dan_1752

exon [dana_GLEANR_12688:3]; exon [dana_GLEANR_12688:2]; CDS [Dana\GF12670-cds]; CDS [Dana\GF12670-cds]; intron [Dana\GF12670-in]

##################################################---------------------------------------------------------################################################## TTCAACTAGAAGCCACCCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCGCCGAATGGCCGAGTTGACTCGCCGCTGTCGCCAGTCAACAGGATGGAGGAGCTGCTCCGCACGGAGAGCTCCCGGAGGAGGCCGTCGCTGC ************************************************........(((.(((..((.(((((((((....))))..)))))))...)))..)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V106 head	V039 embryo	V105 male body	V055 head
....................................................................GAATGGCCGAGTTGACTCGCC....................................................................	21	0	1	2.00	2	0	0	2	0	0	0
.................................................................................GACTCGCCGCTGTCGCCAGT........................................................	20	0	1	2.00	2	0	2	0	0	0	0
...............................................................................................GCCAGTCAACAGGATGGAGGAGC.......................................	23	0	1	2.00	2	1	0	0	1	0	0
..................................................................................................AGTAAACAGGATGGAGGA.........................................	18	1	1	1.00	1	0	0	1	0	0	0
...............CCCTCAATGACTGCCCAAGTGC........................................................................................................................	22	3	1	1.00	1	0	0	0	1	0	0
..........................................................................................CTGTCGCCAGTCAACAGGATGGAG...........................................	24	0	1	1.00	1	0	1	0	0	0	0
.......................................................................................................ACAGGATGGAGGAGCTGCTCCGCACGGAG.........................	29	0	1	1.00	1	0	0	1	0	0	0
...............................................................................TTGACTCGCCGCTGTCGCCAG.........................................................	21	0	1	1.00	1	0	0	1	0	0	0
................................................CCGTGGGCCGCTGGGGCGCCGAAT.....................................................................................	24	0	1	1.00	1	1	0	0	0	0	0
................................ATTGGCTATGTGCCCACCGTGGGC.....................................................................................................	24	1	1	1.00	1	1	0	0	0	0	0
.........................................................................................................AGGATGGAGGAGCTGCTC..................................	18	0	1	1.00	1	1	0	0	0	0	0
...........GCCACCCTCAATGACTGCGAAAGT..........................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0
..............................................CACCGTGGGCCGCTGGGGCGCC.........................................................................................	22	0	1	1.00	1	1	0	0	0	0	0
..........................................................................................................GGATGGAGGAGCTGCTCCGCACGGAGA........................	27	0	1	1.00	1	1	0	0	0	0	0
...............................................................................................GTCAGTCAACAGGATGGAGGAGC.......................................	23	1	1	1.00	1	1	0	0	0	0	0
....................................................................................TCGCCGCTGTCGCCAGTCAACAGGAT...............................................	26	0	1	1.00	1	0	1	0	0	0	0
...AACTAGAAGCCACCCTCAATG.....................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
..........AGCCACCCTCAATGACTGCGA..............................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
...................CAATGACTGCGAAAGTGGCT......................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
...............................................................................................GCCAGTCAACAGGATGGAGGA.........................................	21	0	1	1.00	1	0	0	1	0	0	0
...........................................................................................................GACGGAGGAGCTGCTCCGCACGGAGA........................	26	1	1	1.00	1	1	0	0	0	0	0
......TGGAAGCCACCCTCAATGACTGC................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0	0
..............................................................................................................GGAGGAGCTGCTCCGCACGGAGAG.......................	24	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................................AGGATGGAGGAGCTGCTCCGC...............................	21	0	1	1.00	1	0	0	1	0	0	0
.....................................................................................................TAACAGGATGGAGGAGCTGCTC..................................	22	1	1	1.00	1	1	0	0	0	0	0
.........................................................GCTGGGGCGCCGAATGGCCGAGTTGACT........................................................................	28	0	1	1.00	1	0	0	0	0	1	0
.....................................CTATGTGCCCACCGTGGGCCGCTGGGGC............................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
.................................................CGTGGGCCGCTGGGGCGCCGAATG....................................................................................	24	0	1	1.00	1	0	0	1	0	0	0
...................................................................CGAATGGCCGAGTTGACTCGC.....................................................................	21	0	1	1.00	1	1	0	0	0	0	0
.......AGAAGCCACCCTCAATGACTGC................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0
....................................................................................................................GCTGCTCCGCACGGAGAGCTCCCGGA...............	26	0	1	1.00	1	0	0	1	0	0	0
..............ACCCTCAATGACTGCGAAAGT..........................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
.................................................................................................CAGTCAACAGGATGGAGGAGCTGCTC..................................	26	0	1	1.00	1	0	1	0	0	0	0
.............................................CCACCGTGGGCCGCTGGGG.............................................................................................	19	0	1	1.00	1	1	0	0	0	0	0
................................................................................................CCAGTCAACAGGATGGAGGA.........................................	20	0	1	1.00	1	0	0	0	0	1	0
...................................................................CGAATGGCCGAGTTGACT........................................................................	18	0	1	1.00	1	0	0	0	0	0	1
..............ACCCTCAATGACTGCGAAAGTGGCT......................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................GCCCCCGGAGGAGGCCGTCGC...	21	1	1	1.00	1	1	0	0	0	0	0
....................................GCTATGTGCCCACCGTGGGCCGCTGGGGC............................................................................................	29	0	1	1.00	1	1	0	0	0	0	0
............................................................................................GCCGCCAATCGACAGGATGGA............................................	21	3	4	0.25	1	0	0	0	0	0	1
...................................................................................................................................GAGCTCCCGGGGGAGGCG........	18	2	6	0.17	1	0	0	0	0	0	1
......CAGAACGCACCCTCAATGAC...................................................................................................................................	20	3	9	0.11	1	0	0	0	1	0	0
...................................................TGGGGCGCTGGGGCGCGG........................................................................................	18	2	10	0.10	1	0	0	0	0	0	1
..................TCTATGATTGCGAAGGTGG........................................................................................................................	19	3	15	0.07	1	0	0	0	0	1	0
............................................................................................................AAAGAGGAGCAGCTCCGCAC.............................	20	3	20	0.05	1	1	0	0	0	0	0

