ID:

dan_1788

 Coordinate:

scaffold_13266:4889178-4889328 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.1 -31.1 -31.1

Flybase annnotation

exon [dana_GLEANR_12127:2]; CDS [Dana\GF12116-cds]; intron [Dana\GF12116-in]

Repeatable elements

NameClassFamilyStrand
Hoana8DNAhAT-hobo+
mature
  1. scaffold_12586:373910-373935 +
  2. scaffold_12911:1801087-1801112 +
  3. scaffold_12929:2863616-2863641 +
  4. scaffold_12943:407621-407646 +
  5. scaffold_12943:2318863-2318888 +
  6. scaffold_12943:2321711-2321736 +
  7. scaffold_12944:43642-43667 +
  8. scaffold_12984:664087-664112 +
  9. scaffold_13077:469620-469645 +
  10. scaffold_13082:3004321-3004346 +
  11. scaffold_13099:2680856-2680881 +
  12. scaffold_13099:3136058-3136083 +
  13. scaffold_13228:459443-459468 +
  14. scaffold_13250:2156301-2156326 +
  15. scaffold_13260:84950-84975 +
  16. scaffold_13280:1373127-1373152 +
  17. scaffold_13333:181469-181494 +
  18. scaffold_13340:21916586-21916611 +
  19. scaffold_13417:3233214-3233239 +
  20. scaffold_13417:3740611-3740636 +
  21. scaffold_12916:4961288-4961313 -
  22. scaffold_12916:10016721-10016746 -
  23. scaffold_12943:2087910-2087935 -
  24. scaffold_12948:462862-462887 -
  25. scaffold_12966:145056-145081 -
  26. scaffold_13077:89866-89891 -
  27. scaffold_13079:61360-61385 -
  28. scaffold_13082:1832620-1832645 -
  29. scaffold_13137:1199435-1199460 -
  30. scaffold_13137:1251973-1251998 -
  31. scaffold_13190:7288-7313 -
  32. scaffold_13250:414105-414130 -
  33. scaffold_13250:414837-414862 -
  34. scaffold_13250:1972066-1972091 -
  35. dan_1788  scaffold_13266:4889279-4889304 -
  36. scaffold_13272:2187-2212 -
  37. scaffold_13333:21357-21382 -
  38. scaffold_13339:361123-361148 -
  39. scaffold_13499:1253101-1253126 -
  40. scaffold_13767:1378745-1378770 -
star
  1. scaffold_12380:9616-9640 +
  2. scaffold_12586:232594-232618 +
  3. scaffold_12933:110130-110154 +
  4. scaffold_12944:205800-205824 +
  5. scaffold_13034:189293-189317 +
  6. scaffold_13077:145932-145956 +
  7. scaffold_13082:3511814-3511838 +
  8. scaffold_13111:1033620-1033644 +
  9. scaffold_13165:205485-205509 +
  10. scaffold_13165:398843-398867 +
  11. scaffold_13181:75032-75056 +
  12. scaffold_13230:2167483-2167507 +
  13. scaffold_13260:713487-713511 +
  14. scaffold_13266:19160628-19160652 +
  15. scaffold_13280:1419223-1419247 +
  16. scaffold_13335:2983007-2983031 +
  17. scaffold_13340:10719626-10719650 +
  18. scaffold_13417:5808698-5808722 +
  19. scaffold_13417:6665143-6665167 +
  20. scaffold_13767:1668827-1668851 +
  21. scaffold_254:39-63 -
  22. scaffold_4956:4977-5001 -
  23. scaffold_9071:9527-9551 -
  24. scaffold_12389:11756-11780 -
  25. scaffold_12948:462767-462791 -
  26. scaffold_13077:243312-243336 -
  27. scaffold_13082:1054406-1054430 -
  28. scaffold_13137:688968-688992 -
  29. scaffold_13260:1210612-1210636 -
  30. dan_1788  scaffold_13266:4889184-4889208 -
  31. scaffold_13276:51277-51301 -
  32. scaffold_13277:34758-34782 -
  33. scaffold_13337:12004399-12004423 -
  34. scaffold_13339:876941-876965 -
  35. scaffold_13339:877850-877874 -
  36. scaffold_13339:3879186-3879210 -
  37. scaffold_13417:3345429-3345453 -
  38. scaffold_13417:4512296-4512320 -
  39. scaffold_13417:6096975-6096999 -
  40. scaffold_13770:471860-471884 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCAGAAGTTCCTCGATGGAGCCACTCACGGAGCCATCTACTTTAGTTTGGGTAAGATATAGTGATTTGAAAGTATTTAAAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTTATATACCCTTGCAGTTGAGTTGCAGTCCGCTAGGTGGCGCCACGCATCTTATATTATTAGATATATAGCGGATCGTATATAGTCGGCCGATCCTTATGAAATTTGGCATATCGAATTATTTTGCCAAAAGAG
**************************************************************************.............(((......((((((((......)))))))).......)))(((((.....)))))((((((((((((........)))).((((((....))))))))))))))...******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body		 V106
head
..........................................................................TTTAAAACAAGAAAGGAAAGCTAACT....................................................................................................................................................... 26 0 20 0.45 9 9 0 0 0 0
...............................................................................................................................................................................................................GATCCTTATGAAATTTGGCATA...................... 22 0 20 0.10 2 2 0 0 0 0
..............................................GTGGGTAAGACAGAGTGAT.......................................................................................................................................................................................... 19 3 12 0.08 1 0 0 1 0 0
......GTTCCCCGATGGAACCACC.................................................................................................................................................................................................................................. 19 3 18 0.06 1 1 0 0 0 0
..........................................................................................................................................................................TATTATTAGATATATAGCGGATCGT........................................................ 25 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................TAGCGGATCGTATATAGTCGGCC............................................ 23 0 20 0.05 1 0 1 0 0 0
...............................................................................................................................TTGCAGTTGAGTTGCAGTCCGCTAG................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
.........................................................................ATTTAAAACAAGAAAGGAAAGCTAACC....................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
.................................................................................................................AAGTTTATATACCCTTGCAGT..................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0
.................................................................................................................................GCAGTTGAGTTGCAGTCCGCTAGGT................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................TGAGTTGCAGTCCGCCAGG.................................................................................................. 19 1 20 0.05 1 0 0 0 0 1
.................................................................................................................................................................................................GTATATAGTCGGCCGATCCTTATGAAA............................... 27 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................CTTGCAGTTGAGTTGCAGTCCGC...................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................TGAGTTGCAGTCCGCTAGGTGGC.............................................................................................. 23 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

AGTCTTCAAGGAGCTACCTCGGTGAGTGCCTCGGTAGATGAAATCAAACCCATTCTATATCACTAAACTTTCATAAATTTTGTTCTTTCCTTTCGATTGAAGCCCGCCTCGGCTTCAAATATATGGGAACGTCAACTCAACGTCAGGCGATCCACCGCGGTGCGTAGAATATAATAATCTATATATCGCCTAGCATATATCAGCCGGCTAGGAATACTTTAAACCGTATAGCTTAATAAAACGGTTTTCTC
********************************************************.............(((......((((((((......)))))))).......)))(((((.....)))))((((((((((((........)))).((((((....))))))))))))))...************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V106
head
 V055
head
 V105
male body
.......................................................................................................................................................................................TATCGCCTAGCATATATCAGC............................................... 21 0 20 0.75 15 15 0 0 0 0
.............................................................................................................CGGCTTCAAATATATGGGAACGT....................................................................................................................... 23 0 20 0.35 7 7 0 0 0 0
........................................................................................CCTTTCGATTGAAGCCCGCCTCGGCT......................................................................................................................................... 26 0 20 0.30 6 0 6 0 0 0
