dan_1757

exon [dana_GLEANR_12257:3]; CDS [Dana\GF12251-cds]; CDS [Dana\GF12251-cds]; exon [dana_GLEANR_12257:4]; intron [Dana\GF12251-in]

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GGCAGGGACAACTGTATCACCTGGGGGGCATGCCCTATTATGAGATAAAAGTAAGTAATACTTTAGAATTTATTTTAATAGAAAATTCATATTTTATGACACACCCCAAATGAACTTACTAATAATATAGTCTAGATAGCATTTATTAATCACTAAGACTGGGGAAAGCTATCCATTTCATGTGATTAACGCAAATTAATTTCATAATTTGTATTTTCGTAGTACCATTGCTGTGGACAAACAGGTCCTTCCAACTATCCGGACAGCGGCTT ************************************************((((((..((.((((((..((((.(((.(((.((.(((((...................))))).)).))).))).))))))))))))..))))))(((((((...((.((((........)))).))...)))))))..((((((((......))))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V105 male body	M058 embryo	M044 female body
................................................................................................................................................ATTAAGCACTACGCCTGGGGA...........................................................................................................	21	3	3	1.00	3	2	1	0
................................................................................................................................................ATTAAGCACTCAGCCTGGGGA...........................................................................................................	21	3	2	1.00	2	2	0	0
......................................................................................................................................................................................................................................................CCTTCCAACTATCCGGACAGCGGC..	24	0	1	1.00	1	1	0	0
................................................................................................................................................ATTAAGCACTCCGACTGGGGA...........................................................................................................	21	3	1	1.00	1	1	0	0
.......................................................................................................................................................................................................................................................CTTCCAACTATCCGGACAGC.....	20	0	1	1.00	1	0	1	0
..AAGAGACAACTGTATCACC...........................................................................................................................................................................................................................................................	19	2	8	0.13	1	0	1	0
................................................................................................................................................ATTAAGCACTCAGCCTGGG.............................................................................................................	19	3	14	0.07	1	0	0	1
.......................................................................................AATATTTTTTGACACACCC......................................................................................................................................................................	19	2	16	0.06	1	0	1	0
..........................................................................................ATTTTTTGACCCACCCCA....................................................................................................................................................................	18	2	20	0.05	1	0	1	0