AAGTTGATCTTCGGTGGGAGTTACTGACGCTTTCACCGATACACGGGTGGCACCCGGCGACCCCGCGGCTTACCGGCTCAACTGAGCGGCGACAGCGGTCAGTTGTCCTACCTCCTCGACGAGGCGTGCCTCTCGAGGGCCTCCTCCGGCAGCGACG ************************************************........(((.(((..((.(((((((((....))))..)))))))...)))..)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	V039 embryo
........................TGACGCTTTCCTCGATACAG.................................................................................................................	20	3	6	0.17	1	1	0
..TTTGATATTCGGTGGAAGTT.......................................................................................................................................	20	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13266:3084175-3084331 +	dan_1752	TTCAACTAGAAGCC---ACCCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCGCCGAATGGCCGAGTTGACTCGCCGCTGTCG------------CCAGT------C-----------------------A---ACA---GGATGGAGGAGCTGCTCCGCACGGAGAGCTC-----------C------CGGAGGAGGC------------CGTCGCTGC
droBip1	scf7180000396427:1549039-1549195 +		TTCAACTAGAAGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCGCCGAATGGCCGAGTTGACTCGCCGCTGCCG------------CCAGT------C--------------------------TACA---GGATGGAGGAGCTGCTCCGCAAGGAGAGCTC-----------C------CGGAGGAGGC------------CGCCGCTGC
droKik1	scf7180000302471:648812-648971 -		TTCAACTAGAGGCC---ACGCTCAATGACTGTGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGCTGCCA------------CCA-C------C-------------------AGTCGTCGACG---GGATGGAGGTGGAGCGGTC----------AACTC-------GCTTG---TCGAGGAGGC------------CGCTGCTGC
droFic1	scf7180000454039:1488710-1488866 -		TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGATGGGGTGCCGAATGGCCGAGTTGACTCGCCGCTGCCA------------CCCAC------C-----------------------ATCGACG---GGAGGGGGGCGTGGCCCGGCC--------TCC---------AGTGG---AGGAGGGGGC------------CATCGCCGC
droEle1	scf7180000491201:435661-435817 -		TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAGTGGCCGAGTTGACTCGCCGCTGCCA------------CCAGC------C-----------------------ACCGACG---GGATGGGGGAGCGGCTCCACC--------TCC-AGC-----AC------TGGAGGGGGC------------CGCTGTCGC
droRho1	scf7180000777843:56458-56614 +		TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGCTGCCA------------CCAGC------C-----------------------ACCGACG---GGATGGGGGAGCGGCTCCTCC--------------------ACT------GGAGGAGCCCGCTG------CCGCCGCCGC
droBia1	scf7180000302291:3116278-3116437 +		TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCA------------CCAGC------C-----------------------ACCGACG---GGATGGGGGAGTGGCCCCTCC--------------------GCGCGC---GGAGGAGGTCGCTC------CCGCCGCCGC
droTak1	scf7180000415159:246424-246577 +		TTCAACTAGACGCC---ACGCTCAATGATTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCG------------CCAGC------C-----------------------ACCGACG---GGATGGGGGAGTGGCCCCTCC--------------------GATCG---CGGAGGAGGT------------CGCCCCCGG
droEug1	scf7180000409474:1777406-1777556 +		TTCAACTAGACGCC---ACCCTCAATGACTGTGAAAGTGGCTATGTGCCCACCGTGGGCCGTTGGGGCTCGGAGTGGCCGAGTTGACTCGCCGCTGCTA------------CCAGC------C-----------------------ACCTACG---GGATGGGGGAGTGGCCTCTCC--------------------ATT------GGAGGAGGG------------GGCCACTGC
dm3	chr2R:16198693-16198852 -		TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCA------------CCAGT------C-----------------------ACCGACGGGAGGATGGGGGAGTGGCCTCTCC--------------------GGATGAGGATGAAGAGGC------------CACTGCCGC
droSim2	2r:16778603-16778762 -	dsi_27572	TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCA------------CCAGT------C-----------------------ACCGACGGGGGGATGGGGGAGTGGTCTCTCC--------------------GGATGAGGATGAGGAGGC------------CACTGCCGC
droSec2	scaffold_1:13764544-13764703 -	dse_737	TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCG------------CCAGT------C-----------------------ACCGACGGGGGGATGGGGGAGTGGCCTCTCC--------------------GGATGAGGATGAGGAGGC------------CGCTGCCGC
droYak3	2R:13004133-13004289 +	dya_564	TTCAACTAGACGCC---ACACTCAATGATTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCG------------CCAGT------C-----------------------ACCGACG---GGATGGGGGAGTGGCCTCACC--------------------AGA------TGATGAGGCCACTG------CCGCCGCCGC
droEre2	scaffold_4845:10349912-10350068 -		TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCG------------CCAGT------C-----------------------ACCGACG---GGATGGGGGAGCGGCCTCTCC--------------------GGATGAGGATGAGGAGGC------------CGCTGCCGT
dp5	3:9855966-9856110 -		TTCAACTAGAAGCT---ATAATCAATGACTGCGAAAGTGGCTACGTGCCCTCCGTGGGCCGCTGGGGCTCCGAGTGGCCAAGTTGACTCGCCGCTGCCC------------ACGGC------C-----------------------------A---GGATGGAGCAGCATCGATCCC--------------------CGT------CGATGGGGA------------TGTCGATGC
droPer2	scaffold_4:5173427-5173571 -		TTCAACTAGAAGCT---ATAATCAATGACTGCGAAAGTGGCTACGTGCCCTCCGTGGGCCGCTGGGGCTCCGAGTGGCCAAGTTGACTCGCCGCTGCCC------------ACGGC------C-----------------------------A---GGATGGAGCAGCATCGATCCC--------------------CGT------CGATGGGGA------------TGTCGATGC
droWil2	scf2_1100000004822:1346477-1346615 -	dwi_2167	TTCAACTAGAAGCA---ACATTCAATGACTGTGAAAGTGGCTATGTGCCGACCGTGGGCCGCTGGGGCTCCGAGTGGCCAAGTTGACTCGCCGCAGGTG---------------AA------C-----------------------AGCAACA---GGATGGAGCAGCATC-----------------------------------GGGTGAAGC------------AGACAATGC
droVir3	scaffold_12875:11066050-11066224 +		TTCAACTAGAAGCA---ACATTCAATGACTGTGAAAGTGGCTACGTGCCCACCGTGGGCCGCTGGGGAGCCGAATGGCCAAGCTGACTCGCCGCAGGAG------------TTGGC------C-----------------------ATGGCCG---GGATGGAGCGGCGCC---GCC--------GCCGAGCTATGCCAGCGT---TGAGGATGGCATTTGCGGCGATGCTGCTGC