...............................................................TAAACTTTCATAAATGTCG......................................................................................................................................................................... 19 2 4 0.25 1 0 0 1 0 0
...................................................................................................................................................................................................TATATCAGCCGGCTAGGAATACT................................. 23 0 20 0.20 4 4 0 0 0 0
...............................................................................................................GCTTCAAATATATGGGAACGTCAACT.................................................................................................................. 26 0 20 0.15 3 3 0 0 0 0
..............................................................................TTTGTTCTTTCCTTTCGATTG........................................................................................................................................................ 21 0 20 0.15 3 3 0 0 0 0
..............................................................................................................................................TCAGGCGATCCACCGCGGTGCGTAGA................................................................................... 26 0 20 0.15 3 0 3 0 0 0
..................................................................................................................TCAAATATATGGGAACGTCAACTC................................................................................................................. 24 0 20 0.10 2 0 2 0 0 0
..............................................................................................................................GAACGTCAACTCAACGTCAGGCGAT.................................................................................................... 25 0 20 0.10 2 1 1 0 0 0
....................................................................................................................................................................................................ATATCAGCCGGCTAGGAATACTT................................ 23 0 20 0.10 2 0 2 0 0 0
...................................................................................................................................TCAACTCAACGTCAGGCGATCCA................................................................................................. 23 0 20 0.10 2 2 0 0 0 0
........................................................................ATAAATTTTGTTCTTTCCTTTCGATGG........................................................................................................................................................ 27 1 17 0.06 1 0 1 0 0 0
........................................................................ATAAATTTTGTTCTTTCCTTTCGATTG........................................................................................................................................................ 27 0 17 0.06 1 0 1 0 0 0
..............................................................................................................................................TCAGGCGATCCACCGCGGTGCGTAG.................................................................................... 25 0 20 0.05 1 1 0 0 0 0
..........................................................................AAATTTTGTTCTTTCCTTTCGATTG........................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................TGCGTAGAATATAATAATCTATA.................................................................... 23 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................CGTCAACTCAACGTCAGGCGATCCA................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................CAACGTCAGGCGATCCACCGCGGT.......................................................................................... 24 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................CAACTCAACGTCAGGCGATCCAC................................................................................................ 23 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................TCTATATATCGCCTAGCATATAT................................................... 23 0 20 0.05 1 1 0 0 0 0
.....................................................................................................GCCCGCCTCGGCTTCAAATATATG.............................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
............................................................................................................................GGGAACGTCAACTCAACGTCAG......................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
...........................................................................AATTTTGTTCTTTCCTTTCGATTGAAGC.................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................CCACCGCGGTGCGTAGAATATAATAATC........................................................................ 28 0 20 0.05 1 0 0 1 0 0
....................................................................................................................................CAACTCAACGTCAGGCGATCCA................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................GCCGGCTAGGAATACTTTAAACCGT........................ 25 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................ATCTATATATCGCCTAGCATA...................................................... 21 0 20 0.05 1 0 0 0 1 0
....................................................................................................AGCCCGCCTCGGCTTCAAAT................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................AGCCGGCTAGGAATACTTTAAACCGTAT...................... 28 0 20 0.05 1 1 0 0 0 0
.............................................................................................................CGGCTTCAAATATATGGGAA.......................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................GGAACGTCAACTCAACGTCAGGCGAT.................................................................................................... 26 0 20 0.05 1 0 0 0 0 1
.........................................................................TAAATTTTGTTCTTTCCTTTCGATTG........................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0
..........................................................................................................................ATGGGAACGTCAACTCAACGTCAGGCG...................................................................................................... 27 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:4889128-4889378 - dan_1788 T-CAGAAGTTCCTCGATGGAGC-----CACT---------CACGG--------------AG------CCATC-TA---CTTTAGTTTGGGTAAGATAT--A------------GTGAT-TTGA---AA-GTATTTAAAACAAG-AAAG--GAAAG-CTAACTTCGGGCGGAGCCGAAGTTTATATACCCTTGCAGTTGAGTT---------------GCAGTCCGCTAGGTGGCGC-----CACGCATCTTATA---TTATTAGATATA---TAGC--GG-------------------------------------------------------------------------------------------------------------------------------------------ATCGTATATAGTCGGCCGATCCTTATGAAATTTGG----CATATCGAA---------TTATTTTGCCAAAAGAG
droBip1 scf7180000395643:14654-14876 + TGCAGAAACGCTTGGATGAAAC-----TTAA---------GAAGTGACTGTTTCTGTCT--TCA--------------GTTGAGTCTTGCCAACTCTT------------------G-T---CA--TTTAAAGCAAAAACAAG-AAAG--GAAAG-CTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTAAAAC--------C----------------------G-----------------------------GATATA---TATCGCAAAC-----------------------------------------------------------------------------------------------------------------------------------------ATCGGATATAGTTGGCCGATCCTTACAAAATTTTG----CATGTCGTA---------TTATTTTGCCAAAAATA
droKik1 scf7180000299830:14272-14493 + T-TC-------CGCGATGGACC-----AACC---------ACCGA--GAATTA------TG------GCCAT-TA---CATGTGTCCGGGTAAGAAAA--AA---------------C-AT-AA--AT-AAATCAAAAACAAG-AAAG--G-AAG-CTAACTTCGGC--ACGCCGAAGTTTGTATACCCTTGCAAATGGGTT--------T----------------------TCA-----TA-----TTTATA---TCAAAAATTATA---A--TGCCGAA-------------------------------------------------------------------------------------------------------------------------------------------AACAGACACTAAACAGAGTTTCATAACATTTTA----CCTAT--AC---------TTATTATGTTTACAGTT
