG---------------------------GAC-TTGTA---GCC------CTTGGAATTGCTGCTGCTGCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCCGCCGCTCGAGTTGGAGTGATGGTGGTGGTGGTGATGATGTTTCCCCGAGGAAGAG--GA------------------------CGA------TGAGGAG--GA----------------------------------------CG--ASizeHit CountTotal NormTotal
No Reads
droFic1
TGTT-------------------------GCACC-------------GCTG-C----------A----GAGCCGTTGTT-GTTGCC--GC---------------------------CGTTACT---GGTGGAGCAACTTGAGCCAGT--TGCT----------GCTGCCATGGCT-------------------------------------------------------------------------------GA------TGATGATGG----------------------------------------------TGGTGGTGGTGGTGGTAGTAGC-------------------AG------------TGGTGGGTCAAGGCAAGTCGCCGATGTTG----------------------------------------------TTGTGGAGTAG--------------------------------------------------------------GAAG------TTGAAGT---TGGTTTTG--TSizeHit CountTotal NormTotal
No Reads
droEle1
TGCT---------CTTGCAAGCCGTTGTCCAACGTG---------GTCCTT-G----------G----TTGCTGGCGCC------------------TTGTC---------------------------------------------CGCCGCTTCGAT---TGGCCGCCGGTGGTGGAGGATGATGAGGTGGTGGTTGTGGTTGTGGTTGAGATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCATCGCCATTGCCATTGCCATTGCCATTGA-------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droRho1
GATG-------------------------TTG-C-------TGCTGTGC-A-TGCT--G---CTGT------TG---TTG-------------------------------------------------------------------------------------CTGCTGGTGGTGTTG-CTGCTGAGGCT---------------------------------------------------------------GCTGCTGCTGTTGCTGCTGCTGC----------------------------------------TG----------------------------------------------------------------------------------------------------------------------------------------TTGTTGTTGCTGCTGCTGCTGTTGTTGTTGCTGG------TGTGTA------------TGATGCGGGTGAAGCGT--------------ATGG--CSizeHit CountTotal NormTotal
No Reads
droBia1
TTCTGCTGCTGCTCCTGCAAGCCGTCGTCCAACGTG---------GTCCAT-G-----------------GCTGGCGCT------------------TGGAT---------------------------------------------CGCCGTTTCGAT---TGCCCGCCGCAGGTGCTGGCG------------GTGG--ATGAT--------------GATGAGGT---------------------------GG------TGCTGGTGG----------------------------------------------TGGTGGTGGTGGTGGTGGTGGT-------------------GG------------TGG---------------TGGATGAGGTG------------------------------------------------------ATGCCGT------------------------TGACGCTAAT------GC---------------------------------CCC------GGTTGSizeHit CountTotal NormTotal
No Reads
droTak1
TGGG-------------------------ATG-A---------------------T--GCGGA------TGCTG------------CTGC---------------------------ATGTGGT----------------G-----------CAGCG-------------G----------------------------------------------------------------------------C---GGATGGTGGTGCGGATGCTGGTGCGGATGCTGCTGCTGATGAT-GGTGTGGCGGCATATGCGGATTATGGTGGTTGTTGTGATGATGGT-------------------GG------------------------------TTGTTGTGGTGATGCG-----------------------------------------------------------------------------------------------------------GCATCGGTCCGCCGGGTCC------------------GSizeHit CountTotal NormTotal
No Reads
droEug1
TCTT-------------------------CTTCGTA---------TTGTTG-T----------T----AT--------T--------------------------------------------------------------------------------------------------GTTCAGAATGCGATTGTGGTGATGATGATGGTGGCGCTG-------------------------------GTGCGGCTGATGGTGATGGTGCGGC----------------------------------------------TGGTGGTGGCTGCGCCGCTGGT-------------------------------------CA---AACAACTGCTGCTGCTGTTGTTGCT-----------------------------------------------------------------------------------------------------------GCATCAGTTTGGCCAA-----------------CT--TSizeHit CountTotal NormTotal
No Reads
dm3
TGTC-------------------------CAACGTG---------GTGCGG-T----------G----GTACTGACGCC------------------TTGTC---------------------------------------------CGCCGCTTCGAT---TGGCCGCCGGAGGTGATGGTGGATGAGGTGGTGGTTGTAGTGGTTGTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCGT------------------------TGACGCTAAT------GC---------------------------------CCC------GGTTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................TGAGGTGGTGGTTGTATA.............................................................................................................................................................................................................................................................................................................................................................1894.444000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000820519140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TGATGGTGGATGAGGTGGTGG....................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000
....................................................................................................................................................................................................TTGTAGTGGTTGTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A...............................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000010000000
..................................................................................................................................................................................TGGTGGATGAGGTGGTGGTTG.................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
..TC-------------------------CAACGTG---------GTGCGG-T----------G----GTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................AT---TGGCCGCCGGAGGTGATGG...................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