CCGTCCCTGTTGACATAGTGGACCCCCCGTACGGGATAATACTCTATTTTCATTCATTATGAAATCTTAAATAAAATTATCTTTTAAGTATAAAATACTGTGTGGGGTTTACTTGAATGATTATTATATCAGATCTATCGTAAATAATTAGTGATTCTGACCCCTTTCGATAGGTAAAGTACACTAATTGCGTTTAATTAAAGTATTAAACATAAAAGCATCATGGTAACGACACCTGTTTGTCCAGGAAGGTTGATAGGCCTGTCGCCGAA ************************************************((((((..((.((((((..((((.(((.(((.((.(((((...................))))).)).))).))).))))))))))))..))))))(((((((...((.((((........)))).))...)))))))..((((((((......))))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	M044 female body	M058 embryo
...........................................................................................................................................................................................................................................CTGCTTGTCCAAGAAGGTT..................	19	2	3	0.33	1	0	1	0
................................................................................................ACAGGGTGGGGTTTAGTTGAA...........................................................................................................................................................	21	3	4	0.25	1	1	0	0
...........................................................................ATGATCCTTTAAGTATGAAAT................................................................................................................................................................................	21	3	6	0.17	1	1	0	0
..................................................................................................................................................................................................................CATAAAACCCTCATAGTAAC..........................................	20	3	13	0.08	1	0	0	1
..........................................................................................................................................................................................................GTAAAAAACATAAAAGCTTCAT................................................	22	3	13	0.08	1	0	1	0
................................................................................................................................................................................................................................................TGTCCAGGAGAGTTGAAAG.............	19	3	16	0.06	1	1	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13266:3186548-3186819 -	dan_1757	GGCAGGGACAACTGTATCACCTGGGGGGCATGCCCTATTATGAGATAAAAGTAAGTAAT-ACTTTAGAATTTATTT-TA---------------A------------------------------------------------TAGAAAA-----------TTCATATT-------------------------------------------TTATGACACACCCCAAATGAACTTACTAATAATATAGTCTAGATAGCATTTATTAATCACTAAGACTGGGGAAAGCTATC---CATTTCATGTGATTAACGCAAATTAATTTCATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------TTGT-AT----TTTCGTAGTACCATTGCTGTGGACAAACAGGTCCTTCCAACTATCCGGACAGCGGCTT
droBip1	scf7180000396427:1656963-1657203 -		GGCAGGGACAAATCTTTCACCAGGGAAGCATGCCCTATTATGAAATAAAAGTAAGTTAT-ACTTTTGAT---------TAC-A-------------------------------------------------------TTTTA--------------------------ATCAAAAACCA-----------------------AAATATTTTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------CAAAATTAATTGC-CAAAAT----------------------GTTAGCATAG-------TGTATTA--AG--------------TTT-AATTACCAATTTTTTATTTTTCAAATT------------------------TTATGACAAT-TT----TTTTTTAGTACCATTGCTGTGGACAGACTGGTCCATCAAACTATCCAGACAGCGGCTT
droKik1	scf7180000302640:47571-47673 -		GGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACC-----------------TTTTTATCTCTGTTTGCGTAAATATTAA-CCTATTTA----TCATTTAGTACCACTGCTGCGGGCAGACGGGGCCCGCGAACTATCCGGATAGTGGCCT
droFic1	scf7180000453955:315439-315762 +		GGCAAGGACAGCTCTACCGAAAGAGCAGCATGTCCTACTACGAGATCCAGGTGAGTTTC-GGAG---GTACAGAAG-TATC-------------------CA------------AG------------------------------------------------------TCCGCCTTAAACACGTTTCAAGAATTGGAAATATCAC-----------------------------------------------------------AATAACTACAATTGGTAACAGCTCCTACGCAGTCTGTGT---------------------T-----------------------------------------TCCTAAAAATCACAAGAGAAAAATAACTTATTGAACTAATTTAATCAA------------------------------TTATAA---------GT---TTG--AG--------------TCA-ACTTGCAAAC-----------------CTTTTATCTCTGTTTACGCAAATATTAA-CCGAA-TC----GTTTTCAGTACCACTGCTGCGGCCAGACGGGGCCCTCAAACTACATAGATAGTGGGCT