droFic1 scf7180000453273:29794-30071 + T-CTGAAACTCCTCGATCATAT-----GACG---------CATTT--------------CA------ATACC-CG---CTAATGTTTTGGCAAGGAGA---A-GATG-----------GAT-AC--TTTAATATTAAAACAAG-AAAG--G-AAG-CTAGCTTCGGC--AAGCCGAAGCTTATATACCCTTACAGTCACTAAATATGTCG----------------------------------------AACA----AAATA--------------CA-------TAAA-------------------------------------AG--C--------------TAAACAGCATCGAAGCTATGACAATTTTTCTATTAATTTT-----------CCAAATTGTTCATATGACAGCTATATGATATAGTCGTCCGATTTTGATGAAATTTAAATCAAGACTCA----------------------TTAGAA
droEle1 scf7180000490970:671043-671232 - T-CAGAAGTTTCTA--TGGGTG-----TAAC---------GAAGTTAGAGTTTA----T--TGAG--TAAAG-TA---TT-------------------TTA-T-T----------G-TCTAGA--TTT-AAAATAAAACAAG-AAAG--A-AAG-CAAACTTCGGC--AAGCCGAAGTTCATATACCCTTGCAGCTATTGCAAGAATTT----------------------------------------AACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGAAAACATTAAAATTATGATTTA-C------TGCGTATATGTTT--AAAAA
droRho1 scf7180000779182:146679-146981 - C-CGGCGGCGCCTCGAAGAAAA-----CACGTTTTACGGT-----------GTA----C----AC-----------------------GATAACTGGT--CACA-TA-----------A-T-T--ATCT-GATTTAAAATAAG-AAAG--GAAAG-CTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGAATATTC--------T----------------------T-----TAA-----AT-TATATTCTCCAAAATTATTCATA--TGATGAAGTCTTAAT----------------------------AATCATAAAAAGTCCCAACTTCCTAACTTTAAAAACACCAAAGTTATGGCAT--------------T------------TCCAATCGTTCAG---------TTAGGATATAGTCGGCCGATCCTTATGAAATTTGT----TAGGTCGGA---------TTGATTGGCCAAATATA
droBia1 scf7180000302291:317511-317754 - C-TTCA---------AGGGAGC-----CCTG---------CCCGG--------------GG------GCCCT-CCTCTTTTTGACTTGGGTAACCCAC--T------------GAAGG-CA-G--ACCC-CATCCCAAACAAG-AAAG--G-AAG-TTAACTTCGGC--AAGCCGAAGTTTGTATACTCTTGCAGTTATAAG------------------------------------------------------------------------------------------------------------AAACACAATGT----------------------------------------------CAAATTTTTAAGGATTCGT-----------GTTGACCATTTTTTTGACATCTATATGTTAGAGTAGTCCGATTTTTGTTAAATTAAATTCGAAATTCCTAAAAATT-----------TT--AAAAA
droTak1 scf7180000415535:14765-15036 - C-AG-AAGTTT---GAAGGAACTTATGTGGC---------G--------------------TAA--------------ATTTAGTTTTAGCAAAACATACAA-GTTG-----------GTT-GA--TATGTATAAAAAACAAG-AAAG--G-AAG-CTAGCTTCGGC--CAGCCGAAGCTTATATACCCTTGCAGGTAGTTC--------C----------------------T---ATTAA-----TT-TAC-------------AAA---TCGCAAAAA-------------------------------------TGT----------------------------------------------TAATTTTCTTATTATTTCTCATTAATTTT-G-CGTTCGTTTCAATGGCAGCTATATGATATAGTAGTTCGATTTTGATAAAATTAAAATCGAAATTCGAAAATATT-----------TGAAAAGAG
droEug1 scf7180000409111:41120-41174 - A---------------------------------------------------------------------------------------------------------------------------------------AAATAAT-TAAA--G-AAG-CTAACTTCGGC--AAGCCAAAGTTTATATACCCCTGCAGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3R:17224321-17224430 - T-AAAAACTATCTGGATAACGC-----TGAG---------CACGG--------------TG------CGATC-TA---CTTTAGTTTGGGTGAGTTTA---C-ATAGAGTGTTGTAAA-ATAA---GC-TTATCTAAAAAAAT-TCAG--GGATT-TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACT
droSim2 2r:5018195-5018256 + T-A-------------------------------------------------------------------------------------------------------------------------------------TAACAAA-AAAG--A-AAT-CTATCTTTAGC--AAGCCGAAGTTTGTATACCCTTTCAGGAGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA
droSec2 scaffold_11:760936-761034 + T-GGGAAAAATATA----------------------------------------------------------ATA---TTGCTTCT-------------------CA--------GAT-ATGGAAATTC-AATTTGAAACGAAGAAAG--G-AAG-ATAGCTTCGTC--AAGCCGAATCTTATATACCCTTGCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:12088559-12088636 + T-AAAAAATTCCTGGACGGAGC-----TACA---------CATGG--------------AG------CTATT-TA---CTTCAGCTTGGGTTAG----------------------------------------------------------------------------------TGCCATTATTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGAGTT-----------T------AA
droEre2 scaffold_4644:304239-304299 + A-TTT----------------------------------------------------------------------------------------------------------------------------------AAGCCGAG-AAAG--G-AAG-ATAACTGCGGC--CAGCCGAAGTTTATGTACCTTTGCTGTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:3571356-3571410 - G-CAGCAGTTCCTCGATGGGGC-----CACC---------GACGG--------------AG------TCATC-TA---CTTCAGTCTGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_2:3760043-3760097 - G-CAGCAGTTCCTCGATGGGGC-----CACG---------GACGG--------------AG------TCATC-TA---CTTCAGTCTGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004516:1121932-1122215 - T-CAAAAGTCTTTCCATTTACC-----CATT--TAATCAT-----------TTG----C--T-ATCA-----ATA---TTTTTGCT-------------------TA-----------GCT-GA--CTT-AATTAAAAACCAG-AGGGCTG-GGG-CTAACTTCGACC-GCGTCAAAGTTTGTATACCCTTGCAACTTTTTTGGTAACTC----------TTTCCTTACCTCTAGCCATAAA-----TG-TGG-------------AAA---TAACGAAAA-------------------------------------TATCG-------------------------------ATCAAAGTCA------------------------CTGTTTTCGACCGATCGTTCCTATGGGAGCTATATGATATAGTCACCCGATCTTGATCAAATTTGG----CATAGTCGT---------TTATATGTATAATAAAC
droVir3 scaffold_12958:2237804-2237996 + C-TTTA----------------------------------------------------T--TTAT-----------------------AATAACATA--TAT-T-T----------A-ATTTAA--TAT-AATAAAAAACGAG-AAAG--AAAGG-CTATCTTCGGC--ACGCCGAAGATCTAATACCCTTGCAGACCAAAC--------C----------------------T---TTT------------CA----TAATG--------------CT-------TAAAGTGCTTTGCCCGTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTTA--------ATGCCAAGTTTG--------GTCAAG---------ATATCTTGATAAACAAA
droMoj3 scaffold_6540:33728966-33729020 + C-CAGAAGTTCCTGGACGAGGC-----AAAA---------CATGG--------------CG------CCATC-TA---CTTTAGTCTGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14624:1316873-1317053 - A-AA--------------------------------------------------------------------------------------------------------------------------------------ATAAC-TAAG--AATTGCTTATCTTAGAC--AAGTCGAACATTATATACCCTCGTAGAATGAAG--------AAAAATTGCAGACAGTTATGTTTTAC-----TACA-ATTATAAA---TAAATACATAAG---TATTGTAAAA-----------------------------------------------------------------------------------------------------------------------------------------GTCCGATTTTAAAAGTTGTTTGTCCAAATATTTG------AAGTTGAA---------TTCTTATATTTAAGAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
T-CAGAAGTTCCTCGATGGAGC-----CACT---------CACGG--------------AG------CCATC-TA---CTTTAGTTTGGGTAAGATAT--A------------GTGAT-TTGA---AA-GTATTTAAAACAAG-AAAG--GAAAG-CTAACTTCGGGCGGAGCCGAAGTTTATATACCCTTGCAGTTGAGTT---------------GCAGTCCGCTAGGTGGCGC-----CACGCATCTTATA---TTATTAGATATA---TAGC--GG-------------------------------------------------------------------------------------------------------------------------------------------ATCGTATATAGTCGGCCGATCCTTATGAAATTTGG----CATATCGAA---------TTATTTTGCCAAAAGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................TTTAAAACAAG-AAAG--GAAAG-CTAACT...........................................................................................................................................................................................................................................................................................................................................26200.459090000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTATGAAATTTGG----CATA...............................22200.102020000
............................................................................................................................................................................................................................................................TA---TTATTAGATATA---TAGC--GG-------------------------------------------------------------------------------------------------------------------------------------------ATCGT.....................................................................25200.051010000
................................................................................................................................................................................................................................................................................TAGC--GG-------------------------------------------------------------------------------------------------------------------------------------------ATCGTATATAGTCGGCC.........................................................23200.051100000