droMoj3	scaffold_6496:15864791-15864950 -		TTCAACTAGAAGCA---ACATTCAATGACTGTGAAAGTGGCTACGTGCCCACCGTGGGCCGTTGGGGTGCCGAATGGCCGAGCTGACTCGCCGCTGCAG------------CCAGC------C-----------------------A---------GGATGGTGCGGCAGCGACGCC-----------CAGCTATGCCGTCGACGTTGATGATGT------------CGACGACGA
droGri2	scaffold_15245:13674467-13674647 -		TTCAACTAGAAGCCACCACAATCAATGACTGTGAAAGTGGCTATGTGCCCACCGTGGGCCGATGGGGTGCCGAATGGCCAAGCTGACTCGCCGCTGGCAACGGTGCCGGTGCCGGTCACGGCCACGATGTGGCAGCAATGCCAGCCGACGACG--------------------T-----------------------CAACGATGATGATGACGT------------CGGCATTGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TTCAACTAGAAGCC---ACCCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCGCCGAATGGCCGAGTTGACTCGCCGCTGTCG------------CCAGT------C-----------------------A---ACA---GGATGGAGGAGCTGCTCCGCACGGAGAGCTC-----------C------CGGAGGAGGC------------CGTCGCTGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................GAATGGCCGAGTTGACTCGCC................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
....................................................................................GACTCGCCGCTGTCG------------CCAGT------..................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..................................................................................................G------------CCAGT------C-----------------------A---ACA---GGATGGAGGAGC....................................................................	23	1	2.00	2	0	1	1	0	0	0
.............................................................................................CTGTCG------------CCAGT------C-----------------------A---ACA---GGATGGAG........................................................................	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................ACA---GGATGGAGGAGCTGCTCCGCACGGAG......................................................	29	1	1.00	1	0	0	0	0	0	1
..................................................................................TTGACTCGCCGCTGTCG------------CCAG.........................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................................................CCGTGGGCCGCTGGGGCGCCGAAT.................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................A---GGATGGAGGAGCTGCTC...............................................................	18	1	1.00	1	0	1	0	0	0	0
...........GCC---ACCCTCAATGACTGCGAAAGT......................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................................................CACCGTGGGCCGCTGGGGCGCC.....................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................GGATGGAGGAGCTGCTCCGCACGGAGA.....................................................	27	1	1.00	1	0	1	0	0	0	0
.......................................................................................TCGCCGCTGTCG------------CCAGT------C-----------------------A---ACA---GGAT............................................................................	26	1	1.00	1	1	0	0	0	0	0
...AACTAGAAGCC---ACCCTCAATG.................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........AGCC---ACCCTCAATGACTGCGA..........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................CAATGACTGCGAAAGTGGCT..................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..................................................................................................G------------CCAGT------C-----------------------A---ACA---GGATGGAGGA......................................................................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................GGAGGAGCTGCTCCGCACGGAGAG....................................................	24	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................A---GGATGGAGGAGCTGCTCCGC............................................................	21	1	1.00	1	0	0	0	0	0	1
............................................................GCTGGGGCGCCGAATGGCCGAGTTGACT....................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
........................................CTATGTGCCCACCGTGGGCCGCTGGGGC........................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
....................................................CGTGGGCCGCTGGGGCGCCGAATG................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................CGAATGGCCGAGTTGACTCGC.................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.......AGAAGCC---ACCCTCAATGACTGC............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................GCTGCTCCGCACGGAGAGCTC-----------C------CGGA...........................	26	1	1.00	1	0	0	0	0	0	1
.................ACCCTCAATGACTGCGAAAGT......................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................CAGT------C-----------------------A---ACA---GGATGGAGGAGCTGCTC...............................................................	26	1	1.00	1	1	0	0	0	0	0
................................................CCACCGTGGGCCGCTGGGG.........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................CCAGT------C-----------------------A---ACA---GGATGGAGGA......................................................................	20	1	1.00	1	0	0	0	0	1	0
......................................................................CGAATGGCCGAGTTGACT....................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
.................ACCCTCAATGACTGCGAAAGTGGCT..................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................GCTATGTGCCCACCGTGGGCCGCTGGGGC........................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0