droEle1	scf7180000491265:63648-63965 -		GGCAGGGACAGCTCTATCATCAGAAAAGCATGTCCTACTATGAGATTAAGGTAAGTTACTGGGG---GCATT--TGAAGACCA-------------------------------------------------------TTCTG--------------------------ACCAGCCACCAAC-TATTTTAAGA--TAGTTAAAAAACATTATTCAC---------------------------------------------------------------GGT--------------------------------------------------TAAAGCCTTAAAGCT------AACA--GAACA--TTTTTTTTCAATTCCAAG-------------------GAA---------------AT----------------------ATTATCA--ATTAGCATT---TTG--ACAAATTTTATCGGAATTA-CC-TGCAAAC----------------GTTTTTATCTCTGTTTGCGTAAATATTAA-CCAAT-TT----TCGTTTAGTACCACTGCTGCGGGCAGACGGGGCCTACCAACTATCCGGATAGTGGCCT
droRho1	scf7180000780072:206147-206445 +		GGCAGGGTCAGCTCTATCATCAGCGAAGCATGTCCTACTATGAGATTAAGGTGAGTTAT-GGCG---GAACA----------A-------------------------------------------------------GTTTA--------------------------AAAAGCCCCGAAC-TATTTTTA------------TAAAA----------------------------------------------------------------------------------TTACCTAGTGTGTGT---------------------TA---CTAATGCCTCAAAGTT------ATAAAAAAAAATT---GTTTAAATTTTCCAG-------------------GAA---------------AT----------------------ATTATCA--ATTAGTATT---TTG--TTTAATTTTATCGGAATTA---------CC-----------------TTTTTATCTCTGTTTGCGTAAATATTAA-CCATT-CT----TTGTTTAGTACCACTGCTGTGGGCAGTCGGGGCCTAACAACTATCCGGATAGTGGCCT
droBia1	scf7180000302292:3192357-3192667 +		GGCAGGGACAGCTCTATCATCGCGGTAGTATGTCCTACTATGAGATCAAGGTGAGTTTT-GGCA---GGGGA-----------------------GTGGCCA------------AGCG-----CTTTTTTTGTATCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAT--TTCCCTTC-GATTAGATAAATGAAAGAAAATA---ATTTCCATTTTCACG-------------------AGAACTGAATTAAAGAAAAA----------------------GTTATCT--ACTAC-CTT---TTA--AGTCATTTTATCGCACATA-ATTTGCGAGC-----------------TTGCTATCTCTGTTGACCGAAATATTAA-CCTATTTATATATTATTTAGTATCATTGCTGTGGGCAGACAGGTCCCGCCGACTACCCGGATAGTGGTCT
droTak1	scf7180000415382:189677-190012 -		GGCAGGGACAGCTTTATAATCAGAGCAGAATGCCTTACTATGAAATCAAGGTAAGTTTT-ACAA---GGGCAG-----------------------TGATTAGGTGAAGAGATATGTACAGAGATTTTTAGAGATCCAAAGTC--------------------------ACCAGTCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------CTAAAACCTCTAAGTT------ACAAATAAAAAGC---ATTTTCTTTTTCACG-------------------GGAATGGAATTAA-AGAAAT-----------------ATTATATTATCA--ATAGGCTTT---CTG--AGAAATTTTATCGGAATTAATTTGGCAAAC-----------------TTGCTATCTCTGTTTACGTAAATATTAA-CCTAT-TG----TCGTTTAGTATCACTGCTGTGGGCAGACGGGGCCCTCAAACTATCCGGATAGTGGCCT
droEug1	scf7180000409672:4967465-4967721 -		GGCAGGGTCAACTGTATCACCAGGGCAGCATGTCCTTCTACGAGATCAAGGTGAGTTAT-ATTA---GGCTAG-----------------------TGACT-------------TGTA-----C-------------------------T-----------ACGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTTCCAAG-------------------GAA---------------ATGTAAAATAATCAGGAATTTATCATTATCA--A-------T---TTG--TGACATTTTATCGGACCTA-ATTTGCAAAC-----------------CTGCTATCTATGTTTACGTAAATATTAA-CCGATTTC----CCGTTTAGTATCACTGCTGCGGACAGACGGGGCCCAAAGACTATCCGGACAGCGGCCT
dm3	chr2R:2950237-2950519 -		GGCAGGGACAACTTTACCACTCGGACAGAATGTCCTACTTTGAGATCAAGGTGAGCTAT-GTAG---GGATCCTTG-GAACCTTCTCCATATATAGCAGACA------------TGAG-----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATTTTCACTTTCTCG-------------------GAAAAGGCATTAG-GAAAAT----------------------GGTATCA--GTTGGCTTT---TTTTTTGAAATTTTATCGAAATCA-TTTCGCAAGC-----------------TTGTTATCTTTGTTTAACCAAGTACTAA-ACGGCTTT----TCTTTTAGTATCACTGCTGCGGACAGACGGGGCCCGCAAACTATCCGGATAGTGGCCT
droSim2	2r:3799984-3800256 -	dsi_4530	GGCAGGGACAACTTTACCACTCGGGCAGCATGTCCTACTTTGAGATCAAGGTGAGCTAT-GTAG---GGATCGTTG-GAACCATCT-CATATAAAGCAGACA------------TGAG-----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATTTTCACTTTCTCG-------------------GAAAAGGCATTAG-GAAAAT----------------------GCTATCA--G-------T---TTG--TGAAATTTTATCGAAAATA-TTTCGCAAGC-----------------TTGTTATCTTTGTTTAACCAAGTACTAA-CCGGCTTT----TCTCTTAGTATCACTGCTGCGGACAGACGGGGCCCGCGAACTATCCAGACAGTGGCCT