.............................................................................................................................................................................................TTGCAGTTGAGTT---------------GCAGTCCGCTAG........................................................................................................................................................................................................................................................................25200.051100000
...................................................................................................................................ATTTAAAACAAG-AAAG--GAAAG-CTAACC...........................................................................................................................................................................................................................................................................................................................................27200.051010000
...............................................................................................................................................................................AAGTTTATATACCCTTGCAGT.........................................................................................................................................................................................................................................................................................................21200.051000010
...............................................................................................................................................................................................GCAGTTGAGTT---------------GCAGTCCGCTAGGT......................................................................................................................................................................................................................................................................25200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATAGTCGGCCGATCCTTATGAAA............................................27200.051100000
............................................................................................................................................................................................CTTGCAGTTGAGTT---------------GCAGTCCGC...........................................................................................................................................................................................................................................................................23200.051100000
....................................................................................................................................................................................................TGAGTT---------------GCAGTCCGCTAGGTGGC...................................................................................................................................................................................................................................................................23200.051010000
droBip1
TGCAGAAACGCTTGGATGAAAC-----TTAA---------GAAGTGACTGTTTCTGTCT--TCA--------------GTTGAGTCTTGCCAACTCTT------------------G-T---CA--TTTAAAGCAAAAACAAG-AAAG--GAAAG-CTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTTAAAAC--------C----------------------G-----------------------------GATATA---TATCGCAAAC-----------------------------------------------------------------------------------------------------------------------------------------ATCGGATATAGTTGGCCGATCCTTACAAAATTTTG----CATGTCGTA---------TTATTTTGCCAAAAATASizeHit CountTotal NormTotal
No Reads
droKik1
T-TC-------CGCGATGGACC-----AACC---------ACCGA--GAATTA------TG------GCCAT-TA---CATGTGTCCGGGTAAGAAAA--AA---------------C-AT-AA--AT-AAATCAAAAACAAG-AAAG--G-AAG-CTAACTTCGGC--ACGCCGAAGTTTGTATACCCTTGCAAATGGGTT--------T----------------------TCA-----TA-----TTTATA---TCAAAAATTATA---A--TGCCGAA-------------------------------------------------------------------------------------------------------------------------------------------AACAGACACTAAACAGAGTTTCATAACATTTTA----CCTAT--AC---------TTATTATGTTTACAGTTSizeHit CountTotal NormTotal
No Reads
droFic1
T-CTGAAACTCCTCGATCATAT-----GACG---------CATTT--------------CA------ATACC-CG---CTAATGTTTTGGCAAGGAGA---A-GATG-----------GAT-AC--TTTAATATTAAAACAAG-AAAG--G-AAG-CTAGCTTCGGC--AAGCCGAAGCTTATATACCCTTACAGTCACTAAATATGTCG----------------------------------------AACA----AAATA--------------CA-------TAAA-------------------------------------AG--C--------------TAAACAGCATCGAAGCTATGACAATTTTTCTATTAATTTT-----------CCAAATTGTTCATATGACAGCTATATGATATAGTCGTCCGATTTTGATGAAATTTAAATCAAGACTCA----------------------TTAGAASizeHit CountTotal NormTotal
No Reads
droEle1
T-CAGAAGTTTCTA--TGGGTG-----TAAC---------GAAGTTAGAGTTTA----T--TGAG--TAAAG-TA---TT-------------------TTA-T-T----------G-TCTAGA--TTT-AAAATAAAACAAG-AAAG--A-AAG-CAAACTTCGGC--AAGCCGAAGTTCATATACCCTTGCAGCTATTGCAAGAATTT----------------------------------------AACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGAAAACATTAAAATTATGATTTA-C------TGCGTATATGTTT--AAAAASizeHit CountTotal NormTotal
No Reads
droRho1
C-CGGCGGCGCCTCGAAGAAAA-----CACGTTTTACGGT-----------GTA----C----AC-----------------------GATAACTGGT--CACA-TA-----------A-T-T--ATCT-GATTTAAAATAAG-AAAG--GAAAG-CTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGAATATTC--------T----------------------T-----TAA-----AT-TATATTCTCCAAAATTATTCATA--TGATGAAGTCTTAAT----------------------------AATCATAAAAAGTCCCAACTTCCTAACTTTAAAAACACCAAAGTTATGGCAT--------------T------------TCCAATCGTTCAG---------TTAGGATATAGTCGGCCGATCCTTATGAAATTTGT----TAGGTCGGA---------TTGATTGGCCAAATATASizeHit CountTotal NormTotal
No Reads
droBia1
C-TTCA---------AGGGAGC-----CCTG---------CCCGG--------------GG------GCCCT-CCTCTTTTTGACTTGGGTAACCCAC--T------------GAAGG-CA-G--ACCC-CATCCCAAACAAG-AAAG--G-AAG-TTAACTTCGGC--AAGCCGAAGTTTGTATACTCTTGCAGTTATAAG------------------------------------------------------------------------------------------------------------AAACACAATGT----------------------------------------------CAAATTTTTAAGGATTCGT-----------GTTGACCATTTTTTTGACATCTATATGTTAGAGTAGTCCGATTTTTGTTAAATTAAATTCGAAATTCCTAAAAATT-----------TT--AAAAASizeHit CountTotal NormTotal
No Reads
droTak1
C-AG-AAGTTT---GAAGGAACTTATGTGGC---------G--------------------TAA--------------ATTTAGTTTTAGCAAAACATACAA-GTTG-----------GTT-GA--TATGTATAAAAAACAAG-AAAG--G-AAG-CTAGCTTCGGC--CAGCCGAAGCTTATATACCCTTGCAGGTAGTTC--------C----------------------T---ATTAA-----TT-TAC-------------AAA---TCGCAAAAA-------------------------------------TGT----------------------------------------------TAATTTTCTTATTATTTCTCATTAATTTT-G-CGTTCGTTTCAATGGCAGCTATATGATATAGTAGTTCGATTTTGATAAAATTAAAATCGAAATTCGAAAATATT-----------TGAAAAGAGSizeHit CountTotal NormTotal
No Reads
droEug1
A---------------------------------------------------------------------------------------------------------------------------------------AAATAAT-TAAA--G-AAG-CTAACTTCGGC--AAGCCAAAGTTTATATACCCCTGCAGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
T-AAAAACTATCTGGATAACGC-----TGAG---------CACGG--------------TG------CGATC-TA---CTTTAGTTTGGGTGAGTTTA---C-ATAGAGTGTTGTAAA-ATAA---GC-TTATCTAAAAAAAT-TCAG--GGATT-TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................TGAG---------CACGG--------------TG------CGATC-TA---CTTTAGTTT......................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATAACGC-----TGAG---------CACGG--------------TG------CGATC-TA---CT.............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TA---CTTTAGTTTGGGTGAGTTTA---C-ATA...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AACTATCTGGATAACGC-----TGAG---------CACGG--------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TGTAAA-ATAA---GC-TTATCTAAAAA.................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
T-A-------------------------------------------------------------------------------------------------------------------------------------TAACAAA-AAAG--A-AAT-CTATCTTTAGC--AAGCCGAAGTTTGTATACCCTTTCAGGAGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