.....................................................................TACTGACGCC------------------TTGTC---------------------------------------------CGCCG................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................CAACGTG---------GTGCGG-T----------G----GTACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...............................................................................................................................................................................TGATGGTGGATGAGGTGGTT.....................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................TAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCGT------------------------TGACGCT..........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................................................................................................................................................TTCGAT---TGGCCGCCGGAGGTGATG....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................CGAT---TGGCCGCCGGAGGTGAT.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................................................................................................................................................T---TGGCCGCCGGAGGTGATGGT..................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................CC------------------TTGTC---------------------------------------------CGCCGCTTCGAT---TG....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................GCTTCGAT---TGGCCGCCGGAGG.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
TGTC-------------------------CAACGTG---------GTGCGG-T----------G----GTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................GGAGGTGATGGTGGATGAGGG.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................CGCC------------------TTGTC---------------------------------------------CGCCGCTTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................CGGAGGTGATGGTGGATGAGG..........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................................................................................AGGTGGTGGTTGTAGTGGT..........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................AGTGGTTGTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCC...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................................................................................................................................................................................................TGTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCGT------------------------TGAC.............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
......................................................................................................................................................CGCTTCGAT---TGGCCGCCGGAG..........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................CGCC------------------TTGTC---------------------------------------------CGCCGCTTCGAT---TGGCCGC...............................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CGCCGGAGGTGATGGTGGATG.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................AT---TGGCCGCCGGAGGTGATGGT..................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................GTGGTTGTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCG..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT------------------------TGACGCTAAT------GC---------------------------------CCC------GGT..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCGT------------------------TGACGCTAAT------GC---------------------------------CT............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AGGTGGTGGTTGTAGTGGTTG........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................................ATGAGGTGGTGGTTGTAGTGG...........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................................................................................................................................................................................................TGTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCGT------------------------TG...............................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGT------------------------TGACGCTAAT------GC---------------------------------C.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................GGTGGTTGTAGTGGTTGTAGT....................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TGAGGTGGTGGTTGTATG.............................................................................................................................................................................................................................................................................................................................................................18170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................ATGAGGTGGTGGTTGTGT..............................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGTC-------------------------CAACGTG---------GTGCGG-T----------G----GTACTGACGCC------------------TTGTC---------------------------------------------CGCCGCTTCGAT---TGGCCGCCGGAGGTGATGGTGGATGAGGTGGTGGTTGTAGTGGTTGTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCGT------------------------TGACGCTAAT------GC---------------------------------CCC------GGTTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................GTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCGT------------------------T................................................................1711.00100000000001000000
.........................................................................................................................................................TTCGAT---TGGCCGCCGGAGGTGATGGT..................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
droSec2
TGTC-------------------------CAACGTG---------GTGCGG-T----------G----GTACTGACGCC------------------TTGTC---------------------------------------------CGCCGCTTCGAT---TGGCCGCCGGAGGTGATGGTGGATGAGGTGGTGGTTTTAGTGGTTGTAGTGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCCGT------------------------TGACGCTAAT------GC---------------------------------CCC------GGTTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................GATGGTGGATGAGGTGGTGGT...................................................................................................................................................................................................................................................................................................................................................................2111.0010001
droYak3