droSec2	scaffold_1:618188-618460 -		GGCAGGGACAACTTTACCACTCGGACAGCATGTCCTACTTTGAGATCAAGGTGAGCTAT-GTAG---GGATCGTTG-GAACCATCC-CATATAAAGCAGACA------------TGCG-----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATTTTCACTTTCTCG-------------------GAAAAGGCATTAG-GAAAAT----------------------GCTATCA--G-------T---TTG--TGAAATTTTATCGAAAATA-TTTCGCAAGC-----------------TTGTTATCTTTGTTTAACCAAGTACTAA-CCGTCTTT----TCTTTTAGTATCACTGCTGCGGACAGACGGGGCCCGCGAACTATCCGGACAGTGGCCT
droYak3	2L:15663344-15663651 -		GGCAGGGACAACTATACCATTCGGGTAGCATGTCCTACTATGAGATCAAGGTGAGCTAT-GTAG---TCATCT--------------TAAACATA------------------------------------------------AGAAACATGAAACAAAAGGCGATCCTATTAAT---------------------------------------CTGA-----------------------------------------------------------------------------------------------------------------CAGAAACCTTGGA-----ATATAAAAAAGAACACT---ATTTTCACTTTTTCA-------------------GAAAGGAAATTAA----------------------------------TA--GATAGCCTT---ATG--TATGATTTTATCATAAGTA-TTTTGCAAGC-----------------TTGTTATCTTTGTTTAACGAAGTACTAA-CCGACTTT----TCGTTTAGTACCACTGCTGTGGCCAAACGGGGCCCGCAAACTATCCGGACAGTGGCCT
droEre2	scaffold_4929:19617258-19617558 +		GGCAGGGACAACTTTACCATTCGGGCAGCATGTCCTACTATGAGATCAAGGTGAGCTAT-GCAG---GGATCTTCA-AGACCTTCT-CATATATA------------------------------------------------AGGAACA-----------GCGATCTT-------------------------------------------ATCTGGCAGGGACCTAAGCC----GC-----------------------------------------------------------------------------------------------------TTGGC-----ATATAGTAAAGAACATT---GTTTGCACTTTTTCG-------------------GAAAGGGAATTAT-GAAAAT----------------------ATTATCA----------------G--TGCAATTTTATCGAAAGTG-TTTTGCAAGC-----------------CTTTTATCTTTGTTTA-----------A-CCAAC-TT----TCGTTTAGTATCACTGCTGTGGCCAGACAGGGCCCACAAACTACCCGGATAGCGGCCT
dp5	3:1227997-1228067 -		TCAG-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------CCAT-TC----CTTTTCAGTATCATTGCTGCGGAATGACTGGGCCCTCGAACTATCCGGACAGCGGCCT
droPer2	scaffold_2:1396138-1396208 -		TCAG-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------CCAT-TC----CTTTTCAGTATCATTGCTGCGGAATGACTGGGCCCTCGAACTATCCGGACAGCGGCCT
droWil2	scf2_1100000004513:2522641-2522794 -		GGCAAAATCAACTTTATCAAAGGGGTAGTATGTCCTATTATGAGATCAAGGTAAGTCAC-ACTTT-------------------C-----------------------------------------------------------------------------------------------------------------------------------------CCACAAATGCAT------------------------------------------------------------------------------------TCATTTTATAA-------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------ATTTCCC----TATTTTAGTATCATTGCTGTGGCATGACTGGATCTGTTAATTATCCTGACAGTGGATT
droVir3	scaffold_10324:1100318-1100389 -		GGCAGGAGCAGCTGTATTCGAATGGCAGCATGTCCTACTATGAGATCAAAGTAAGTTGA-AATT---TAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT
droMoj3	scaffold_6496:4944504-4944577 +		GGCAGCAGCAACTATACAGCAATGACAGCATGTCCTACTATGAAATCAAGGTAAGACGA-ACTG---AATTTGTTT-TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:9185082-9185251 -		GGCAGCAGCAGCTCTATAATAATGGCACCATGTCCTACTACGAGATTAAGGTATAATTT-TTTC---ATTTAATTT-GCACTATTATTACAAATATAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTAA-CCTAACTT-TCACATTTTAGTACCAATGCTGCGGCAAATCGGGACCCTTAGACTATGCCGCCAGCGGTCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GGCAGGGACAACTGTATCACCTGGGGGGCATGCCCTATTATGAGATAAAAGTAAGTAAT-ACTTTAGAATTTATTT-TA---------------A------------------------------------------------TAGAAAA-----------TTCATATT-------------------------------------------TTATGACACACCCCAAATGAACTTACTAATAATATAGTCTAGATAGCATTTATTAATCACTAAGACTGGGGAAAGCTATC---CATTTCATGTGATTAACGCAAATTAATTTCATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------TTGT-AT----TTTCGTAGTACCATTGCTGTGGACAAACAGGTCCTTCCAACTATCCGGACAGCGGCTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCCAACTATCCGGACAGCGGC..	24	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAACTATCCGGACAGC.....	20	1	1.00	1	0	1	0	0	0	0

