ID:

dan_1759

 Coordinate:

scaffold_13266:3306743-3306811 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.0 -4.7 -4.5

Flybase annnotation

CDS [Dana\GF12700-cds]; CDS [Dana\GF12700-cds]; exon [dana_GLEANR_12718:1]; exon [dana_GLEANR_12718:2]; intron [Dana\GF12700-in]

No Repeatable elements found

mature
  1. scaffold_10204:6032-6050 -
  2. scaffold_10214:5408-5426 -
  3. scaffold_13117:11440-11458 +
  4. scaffold_13117:19596-19614 +
  5. scaffold_13266:9374-9392 +
  6. scaffold_13266:36502-36520 +
  7. scaffold_13266:46456-46474 +
  8. scaffold_13266:55794-55812 +
  9. scaffold_13266:65230-65248 +
  10. dan_1759  scaffold_13266:3306772-3306790 +
  11. scaffold_13368:1794-1812 +
  12. scaffold_13450:3469-3487 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------##################################################
ACCTGGCAGCGCTATGAGAGAGAAAGATGAAGTACGTTTTTCAGATCGTGGTAAATACCTCCATCCAAAAAATTTTAGCATCAATGGGTTTTAAGGGACTTCTCTTCACATTTACTCAGATGCCATATGCGGCTGCGTTCCCGGCCTGTCAAGTCCCAGCCAAGTCTTC
**************************************************..................................(((((...(((((....))))).......))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V055
head
 V039
embryo
 M044
female body
..................................................GTAAAGACCCCCACCCAAAAAA................................................................................................. 22 3 1 1.00 1 1 0 0 0
...........ATATGCGAGAGAAAGATGAAGGA....................................................................................................................................... 23 3 2 0.50 1 0 1 0 0
...............................................................................ATCAATGGGTTTTAAGGGA....................................................................... 19 0 12 0.17 2 1 0 0 1
................................................................CTAAAAAATTTTAGCACCA...................................................................................... 19 2 9 0.11 1 1 0 0 0
...........................................................................TTGCATCAATGGGTTTTAAGGGAC...................................................................... 24 1 9 0.11 1 1 0 0 0
......................................TATCAGATCGAGGTAAAT................................................................................................................. 18 2 10 0.10 1 0 0 1 0
....................................................AAATACCTACACCCAAAAAA................................................................................................. 20 2 15 0.07 1 1 0 0 0
....................................TGTTTGAGCTCGTGGTAAA.................................................................................................................. 19 3 20 0.05 1 1 0 0 0
.......AGGGCTATGAGTGACAAAG............................................................................................................................................... 19 3 20 0.05 1 0 1 0 0
....................................TATTTGAGATCGTGGTAA................................................................................................................... 18 2 20 0.05 1 0 0 1 0

Anti-sense strand reads

TGGACCGTCGCGATACTCTCTCTTTCTACTTCATGCAAAAAGTCTAGCACCATTTATGGAGGTAGGTTTTTTAAAATCGTAGTTACCCAAAATTCCCTGAAGAGAAGTGTAAATGAGTCTACGGTATACGCCGACGCAAGGGCCGGACAGTTCAGGGTCGGTTCAGAAG
**************************************************..................................(((((...(((((....))))).......))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 M058
embryo
 M044
female body
.................CTCTCTTACTACTTCATGTTA................................................................................................................................... 21 3 7 0.14 1 1 0 0
.............................................................................CGTAGTTACCCAAAATTCC......................................................................... 19 0 12 0.08 1 0 1 0
..............................................................................................CCCTGACGAGAAGTGGAAC........................................................ 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13266:3306693-3306861 + dan_1759 ACCTGGCAGCGCTATGAGAGAGAAAGATGAAGTACGTTTTTCAGATCGTGGTAAATACCTCCATCCAAAA--------AATTTTAGCATCAATGGGTTTTAAG---------GGACTTCTCTTCACATTTACTCAGATGCCATATGCGGCTGCGTTCCCGGCCTGTC--------AAGTCCCAGCCAAG-TCTTC
droBip1 scf7180000396427:1774713-1774899 + ACCTGGCAGCGACATGACAGAGCAAGAGATAGTTCATTTTTCACGTCCTGGTAAATACCTCTTCCCACACTGTTGGTGACTTTTTGCATCT--------TATGGTGAGGTTAGTTCTTCACTTGACGTTTACCCAGATACCATCTGTGGCTGTGTTCCCAGCCTACACGAGATGAAAGTCCCCGATAAGATCTTC
droBia1 scf7180000302292:3062518-3062522 - AGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACCTGGCAGCGCTATGAGAGAGAAAGATGAAGTACGTTTTTCAGATCGTGGTAAATACCTCCATCCAAAA--------AATTTTAGCATCAATGGGTTTTAAG---------GGACTTCTCTTCACATTTACTCAGATGCCATATGCGGCTGCGTTCCCGGCCTGTC--------AAGTCCCAGCCAAG-TCTTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................ATCAATGGGTTTTAAG---------GGA................................................................................19120.172110000
droBip1
ACCTGGCAGCGACATGACAGAGCAAGAGATAGTTCATTTTTCACGTCCTGGTAAATACCTCTTCCCACACTGTTGGTGACTTTTTGCATCT--------TATGGTGAGGTTAGTTCTTCACTTGACGTTTACCCAGATACCATCTGTGGCTGTGTTCCCAGCCTACACGAGATGAAAGTCCCCGATAAGATCTTCSizeHit CountTotal NormTotal
No Reads
droBia1
AGCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 02:57 AM