T-GGGAAAAATATA----------------------------------------------------------ATA---TTGCTTCT-------------------CA--------GAT-ATGGAAATTC-AATTTGAAACGAAGAAAG--G-AAG-ATAGCTTCGTC--AAGCCGAATCTTATATACCCTTGCAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................AATCTTATATACCCTTGCAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2130.3311000
droYak3
T-AAAAAATTCCTGGACGGAGC-----TACA---------CATGG--------------AG------CTATT-TA---CTTCAGCTTGGGTTAG----------------------------------------------------------------------------------TGCCATTATTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGAGTT-----------T------AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....AAATTCCTGGACGGAGC-----TACA---------CATGG--------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.33100000010000
.......ATTCCTGGACGGAGC-----TACA---------CATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.33100100000000
T-AAAAAATTCCTGGACGGAGC-----TACA---------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33101000000000
T-AAAAAATTCCTGGACGGAGC-----T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.33100100000000
....AAAATTCCTGGACGGAGC-----T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.33100100000000
......AATTCCTGGACGGAGC-----TACA---------CATGG--------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.33100000010000
..AAAAAATTCCTGGACGGAGC-----TACA---------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.33101000000000
T-AAAAAATTCCTGGACGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.33100000010000
..........CCTGGACGGAGC-----TACA---------CATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.33100000010000
droEre2
A-TTT----------------------------------------------------------------------------------------------------------------------------------AAGCCGAG-AAAG--G-AAG-ATAACTGCGGC--CAGCCGAAGTTTATGTACCTTTGCTGTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
G-CAGCAGTTCCTCGATGGGGC-----CACC---------GACGG--------------AG------TCATC-TA---CTTCAGTCTGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................G------TCATC-TA---CTTCAGTCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030300000000
......AGTTCCTCGATGGGGC-----CACC---------GACGG--------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020100100000
............................................................G------TCATC-TA---CTTCAGTCTGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020100100000
.......GTTCCTCGATGGGGC-----CACC---------GACGG--------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................G------TCATC-TA---CTTCAGTCTGGGTTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2411.0010100000000
..............GATGGGGC-----CACC---------GACGG--------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...................GGC-----CACC---------GACGG--------------AG------TCATC-T...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
...........................................GG--------------AG------TCATC-TA---CTTCAGTCTGGGTTC................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..........................................CGG--------------AG------TCATC-TA---CTTCAGTCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
..........CCTCGATGGGGC-----CACC---------GACGG--------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
...........................................GG--------------AG------TCATC-TA---CTTCAGTCTGGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.......GTTCCTCGATGGGGC-----CACC---------GACGG--------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............CGATGGGGC-----CACC---------GACGG--------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
droPer2
G-CAGCAGTTCCTCGATGGGGC-----CACG---------GACGG--------------AG------TCATC-TA---CTTCAGTCTGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...AGCAGTTCCTCGATGGGGC-----CACG---------GAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................CATC-TA---CTTCAGTCTGGGT..................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............................................................G------TCATC-TA---CTTCAGTCTGGGTTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2411.001100000
............................................................G------TCATC-TA---CTTCAGTCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............................................................G------TCATC-TA---CTTCAGTCTGGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
............................................................G------TCATC-TA---CTTCAGTCTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............CGATGGGGC-----CACG---------GACGG--------------AG------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...................................................................TCATC-TA---CTTCAGTCTGGGTTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2311.001010000
droWil2
T-CAAAAGTCTTTCCATTTACC-----CATT--TAATCAT-----------TTG----C--T-ATCA-----ATA---TTTTTGCT-------------------TA-----------GCT-GA--CTT-AATTAAAAACCAG-AGGGCTG-GGG-CTAACTTCGACC-GCGTCAAAGTTTGTATACCCTTGCAACTTTTTTGGTAACTC----------TTTCCTTACCTCTAGCCATAAA-----TG-TGG-------------AAA---TAACGAAAA-------------------------------------TATCG-------------------------------ATCAAAGTCA------------------------CTGTTTTCGACCGATCGTTCCTATGGGAGCTATATGATATAGTCACCCGATCTTGATCAAATTTGG----CATAGTCGT---------TTATATGTATAATAAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................TG-GGG-CTAACTTCGACC-GCGTCAAAG...........................................................................................................................................................................................................................................................................................................................26200.10200020
.........................................................................................................................................................................................................TGGTAACTC----------TTTCCTTACCTCTAGCC................................................................................................................................................................................................................................................................26130.08101000
................................................................................................................................................................................................................................................................................TAACGAAAA-------------------------------------TATCG-------------------------------ATCAAAGTCA------------------------CTGT.....................................................................................................28140.07101000
....................................................................................................................................................................................................TTTTTTGGTAACTC----------TTTCCTTACCTC.....................................................................................................................................................................................................................................................................26140.07101000
................................................................................................................................................................................................................................................................................TAACGAAAA-------------------------------------TATCG-------------------------------ATCAAAGTCA------------------------CTG......................................................................................................27140.07100010
.............................................................................................................................................................................................................................TTCCTTACCTCTAGCCATA.............................................................................................................................................................................................................................................................19200.05101000