droBip1

GGCAGGGACAAATCTTTCACCAGGGAAGCATGCCCTATTATGAAATAAAAGTAAGTTAT-ACTTTTGAT---------TAC-A-------------------------------------------------------TTTTA--------------------------ATCAAAAACCA-----------------------AAATATTTTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------CAAAATTAATTGC-CAAAAT----------------------GTTAGCATAG-------TGTATTA--AG--------------TTT-AATTACCAATTTTTTATTTTTCAAATT------------------------TTATGACAAT-TT----TTTTTTAGTACCATTGCTGTGGACAGACTGGTCCATCAAACTATCCAGACAGCGGCTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACC-----------------TTTTTATCTCTGTTTGCGTAAATATTAA-CCTATTTA----TCATTTAGTACCACTGCTGCGGGCAGACGGGGCCCGCGAACTATCCGGATAGTGGCCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGCAAGGACAGCTCTACCGAAAGAGCAGCATGTCCTACTACGAGATCCAGGTGAGTTTC-GGAG---GTACAGAAG-TATC-------------------CA------------AG------------------------------------------------------TCCGCCTTAAACACGTTTCAAGAATTGGAAATATCAC-----------------------------------------------------------AATAACTACAATTGGTAACAGCTCCTACGCAGTCTGTGT---------------------T-----------------------------------------TCCTAAAAATCACAAGAGAAAAATAACTTATTGAACTAATTTAATCAA------------------------------TTATAA---------GT---TTG--AG--------------TCA-ACTTGCAAAC-----------------CTTTTATCTCTGTTTACGCAAATATTAA-CCGAA-TC----GTTTTCAGTACCACTGCTGCGGCCAGACGGGGCCCTCAAACTACATAGATAGTGGGCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGCAGGGACAGCTCTATCATCAGAAAAGCATGTCCTACTATGAGATTAAGGTAAGTTACTGGGG---GCATT--TGAAGACCA-------------------------------------------------------TTCTG--------------------------ACCAGCCACCAAC-TATTTTAAGA--TAGTTAAAAAACATTATTCAC---------------------------------------------------------------GGT--------------------------------------------------TAAAGCCTTAAAGCT------AACA--GAACA--TTTTTTTTCAATTCCAAG-------------------GAA---------------AT----------------------ATTATCA--ATTAGCATT---TTG--ACAAATTTTATCGGAATTA-CC-TGCAAAC----------------GTTTTTATCTCTGTTTGCGTAAATATTAA-CCAAT-TT----TCGTTTAGTACCACTGCTGCGGGCAGACGGGGCCTACCAACTATCCGGATAGTGGCCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGCAGGGTCAGCTCTATCATCAGCGAAGCATGTCCTACTATGAGATTAAGGTGAGTTAT-GGCG---GAACA----------A-------------------------------------------------------GTTTA--------------------------AAAAGCCCCGAAC-TATTTTTA------------TAAAA----------------------------------------------------------------------------------TTACCTAGTGTGTGT---------------------TA---CTAATGCCTCAAAGTT------ATAAAAAAAAATT---GTTTAAATTTTCCAG-------------------GAA---------------AT----------------------ATTATCA--ATTAGTATT---TTG--TTTAATTTTATCGGAATTA---------CC-----------------TTTTTATCTCTGTTTGCGTAAATATTAA-CCATT-CT----TTGTTTAGTACCACTGCTGTGGGCAGTCGGGGCCTAACAACTATCCGGATAGTGGCCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGCAGGGACAGCTCTATCATCGCGGTAGTATGTCCTACTATGAGATCAAGGTGAGTTTT-GGCA---GGGGA-----------------------GTGGCCA------------AGCG-----CTTTTTTTGTATCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAT--TTCCCTTC-GATTAGATAAATGAAAGAAAATA---ATTTCCATTTTCACG-------------------AGAACTGAATTAAAGAAAAA----------------------GTTATCT--ACTAC-CTT---TTA--AGTCATTTTATCGCACATA-ATTTGCGAGC-----------------TTGCTATCTCTGTTGACCGAAATATTAA-CCTATTTATATATTATTTAGTATCATTGCTGTGGGCAGACAGGTCCCGCCGACTACCCGGATAGTGGTCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGCAGGGACAGCTTTATAATCAGAGCAGAATGCCTTACTATGAAATCAAGGTAAGTTTT-ACAA---GGGCAG-----------------------TGATTAGGTGAAGAGATATGTACAGAGATTTTTAGAGATCCAAAGTC--------------------------ACCAGTCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------CTAAAACCTCTAAGTT------ACAAATAAAAAGC---ATTTTCTTTTTCACG-------------------GGAATGGAATTAA-AGAAAT-----------------ATTATATTATCA--ATAGGCTTT---CTG--AGAAATTTTATCGGAATTAATTTGGCAAAC-----------------TTGCTATCTCTGTTTACGTAAATATTAA-CCTAT-TG----TCGTTTAGTATCACTGCTGTGGGCAGACGGGGCCCTCAAACTATCCGGATAGTGGCCT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGCAGGGTCAACTGTATCACCAGGGCAGCATGTCCTTCTACGAGATCAAGGTGAGTTAT-ATTA---GGCTAG-----------------------TGACT-------------TGTA-----C-------------------------T-----------ACGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTTCCAAG-------------------GAA---------------ATGTAAAATAATCAGGAATTTATCATTATCA--A-------T---TTG--TGACATTTTATCGGACCTA-ATTTGCAAAC-----------------CTGCTATCTATGTTTACGTAAATATTAA-CCGATTTC----CCGTTTAGTATCACTGCTGCGGACAGACGGGGCCCAAAGACTATCCGGACAGCGGCCT	