droBip1

TTCAACTAGAAGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCGCCGAATGGCCGAGTTGACTCGCCGCTGCCG------------CCAGT------C--------------------------TACA---GGATGGAGGAGCTGCTCCGCAAGGAGAGCTC-----------C------CGGAGGAGGC------------CGCCGCTGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTCAACTAGAGGCC---ACGCTCAATGACTGTGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGCTGCCA------------CCA-C------C-------------------AGTCGTCGACG---GGATGGAGGTGGAGCGGTC----------AACTC-------GCTTG---TCGAGGAGGC------------CGCTGCTGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGATGGGGTGCCGAATGGCCGAGTTGACTCGCCGCTGCCA------------CCCAC------C-----------------------ATCGACG---GGAGGGGGGCGTGGCCCGGCC--------TCC---------AGTGG---AGGAGGGGGC------------CATCGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAGTGGCCGAGTTGACTCGCCGCTGCCA------------CCAGC------C-----------------------ACCGACG---GGATGGGGGAGCGGCTCCACC--------TCC-AGC-----AC------TGGAGGGGGC------------CGCTGTCGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGCTGCCA------------CCAGC------C-----------------------ACCGACG---GGATGGGGGAGCGGCTCCTCC--------------------ACT------GGAGGAGCCCGCTG------CCGCCGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCA------------CCAGC------C-----------------------ACCGACG---GGATGGGGGAGTGGCCCCTCC--------------------GCGCGC---GGAGGAGGTCGCTC------CCGCCGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTCAACTAGACGCC---ACGCTCAATGATTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCG------------CCAGC------C-----------------------ACCGACG---GGATGGGGGAGTGGCCCCTCC--------------------GATCG---CGGAGGAGGT------------CGCCCCCGG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTCAACTAGACGCC---ACCCTCAATGACTGTGAAAGTGGCTATGTGCCCACCGTGGGCCGTTGGGGCTCGGAGTGGCCGAGTTGACTCGCCGCTGCTA------------CCAGC------C-----------------------ACCTACG---GGATGGGGGAGTGGCCTCTCC--------------------ATT------GGAGGAGGG------------GGCCACTGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCA------------CCAGT------C-----------------------ACCGACGGGAGGATGGGGGAGTGGCCTCTCC--------------------GGATGAGGATGAAGAGGC------------CACTGCCGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................ACGGGAGGATGGGGGAGTGGCC................................................................	22	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................GGGGAGTGGCCTCTCC--------------------GGATGAG................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8
.....................................................................................................................................................GACGGGAGGATGGGGGAGTGGC.................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................ACGGGAGGATGGGGGAGTGG..................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................ACGGGAGGATGGGGGAGT....................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................GAGGATGGGGGAGTGGCCT...............................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................CGCTGGGGCTCCGAATGGCCGA...........................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GGGAGGATGGGGGAGTGGC.................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................AGGATGGGGGAGTGGCCTCTC............................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................CGACGGGAGGATGGGGGAGTGGC.................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CTCC--------------------GGATGAGGATGAAGAGGC------------.........	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................GGAGGATGGGGGAGTGGC.................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CTCTCC--------------------GGATGAGGATGAAGAGGC------------.........	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CGGGAGGATGGGGGAGTG...................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................CTCC--------------------GGATGAGGATGAAGA........................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................GATGAGGATGAAGAGGC------------CACTGCCG.	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.......................................................................................................................................................CGGGAGGATGGGGGAGTGG..................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................ACGGGAGGATGGGGGAGTGGCCT...............................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
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....................................................................................................................................................CGACGGGAGGATGGGGGAGT....................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
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...........................................................................................................................................................AGGATGGGGGAGTGGCCT...............................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................ACGGGAGGATGGGGGAGTGGC.................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TGCCA------------CCAGT------C-----------------------ACCGACGGGAG...............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................ACGGGAGGATGGGGGAGTGGCCTC..............................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................GAGGATGGGGGAGTGGCC................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................GGATGAGGATGAAGAGGC------------.........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................A------------CCAGT------C-----------------------ACCGACGGGAGGAT............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................AGGATGGGGGAGTGGCCTCT.............................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................ATGAGGATGAAGAGGC------------C........	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GGATGAAGAGGC------------CACTGC...	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CTCAATGACTGCGAAAGTGGCTA.................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................C-----------------------ACCGACGGGAGGATGGGGG.......................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ACGCTCAATGACTGCGAA.........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................CTGGGGCTCCGAATGGCCG............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCA------------CCAGT------C-----------------------ACCGACGGGGGGATGGGGGAGTGGTCTCTCC--------------------GGATGAGGATGAGGAGGC------------CACTGCCGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........CGCC---ACGCTCAATGACTGC............................................................................................................................................................................................................	19	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CC--------------------GGATGAGGATGAGGAGGC------------CA.......	22	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CTCC--------------------GGATGAGGATGAGGAGGC------------.........	22	1	4.00	4	0	0	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................AGTTGACTCGCCGTTGCC..........................................................................................................................................	18	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................C--------------------GGATGAGGATGAGGAGGC------------.........	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ACGCC---ACGCTCAATGACTGC............................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CC--------------------GGATGAGGATGAGGAGGC------------.........	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........CGCC---ACGCTCAATGACTG.............................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GCTCAATGACTGCGAAAGT......................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........GACGCC---ACGCTCAATGACTGC............................................................................................................................................................................................................	21	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AAGTGGCTATGTGCCCACCGTGGGCC................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................CTGGGGCTCCGAATGGCC.............................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................C--------------------GGATGAGGATGAGGAGGC------------C........	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................ACGGGGGGATGGGGGAGTGGTC................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................GATGAGGATGAGGAGGC------------C........	18	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................TGTGCCCACCGTGGGCCGCTGGGGCTCC.....................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TATGTGCCCACCGTGGGCCGCTGGGGC........................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................CCGAATGGCCGAGTTGACTCGCC................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....CTAGACGCC---ACGCTCAATGACTG.............................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................GCTCCGAATGGCCGAGTTGACTCGC.................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................CGCTGGGGCTCCGAATGGCCGAGTTGACT....................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ATGTGCCCACCGTGGGCCGCTGGGGC........................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................C--------------------GGATGAGGATGAGGAGGC------------CAC......	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CTCC--------------------GGATGAGGATGAGG.........................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATGACTGCGAAAGTGGCTATGTGCCCACC.......................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CGGGGGGATGGGGGAGTG...................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................GAATGGCCGAGTTGACTCGC.................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................GAGGATGAGGAGGC------------CACTGC...	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................CC--------------------GGATGAGGATGAGGAGGC------------CACTGC...	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GGTCTCTCC--------------------GGATGAGGATGAGGAGGC------------.........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................GGTCTCTCC--------------------GGATGAGGATG............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................AGTGGTCTCTCC--------------------GGATGAGGATGA...........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GGATGAGGATGAGGAGGC------------CACTGC...	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.TCAACTAGACGCC---ACGCTCAATGACTGC............................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GTTGACTCGCCGTTGCCA------------CCAGT------C-----------------------..........................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GGATGAGGATGAGGAGGC------------C........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................ATGAGGATGAGGAGGC------------CACTGC...	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ACTAGACGCC---ACGCTCAATGACTG.............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TCTCC--------------------GGATGAGGATGAGGAGGC------------.........	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TAGACGCC---ACGCTCAATGACTGC............................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ATGTGCCCACCGTGGGCCGCTGGGGCTC......................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................CGCTGGGGCTCCGAATGGC..............................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AGGATGAGGAGGC------------CACTGCCGC	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................GCTCAATGACTGCGAAAGG......................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ACTAGACGCC---ACGCTCAATGACTGC............................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGACGCC---ACGCTCAATGACTGC............................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AATGGCCGAGTTGACTCGCC................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CTCC--------------------GGATGAGGATGAGGA........................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AAAGTGGCTATGTGC............................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................ACGGGGGGATGGGGGAGTCTG.................................................................	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCG------------CCAGT------C-----------------------ACCGACGGGGGGATGGGGGAGTGGCCTCTCC--------------------GGATGAGGATGAGGAGGC------------CGCTGCCGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................CTCC--------------------GGATGAGGATGAGGA........................	19	1	6.00	6	0	1	5	0
.....................................................................................................................................................GACGGGGGGATGGGGGAGTGG..................................................................	21	1	3.00	3	0	0	3	0
..........................................................................................................................................................GGGGATGGGGGAGTGGCCT...............................................................	19	1	3.00	3	0	0	3	0
...........................................................................................................................................................GGGATGGGGGAGTGGCCTCTCC--------------------.......................................	22	1	2.00	2	0	1	1	0
...........................................................................................................................................................GGGATGGGGGAGTGGCCT...............................................................	18	1	2.00	2	0	0	2	0
...........................................................CGCTGGGGCTCCGAATGGCCG............................................................................................................................................................	21	1	2.00	2	0	0	2	0
................................................................................................................CAGT------C-----------------------ACCGACGGGGGGATGGG.........................................................................	22	1	2.00	2	0	0	2	0
......................................................................................................................................................ACGGGGGGATGGGGGAGTG...................................................................	19	1	2.00	2	0	0	2	0
...........................................................................................................................................................GGGATGGGGGAGTGGCCTC..............................................................	19	1	2.00	2	0	0	2	0