....................................................................................................................................................................................TGTATACCCTTGCAACTTTTTTGG.................................................................................................................................................................................................................................................................................................24200.05101000
droVir3
C-TTTA----------------------------------------------------T--TTAT-----------------------AATAACATA--TAT-T-T----------A-ATTTAA--TAT-AATAAAAAACGAG-AAAG--AAAGG-CTATCTTCGGC--ACGCCGAAGATCTAATACCCTTGCAGACCAAAC--------C----------------------T---TTT------------CA----TAATG--------------CT-------TAAAGTGCTTTGCCCGTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTTA--------ATGCCAAGTTTG--------GTCAAG---------ATATCTTGATAAACAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................AAAACGAG-AAAG--AAAGG-CTATCTTCGGC--....................................................................................................................................................................................................................................................................................................................................28203.356700232200100000100000000000006261101000010000000000000000000000020
.......................................................................................................................................AAAACGAG-AAAG--AAAGG-CTATCTTCGG.......................................................................................................................................................................................................................................................................................................................................27201.803600110111000000100000010010020112100010002000000000000000000000000
.......................................................................................................................................AAAACGAG-AAAG--AAAGG-CTATCTTCG........................................................................................................................................................................................................................................................................................................................................26201.3527000010000001000000004000005080002001032000000000000000000000000
........................................................................................................................................AAACGAG-AAAG--AAAGG-CTATCTTCGGC--....................................................................................................................................................................................................................................................................................................................................27201.1022005021011100000000001000000300150000001000000000000000000000000
.......................................................................................................................................AAAACGAG-AAAG--AAAGG-CTATCTTC.........................................................................................................................................................................................................................................................................................................................................25200.8016003000200000000000003000010031102000000000000000000000000000000
.......................................................................................................................................AAAACGAG-AAAG--AAAGG-CTATCT...........................................................................................................................................................................................................................................................................................................................................23200.6513000000001000000000000000000031000000016100000000000000000000000
.......................................................................................................................................AAAACGAG-AAAG--AAAGG-CTATCTT..........................................................................................................................................................................................................................................................................................................................................24200.6012003010002000000000000000000040000100010000000000000000000000000
........................................................................................................................................AAACGAG-AAAG--AAAGG-CTATCTTCGG.......................................................................................................................................................................................................................................................................................................................................26200.5511001001002000000000000000000040200010000000000000000000000000000
.........................................................................................................................................AACGAG-AAAG--AAAGG-CTATCTTCGGC--....................................................................................................................................................................................................................................................................................................................................26200.5010000002000000000000000000100030020000001100000000000000000000000
..........................................................................................................................................ACGAG-AAAG--AAAGG-CTATCTTCGGC--....................................................................................................................................................................................................................................................................................................................................25200.459000300002000000000000000000011020000000000000000000000000000000
........................................................................................................................................AAACGAG-AAAG--AAAGG-CTATCTTC.........................................................................................................................................................................................................................................................................................................................................24200.408000001000000000000001000100030010000100000000000000000000000000
........................................................................................................................................................................................TACCCTTGCAGACCAAAC--------C----------------------T---TTT------------CA----...........................................................................................................................................................................................................................................2590.222001000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAC...............................................................25200.204000000020010000000000000000010000000000000000000000000000000000
...........................................................................................................................................CGAG-AAAG--AAAGG-CTATCTTCGGC--....................................................................................................................................................................................................................................................................................................................................24200.204000200000000000000000000020000000000000000000000000000000000000