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGCAGGGACAACTTTACCACTCGGACAGAATGTCCTACTTTGAGATCAAGGTGAGCTAT-GTAG---GGATCCTTG-GAACCTTCTCCATATATAGCAGACA------------TGAG-----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATTTTCACTTTCTCG-------------------GAAAAGGCATTAG-GAAAAT----------------------GGTATCA--GTTGGCTTT---TTTTTTGAAATTTTATCGAAATCA-TTTCGCAAGC-----------------TTGTTATCTTTGTTTAACCAAGTACTAA-ACGGCTTT----TCTTTTAGTATCACTGCTGCGGACAGACGGGGCCCGCAAACTATCCGGATAGTGGCCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................CAGAATGTCCTACTTTGAGATCAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGACAGACGGGGCCC.......................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCGGACAGACGGG...........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TGTCCTACTTTGAGATCAAGGTGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGCAAACTATCCGGATAGT.....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GACAGAATGTCCTACTTTGAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGGGACAACTTTACCACTCGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGACAGACGGGGCCC.......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGCAAACTATCCGGATAGTG....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGGACAGACGGGGCC........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TACCACTCGGACAGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGGGCCCGCAAACTATC.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AGAATGTCCTACTTTGAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TTACCACTCGGACAGAATGTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGTATCACTGCTGCGGA...................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AACTTTACCACTCGGACAGAATGTCCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGACAGACGGGGTT........................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGCAGGGACAACTTTACCACTCGGGCAGCATGTCCTACTTTGAGATCAAGGTGAGCTAT-GTAG---GGATCGTTG-GAACCATCT-CATATAAAGCAGACA------------TGAG-----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATTTTCACTTTCTCG-------------------GAAAAGGCATTAG-GAAAAT----------------------GCTATCA--G-------T---TTG--TGAAATTTTATCGAAAATA-TTTCGCAAGC-----------------TTGTTATCTTTGTTTAACCAAGTACTAA-CCGGCTTT----TCTCTTAGTATCACTGCTGCGGACAGACGGGGCCCGCGAACTATCCAGACAGTGGCCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......GACAACTTTACCACTCGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCACTGCTGCGGACA.................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGACAGACGGGGCCC.......................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TACCACTCGGGCAGCATGTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCGGACAGACGGGGCC........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GGACAACTTTACCACTCGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGAACTATCCAGACAGTGGC..	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................CCACTCGGGCAGCATGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTGCTGCGGACAGACGGG...........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........AACTTTACCACTCGGGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ACTTTACCACTCGGGCAGCATGTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