..........................................................................................................................C-----------------------ACCGACGGGGGGATGGG.........................................................................	18	1	2.00	2	0	0	2	0
....................................................................................................................................................CGACGGGGGGATGGGGGAGTGGCCT...............................................................	25	1	2.00	2	0	0	2	0
..................................................................................................................GT------C-----------------------ACCGACGGGGGGATGGG.........................................................................	20	1	2.00	2	0	0	2	0
........................................................................AATGGCCGAGTTGACTCGCC................................................................................................................................................	20	1	1.00	1	0	0	1	0
.....CTAGACGCC---ACGCTCAATGA................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.............................................................................................................................................................GATGGGGGAGTGGCCTCTC............................................................	19	1	1.00	1	0	0	1	0
.......................................................................................................................................................CGGGGGGATGGGGGAGTGGC.................................................................	20	1	1.00	1	0	0	1	0
...................GCTCAATGACTGCGAAAGTGG....................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
...............................................................GGGGCTCCGAATGGCCGAGTTGACTCGC.................................................................................................................................................	28	1	1.00	1	0	0	1	0
........................................................................AATGGCCGAGTTGACTCGC.................................................................................................................................................	19	1	1.00	1	0	0	1	0
..........................................................................................................................C-----------------------ACCGACGGGGGGATGGGGG.......................................................................	20	1	1.00	1	0	0	1	0
.............................................TGCCCACCGTGGGCCGCTGGGGCTCCG....................................................................................................................................................................	27	1	1.00	1	0	0	1	0
.............................................................................................................................................................................CTCC--------------------GGATGAGGATGAGGAGGC------------CGCTGCC..	29	1	1.00	1	0	0	1	0
.........................................TATGTGCCCACCGTGGGCCGCTGGGG.........................................................................................................................................................................	26	1	1.00	1	0	0	1	0
..................................................................................................................GT------C-----------------------ACCGACGGGGGGATGGGGG.......................................................................	22	1	1.00	1	0	0	0	1
..............................................................................................................................................................ATGGGGGAGTGGCCTCTCC--------------------GGAT...................................	23	1	1.00	1	0	0	1	0
..........................................................CCGCTGGGGCTCCGAATGGCCGA...........................................................................................................................................................	23	1	1.00	1	0	0	1	0
....................................................................................................................................................CGACGGGGGGATGGGGGAGTGGC.................................................................	23	1	1.00	1	0	0	1	0
.............................................................................................................................................................GATGGGGGAGTGGCCTCTCC--------------------.......................................	20	1	1.00	1	0	0	1	0
......................................................................................................................................................................GTGGCCTCTCC--------------------GGATGAGGATGAGGA........................	26	1	1.00	1	0	0	1	0
...............................................................GGGGCTCCGAATGGCCGAGTTGACT....................................................................................................................................................	25	1	1.00	1	0	1	0	0
.....................................................................................................................................................................AGTGGCCTCTCC--------------------GGATGAGGAAA............................	23	1	1.00	1	0	0	0	1
...................................................CCGTGGGCCGCTGGGGCTCCGAATGGCCG............................................................................................................................................................	29	1	1.00	1	0	0	1	0
..........CGCC---ACGCTCAATGACTGC............................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
............................................................................................................................................................................TCTCC--------------------GGATGAGGATGAGGA........................	20	1	1.00	1	0	0	1	0
.......................................................................................................................................................CGGGGGGATGGGGGAGTGGCCT...............................................................	22	1	1.00	1	0	0	1	0
.......................................................................................................................................................CGGGGGGATGGGGGAGTG...................................................................	18	1	1.00	1	0	0	1	0
.......................................................................GAATGGCCGAGTTGACTCGC.................................................................................................................................................	20	1	1.00	1	0	0	1	0
..................................................................................TTGACTCGCCGTTGCCG------------CC...........................................................................................................................	19	1	1.00	1	0	0	1	0
........................ATGACTGCGAAAGTGGCTATGTGCCCACC.......................................................................................................................................................................................	29	1	1.00	1	0	0	1	0
.................ACGCTCAATGACTGCGAAAGTGGC...................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..CAACTAGACGCC---ACGCTCAAT..................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.....CTAGACGCC---ACGCTCAATGACTG.............................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
........GACGCC---ACGCTCAATGACT..............................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...........................................................................................................................................................................CTCTCC--------------------GGATGAGGATGAG..........................	19	1	1.00	1	0	0	1	0
..........................................................................................................................C-----------------------ACCGACGGGGGGATGGGGGA......................................................................	21	1	1.00	1	0	0	1	0
.........................................................................ATGGCCGAGTTGACTCGC.................................................................................................................................................	18	1	1.00	1	0	0	1	0
........GACGCC---ACGCTCAATGACTGCGA..........................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...............................................................................................................................................................................CC--------------------GGATGAGGATGAGGAGGC------------.........	20	1	1.00	1	0	0	1	0
.........................TGACTGCGAAAGTGGCTATGTGCCC..........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
................................................................................AGTTGACTCGCCGTTGCCG------------.............................................................................................................................	19	1	1.00	1	0	0	1	0
.............................................TGCCCACCGTGGGCCGCTGG...........................................................................................................................................................................	20	1	1.00	1	1	0	0	0
.................................................................................................CG------------CCAGT------C-----------------------ACCGACGGGGG...............................................................................	19	1	1.00	1	0	0	1	0
.............................................TGCCCACCGTGGGCCGCTGGGG.........................................................................................................................................................................	22	1	1.00	1	0	0	1	0
........GACGCC---ACGCTCAATGACTGCGAA.........................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..........................................................................................................................C-----------------------ACCGACGGGGGGATGGGGGAGTG...................................................................	24	1	1.00	1	0	0	1	0
................................................................................AGTTGACTCGCCGTTGCCG------------CCA..........................................................................................................................	22	1	1.00	1	0	1	0	0
.............................................................................................................................................................GATGGGGGAGTGGCCTCTCC--------------------GGATGA.................................	26	1	1.00	1	0	0	1	0
.................................................................................GTTGACTCGCCGTTGCCG------------CC...........................................................................................................................	20	1	1.00	1	0	0	1	0
.....CTAGACGCC---ACGCTCAATGACT..............................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.....................................................................................................................................................GACGGGGGGATGGGGGAGTG...................................................................	20	1	1.00	1	0	0	1	0
..CAACTAGACGCC---ACGCTC.....................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
............................................................................................................................................................GGATGGGGGAGTGGCCTCTC............................................................	20	1	1.00	1	0	0	1	0
.....................................................................................................................................................GACGGGGGGATGGGGGAGTGGC.................................................................	22	1	1.00	1	0	0	1	0
........................................................................................CGCCGTTGCCG------------CCAGT------C-----------------------AC........................................................................................	19	1	1.00	1	0	0	1	0
.............................................................................................................................................................................CTCC--------------------GGATGAGGATGAGGAGGC------------.........	22	1	1.00	1	0	0	0	1
.......................................................................................................................................................CGGGGGGATGGGGGAGTGG..................................................................	19	1	1.00	1	0	0	1	0
......................................................................................................................................................ACGGGGGGATGGGGGAGTGGC.................................................................	21	1	1.00	1	0	0	0	1
.....................................................................................................................................................................AGTGGCCTCTCC--------------------GGATGAGGATGAGGA........................	27	1	1.00	1	0	0	1	0
..............................................................................................................................................................ATGGGGGAGTGGCCTCTCC--------------------GGATGAGG...............................	27	1	1.00	1	0	0	1	0
..................................................................................................................GT------C-----------------------ACCGACGGGGGGATGGGGGA......................................................................	23	1	1.00	1	0	0	1	0
...............................................................GGGGCTCCGAATGGCCGAGTTGAC.....................................................................................................................................................	24	1	1.00	1	0	0	1	0
...............................................................................................................CCAGT------C-----------------------ACCGACGGGGGGATGGGG........................................................................	24	1	1.00	1	0	1	0	0
.....................................................................................................................................................................AGTGGCCTCTCC--------------------GGATGAGG...............................	20	1	1.00	1	0	0	1	0
................................................................................................................................................................................C--------------------GGATGAGGATGAGGAGGC------------.........	19	2	0.50	1	0	1	0	0
.....................................................................................................................................................................................................GGATGAGGATGAGGAGGC------------.........	18	4	0.25	1	0	0	1	0

droYak3

TTCAACTAGACGCC---ACACTCAATGATTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCG------------CCAGT------C-----------------------ACCGACG---GGATGGGGGAGTGGCCTCACC--------------------AGA------TGATGAGGCCACTG------CCGCCGCCGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................CTCCGAATGGCCGAGTTGACTCGC.................................................................................................................................................	24	1	15.00	15	0	0	0	0	0	0	0	0	0	0	15
..................................................................................................................GT------C-----------------------ACCGACG---GGATGGGGGAGTGGCCC...............................................................	27	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................C-----------------------ACCGACG---GGATGGGGGAGTGGCCT...............................................................	25	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
......................................................................................................................................................ACG---GGATGGGGGAGTGGCCT...............................................................	20	1	3.00	3	0	1	1	1	0	0	0	0	0	0	0
..................................................................................................................GT------C-----------------------ACCGACG---GGATGGGGGAGTGGC.................................................................	25	1	3.00	3	0	0	1	0	0	0	2	0	0	0	0
..................................................................................................................GT------C-----------------------ACCGACG---GGATGGGGGAGTGGCCT...............................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................GCCGTTGCCG------------CCAGT------C-----------------------ACCGACG---GGAT............................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2
..........................................................................................................................C-----------------------ACCGACG---GGATGGGGGAGTGGC.................................................................	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..................................................................................................................GT------C-----------------------ACCGACG---GGATGGGGGAGT....................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................GACG---GGATGGGGGAGTGG..................................................................	18	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................GA------TGATGAGGCCACTG------CCGCCGC...	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................GGCCGCTGGGGCTCCGAATGGC..............................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................GGCTATGTGCCCACCGTGGGC.................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................GCGAAAGTGGCTATGTGCCCACCGTGGGC.................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................GACG---GGATGGGGGAGTGGCCT...............................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................GT------C-----------------------ACCGACG---GGATGGGGGAGTG...................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................CGAATGGCCGAGTTGACTCGCC................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................ACCGACG---GGATGGGGGAGTGGCCT...............................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................ACACTCAATGATTGCGAAAGC......................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................AATGATTGCGAAAGTGGCTAT................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................CCGACG---GGATGGGGGAGTGGCCTC..............................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........GCC---ACACTCAATGATTGCGAAAGT......................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................GT------C-----------------------ACCGACG---GGATGGGGGA......................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................AATGGCCGAGTTGACTCG..................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................G---GGATGGGGGAGTGGCCT...............................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................ACG---GGATGGGGGAGTGGA.................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TCACC--------------------AGA------TGATGAGGCCACTG------CCGCCGC...	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................CTCCGAATGGCCGAGTTGACTCGCC................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................C-----------------------ACCGACG---GGATGGGGGA......................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................AGT------C-----------------------ACCGACG---GGATGGGGGAGT....................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................C-----------------------ACCGACG---GGATGGGGGAGT....................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................CCGAATGGCCGAGTTGACTCGC.................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CACC--------------------AGA------TGATGAGGCCACTG------CC........	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................ACACTCAATGATTGCGAAAGTGGC...................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....CTAGACGCC---ACACTCAATGATTGCG...........................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................CCAGT------C-----------------------ACCGACG---GGATGGGGGAGT....................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................GCTATGTGCCCACCGTGGGCCGCT.............................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................TGCCCACCGTGGGCCGCTGGGGCTCC.....................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................GT------C-----------------------ACCGACG---GGATGGGGGAGTGGCC................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................CACTCAATGATTGCGAAAGTGGCT..................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..................CACTCAATGATTGCGAAAGT......................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................AGT------C-----------------------ACCGACG---GGATGGGGGA......................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................GCTGGGGCTCCGAATGGCCGA...........................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................CTCAATGATTGCGAAAGTGGC...................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................CG---GGATGGGGGAGTGGCCT...............................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................GGCCGCTGGGGCTCCGAATGGCCGA...........................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....ACTAGACGCC---ACACTCAATGATTG.............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................CAGT------C-----------------------ACCGACG---GGATGGGGGAGTGGC.................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................GGCTCCGAATGGCCGAGTTGACTC...................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGATGAGGCCACTG------CCGCCGCCGC	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................A------TGATGAGGCCACTG------CCGCCGCC..	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................ACG---GGATGGGGGAGTGGC.................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................CGCTGGGGCTCCGAATGGC..............................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................AATGGCCGAGTTGACTCGC.................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

TTCAACTAGACGCC---ACGCTCAATGACTGCGAAAGTGGCTATGTGCCCACCGTGGGCCGCTGGGGCTCCGAATGGCCGAGTTGACTCGCCGTTGCCG------------CCAGT------C-----------------------ACCGACG---GGATGGGGGAGCGGCCTCTCC--------------------GGATGAGGATGAGGAGGC------------CGCTGCCGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................CTCC--------------------GGATGAGGATGAGGAGGC------------.........	22	1	5.00	5	0	1	0	1	3	0	0
.............................................................................................................................................................................CTCC--------------------GGATGAGGATGAGGA........................	19	1	4.00	4	0	0	0	0	1	3	0
..................................................................................................................GT------C-----------------------ACCGACG---GGATGGGGGAGC....................................................................	22	1	2.00	2	0	0	0	0	2	0	0
..................................................................................................................GT------C-----------------------ACCGACG---GGATGGGGGAGCGGCCT...............................................................	27	1	1.00	1	0	0	0	0	1	0	0
........................................................................AATGGCCGAGTTGACTCGC.................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................GACG---GGATGGGGGAGCGGCC................................................................	20	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................ACG---GGATGGGGGAGCGGCCTCT.............................................................	22	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................CGACG---GGATGGGGGAGCGGCCTCT.............................................................	24	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................CTCTCC--------------------GGATGAGGATGAGGA........................	21	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................CTCTCC--------------------GGATGAGGATGAGGAGGC------------C........	25	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................AGT------C-----------------------ACCGACG---GGATGGGGG.......................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................ACCGACG---GGATGGGGGAGCGGCC................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.......................AATGACTGCGAAAGTGGCTATGTGCCCAC........................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1
...................................................................CTCCGAATGGCCGAGTTGACG....................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................C-----------------------ACCGACG---GGATGGGGGAGCGG..................................................................	22	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................G---GGATGGGGGAGCGGCCT...............................................................	18	1	1.00	1	1	0	0	0	0	0	0
........GACGCC---ACGCTCAATGACTGC............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...........................ACTGCGAAAGTGGCTATGTGCCCACC.......................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
....................................GTGGCTATGTGCCCACCGTGGGC.................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
....................CTCAATGACTGCGAAAGTGG....................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...............................................................GGGGCTCCGAATGGCCGAGTTGA......................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...........................................................CGCTGGGGCTCCGAATGGCC.............................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................TGAGGATGAGGAGGC------------CGCTGCCGT	24	1	1.00	1	0	1	0	0	0	0	0
..........................................ATGTGCCCACCGTGGGCCGCTGGGGCTCCG....................................................................................................................................................................	30	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................GATGAGGATGAGGAGGC------------C........	18	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................CAGT------C-----------------------ACCGACG---GGATGGGGGAGC....................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................CTCC--------------------GGATGAGGATGAGC.........................	18	4	0.25	1	0	0	0	0	0	1	0

dp5

TTCAACTAGAAGCT---ATAATCAATGACTGCGAAAGTGGCTACGTGCCCTCCGTGGGCCGCTGGGGCTCCGAGTGGCCAAGTTGACTCGCCGCTGCCC------------ACGGC------C-----------------------------A---GGATGGAGCAGCATCGATCCC--------------------CGT------CGATGGGGA------------TGTCGATGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................GAGCAGCATCGATCCC--------------------CGT------C.............................	20	1	4.00	4	0	0	0	1	0	1	2	0	0	0
.................................................................................................................................................................GAGCAGCATCGATCCC--------------------CGT------CG............................	21	1	4.00	4	0	3	0	0	0	0	1	0	0	0
..CAACTAGAAGCT---ATAATCAATGACTGC............................................................................................................................................................................................................	27	1	2.00	2	0	0	1	0	1	0	0	0	0	0
.............................................................................................CTGCCC------------ACGGC------C-----------------------------A---GGATGGAGCAGC....................................................................	25	1	2.00	2	0	0	0	0	2	0	0	0	0	0
.......AGAAGCT---ATAATCAATGACTGCGAAAGT......................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................CC------------ACGGC------C-----------------------------A---GGATGGAGCAGC....................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................GAGCAGCATCGATCCC--------------------CGT------CGT...........................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............CT---ATAATCAATGACTGCGAAAGC......................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................ATAATCAATGACTGCGAAAGTGGCTACGT..............................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................ACTGCGAAAGTGGCTACGTGCCCTCC.......................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................ACGGC------C-----------------------------A---GGATGGAGCAGCATC.................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................C------------ACGGC------C-----------------------------A---GGATGGAGCAGC....................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................TGGAGCAGCATCGATCCC--------------------CGT------CGATGGG.......................	28	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................CGCCGCTGCCC------------ACGGC------C-----------------------------A---GGATGGAGCAGC....................................................................	30	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................GAGCAGCATCGATCCC--------------------CGT------CGATGGG.......................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................GAGCAGCATCGATCCC--------------------CGT------CGAC..........................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................GTGGGCCGCTGGGGCTCCGAGTGGCC.............................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................GCGAAAGTGGCTACGTGCCCTCCGTGGGC.................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................AGCAGCATCGATCCC--------------------CGT------CGATGGG.......................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................CCC------------ACGGC------C-----------------------------A---GGATGGAGCAG.....................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................CGCTGCCC------------ACGGC------C-----------------------------A---GGATGGAGCAG.....................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................CGCTGGGGCTCCGAGTGGCCA............................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................CAAGTTGACTCGCCGCTGCCC------------AC...........................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................GGAGCAGCATCGATCCC--------------------CG.....................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...AACTAGAAGCT---ATAATCAATGACC..............................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................GCTGCCC------------ACGGC------C-----------------------------A---GGATGGAGCA......................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................................................CGCTGGGGCTCCGAGTGGC..............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................ATGGAGCAGCATCGATCCC--------------------CGT------CGATGGG.......................	29	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................ATCGATCCC--------------------CGT------CGATGGG.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................GTGGCCAAGTTGACTCGC.................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................CGCTGCCC------------ACGGC------C-----------------------------A---GGATGGA.........................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................GATGGAGCAGCATCGATCCC--------------------.......................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................GCCC------------ACGGC------C-----------------------------A---GGATGGAGCA......................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................CCCTCCGTGGGCCGCTGGG..........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................GAGCAGCATCGATCCC--------------------CGT------CGAT..........................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................TCGATCCC--------------------CGT------CGATGGGGA------------TGTCG....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................TGGGCCGCTGGGGCTCCGAGTGG...............................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........GAAGCT---ATAATCAATGACTGC............................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TTCAACTAGAAGCT---ATAATCAATGACTGCGAAAGTGGCTACGTGCCCTCCGTGGGCCGCTGGGGCTCCGAGTGGCCAAGTTGACTCGCCGCTGCCC------------ACGGC------C-----------------------------A---GGATGGAGCAGCATCGATCCC--------------------CGT------CGATGGGGA------------TGTCGATGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........AGCT---ATAATCAATGACTGC............................................................................................................................................................................................................	19	1	7.00	7	7	0	0	0	0	0
...................AATCAATGACTGCGAAAGT......................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
..............................................................................CAAGTTGACTCGCCGCTGCC..........................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................GAGCAGCATCGATCCC--------------------CGT------CG............................	21	1	3.00	3	0	0	0	0	0	3
.........................................................................GTGGCCAAGTTGACTCGCC................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.....CTAGAAGCT---ATAATCAATGACTGC............................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.........AAGCT---ATAATCAATGACTGC............................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
.........................................TACGTGCCCTCCGTGGGCCGCTGGGGCT.......................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.........................................................................................GCCGCTGCCC------------ACGGC------C-----------------------------A---GGATGGAGCA......................................................................	27	1	1.00	1	0	0	0	0	0	1
..................................................................................................C------------ACGGC------C-----------------------------A---GGATGGAGCAGC....................................................................	20	1	1.00	1	0	0	1	0	0	0
.........................................TACGTGCCCTCCGTGGGCCGCTGGGG.........................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
........GAAGCT---ATAATCAATGACTGC............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................GCATCGATCCC--------------------CGT------CGATGG........................	20	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................TGGAGCAGCATCGATCCC--------------------CGT------CG............................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................GAGCAGCATCGATCCC--------------------CGT------CGATGGGGA------------T........	29	1	1.00	1	0	0	0	0	0	1
...................AATCAATGACTGCGAAAGTGGC...................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.........................................................................GTGGCCAAGTTGACTCGC.................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................C-----------------------------A---GGATGGAGCAGCATCGA...............................................................	19	1	1.00	1	0	0	1	0	0	0
.................................................................................................................GGC------C-----------------------------A---GGATGGAGCAGCAT..................................................................	19	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................C-----------------------------A---GGATGGAGCAGCATCG................................................................	18	1	1.00	1	0	1	0	0	0	0
......TAGAAGCT---ATAATCAATGAC...............................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.................................................................................................CC------------ACGGC------C-----------------------------A---GGATGGAGCAGC....................................................................	21	1	1.00	1	0	0	1	0	0	0
.................................................CTCCGTGGGCCGCTGGGGCTC......................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................................TCGCCGCTGCCC------------ACGGC------C-----------------------------A---GGATGG..........................................................................	25	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................GAGCAGCATCGATCCC--------------------CGT------C.............................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................CAAGTTGACTCGCCGCTGC...........................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droWil2

TTCAACTAGAAGCA---ACATTCAATGACTGTGAAAGTGGCTATGTGCCGACCGTGGGCCGCTGGGGCTCCGAGTGGCCAAGTTGACTCGCCGCAGGTG---------------AA------C-----------------------AGCAACA---GGATGGAGCAGCATC-----------------------------------GGGTGAAGC------------AGACAATGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................ACA---GGATGGAGCAGCATC-----------------------------------GGGTGA........................	24	1	3.00	3	0	0	1	1	1
............................................................................GCCAAGTTGACTCGCCGCAGGTG---------------AA------..................................................................................................................	25	1	2.00	2	0	0	0	0	2
.......................................................................................................................................................CA---GGATGGAGCAGCATC-----------------------------------GGGTGAAGC------------.........	26	1	2.00	2	0	0	0	2	0
................................GAAAGTGGCTATGTGCCGACCGTGGG..................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..................................................................................................G---------------AA------C-----------------------AGCAACA---GGATGGAGCAGCA...................................................................	24	1	1.00	1	0	0	0	1	0
..............................GTGAAAGTGGCTATGTGCCGACCGTGGG..................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
........................................CTATGTGCCGACCGTGGGCCGCTGGG..........................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................GATGGAGCAGCATC-----------------------------------GGGTGA........................	20	1	1.00	1	0	0	1	0	0
..................................................................................................G---------------AA------C-----------------------AGCAACA---GGATGGAGCAGCAT..................................................................	25	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................GATGGAGCAGCATC-----------------------------------GGGT..........................	18	1	1.00	1	0	0	0	1	0
...............................................................................................GGTG---------------AA------C-----------------------AGCAACA---GGATGGAGCAGC....................................................................	26	1	1.00	1	0	0	1	0	0
...........................................................CGCTGGGGCTCCGAGTGGCCAAGT.........................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................ATGGAGCAGCATC-----------------------------------GGGTGAAGC------------A........	23	1	1.00	1	0	0	0	1	0
........................................................................................................................................................A---GGATGGAGCAGCATC-----------------------------------GG............................	18	1	1.00	1	0	0	1	0	0
.....CTAGAAGCA---ACATTCAATGACTGT............................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
............................................................GCTGGGGCTCCGAGTGGCCAAGT.........................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..................................................................................................G---------------AA------C-----------------------AGCAACA---GGATGGAGCAGC....................................................................	23	1	1.00	1	0	0	0	1	0
...................ATTCAATGACTGTGAAAGTGGC...................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.............................................................................CCAAGTTGACTCGCCGCAGGTG---------------..........................................................................................................................	22	1	1.00	1	0	0	0	0	1
........................................................GGCCGCTGGGGCTCCGAGTGGC..............................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..............................GTGAAAGTGGCTATGTGC............................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...................ATTCAATGACTGTGAAAGTGGCT..................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..CAACTAGAAGCA---ACATTC.....................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..........AGCA---ACATTCAATGACTGTGAAAGTGGC...................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.............................TGTGAAAGTGGCTATGTGCCGACC.......................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..................................................................................................................AA------C-----------------------AGCAACA---GGATGGAGCAGC....................................................................	22	1	1.00	1	0	0	0	0	1
...................................................................................................................................................GCAACA---GGATGGAGCAGCA...................................................................	19	1	1.00	1	0	0	0	1	0
......................CAATGACTGTGAAAGTGGCT..................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.......................................GCTATGTGCCGACCGTGGGCC................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..........................GACTGTGAAAGTGGCTATGTGC............................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................AACA---GGATGGAGCAGCAT..................................................................	18	1	1.00	1	0	0	0	0	1
........................ATGACTGTGAAAGTGGCTATGTGC............................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..........................................ATGTGCCGACCGTGGGCCGCTGG...........................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...................................................CCGTGGGCCGCTGGGGCTCCGA...................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.......................AATGACTGTGAAAGTGGCTATGTGC............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
.......................................................................GAGTGGCCAAGTTGACTCGCCGCA.............................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...................................................................................................................................................GCAACA---GGATGGAGCAGC....................................................................	18	1	1.00	1	0	0	0	1	0
..........................................................CCGCTGGGGCTCCGAGTGGC..............................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..................................................................................................................................................AGCAACA---GGATGGAGCAGCATC-----------------------------------GGG...........................	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................GATGGAGCAGCATC-----------------------------------GGGTGAAGC------------A........	24	1	1.00	1	0	0	0	1	0

droVir3

TTCAACTAGAAGCA---ACATTCAATGACTGTGAAAGTGGCTACGTGCCCACCGTGGGCCGCTGGGGAGCCGAATGGCCAAGCTGACTCGCCGCAGGAG------------TTGGC------C-----------------------ATGGCCG---GGATGGAGCGGCGCC---GCC--------GCCGAGCTATGCCAGCGT---TGAGGATGGCATTTGCGGCGATGCTGCTGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........GCA---ACATTCAATGACTGT............................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
........................................................................................CGCCGCAGGAG------------TTGGC------C-----------------------ATGGCC....................................................................................	23	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............A---ACATTCAATGACTGTGAA.........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GCGT---TGAGGATGGCATTTGCGGC...........	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CGCCGCAGGAG------------TTGGC------C-----------------------ATGG......................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CGAGCTATGCCAGCGT---TGAGGAT.......................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CTATGCCAGCGT---TGAGGATGG.....................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................AAGTGGCTACGTGCCCACCGTGGGC.................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TGGCCG---GGATGGAGCGGCGCC---GCC--------GCC................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..CAACTAGAAGCA---ACATTCAAT..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................AG------------TTGGC------C-----------------------ATGGCCG---GGATGGAGC.......................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CGT---TGAGGATGGCATTTGCGG............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................ATTCAATGACTGTGAAAGT......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................C-----------------------ATGGCCG---GGATGGAGCGGC....................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GAGGATGGCATTTGCGGC...........	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GCATTTGCGGCGATGCTGCTGC	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................CCACCGTGGGCCGCTGGGGAGCC.....................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CAAGCTGACTCGCCGCAGGA..........................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CACCGTGGGCCGCTGGGG.........................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CGCCGCAGGAG------------TTGGC------C-----------------------ATGGCCG---GGA.............................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CAGCGT---TGAGGATGGCATTTGCGGC...........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................GGCCG---GGATGGAGCGGCGCC---GCC--------...................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................ATGGCCG---GGATGGAGCGGC....................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CAACTAGAAGCA---ACATTCAATGACTGT............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TGGAGCGGCGCC---GCC--------GCCGAGCTATGC.......................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................CAGCGT---TGAGGATGGCATTTG...............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................AATGACTGTGAAAGTGGCT..................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................CGCTGGGGAGCCGAATGGC..............................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GCC--------GCCGAGCTATGCCAGC...................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CG---GGATGGAGCGGCGCC---G.............................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTCAACTAGAAGCA---ACATTCAATGACTGTGAAAGTGGCTACGTGCCCACCGTGGGCCGTTGGGGTGCCGAATGGCCGAGCTGACTCGCCGCTGCAG------------CCAGC------C-----------------------A---------GGATGGTGCGGCAGCGACGCC-----------CAGCTATGCCGTCGACGTTGATGATGT------------CGACGACGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................GACGCC-----------CAGCTATGCCGTCGAC................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................GCC-----------CAGCTATGCCGTCGAC................................	19	1	1.00	1	0	0	0	0	0	1
.....................................................................................ACTCGCCGCTGCAG------------CCAGC------..................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...................................................................................................................C------C-----------------------A---------GGATGGTGCGGCAGCGACGCC-----------CAGC............................................	28	1	1.00	1	0	0	0	0	1	0
.........................................................GCCGTTGGGGTGCCGAATG................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................GATGGTGCGGCAGCGACGC............................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................AATGGCCGAGCTGACTCGCCG...............................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
...........................................................................................................................................................................................................CGTTGATGATGT------------CGACGACG.	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................AGCGACGCC-----------CAGCTATGC.......................................	18	1	1.00	1	1	0	0	0	0	0
..CAACTAGAAGCA---ACATTCAATGACTG.............................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0

droGri2

TTCAACTAGAAGCCACCACAATCAATGACTGTGAAAGTGGCTATGTGCCCACCGTGGGCCGATGGGGTGCCGAATGGCCAAGCTGACTCGCCGCTGGCAACGGTGCCGGTGCCGGTCACGGCCACGATGTGGCAGCAATGCCAGCCGACGACG--------------------T-----------------------CAACGATGATGATGACGT------------CGGCATTGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................CAAGCTGACTCGCCGCTGGCAAC.......................................................................................................................................	23	1	1.00	1	1	0
..............................................................................................................................ATGTGGCAGCAATGCCAGCCGACGACG--------------------T-----------------------CA.....................................	30	1	1.00	1	0	1
................................................CCACCGTGGGCCGATGGGGTGCC.....................................................................................................................................................................	23	1	1.00	1	1	0
........................................................................................................................................AATGCCAGCCGACGACG--------------------T-----------------------CA.....................................	20	1	1.00	1	0	1
...............................................CCCACCGTGGGCCGATGGGGTGCCG....................................................................................................................................................................	25	1	1.00	1	1	0

dan_1752

scaffold_13266:3084225-3084281 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.7	-19.7	-19.7