TGTTGTTGCTG------------------TTG-C-------TGATGTGG-A-TGCT--G---C---------TG---ATG------CT---------------------------GATGTTGCT---GCT------GCTGATGTTGATGTTGCTGCT-------------G----------------------------------------------------------------------------C---TGATGTTGCTGCTGATGCTGCTGCTGATGTTGCTGCTGCTGCT-GCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTGC------------------------TGATGCTGATGTTGC------------TGCTGCTGCTGAGGGGT------C---TGTCTCTG--TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................TGCTGATGTTGCTGCTGCT.....................................................................................................................................................................................................................................................................19200.05100100000000
..............................................................................TG------CT---------------------------GATGTTGCT---GCT------GCT.............................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGATGTTGC------------TGCTGCT...............................19200.05100100000000
droEre2
TGGT-------------------------TCTGGTG---------ATT--------------------GTGCTGCTGCT-GCTGCT--GA---------------T---------GCTG---CTGATGATG------ATGA-------------------------TGCCGGTGGTGCTG-------------------------------------------------------------------CTTCAGGCGA------TGGTGATGG----------------------------------------------TGGTGATGGTGGTGGTGGTGGT-------------------GG------------------------------TGCTGGTGGTG---------------------------------------------------------------------------------------G------T------------------------------------------------GCGA--GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................TGGTGGTGGT-------------------GG------------------------------TGCTGG...........................................................................................................................................................18200.0510000010
dp5
CCTC-------------------------CGAAATT---------CTTCTG-C--T--G---CTGTTGTTGCTGCTGCT------------------GCTGC---------------------T---GCTGCTGCAACTTGT--TGGTGTTGATCGGTTGAGTGGACTTGGGTGG----------------------------------------------------------------------------------------TGGTGGAGG----------------------------------------------GGGTCCTAGGGGCGGAGGTGGT-------------------GG------------------------------------------------------------------------------------------------CGCTGC------------------------CAA---------------GGCGTTGCTAAATCCGGGCGGCGCGTTCGACGAACTTATCGTTG--ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................TTGGGTGG----------------------------------------------------------------------------------------TGGTGGAGG----------------------------------------------GGG.......................................................................................................................................................................................................................................2011.0010000001000
..............................................................CTGTTGTTGCTGCTGCT------------------GCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
....................................................C--T--G---CTGTTGTTGCTGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
TGTT-------------------------CGCTGC--------------------T--G---C---------TG---TAG------CTGA---------------------------AAGTGTT----------------G---------------GGT---TGGCTGCTG------CTGATGTGCTGGG-------------------------------------------------------------------------TGGTGATTG----------------------------------------------TGGTGATTGTGGTGCTTC----------------------------------------------------------TGTTGCTG----------------------------------------------CTGTGGTGCTGGAGG------------------------CGG------TGCTAAA--GC-------------------TGCACTCGACTT---TCGCT-TG--GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGTT-------------------------GTTGC--------------------------------------TGCTGCT------------------GCTGCTGCTGCTGTTGTTGATGTTGC-------------------------------------------TGTTGGAGGTGGAAATG-------------------------------------GTGGGGATGGTGTTGTTGGTGGTGCTGCTGCAATTGCTGG---TGATGTTGG----------------------------------------------TGGTGGTGGTGGTG----------------------------------------------------------------------------------------------------------------------------CTGCTGT---TGCTGCTGCTGCTGATGATGATGG------------------------------------------------------------TGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CATT-------------------------CCTTGAT----------------------G---T---------TG---TTG------TTGCTGCTGCTGCTGCTGCT---------GCTG---CTGCTGCTG------CTGC-------------------------TGCCAAACTT-----------------------------------------------------------------------------------------------------------------------------------------ATTCACGCTGCCTTCTGTGATGCGAACGACGTTTGTGCGCGTGCGATCTGCTGGCAGCGCTGCTCGATTTG------------------------------------------------------------------------------------------------------------------GAGGA--GT-------------------TGCTTTTGCTTTT--CGTTTTGG--TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................GCTG---CTGCTGCTG------CTGC-------------------------TGCCAAA...........................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
..............................................................................TG------TTGCTGCTGCTGCTGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TATT-------------------------GCTGA---------------------T--G---C---------TG---TTG------CTGC---------------------------TGCTGCT---GCTGG--------GCAACGCAG---CT--------------------------------TTGGCTGTTGT-------------------TGAT-----TTAGTTGCTGCCGCTGCAGCTGCAGCTGTTGCT------------GG----------------------TGGTGCTGG---------------TGGAG------------GTGGT-------------------------------------------------------------------------------------------------------------------------GG------------------------TGG------TGGTGAA--GA-------------------TGCTGGTACAAC---TGGTTTGA--CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGTT-------------------------GCACGGCTTGT-CGTCGCCTAGCTGAT--G---T---------TG---TTG------CCGT---------------------------TGTTGTT---GTC------GCT---ATTGTTGTTGTTA-----------------------------------------------TTGTTGCA---------------------------GCTGCTGCTGCTGCTGCTGCT------------GC----------------------CACCGCTGC---------TGA---TG---------------ATGAT-------------------------------------------------------------------------------------------------------------------------GA------------------------TGA------CGATGAA--GA-------------------TGTTATTAGATT---TGTCTTGA--ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/15/2015 at 02:57 PM