GGCAGGGACAACTTTACCACTCGGACAGCATGTCCTACTTTGAGATCAAGGTGAGCTAT-GTAG---GGATCGTTG-GAACCATCC-CATATAAAGCAGACA------------TGCG-----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATTTTCACTTTCTCG-------------------GAAAAGGCATTAG-GAAAAT----------------------GCTATCA--G-------T---TTG--TGAAATTTTATCGAAAATA-TTTCGCAAGC-----------------TTGTTATCTTTGTTTAACCAAGTACTAA-CCGTCTTT----TCTTTTAGTATCACTGCTGCGGACAGACGGGGCCCGCGAACTATCCGGACAGTGGCCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTATCCGGACAGTGGCCT	21	1	2.00	2	1	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGAACTATCCGGACAGTGGC..	23	1	2.00	2	0	1	0	1
............................CATGTCCTACTTTGAGATCAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.................................CCTACTTTGAGATCAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
....GGGACAACTTTACCACTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGCGGACAGACGGGGC.........................	21	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAACTATCCGGACAGTGGC..	21	1	1.00	1	0	0	1	0
........................ACAGCATGTCCTACTTTGAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
................CCACTCGGACAGCATGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0

droYak3

GGCAGGGACAACTATACCATTCGGGTAGCATGTCCTACTATGAGATCAAGGTGAGCTAT-GTAG---TCATCT--------------TAAACATA------------------------------------------------AGAAACATGAAACAAAAGGCGATCCTATTAAT---------------------------------------CTGA-----------------------------------------------------------------------------------------------------------------CAGAAACCTTGGA-----ATATAAAAAAGAACACT---ATTTTCACTTTTTCA-------------------GAAAGGAAATTAA----------------------------------TA--GATAGCCTT---ATG--TATGATTTTATCATAAGTA-TTTTGCAAGC-----------------TTGTTATCTTTGTTTAACGAAGTACTAA-CCGACTTT----TCGTTTAGTACCACTGCTGTGGCCAAACGGGGCCCGCAAACTATCCGGACAGTGGCCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................AAT---------------------------------------CTGA-----------------------------------------------------------------------------------------------------------------CAGAAACCTTGGA-----............................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
..CAGGGACAACTATACCATTCGGGTAGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGCTGTGGCCAAACGGGGCCCGC.....................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................AGCATGTCCTACTATGAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACTATCCGGACAGTGGC..	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............TATACCATTCGGGTAGCATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCCCGCAAACTATCCG...........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................GAGATCAAGGTGAGCTAT-GTAG---T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............TATACCATTCGGGTAGCATGTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAAACTATCCGGACAGT.....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GGCAGGGACAACTTTACCATTCGGGCAGCATGTCCTACTATGAGATCAAGGTGAGCTAT-GCAG---GGATCTTCA-AGACCTTCT-CATATATA------------------------------------------------AGGAACA-----------GCGATCTT-------------------------------------------ATCTGGCAGGGACCTAAGCC----GC-----------------------------------------------------------------------------------------------------TTGGC-----ATATAGTAAAGAACATT---GTTTGCACTTTTTCG-------------------GAAAGGGAATTAT-GAAAAT----------------------ATTATCA----------------G--TGCAATTTTATCGAAAGTG-TTTTGCAAGC-----------------CTTTTATCTTTGTTTA-----------A-CCAAC-TT----TCGTTTAGTATCACTGCTGTGGCCAGACAGGGCCCACAAACTACCCGGATAGCGGCCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................AGCATGTCCTACTATGAGATCAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TGCAATTTTATCGAAAGTG-TTTTGC........................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAACTACCCGGATAGCGGCCT	24	1	1.00	1	0	0	0	1	0	0	0
......GACAACTTTACCATTCGGGCAGCATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTGCTGTGGCCAGACAGGG..........................	23	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGTGGCCAGACAGGGCC........................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACAAACTACCCGGATAGCGGC..	25	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAACTACCCGGATAGCGGCCT	25	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCACTGCTGTGGCCAGACAG............................	23	1	1.00	1	1	0	0	0	0	0	0
........CAACTTTACCATTCGGGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGTGGCCAGACAGG...........................	18	1	1.00	1	1	0	0	0	0	0	0
........................GCAGCATGTCCTACTATGAGATCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
..............TACCATTCGGGCAGCATGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0