........................................................................................................................................AAACGAG-AAAG--AAAGG-CTATCTTCG........................................................................................................................................................................................................................................................................................................................................25200.204000000000000000000000000000112000000000000000000000000000000000
...................................................................................................................................................................................TCTAATACCCTTGCAGACCAAAC--------C----------------------T---T...............................................................................................................................................................................................................................................................2650.201000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................GATCTAATACCCTTGCAGACCA......................................................................................................................................................................................................................................................................................................2260.171000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAG...............................................................25200.153000000000000000000001000000100010000000000000000000000000000000
........................................................................................................................................AAACGAG-AAAG--AAAGG-CTATCT...........................................................................................................................................................................................................................................................................................................................................22200.153000000002000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................TAATACCCTTGCAGACCAAAC--------C----------------------T---TT..............................................................................................................................................................................................................................................................2570.141000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................CCCTTGCAGACCAAAC--------C----------------------T---TTT------------CA----TAATG--------------C.......................................................................................................................................................................................................................2990.111001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TACCCTTGCAGACCAAAC--------C----------------------T---TTT------------CA----TAA........................................................................................................................................................................................................................................2890.111000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................ACGAG-AAAG--AAAGG-CTATCTTCGGC--A...................................................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000001001000000000000000000000000000000000
.......................................................................................................................................AAAACGAG-AAAG--AAAGG-CTAT.............................................................................................................................................................................................................................................................................................................................................21200.102000000010000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................CCGTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATA................................................................27200.102000000000000000000000000001010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTTA--------....................................................26200.102000000000000000000000000000000020000000000000000000000000000000
.............................................................................................................................................AG-AAAG--AAAGG-CTATCTTCGG.......................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000000001000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAA....................................................................21200.102000000000000000000000000000002000000000000000000000000000000000
.......................................................................................................................................AAAACGAG-AAAG--AAAGG-C................................................................................................................................................................................................................................................................................................................................................18200.102000000000000000000002000000000000000000000000000000000000000000
..............................................................................................................................................G-AAAG--AAAGG-CTATCTTCGGC--ACG.................................................................................................................................................................................................................................................................................................................................24200.102001000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................AAACGAG-AAAG--AAAGG-CTATCTT..........................................................................................................................................................................................................................................................................................................................................23200.102000000000000001000000000000100000000000000000000000000000000000
...........................................................................................................................................CGAG-AAAG--AAAGG-CTATCTTCGGC--AC..................................................................................................................................................................................................................................................................................................................................26200.102001000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGT..............................................................27200.102000000000000000000000000000000000020000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGT..............................................................24200.102000010000000000000000000000000000010000000000000000000000000000
........................................................................................................................................AAACGAG-AAAG--AAAGG-CTATCTTCGGC--A...................................................................................................................................................................................................................................................................................................................................28200.102000000000000000000000000100000000000010000000000000000000000000
.......................................................................................................................................AAAACGAG-AAAG--AAAGG-CTATC............................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000002000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTTA--------A...................................................25200.102000000000000000000000000001000000001000000000000000000000000000
...........................................................................................................................................CGAG-AAAG--AAAGG-CTATCTTCGG.......................................................................................................................................................................................................................................................................................................................................23200.102000000002000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CCCGTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGA.....................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................AAAACGAG-AAAG--AAAGG-CTA..............................................................................................................................................................................................................................................................................................................................................20200.051000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ACGAG-AAAG--AAAGG-CTATCTTCGGT--C...................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................AAAAACGAG-AAAG--AAAGG-CTATCT...........................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................ACGAG-AAAG--AAAGG-CTATCTTCGG.......................................................................................................................................................................................................................................................................................................................................24200.051000000001000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CCCGTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAA...................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................GAAGATCTAATACCCTTGCAGAC........................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................AAAACGAG-AAAG--AAAGG-CTATCTTCGGC--A...................................................................................................................................................................................................................................................................................................................................29200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTTA--------ATGCC...............................................28200.051000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTTA--------ATGCC...............................................27200.051000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................AAACGAG-AAAG--AAAGG-CTA..............................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................ACGAG-AAAG--AAAGG-CTATCTTCGGC--ACG.................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAC...............................................................23200.051000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAAT.................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................CGTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGA.....................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AAG--AAAGG-CTATCTTCGG.......................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................AAAAACGAG-AAAG--AAAGG-CTATCTT..........................................................................................................................................................................................................................................................................................................................................25200.051000000010000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAA...................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTTA--------ATGC................................................22200.051000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CGAG-AAAG--AAAGG-CTATC............................................................................................................................................................................................................................................................................................................................................18200.051000000010000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TTTGCCCGTATCTAAGAAGCA..................................................................................................................................................................................21200.051000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................CGAG-AAAG--AAAGG-CTATCTTCGGC--A...................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTTA--------A...................................................26200.051000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................CCGTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGG......................................................................21200.051000000000000000000000000000000000000000100000000000000000000000
..........................................................................................................................................................................CGCCGAAGATCTAATACCCTTGCAGACC.......................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................AGATCTAATACCCTTGCAG..........................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................CGAG-AAAG--AAAGG-CTATCTTCG........................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAC...............................................................26200.051000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................AACGAG-AAAG--AAAGG-CTATCTTCGGC--A...................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTTA--------ATGC................................................25200.051000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGA.....................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAAT.................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................TCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTTA--------A...................................................27200.051000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAA..................................................................23200.051000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAG...............................................................26200.051000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTT.............................................................25200.051000000000001000000000000000000000000000000000000000000000000000
........................................................................................................................................AAACGAG-AAAG--AAAGG-CTATC............................................................................................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAGTTA--------ATG.................................................21200.051000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................CGTATCTAAGAAGCAC-------------------------------------------------------------------------------------------------------AGGGAAAATAC...............................................................27200.051000000000000000000000000000000000010000000000000000000000000000
droMoj3
C-CAGAAGTTCCTGGACGAGGC-----AAAA---------CATGG--------------CG------CCATC-TA---CTTTAGTCTGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
A-AA--------------------------------------------------------------------------------------------------------------------------------------ATAAC-TAAG--AATTGCTTATCTTAGAC--AAGTCGAACATTATATACCCTCGTAGAATGAAG--------AAAAATTGCAGACAGTTATGTTTTAC-----TACA-ATTATAAA---TAAATACATAAG---TATTGTAAAA-----------------------------------------------------------------------------------------------------------------------------------------GTCCGATTTTAAAAGTTGTTTGTCCAAATATTTG------AAGTTGAA---------TTCTTATATTTAAGAAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:04 AM