dp5

TCAG-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------CCAT-TC----CTTTTCAGTATCATTGCTGCGGAATGACTGGGCCCTCGAACTATCCGGACAGCGGCCT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGAACTATCCGGACAGCGGC..	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCCTCGAACTATCCGGACAGCGGC..	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGGAATGACTGGGCCC.......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCATTGCTGCGGAAT.................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCTCGAACTATCCGGACAGC.....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTATCCGGACAGCGGC..	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTGCTGCGGAATGACTGGGG.........................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGAATGACTGGGCCC.......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGCGGAATGACTGG...........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAACTATCCGGACAGCGGC..	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGCGGAATGACTGGGCCCTC.....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCATTGCTGCGGAATGACTG............................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCAG-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------CCAT-TC----CTTTTCAGTATCATTGCTGCGGAATGACTGGGCCCTCGAACTATCCGGACAGCGGCCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGCCCTCGAACTATCC............	24	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGGGCCCTCGAAC.................	18	1	2.00	2	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGGGCCCTCGAACTATCCGG..........	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTATCCGGACAGCGGCCT	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTGCTGCGGAATGACTGGGCCCT......................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACTATCCGGACAGCGGCCT	22	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACTATCCGGACAGCGGC..	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCTCGAACTATCCGGAC........	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAACTATCCGGACAGCGGCCT	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCTGCGGAATGACTGGGCCCT......................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAACTATCCGGACAGCGGCC.	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGGGCCCTCGAACTATCCGGAC........	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCGAACTATCCGGACAGC.....	21	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGAACTATCCGGACAGC.....	20	1	1.00	1	0	1	0	0	0	0

droWil2

GGCAAAATCAACTTTATCAAAGGGGTAGTATGTCCTATTATGAGATCAAGGTAAGTCAC-ACTTT-------------------C-----------------------------------------------------------------------------------------------------------------------------------------CCACAAATGCAT------------------------------------------------------------------------------------TCATTTTATAA-------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------ATTTCCC----TATTTTAGTATCATTGCTGTGGCATGACTGGATCTGTTAATTATCCTGACAGTGGATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGCATGACTGGATCT.......................	19	1	2.00	2	0	1	0	1	0
.........AACTTTATCAAAGGGGTAGTATGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCATTGCTGTGGCATGACTGGATC........................	26	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGACTGGATCTGTTAAT.................	21	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGGATCTGTTAATTATCCTGACA.......	27	1	1.00	1	0	1	0	0	0
...............ATCAAAGGGGTAGTATGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCATTGCTGTGGCATGACTG............................	24	1	1.00	1	0	1	0	0	0
...............ATCAAAGGGGTAGTATGTCCTATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATCATTGCTGTGGCAT.................................	19	1	1.00	1	0	0	0	1	0
........................................................CAC-ACTTT-------------------C-----------------------------------------------------------------------------------------------------------------------------------------CCACAAATGCAT------------------------------------------------------------------------------------...........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGGCATGACTGGATCTGT.....................	22	1	1.00	1	0	0	0	1	0
.................CAAAGGGGTAGTATGTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTATCCTGACAGTGGATT	22	1	1.00	1	0	1	0	0	0
..........................AGTATGTCCTATTATGAGATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0

droVir3

GGCAGGAGCAGCTGTATTCGAATGGCAGCATGTCCTACTATGAGATCAAAGTAAGTTGA-AATT---TAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...AGGAGCAGCTGTATTCGAATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TGTATTCGAATGGCAGCATGTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........AGCTGTATTCGAATGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGCAGCAGCAACTATACAGCAATGACAGCATGTCCTACTATGAAATCAAGGTAAGACGA-ACTG---AATTTGTTT-TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................GACAGCATGTCCTACTATGAAATCAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0

droGri2

GGCAGCAGCAGCTCTATAATAATGGCACCATGTCCTACTACGAGATTAAGGTATAATTT-TTTC---ATTTAATTT-GCACTATTATTACAAATATAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTAA-CCTAACTT-TCACATTTTAGTACCAATGCTGCGGCAAATCGGGACCCTTAGACTATGCCGCCAGCGGTCT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................GATTAAGGTATAATTT-TG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	1	0

dan_1757

scaffold_13266:3186598-3186769 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads